NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1265805532|gb|PGX11482|]
View 

stage V sporulation protein R [Bacillus cereus]

Protein Classification

SpoVR family protein( domain architecture ID 10006558)

stage V sporulation protein R (SpoVR)/YcgB family protein; similar to Bacillus subtilis SpoVR which may be involved in spore cortex formation

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
SpoVR COG2719
Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation (function unknown) ...
1-472 0e+00

Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation (function unknown) [Cell cycle control, cell division, chromosome partitioning];


:

Pssm-ID: 442032  Cd Length: 502  Bit Score: 654.93  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532   1 MRASDDKALQYAIAEITEIATGFGLDFYPMRYEICPAEIIYTFGAY-GMPTRFSHWSFGKQFFRMKLQYDLGLSKI-YEL 78
Cdd:COG2719     4 GSDWTFELLERYDEEIEEIAKEFGLDFYPNQIEVITAEQMLDAYASvGMPTRYPHWSFGKQFEQLEKSYRRGLSGLaYEI 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532  79 VINSDPCYAFLLDTNSLIQNKLIVAHV-LAHCDFFKNNIRFSNTK--RDMVESMAATADRVKAYEHKYGKAEVETFLDAV 155
Cdd:COG2719    84 VINSNPCIAYLMEENSLTMQKLVIAHAaYGHNDFFKNNYLFRTWTdaRSILDYLAFAKNYIARCEERYGVDAVEAFLDAC 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 156 LAIQEH-IDPSLMRPKLAWSIDDLEEEEVEKKKVSQYDDLWNLDNRNKKQERSNIRKKKKIPPQPEKDLLLFIEEYSREL 234
Cdd:COG2719   164 HALMNHgVDRYKRPPKLSLAEERERQREREEYLQRQYNDLWRTLPELEEQDKEEAAKRRRFPEEPEENLLYFLEKNAPLL 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 235 EDWQRDILTMMREEMLYFWPQLETKIMNEGWASYWHQRILREMD----LTSDEAIEFAKLNAGVVQPSKT------SINP 304
Cdd:COG2719   244 EPWQREILRIVRKEAQYFYPQRQTKVMNEGWATFWHYTIMNELYdeglLTDGEMIEFLHSHTNVVAQPPFdspyysGINP 323
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 305 YYLGIKIFEDIEERYNNPTEEMKRR-GVKPGSG--RDKMFEVREIEWDVSFLRNYLNKDLVMREDMYLFQ--RQGKEYKV 379
Cdd:COG2719   324 YALGFAMFRDIERICENPTDEDREWfPDIAGSGdwLEKLFEARRNFKDESFIRQFLSPKLIRDFKLFSFLddDREPELEV 403
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 380 I----DKEWENVRDQLVNMRTNGG-FPYLVVEDGDYLKNGELYIKH-SYEGIELDLKYLEKVLPYLHQLWGRTVHMESIV 453
Cdd:COG2719   404 SaihdERGYRKVREQLARQYNNGGrEPNIQVVDVDYRGDRELTLRHrVHEGRPLDLDYAEEVLKHLARLWGRPVHLETVD 483
                         490
                  ....*....|....*....
gi 1265805532 454 ESKGVVFSYDGKMVHRKYV 472
Cdd:COG2719   484 EDGKVLLSYDGKPHSRRKL 502
 
Name Accession Description Interval E-value
SpoVR COG2719
Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation (function unknown) ...
1-472 0e+00

Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation (function unknown) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442032  Cd Length: 502  Bit Score: 654.93  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532   1 MRASDDKALQYAIAEITEIATGFGLDFYPMRYEICPAEIIYTFGAY-GMPTRFSHWSFGKQFFRMKLQYDLGLSKI-YEL 78
Cdd:COG2719     4 GSDWTFELLERYDEEIEEIAKEFGLDFYPNQIEVITAEQMLDAYASvGMPTRYPHWSFGKQFEQLEKSYRRGLSGLaYEI 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532  79 VINSDPCYAFLLDTNSLIQNKLIVAHV-LAHCDFFKNNIRFSNTK--RDMVESMAATADRVKAYEHKYGKAEVETFLDAV 155
Cdd:COG2719    84 VINSNPCIAYLMEENSLTMQKLVIAHAaYGHNDFFKNNYLFRTWTdaRSILDYLAFAKNYIARCEERYGVDAVEAFLDAC 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 156 LAIQEH-IDPSLMRPKLAWSIDDLEEEEVEKKKVSQYDDLWNLDNRNKKQERSNIRKKKKIPPQPEKDLLLFIEEYSREL 234
Cdd:COG2719   164 HALMNHgVDRYKRPPKLSLAEERERQREREEYLQRQYNDLWRTLPELEEQDKEEAAKRRRFPEEPEENLLYFLEKNAPLL 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 235 EDWQRDILTMMREEMLYFWPQLETKIMNEGWASYWHQRILREMD----LTSDEAIEFAKLNAGVVQPSKT------SINP 304
Cdd:COG2719   244 EPWQREILRIVRKEAQYFYPQRQTKVMNEGWATFWHYTIMNELYdeglLTDGEMIEFLHSHTNVVAQPPFdspyysGINP 323
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 305 YYLGIKIFEDIEERYNNPTEEMKRR-GVKPGSG--RDKMFEVREIEWDVSFLRNYLNKDLVMREDMYLFQ--RQGKEYKV 379
Cdd:COG2719   324 YALGFAMFRDIERICENPTDEDREWfPDIAGSGdwLEKLFEARRNFKDESFIRQFLSPKLIRDFKLFSFLddDREPELEV 403
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 380 I----DKEWENVRDQLVNMRTNGG-FPYLVVEDGDYLKNGELYIKH-SYEGIELDLKYLEKVLPYLHQLWGRTVHMESIV 453
Cdd:COG2719   404 SaihdERGYRKVREQLARQYNNGGrEPNIQVVDVDYRGDRELTLRHrVHEGRPLDLDYAEEVLKHLARLWGRPVHLETVD 483
                         490
                  ....*....|....*....
gi 1265805532 454 ESKGVVFSYDGKMVHRKYV 472
Cdd:COG2719   484 EDGKVLLSYDGKPHSRRKL 502
SpoVR pfam04293
SpoVR like protein; Family member Swiss:P37875 is Bacillus subtilis stage V sporulation ...
7-412 0e+00

SpoVR like protein; Family member Swiss:P37875 is Bacillus subtilis stage V sporulation protein R, which is involved in spore cortex formation. Little is known about cortex biosynthesis, except that it depends on several sigma E controlled genes, including spoVR. Another family member is an uncharacterized protein YcgB. YcgB has been suggested to be part of a conserved signalling pathway with YeaH and YeaG. This pathway may be involved in nitrogen metabolism (see Supplementary note 5 in.)


Pssm-ID: 427844  Cd Length: 419  Bit Score: 631.46  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532   7 KALQYAIAEITEIATGFGLDFYPMRYEICPAEIIYTFGAY-GMPTRFSHWSFGKQFFRMKLQYDLGLSKI-YELVINSDP 84
Cdd:pfam04293   5 KLLERAIEEIEEIAREYGLDFYPNQFEIITAEQMLDAYAYvGMPTRYPHWSFGKEFEKMETLYRYGLSGLaYEIVINSNP 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532  85 CYAFLLDTNSLIQNKLIVAHVLAHCDFFKNNIRFSNT--KRDMVESMAATADRVKAYEHKYGKAEVETFLDAVLAIQEHI 162
Cdd:pfam04293  85 CIAYLMEENSLTMQKLVIAHVYGHNDFFKNNYLFRQWtdARKILDYLAFAANRIRRYEERYGYEAVERFLDAAHALMNHV 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 163 DPSLMRPKLAWSIDDLEEEEVEKKKVSQYDDLWNLDNRNKKQERSNIRKKKKIPPQPEKDLLLFIEEYSRELEDWQRDIL 242
Cdd:pfam04293 165 DRYKRPRKLSLSEEEARQKEREEYLQNPYNDLWRTLPERKKKEEAELERAEKFPEEPEEDLLYFIEKHAPLLEPWQRDIL 244
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 243 TMMREEMLYFWPQLETKIMNEGWASYWHQRILREMDLTSDEAIEFAKLNAGVVQPSKTSINPYYLGIKIFEDIEERYNNP 322
Cdd:pfam04293 245 RIVRKEAQYFYPQRQTKIMNEGWASYWHYTIMNELDLTDGEMLEFLKSHTGVVAPSYSGINPYALGFAIFEDIERRCENP 324
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 323 TEEMKRR-GVKPGSGRDKMFEVREIEWDVSFLRNYLNKDLVMREDMYLFQRQGKEYKV----IDKEWENVRDQLVNMRTN 397
Cdd:pfam04293 325 TEEDREWfPDIAGSGRWKIFEVRENERDESFIRQYLTPELCRDLDLFSYKDDGRDPEVdaihDERGYRKIRDTLARQYTN 404
                         410
                  ....*....|....*
gi 1265805532 398 GGFPYLVVEDGDYLK 412
Cdd:pfam04293 405 GGQPYIQVVDGDYRG 419
PRK11767 PRK11767
SpoVR family protein; Provisional
9-459 2.36e-64

