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Conserved domains on  [gi|1270471621|gb|PHS63267.1|]
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ribosome maturation factor RimM [Thalassobium sp.]

Protein Classification

ribosome maturation factor RimM( domain architecture ID 11478117)

ribosome maturation factor RimM is an accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region

Gene Ontology:  GO:0043022|GO:0042274
PubMed:  23293003

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rimM PRK00122
16S rRNA-processing protein RimM; Provisional
 8-174 1.14e-61

16S rRNA-processing protein RimM; Provisional


:

Pssm-ID: 234650 [Multi-domain]  Cd Length: 172  Bit Score: 188.43  E-value: 1.14e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621   8 VLGKVTTAFGIKGWVKVYSYTDPMTNILDYPTWLLRINGQWCEFKVTDSKLQPKGLAVALTGITDRDAALALSQVEIGVP 87
Cdd:PRK00122    9 VVGKIVSAHGIKGEVKVKSFTDFPERIFDYGPWLLGKGGEWQEVEIESGRFHKGFLIVKFEGVDDRNAAEALKGCELFVP 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621  88 TSELPELEEDEHYWFQLEGLKVVNTDGVWLGQVKELFDSgGGNQVISVKGcegsIDKRERLIPYAETIVLEVNLDNGEIQ 167
Cdd:PRK00122   89 RSQLPELEEDEYYWHDLIGLEVVDEDGEELGKVTDILET-GANDVLVVLK----DKKEERLIPFVEEVVKEVDLEAKRIT 163


                  ....*..
gi 1270471621 168 VDWDPDF 174
Cdd:PRK00122  164 VDWPEGL 170
 
Name Accession Description Interval E-value
rimM PRK00122
16S rRNA-processing protein RimM; Provisional
 8-174 1.14e-61

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 234650 [Multi-domain]  Cd Length: 172  Bit Score: 188.43  E-value: 1.14e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621   8 VLGKVTTAFGIKGWVKVYSYTDPMTNILDYPTWLLRINGQWCEFKVTDSKLQPKGLAVALTGITDRDAALALSQVEIGVP 87
Cdd:PRK00122    9 VVGKIVSAHGIKGEVKVKSFTDFPERIFDYGPWLLGKGGEWQEVEIESGRFHKGFLIVKFEGVDDRNAAEALKGCELFVP 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621  88 TSELPELEEDEHYWFQLEGLKVVNTDGVWLGQVKELFDSgGGNQVISVKGcegsIDKRERLIPYAETIVLEVNLDNGEIQ 167
Cdd:PRK00122   89 RSQLPELEEDEYYWHDLIGLEVVDEDGEELGKVTDILET-GANDVLVVLK----DKKEERLIPFVEEVVKEVDLEAKRIT 163


                  ....*..
gi 1270471621 168 VDWDPDF 174
Cdd:PRK00122  164 VDWPEGL 170
RimM COG0806
Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing [Translation, ...
 1-174 8.48e-60

Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]; Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 440569 [Multi-domain]  Cd Length: 173  Bit Score: 183.39  E-value: 8.48e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621   1 MAGEEITVLGKVTTAFGIKGWVKVYSYTDPMTNILDYPTWLLRI-NGQWCEFKVTDSKLQPKGLAVALTGITDRDAALAL 79
Cdd:COG0806     1 MKMEDLVVVGRIVKAHGVKGEVKVKSFTDDPERFFDYGPVFLEDpDGELRPLTVESVRPHKGGLLVKFEGVDDREAAEAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621  80 SQVEIGVPTSELPELEEDEHYWFQLEGLKVVNTDGVWLGQVKELFDSgGGNQVISVKGcegsIDKRERLIPYAETIVLEV 159
Cdd:COG0806    81 RGAELYVPRDDLPELEEDEFYWHDLIGLEVVDEDGEELGKVTDVLET-GANDVLVVKG----PGGKEVLIPFVDEFVPEV 155

