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Conserved domains on  [gi|1274693137|gb|PIJ47872.1|]
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hypothetical protein BOM23_24350, partial [Erwinia sp. OLMDLW33]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
biofilm_BapA_N NF033677
BapA prefix-like domain; Two largely unrelated repetitive proteins, both named ...
 11-77 1.18e-26

BapA prefix-like domain; Two largely unrelated repetitive proteins, both named biofilm-associated protein BapA (from Salmonella enterica and from Paracoccus denitrificans) share homology domains at the two ends. Both lack a typical signal peptide for translocation by Sec, and instead depend on type I secretion for export and for contribution to biofilm formation. The conserved prefix (i.e. N-terminal) domain is shared by a number of other large, repetitive proteins of Proteobacteria thought to be associated with adhesion or biofilm formation.


:

Pssm-ID: 411274 [Multi-domain]  Cd Length: 64  Bit Score: 94.93  E-value: 1.18e-26
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1274693137  11 VEILSRDDGTILSQATSGsskTVLLNQPSVVKIHGTREMVAEYERQGNDLILHMKDGTTVRYQQFFF 77
Cdd:NF033677    1 ISVISKETGVVLTQTQGE---VVLLNEPSVVKIKVSREDVASYTRQGNDLVITLKDGETIVIENFFV 64
 
Name Accession Description Interval E-value
biofilm_BapA_N NF033677
BapA prefix-like domain; Two largely unrelated repetitive proteins, both named ...
 11-77 1.18e-26

BapA prefix-like domain; Two largely unrelated repetitive proteins, both named biofilm-associated protein BapA (from Salmonella enterica and from Paracoccus denitrificans) share homology domains at the two ends. Both lack a typical signal peptide for translocation by Sec, and instead depend on type I secretion for export and for contribution to biofilm formation. The conserved prefix (i.e. N-terminal) domain is shared by a number of other large, repetitive proteins of Proteobacteria thought to be associated with adhesion or biofilm formation.


Pssm-ID: 411274 [Multi-domain]  Cd Length: 64  Bit Score: 94.93  E-value: 1.18e-26
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1274693137  11 VEILSRDDGTILSQATSGsskTVLLNQPSVVKIHGTREMVAEYERQGNDLILHMKDGTTVRYQQFFF 77
Cdd:NF033677    1 ISVISKETGVVLTQTQGE---VVLLNEPSVVKIKVSREDVASYTRQGNDLVITLKDGETIVIENFFV 64
Ig_like_BLP2 NF040520
Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus ...
 28-89 5.28e-10

Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus Acinetobacter, resembles the much larger biofilm-associated proteins Bap and Blp1 in N-terminal sequence and the presence of tandem Ig-like repeats.


Pssm-ID: 468522 [Multi-domain]  Cd Length: 729  Bit Score: 56.58  E-value: 5.28e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1274693137  28 GSSKTVLLNQPSVVKIHGTREMVAEYERQGNDLILHMKDGTTVRYQQFFFDDVDGEHSeLVF 89
Cdd:NF040520   18 GQLKKVVLNQPSIIQIGVNQKDIKSIEKQGNDLVITLKNGEKIVLENFFNEANTTEHS-LAF 78
 
Name Accession Description Interval E-value
biofilm_BapA_N NF033677
BapA prefix-like domain; Two largely unrelated repetitive proteins, both named ...
 11-77 1.18e-26

BapA prefix-like domain; Two largely unrelated repetitive proteins, both named biofilm-associated protein BapA (from Salmonella enterica and from Paracoccus denitrificans) share homology domains at the two ends. Both lack a typical signal peptide for translocation by Sec, and instead depend on type I secretion for export and for contribution to biofilm formation. The conserved prefix (i.e. N-terminal) domain is shared by a number of other large, repetitive proteins of Proteobacteria thought to be associated with adhesion or biofilm formation.


Pssm-ID: 411274 [Multi-domain]  Cd Length: 64  Bit Score: 94.93  E-value: 1.18e-26
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1274693137  11 VEILSRDDGTILSQATSGsskTVLLNQPSVVKIHGTREMVAEYERQGNDLILHMKDGTTVRYQQFFF 77
Cdd:NF033677    1 ISVISKETGVVLTQTQGE---VVLLNEPSVVKIKVSREDVASYTRQGNDLVITLKDGETIVIENFFV 64
Ig_like_BLP2 NF040520
Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus ...
 28-89 5.28e-10

Ig-like repeat protein Blp2; Blp2 (BAP-like protein 2), found broadly in the genus Acinetobacter, resembles the much larger biofilm-associated proteins Bap and Blp1 in N-terminal sequence and the presence of tandem Ig-like repeats.


Pssm-ID: 468522 [Multi-domain]  Cd Length: 729  Bit Score: 56.58  E-value: 5.28e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1274693137  28 GSSKTVLLNQPSVVKIHGTREMVAEYERQGNDLILHMKDGTTVRYQQFFFDDVDGEHSeLVF 89
Cdd:NF040520   18 GQLKKVVLNQPSIIQIGVNQKDIKSIEKQGNDLVITLKNGEKIVLENFFNEANTTEHS-LAF 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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