SpoVR family protein; Provisional


Pssm-ID: 236973 [Multi-domain]  Cd Length: 498  Bit Score: 215.87  E-value: 2.36e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532   9 LQYAIAEITEIATGFGLDFYPMRYEICPAEIIytFGAY---GMPTRFSHWSFGKQFFRMKLQYDLGLSKI-YELVINSDP 84
Cdd:PRK11767   17 LQRYLDEIERVAKEYGLDTYPNQIEVITAEQM--MDAYssvGMPINYRHWSFGKHFIETEQLYRRGQMGLaYEIVINSNP 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532  85 CYAFLLDTNSLIQNKLIVAHV-LAHCDFFKNNIRFsNTKRDmVESMAATADRVKAY----EHKYGKAEVETFLDAVLAIQ 159
Cdd:PRK11767   95 CIAYLMEENTMTMQALVIAHAcYGHNSFFKNNYLF-RTWTD-ASSIIDYLVFAKNYiaecEERYGVDAVERLLDSCHALM 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 160 EH-IDPSLMRPKLAWSIDDLEEEEVEKKKVSQYDDLWnldnRN--KKQERSNIRKKKKIPPQPEKDLLLFIEEYSRELED 236
Cdd:PRK11767  173 NYgVDRYKRPQKISLQEEKARQKEREEYLQSQVNDLW----RTlpKREEEKAVEEARRFPSEPQENLLYFIEKNAPLLEP 248
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 237 WQRDILTMMREEMLYFWPQLETKIMNEGWASYWHQRILREM---DLTSDEA-IEFAKLNAGVV-QPSKTS-----INPYY 306
Cdd:PRK11767  249 WQREILRIVRKIAQYFYPQRQTQVMNEGWATFWHYTILNHLydeGLVTDGFmLEFLHSHTNVVfQPPYNSpyysgINPYA 328
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 307 LGIKIFEDIEERYNNPTEEmKRRGVKPGSGRDKMFEVREIeW----DVSFLRNYLNKDLvMReDMYLFqrqgkeyKVIDK 382
Cdd:PRK11767  329 LGFAMFQDIRRICESPTEE-DREWFPDIAGSDWLETLHFA-MrnfkDESFISQFLSPKL-IR-DFRLF-------SVLDD 397
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 383 EWEN---------------VRDQLVNMRTNGGF-PYLVVEDGDYLKNGELYIKH-SYEGIELDlKYLEKVLPYLHQLWGR 445
Cdd:PRK11767  398 DRENylevsaihdeegyreIREALSRQYNLSNLePNIQVWNVDLRGDRSLTLRHiPHNRRPLD-ESRDEVLKHLHRLWGF 476
                         490
                  ....*....|....
gi 1265805532 446 TVHMESIVESKGVV 459
Cdd:PRK11767  477 DVHLEEVDEDGSVE 490
 
Name Accession Description Interval E-value
SpoVR COG2719
Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation (function unknown) ...
1-472 0e+00

Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation (function unknown) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442032  Cd Length: 502  Bit Score: 654.93  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532   1 MRASDDKALQYAIAEITEIATGFGLDFYPMRYEICPAEIIYTFGAY-GMPTRFSHWSFGKQFFRMKLQYDLGLSKI-YEL 78
Cdd:COG2719     4 GSDWTFELLERYDEEIEEIAKEFGLDFYPNQIEVITAEQMLDAYASvGMPTRYPHWSFGKQFEQLEKSYRRGLSGLaYEI 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532  79 VINSDPCYAFLLDTNSLIQNKLIVAHV-LAHCDFFKNNIRFSNTK--RDMVESMAATADRVKAYEHKYGKAEVETFLDAV 155
Cdd:COG2719    84 VINSNPCIAYLMEENSLTMQKLVIAHAaYGHNDFFKNNYLFRTWTdaRSILDYLAFAKNYIARCEERYGVDAVEAFLDAC 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 156 LAIQEH-IDPSLMRPKLAWSIDDLEEEEVEKKKVSQYDDLWNLDNRNKKQERSNIRKKKKIPPQPEKDLLLFIEEYSREL 234
Cdd:COG2719   164 HALMNHgVDRYKRPPKLSLAEERERQREREEYLQRQYNDLWRTLPELEEQDKEEAAKRRRFPEEPEENLLYFLEKNAPLL 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 235 EDWQRDILTMMREEMLYFWPQLETKIMNEGWASYWHQRILREMD----LTSDEAIEFAKLNAGVVQPSKT------SINP 304
Cdd:COG2719   244 EPWQREILRIVRKEAQYFYPQRQTKVMNEGWATFWHYTIMNELYdeglLTDGEMIEFLHSHTNVVAQPPFdspyysGINP 323
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 305 YYLGIKIFEDIEERYNNPTEEMKRR-GVKPGSG--RDKMFEVREIEWDVSFLRNYLNKDLVMREDMYLFQ--RQGKEYKV 379
Cdd:COG2719   324 YALGFAMFRDIERICENPTDEDREWfPDIAGSGdwLEKLFEARRNFKDESFIRQFLSPKLIRDFKLFSFLddDREPELEV 403
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 380 I----DKEWENVRDQLVNMRTNGG-FPYLVVEDGDYLKNGELYIKH-SYEGIELDLKYLEKVLPYLHQLWGRTVHMESIV 453
Cdd:COG2719   404 SaihdERGYRKVREQLARQYNNGGrEPNIQVVDVDYRGDRELTLRHrVHEGRPLDLDYAEEVLKHLARLWGRPVHLETVD 483
                         490
                  ....*....|....*....
gi 1265805532 454 ESKGVVFSYDGKMVHRKYV 472
Cdd:COG2719   484 EDGKVLLSYDGKPHSRRKL 502
SpoVR pfam04293
SpoVR like protein; Family member Swiss:P37875 is Bacillus subtilis stage V sporulation ...
7-412 0e+00

SpoVR like protein; Family member Swiss:P37875 is Bacillus subtilis stage V sporulation protein R, which is involved in spore cortex formation. Little is known about cortex biosynthesis, except that it depends on several sigma E controlled genes, including spoVR. Another family member is an uncharacterized protein YcgB. YcgB has been suggested to be part of a conserved signalling pathway with YeaH and YeaG. This pathway may be involved in nitrogen metabolism (see Supplementary note 5 in.)


