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Conserved domains on  [gi|1266662340|gb|PHF41312|]
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DUF1811 domain-containing protein [Bacillus toyonensis]

Protein Classification

YfhH family protein( domain architecture ID 10556037)

YfhH family protein is a DUF1811 domain-containing protein; similar to Bacillus subtilis protein YfhH

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1811 pfam08838
Protein of unknown function (DUF1811); This is a bacterial family of uncharacterized proteins. ...
 5-103 2.42e-52

Protein of unknown function (DUF1811); This is a bacterial family of uncharacterized proteins. Some of the proteins are annotated as being transcriptional regulators (see Swiss:Q4MQL7, Swiss:Q65MA2). The structure of one of the proteins in this family has revealed a beta-barrel like structure with helix-turn-helix like motif.


:

Pssm-ID: 430250  Cd Length: 100  Bit Score: 159.32  E-value: 2.42e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1266662340   5 KRYSEMTPHELREEIGALKEQAVKAEQLGIVNEFDVLMRKMAMARAYMTDINKFHIGETYELVEEPGVLFKITYFNGVFA 84
Cdd:pfam08838   1 KRYSEMSEEELQQEIARLQEKARKAEQLGIVNEYAVLERKIAMAKSYLLDPADFRPGETYEVEGDPGEYFKVDYLNGVFA 80

                          90       100
                  ....*....|....*....|
gi 1266662340  85 WGYKQND-NEEIGIPISLLQ 103
Cdd:pfam08838  81 WGYRLNGtREEEALPISLLK 100
 
Name Accession Description Interval E-value
DUF1811 pfam08838
Protein of unknown function (DUF1811); This is a bacterial family of uncharacterized proteins. ...
 5-103 2.42e-52

Protein of unknown function (DUF1811); This is a bacterial family of uncharacterized proteins. Some of the proteins are annotated as being transcriptional regulators (see Swiss:Q4MQL7, Swiss:Q65MA2). The structure of one of the proteins in this family has revealed a beta-barrel like structure with helix-turn-helix like motif.


Pssm-ID: 430250  Cd Length: 100  Bit Score: 159.32  E-value: 2.42e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1266662340   5 KRYSEMTPHELREEIGALKEQAVKAEQLGIVNEFDVLMRKMAMARAYMTDINKFHIGETYELVEEPGVLFKITYFNGVFA 84
Cdd:pfam08838   1 KRYSEMSEEELQQEIARLQEKARKAEQLGIVNEYAVLERKIAMAKSYLLDPADFRPGETYEVEGDPGEYFKVDYLNGVFA 80

                          90       100
                  ....*....|....*....|
gi 1266662340  85 WGYKQND-NEEIGIPISLLQ 103
Cdd:pfam08838  81 WGYRLNGtREEEALPISLLK 100
 
Name Accession Description Interval E-value
DUF1811 pfam08838
Protein of unknown function (DUF1811); This is a bacterial family of uncharacterized proteins. ...
 5-103 2.42e-52

Protein of unknown function (DUF1811); This is a bacterial family of uncharacterized proteins. Some of the proteins are annotated as being transcriptional regulators (see Swiss:Q4MQL7, Swiss:Q65MA2). The structure of one of the proteins in this family has revealed a beta-barrel like structure with helix-turn-helix like motif.


Pssm-ID: 430250  Cd Length: 100  Bit Score: 159.32  E-value: 2.42e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1266662340   5 KRYSEMTPHELREEIGALKEQAVKAEQLGIVNEFDVLMRKMAMARAYMTDINKFHIGETYELVEEPGVLFKITYFNGVFA 84
Cdd:pfam08838   1 KRYSEMSEEELQQEIARLQEKARKAEQLGIVNEYAVLERKIAMAKSYLLDPADFRPGETYEVEGDPGEYFKVDYLNGVFA 80

                          90       100
                  ....*....|....*....|
gi 1266662340  85 WGYKQND-NEEIGIPISLLQ 103
Cdd:pfam08838  81 WGYRLNGtREEEALPISLLK 100
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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