                         170
                  ....*....|....*
gi 1270471621 160 NLDNGEIQVDWDPDF 174
Cdd:COG0806   156 DLEAGRIVVDPPEGL 170
16S_RimM TIGR02273
16S rRNA processing protein RimM; This family consists of the bacterial protein RimM (YfjA, ...
 8-173 2.24e-52

16S rRNA processing protein RimM; This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide. [Transcription, RNA processing]


Pssm-ID: 274061 [Multi-domain]  Cd Length: 165  Bit Score: 164.30  E-value: 2.24e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621   8 VLGKVTTAFGIKGWVKVYSYTDPMTNILDYPTWL-LRINGQWCEFKVTDSKLQPKGLAVALTGITDRDAALALSQVEIGV 86
Cdd:TIGR02273   3 VVGKIGGPHGIKGEVKVKSFTDFPESLFDYGPWLiLKGSKQWQTVKVARVRKQNNKLIVKFEGIDDREAAEALKGLELFV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621  87 PTSELPELEEDEHYWFQLEGLKVVNTDGVWLGQVKELFDSgGGNQVISVKGCEGsidKRERLIPYAETIVLEVNLDNGEI 166
Cdd:TIGR02273  83 PREALPELEEDEYYWTDLIGLEVVTEEGEELGKVVEILET-GANDVLVVRSKKG---KKEVLIPFVEEIVKEIDLEKKII 158


                  ....*..
gi 1270471621 167 QVDWDPD 173
Cdd:TIGR02273 159 TVDWPEG 165
RimM pfam01782
RimM N-terminal domain; The RimM protein is essential for efficient processing of 16S rRNA. ...
 8-90 3.81e-23

RimM N-terminal domain; The RimM protein is essential for efficient processing of 16S rRNA. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes. This N-terminal domain is found associated with a PRC-barrel domain.


Pssm-ID: 460327  Cd Length: 84  Bit Score: 87.23  E-value: 3.81e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621   8 VLGKVTTAFGIKGWVKVYSYTDPMTNILDYPTWLLRI-NGQWCEFKVTDSKLQPKGLAVALTGITDRDAALALSQVEIGV 86
Cdd:pfam01782   1 VVGKIVGTHGLKGEVKVKSFTDFPEDRFDYGPVFLLKkKGKWQTLTVESVRVHKKGLILKFEGIDDRDAAEALKGAELYV 80


                  ....
gi 1270471621  87 PTSE 90
Cdd:pfam01782  81 PRSD 84
 
Name Accession Description Interval E-value
rimM PRK00122
16S rRNA-processing protein RimM; Provisional
 8-174 1.14e-61

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 234650 [Multi-domain]  Cd Length: 172  Bit Score: 188.43  E-value: 1.14e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621   8 VLGKVTTAFGIKGWVKVYSYTDPMTNILDYPTWLLRINGQWCEFKVTDSKLQPKGLAVALTGITDRDAALALSQVEIGVP 87
Cdd:PRK00122    9 VVGKIVSAHGIKGEVKVKSFTDFPERIFDYGPWLLGKGGEWQEVEIESGRFHKGFLIVKFEGVDDRNAAEALKGCELFVP 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621  88 TSELPELEEDEHYWFQLEGLKVVNTDGVWLGQVKELFDSgGGNQVISVKGcegsIDKRERLIPYAETIVLEVNLDNGEIQ 167
Cdd:PRK00122   89 RSQLPELEEDEYYWHDLIGLEVVDEDGEELGKVTDILET-GANDVLVVLK----DKKEERLIPFVEEVVKEVDLEAKRIT 163


                  ....*..
gi 1270471621 168 VDWDPDF 174
Cdd:PRK00122  164 VDWPEGL 170
RimM COG0806
Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing [Translation, ...
 1-174 8.48e-60

Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing [Translation, ribosomal structure and biogenesis]; Ribosomal 30S subunit maturation factor RimM, required for 16S rRNA processing is part of the Pathway/BioSystem: 16S rRNA modification


Pssm-ID: 440569 [Multi-domain]  Cd Length: 173  Bit Score: 183.39  E-value: 8.48e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621   1 MAGEEITVLGKVTTAFGIKGWVKVYSYTDPMTNILDYPTWLLRI-NGQWCEFKVTDSKLQPKGLAVALTGITDRDAALAL 79
Cdd:COG0806     1 MKMEDLVVVGRIVKAHGVKGEVKVKSFTDDPERFFDYGPVFLEDpDGELRPLTVESVRPHKGGLLVKFEGVDDREAAEAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621  80 SQVEIGVPTSELPELEEDEHYWFQLEGLKVVNTDGVWLGQVKELFDSgGGNQVISVKGcegsIDKRERLIPYAETIVLEV 159
Cdd:COG0806    81 RGAELYVPRDDLPELEEDEFYWHDLIGLEVVDEDGEELGKVTDVLET-GANDVLVVKG----PGGKEVLIPFVDEFVPEV 155

                         170
                  ....*....|....*
gi 1270471621 160 NLDNGEIQVDWDPDF 174
Cdd:COG0806   156 DLEAGRIVVDPPEGL 170
16S_RimM TIGR02273
16S rRNA processing protein RimM; This family consists of the bacterial protein RimM (YfjA, ...
 8-173 2.24e-52

16S rRNA processing protein RimM; This family consists of the bacterial protein RimM (YfjA, 21K), a 30S ribosomal subunit-binding protein implicated in 16S ribsomal RNA processing. It has been partially characterized in Escherichia coli, is found with other translation-associated genes such as trmD. It is broadly distributed among bacteria, including some minimal genomes such the aphid endosymbiont Buchnera aphidicola. The protein contains a PRC-barrel domain that it shares with other protein families (pfam05239) and a unique domain (pfam01782). This model describes the full-length protein. A member from Arabidopsis (plant) has additional N-terminal sequence likely to represent a chloroplast transit peptide. [Transcription, RNA processing]


Pssm-ID: 274061 [Multi-domain]  Cd Length: 165  Bit Score: 164.30  E-value: 2.24e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621   8 VLGKVTTAFGIKGWVKVYSYTDPMTNILDYPTWL-LRINGQWCEFKVTDSKLQPKGLAVALTGITDRDAALALSQVEIGV 86
Cdd:TIGR02273   3 VVGKIGGPHGIKGEVKVKSFTDFPESLFDYGPWLiLKGSKQWQTVKVARVRKQNNKLIVKFEGIDDREAAEALKGLELFV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621  87 PTSELPELEEDEHYWFQLEGLKVVNTDGVWLGQVKELFDSgGGNQVISVKGCEGsidKRERLIPYAETIVLEVNLDNGEI 166
Cdd:TIGR02273  83 PREALPELEEDEYYWTDLIGLEVVTEEGEELGKVVEILET-GANDVLVVRSKKG---KKEVLIPFVEEIVKEIDLEKKII 158


                  ....*..
gi 1270471621 167 QVDWDPD 173
Cdd:TIGR02273 159 TVDWPEG 165
RimM pfam01782
RimM N-terminal domain; The RimM protein is essential for efficient processing of 16S rRNA. ...
 8-90 3.81e-23

RimM N-terminal domain; The RimM protein is essential for efficient processing of 16S rRNA. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes. This N-terminal domain is found associated with a PRC-barrel domain.


Pssm-ID: 460327  Cd Length: 84  Bit Score: 87.23  E-value: 3.81e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621   8 VLGKVTTAFGIKGWVKVYSYTDPMTNILDYPTWLLRI-NGQWCEFKVTDSKLQPKGLAVALTGITDRDAALALSQVEIGV 86
Cdd:pfam01782   1 VVGKIVGTHGLKGEVKVKSFTDFPEDRFDYGPVFLLKkKGKWQTLTVESVRVHKKGLILKFEGIDDRDAAEALKGAELYV 80


                  ....
gi 1270471621  87 PTSE 90
Cdd:pfam01782  81 PRSD 84
rimM PRK13828
16S rRNA-processing protein RimM; Provisional
 18-169 7.43e-21

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 184351 [Multi-domain]  Cd Length: 161  Bit Score: 83.84  E-value: 7.43e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621  18 IKGWVKVYSYT-DPMTnILDY-PtwLLRINGQwCEFKVTDSKLQPKGLAVALTGITDRDAALALSQVEIGVPTSELPELE 95
Cdd:PRK13828    1 VRGEVRLKSFTeDPLA-IADYgP--LTTEDGA-RSFTVALARPAKDGLVARLKGVATREAAEALRGLELYVPRDRLPELD 76

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1270471621  96 EDEHYWFQLEGLKVVNTDGVWLGQVKELFDSGGGNqVISVKGCEGsidKRERLIPYAETIVLEVNLDNGEIQVD 169
Cdd:PRK13828   77 DDEFYHADLIGLAAVDTGGALLGRVKAVHNFGAGD-ILEIAPPGG---GPTLLLPFTRAVVPTVDLAAGRVVAD 146
rimM PRK14591
16S rRNA-processing protein RimM; Provisional
 4-174 1.17e-18

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 173055 [Multi-domain]  Cd Length: 169  Bit Score: 78.16  E-value: 1.17e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621   4 EEITVLGKVTTAFGIKGWVKVYSYTDPMTNILDYPTWLLRI--NGQWCEFKVTDSKLQPKGLAVALTGITDRDAALALSQ 81
Cdd:PRK14591    3 QDFVEIAKIGATYKLNGELNLYPLANSIETLLSYGDWYIQLpaTNVWQQLKGESVLKRADKVYIKLANINNADTAKKYVN 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621  82 VEIGVPTSELPELEEDEHYWFQLEGLKVVNTDGVWLGQVKELFDSgGGNQVISVKGcegsiDKRERLIPYAETIVLEVNL 161
Cdd:PRK14591   83 ALIGVPKRALPQLAEDEVYFKDLIGCSVKNINNDSFGVVVDIIET-GANEVLVCKE-----DNSEYLIPYVKQYIVSEDL 156

                         170
                  ....*....|...
gi 1270471621 162 DNGEIQVDWDPDF 174
Cdd:PRK14591  157 NSKKIVVDWEYDY 169
rimM PRK13829
16S rRNA-processing protein RimM; Provisional
 7-162 1.69e-14

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 184352 [Multi-domain]  Cd Length: 162  Bit Score: 67.08  E-value: 1.69e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621   7 TVLGKVTTAFGIKGWVKVYSytDPMtnILDYPTWLLRINGqWceFKVTDSKLQPKGLAVALTGITDRDAALALSQVEIGV 86
Cdd:PRK13829    4 TEIGRFGGPYGVQGGLKFRG--EPV--VLDLPRVYVEGLG-W--RAIERAERVGPELVLHLAGVTSREGAEALVGLRVYA 76

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1270471621  87 PTSELPELEEDEHYWFQLEGLKVVnTDGVWLGQVKELFDSGGGNQVISVKGCEGSIDKRERLIPYAETIVlEVNLD 162
Cdd:PRK13829   77 DDADLPPLEEGSYYYHELRGLPVY-VDGEPLGEVVDVEDAGAQDLLVIRHVGGSLRARATYFVPLQAPYV-RVELD 150
rimM PRK14592
16S rRNA-processing protein RimM; Provisional
 9-166 4.08e-12

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 173056 [Multi-domain]  Cd Length: 165  Bit Score: 60.89  E-value: 4.08e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621   9 LGKVTTAFGIKGWVKVYSYTDPMTNILDYPTWllrINGQWCeFKVTDSKLQPKGLAVA-LTGITDRDAALALSQVEIGVP 87
Cdd:PRK14592    5 LGVITSPHGIKGHVKIKTFTEDPENISAYGKL---TDGSNT-YKISVVSVIGANLVIAkISGINSRTEAELLRNKKLYVE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621  88 TSELPELEEDEHYWFQLEGLKVVNTDGVWLGQVKELFDSGGGNQV-ISVkgcegSIDKRERLIPYAETIVLEVNLDNGEI 166
Cdd:PRK14592   81 RSKLPNLNEDEFYQSDLIGMEVKLEDNTIYGYIKKIYNFGSCDIIeISL-----TSTKKSTMLPFTKEIFPHINVKERYI 155
PRC pfam05239
PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction ...
 96-169 1.36e-05

PRC-barrel domain; The PRC-barrel is an all beta barrel domain found in photosystem reaction centre subunit H of the purple bacteria and RNA metabolism proteins of the RimM group. PRC-barrels are approximately 80 residues long, and found widely represented in bacteria, archaea and plants. This domain is also present at the carboxyl terminus of the pan-bacterial protein RimM, which is involved in ribosomal maturation and processing of 16S rRNA. A family of small proteins conserved in all known euryarchaea are composed entirely of a single stand-alone copy of the domain.


Pssm-ID: 398765  Cd Length: 78  Bit Score: 41.51  E-value: 1.36e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1270471621  96 EDEHYWFQLEGLKVVNTDGVWLGQVKELFDSGGGNQVISVK-GCEGSIDKRERLIPYAEtivLEVNLDNGEIQVD 169
Cdd:pfam05239   1 EDEFYASDLIGLEVYTEDGEKLGKVKDVVIDEGEGRVRYLVvSVGGFLGGKEVLIPFDK---LNVKLGKDRIIVD 72
rimM PRK14594
16S rRNA-processing protein RimM; Provisional
 8-125 2.06e-05

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 173058 [Multi-domain]  Cd Length: 166  Bit Score: 42.85  E-value: 2.06e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621   8 VLGKVTTAFGIKGWVKVYSYTDPMTNILDYP---TWLLRINGQWCEFKVTDSKLQPKGLAVALTGITDRDAALALSQVEI 84
Cdd:PRK14594    3 VKGIILSSYGINGYAKVKSISNNFCDFINLKnnkLVLKKSNCSSIEVKVEDVSLKNNSLLLKFEEFNAPEPIKPLIGFEL 82

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1270471621  85 GVPTSELPELEEDEHYWFQLEGLKVVNtDGVWLGQVKELFD 125
Cdd:PRK14594   83 WVDDELASKLEEGEYYFGKLIGYAIVN-DGKELGEVVSFFE 122
rimM PRK14590
16S rRNA-processing protein RimM; Provisional
 9-166 3.31e-03

16S rRNA-processing protein RimM; Provisional


Pssm-ID: 173054 [Multi-domain]  Cd Length: 171  Bit Score: 36.37  E-value: 3.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621   9 LGKVTTAFGIKGWVKVYSYTDPMTNI-LDYPTWLLRINGQWCEFKVTDSKLQPKG--LAVALTGITDRDAALALSQVEIG 85
Cdd:PRK14590    3 LGQLGKPFGIKGWLRVNVRGETLHTLkAPATLKLGKEDPQFPESEIALLEIRPHGgkFLVRFEGYDTPEEAVKWRGGSLF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1270471621  86 VPTSELPELE-EDEHYWFQLEGLKVVNTDGVWLG-QVKELFDSGGGNQVISVKGCEGSIdkrerLIPYAETIVLEVNLDN 163
Cdd:PRK14590   83 LPQELLPKIEtKGEFYSEDLIGLQAIDETGKPLNwKLTDVQDNPAHPILVFIKGEGEEI-----LIPFLNVFVGDLDLEK 157


                  ...
gi 1270471621 164 GEI 166
Cdd:PRK14590  158 QTI 160
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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