Pssm-ID: 427844  Cd Length: 419  Bit Score: 631.46  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532   7 KALQYAIAEITEIATGFGLDFYPMRYEICPAEIIYTFGAY-GMPTRFSHWSFGKQFFRMKLQYDLGLSKI-YELVINSDP 84
Cdd:pfam04293   5 KLLERAIEEIEEIAREYGLDFYPNQFEIITAEQMLDAYAYvGMPTRYPHWSFGKEFEKMETLYRYGLSGLaYEIVINSNP 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532  85 CYAFLLDTNSLIQNKLIVAHVLAHCDFFKNNIRFSNT--KRDMVESMAATADRVKAYEHKYGKAEVETFLDAVLAIQEHI 162
Cdd:pfam04293  85 CIAYLMEENSLTMQKLVIAHVYGHNDFFKNNYLFRQWtdARKILDYLAFAANRIRRYEERYGYEAVERFLDAAHALMNHV 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 163 DPSLMRPKLAWSIDDLEEEEVEKKKVSQYDDLWNLDNRNKKQERSNIRKKKKIPPQPEKDLLLFIEEYSRELEDWQRDIL 242
Cdd:pfam04293 165 DRYKRPRKLSLSEEEARQKEREEYLQNPYNDLWRTLPERKKKEEAELERAEKFPEEPEEDLLYFIEKHAPLLEPWQRDIL 244
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 243 TMMREEMLYFWPQLETKIMNEGWASYWHQRILREMDLTSDEAIEFAKLNAGVVQPSKTSINPYYLGIKIFEDIEERYNNP 322
Cdd:pfam04293 245 RIVRKEAQYFYPQRQTKIMNEGWASYWHYTIMNELDLTDGEMLEFLKSHTGVVAPSYSGINPYALGFAIFEDIERRCENP 324
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 323 TEEMKRR-GVKPGSGRDKMFEVREIEWDVSFLRNYLNKDLVMREDMYLFQRQGKEYKV----IDKEWENVRDQLVNMRTN 397
Cdd:pfam04293 325 TEEDREWfPDIAGSGRWKIFEVRENERDESFIRQYLTPELCRDLDLFSYKDDGRDPEVdaihDERGYRKIRDTLARQYTN 404
                         410
                  ....*....|....*
gi 1265805532 398 GGFPYLVVEDGDYLK 412
Cdd:pfam04293 405 GGQPYIQVVDGDYRG 419
PRK11767 PRK11767
SpoVR family protein; Provisional
9-459 2.36e-64

SpoVR family protein; Provisional


Pssm-ID: 236973 [Multi-domain]  Cd Length: 498  Bit Score: 215.87  E-value: 2.36e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532   9 LQYAIAEITEIATGFGLDFYPMRYEICPAEIIytFGAY---GMPTRFSHWSFGKQFFRMKLQYDLGLSKI-YELVINSDP 84
Cdd:PRK11767   17 LQRYLDEIERVAKEYGLDTYPNQIEVITAEQM--MDAYssvGMPINYRHWSFGKHFIETEQLYRRGQMGLaYEIVINSNP 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532  85 CYAFLLDTNSLIQNKLIVAHV-LAHCDFFKNNIRFsNTKRDmVESMAATADRVKAY----EHKYGKAEVETFLDAVLAIQ 159
Cdd:PRK11767   95 CIAYLMEENTMTMQALVIAHAcYGHNSFFKNNYLF-RTWTD-ASSIIDYLVFAKNYiaecEERYGVDAVERLLDSCHALM 172
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 160 EH-IDPSLMRPKLAWSIDDLEEEEVEKKKVSQYDDLWnldnRN--KKQERSNIRKKKKIPPQPEKDLLLFIEEYSRELED 236
Cdd:PRK11767  173 NYgVDRYKRPQKISLQEEKARQKEREEYLQSQVNDLW----RTlpKREEEKAVEEARRFPSEPQENLLYFIEKNAPLLEP 248
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 237 WQRDILTMMREEMLYFWPQLETKIMNEGWASYWHQRILREM---DLTSDEA-IEFAKLNAGVV-QPSKTS-----INPYY 306
Cdd:PRK11767  249 WQREILRIVRKIAQYFYPQRQTQVMNEGWATFWHYTILNHLydeGLVTDGFmLEFLHSHTNVVfQPPYNSpyysgINPYA 328
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 307 LGIKIFEDIEERYNNPTEEmKRRGVKPGSGRDKMFEVREIeW----DVSFLRNYLNKDLvMReDMYLFqrqgkeyKVIDK 382
Cdd:PRK11767  329 LGFAMFQDIRRICESPTEE-DREWFPDIAGSDWLETLHFA-MrnfkDESFISQFLSPKL-IR-DFRLF-------SVLDD 397
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1265805532 383 EWEN---------------VRDQLVNMRTNGGF-PYLVVEDGDYLKNGELYIKH-SYEGIELDlKYLEKVLPYLHQLWGR 445
Cdd:PRK11767  398 DRENylevsaihdeegyreIREALSRQYNLSNLePNIQVWNVDLRGDRSLTLRHiPHNRRPLD-ESRDEVLKHLHRLWGF 476
                         490
                  ....*....|....
gi 1265805532 446 TVHMESIVESKGVV 459
Cdd:PRK11767  477 DVHLEEVDEDGSVE 490
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH