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Concise Results
Standard Results
Full Results
assembly protein [Escherichia coli O55:H7 str. USDA 5905]
Protein Classification
outer membrane assembly protein AsmA ( domain architecture ID 11484974 )
outer membrane assembly protein AsmA is involved in the inhibition of assembly of mutant ompF proteins
List of domain hits
Name
Accession
Description
Interval
E-value
PRK10833
PRK10833 putative assembly protein; Provisional
1-617
0e+00
putative assembly protein; Provisional
Pssm-ID: 236772 [Multi-domain]
Cd Length: 617
Bit Score: 1093.41
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 1 MRRFLTTLMILLVVLVAGLSALVLLVNPNDFR D YMVKQV A ARSGYQLQLDG P LRWHVWPQLSILSGRMSLTA Q GASQP L V 80
Cdd:PRK10833 1 MRRFLTTLMILLVVLVAGLSALVLLVNPNDFR A YMVKQV E ARSGYQLQLDG D LRWHVWPQLSILSGRMSLTA P GASQP V V 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 81 R ADNMRLDVAL L PLLSHQLSVKQVMLKGAVI Q LTP QT EA V RSEDAPVAP RD NTLPD L SDDRGWSFDISSLKVADS V L VF Q 160
Cdd:PRK10833 81 S ADNMRLDVAL W PLLSHQLSVKQVMLKGAVI R LTP DS EA Q RSEDAPVAP KG NTLPD V SDDRGWSFDISSLKVADS L L IW Q 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 161 HEDDEQ VTI R N I R LQMEQD P Q HRG S F EFS G RVNRDQRDLT I SLN G TVDASDYPH D LTA A IEQ INW QLQGADLP K QGI Q GQ 240
Cdd:PRK10833 161 HEDDEQ INV R D I N LQMEQD A Q RQV S V EFS S RVNRDQRDLT L SLN A TVDASDYPH Q LTA N IEQ LDY QLQGADLP A QGI S GQ 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 241 GS F QAQWQES H KRLS F NQ IS LTANDS T LSG Q A Q VTL T EKPE W QL R LQ FPQ LNLDNL IP L NET AN G ENG a AQQGQSQ S TLP 320
Cdd:PRK10833 241 GS L QAQWQES P KRLS L NQ LN LTANDS Q LSG S A S VTL G EKPE Y QL D LQ SDK LNLDNL LG L QPL AN D ENG - AQQGQSQ P TLP 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 321 RPVI S SRID - EPAYQGL QG FTAD IL LQA S NVR W RGMNFT D VA T Q M TN KS GLL E IT Q L Q GKL N GG QV SLPGTLDAT SIN PR 399
Cdd:PRK10833 320 RPVI A SRID s EPAYQGL RD FTAD LT LQA D NVR Y RGMNFT Q VA L Q A TN QQ GLL T IT T L S GKL G GG DF SLPGTLDAT GAS PR 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 400 I N FQPRL E NVE I G TI LKAFN Y PISLTGK M SLAGDFSGA D IDA D AFRH N WQGQAHV E M TDT R M EG M N F QQ M IQQAVER N GG 479
Cdd:PRK10833 400 I T FQPRL K NVE L G PL LKAFN L PISLTGK L SLAGDFSGA G IDA A AFRH Q WQGQAHV S M DNA R L EG L N I QQ L IQQAVER S GG 479
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 480 DVKA A EN F DN V TRLDR F T T DLTL KD GV V TLND M QGQS PM LAL S G A G T LNL AE Q T CD TQ F DI RV I GGWNG EN KLI E FL K ET 559
Cdd:PRK10833 480 DVKA Q EN Y DN Y TRLDR L T A DLTL NR GV L TLND L QGQS SL LAL T G S G Q LNL PK Q Q CD VN F NV RV T GGWNG DS KLI D FL Q ET 559
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 1277488648 560 PVPLRVYGNWQQLNY S LQVDQLLRKHLQDEAK R RLNDWAERNKDSRNGKDVKKLL E K M 617
Cdd:PRK10833 560 PVPLRVYGNWQQLNY Q LQVDQLLRKHLQDEAK K RLNDWAERNKDSRNGKDVKKLL D K L 617
Name
Accession
Description
Interval
E-value
PRK10833
PRK10833 putative assembly protein; Provisional
1-617
0e+00
putative assembly protein; Provisional
Pssm-ID: 236772 [Multi-domain]
Cd Length: 617
Bit Score: 1093.41
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 1 MRRFLTTLMILLVVLVAGLSALVLLVNPNDFR D YMVKQV A ARSGYQLQLDG P LRWHVWPQLSILSGRMSLTA Q GASQP L V 80
Cdd:PRK10833 1 MRRFLTTLMILLVVLVAGLSALVLLVNPNDFR A YMVKQV E ARSGYQLQLDG D LRWHVWPQLSILSGRMSLTA P GASQP V V 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 81 R ADNMRLDVAL L PLLSHQLSVKQVMLKGAVI Q LTP QT EA V RSEDAPVAP RD NTLPD L SDDRGWSFDISSLKVADS V L VF Q 160
Cdd:PRK10833 81 S ADNMRLDVAL W PLLSHQLSVKQVMLKGAVI R LTP DS EA Q RSEDAPVAP KG NTLPD V SDDRGWSFDISSLKVADS L L IW Q 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 161 HEDDEQ VTI R N I R LQMEQD P Q HRG S F EFS G RVNRDQRDLT I SLN G TVDASDYPH D LTA A IEQ INW QLQGADLP K QGI Q GQ 240
Cdd:PRK10833 161 HEDDEQ INV R D I N LQMEQD A Q RQV S V EFS S RVNRDQRDLT L SLN A TVDASDYPH Q LTA N IEQ LDY QLQGADLP A QGI S GQ 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 241 GS F QAQWQES H KRLS F NQ IS LTANDS T LSG Q A Q VTL T EKPE W QL R LQ FPQ LNLDNL IP L NET AN G ENG a AQQGQSQ S TLP 320
Cdd:PRK10833 241 GS L QAQWQES P KRLS L NQ LN LTANDS Q LSG S A S VTL G EKPE Y QL D LQ SDK LNLDNL LG L QPL AN D ENG - AQQGQSQ P TLP 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 321 RPVI S SRID - EPAYQGL QG FTAD IL LQA S NVR W RGMNFT D VA T Q M TN KS GLL E IT Q L Q GKL N GG QV SLPGTLDAT SIN PR 399
Cdd:PRK10833 320 RPVI A SRID s EPAYQGL RD FTAD LT LQA D NVR Y RGMNFT Q VA L Q A TN QQ GLL T IT T L S GKL G GG DF SLPGTLDAT GAS PR 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 400 I N FQPRL E NVE I G TI LKAFN Y PISLTGK M SLAGDFSGA D IDA D AFRH N WQGQAHV E M TDT R M EG M N F QQ M IQQAVER N GG 479
Cdd:PRK10833 400 I T FQPRL K NVE L G PL LKAFN L PISLTGK L SLAGDFSGA G IDA A AFRH Q WQGQAHV S M DNA R L EG L N I QQ L IQQAVER S GG 479
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 480 DVKA A EN F DN V TRLDR F T T DLTL KD GV V TLND M QGQS PM LAL S G A G T LNL AE Q T CD TQ F DI RV I GGWNG EN KLI E FL K ET 559
Cdd:PRK10833 480 DVKA Q EN Y DN Y TRLDR L T A DLTL NR GV L TLND L QGQS SL LAL T G S G Q LNL PK Q Q CD VN F NV RV T GGWNG DS KLI D FL Q ET 559
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 1277488648 560 PVPLRVYGNWQQLNY S LQVDQLLRKHLQDEAK R RLNDWAERNKDSRNGKDVKKLL E K M 617
Cdd:PRK10833 560 PVPLRVYGNWQQLNY Q LQVDQLLRKHLQDEAK K RLNDWAERNKDSRNGKDVKKLL D K L 617
AsmA
COG2982 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
1-474
2.67e-121
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 368.21
E-value: 2.67e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 1 M R R F L TT L M ILLV V LVA G L S AL V LL VNP N DF R DYMVK QV AARS G YQLQL DG P L RWHVW P QLSILS G RMS L TA -- QGASQ P 78
Cdd:COG2982 4 M K R L L II L A ILLV L LVA A L V AL P LL FDW N RL R PLIER QV SEAT G REVTI DG D L SLSLF P WPGVTL G DVT L SN pd GFGGP P 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 79 L VR A DNMR LD V ALLPLLS HQ L S V KQVM L K G A VI Q L TPQTEAVRSE D APV A PRDN tl PDLSDDRG WS F DI SS L KVA D SV LV 158
Cdd:COG2982 84 L AS A ERLE LD L ALLPLLS GE L E V DEIT L D G P VI N L ERDADGRANW D FLL A AAAA -- AADAEASA WS L DI GR L EIT D GR LV 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 159 FQHEDDEQ - V T IRNIR L QMEQ d P QHR G S F EF SG R -------------------------- VNRDQR DL TI SL N GTVD ASD 211
Cdd:COG2982 162 YDDAASGA d L T LDDLN L TLSG - P SLD G P F RL SG S grlngqpltldgkiggllalgpyplk LDLRSG DL RL SL D GTVD LAG 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 212 YPHD L TAAIEQINWQ L Q -- G AD LP KQ G iqg QG S FQAQWQESHK RL SFNQISL T AN DS T L S G QAQ VT LTEK P EWQLR L QFP 289
Cdd:COG2982 241 LDGQ L ALSGPSLRDL L A ll G VT LP EP G --- PF S LSGRLTADGD RL RLEDLKG T LG DS D L T G DLS VT GGDR P ALTGD L ASD 317
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 290 Q L N LD N L I P lnet A NGENG AA QQGQSQST LP R pvissri DEPAYQG L QGFT AD IL L Q A SNVRWR G MNFT D V A TQM T NKS G 369
Cdd:COG2982 318 R L D LD D L L P ---- A APAAA AA GAPAAARG LP D ------- APLDLSA L RALD AD VR L S A DSLKLG G LPLG D L A AHL T LDD G 386
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 370 L L EITQ L QGK L N GG QV S LPG TLDA TSIN PR INFQPR L EN V EI G TI L KAFNYPIS L T G KMSLAG D F SG ADIDAD A FRHNWQ 449
Cdd:COG2982 387 R L DLDP L SAG L Y GG TL S GSL TLDA RGDP PR VALKLS L SG V DL G PL L PDLAGFDR L S G TLNGDL D L SG TGNSVA A LLASLN 466
490 500
....*....|....*....|....*
gi 1277488648 450 G Q A HVEMT D TRME G M N FQ Q MIQQ A V 474
Cdd:COG2982 467 G S A SLSLG D GAIS G L N LE Q LLRN A G 491
AsmA
pfam05170 AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane ...
2-511
9.55e-33
AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.
Pssm-ID: 428346 [Multi-domain]
Cd Length: 607
Bit Score: 133.37
E-value: 9.55e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 2 RRF L TTLMIL L VV L VAG L S AL VL L VN PN DFRDYMVKQ V A A RSGYQ L QLD G PLRWHVW P QLSILSGRMS L T - A QG ASQ PLV 80
Cdd:pfam05170 5 LKI L VAILLG L LL L LVL L A AL IA L FD PN NYKPTLQQK V S A ATNRP L AIN G DIGRSLF P WPTLSLSDIT L A s P QG DAT PLV 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 81 RADNMRLDVAL LPLL SH Q LSVKQVM L K GA VIQ L TPQTEAVRSEDAPVAPRD N TLPDLS -------- DDRG WS FD I SSLK V 152
Cdd:pfam05170 85 SLEQVKISLSP LPLL RK Q IEIDSIR L D GA ELA L ERLKQGNWNWQELIQNQQ N QASNAP tqqpqptw PVAA WS LP I GRIQ V 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 153 ADSVLVFQHEDDEQVTIR - N IR LQ M ------------------- E QDPQ HR GS FEF ---- SG RVNRDQR ----------- 197
Cdd:pfam05170 165 SNGQVTIDDKASQKILKD i N LE LQ V stlygpsfnwskitisgkg D QDPQ SF GS QVN vtil SG EISGEAL rgststggmll 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 198 ------------------------- D L TIS LN GTVDAS D YPHDLTAA I e QI N WQ L QGAD L PKQGI Q -------------- 238
Cdd:pfam05170 245 lqtlsspiyhinslkllnaqleldg T L WDN LN LSIEDL D LKASGWKS I - TV N LA L TADE L DSLAN Q aelpganlpdtpqn 323
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 239 - GQ G SFQAQWQESHKRL S FNQI SLT A -- NDSTLS G QAQ V TLTE ------------ K P EWQLR L QF P Q L N LDNL I P LNETA 303
Cdd:pfam05170 324 i TL G ELSLSFKTGRVQV S GSLN SLT L nl DYLSFD G KKW V GSSD idlsnrlpqpqp R P KLRGK L SS P E L D LDNL L P IKTAV 403
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 304 NGENG A AQQGQ S QSTLPRPVISSRIDEPAYQGL QG FT AD ILLQASN V RWR G MNFT D VA T QMTNKS G L L EITQ L Q G K L N GG 383
Cdd:pfam05170 404 AAKSR A PEWDA S GLSADGANLPLPVEPFLWGVW QG MD AD VSANIDK V TYS G LPIS D LK T KLRSEG G V L QLSR L K G G L Y GG 483
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 384 QVSLPGT LD ATSINPRINFQPRLE N VEIGTI L KAFNYPI S LT G KMSLAG D FS G ADIDADAFRHNWQ GQ AHVEMTDTRME G 463
Cdd:pfam05170 484 YLEAGAQ LD LSKKPATYRLKINAK N IPLKPL L PDLFKMF S TD G LLDIDA D LQ G SGNSVKMLIGSLN GQ LKLNLRNGALS G 563
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 1277488648 464 M N FQQMI qqave R NG GDVKAAENF D NV T RLDRF T TD L T L KD GVVTLND 511
Cdd:pfam05170 564 I N VGNIL ----- V NG IAGLTSDFG D KS T PFNCL T LN L N L QR GVVTLND 606
Name
Accession
Description
Interval
E-value
PRK10833
PRK10833 putative assembly protein; Provisional
1-617
0e+00
putative assembly protein; Provisional
Pssm-ID: 236772 [Multi-domain]
Cd Length: 617
Bit Score: 1093.41
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 1 MRRFLTTLMILLVVLVAGLSALVLLVNPNDFR D YMVKQV A ARSGYQLQLDG P LRWHVWPQLSILSGRMSLTA Q GASQP L V 80
Cdd:PRK10833 1 MRRFLTTLMILLVVLVAGLSALVLLVNPNDFR A YMVKQV E ARSGYQLQLDG D LRWHVWPQLSILSGRMSLTA P GASQP V V 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 81 R ADNMRLDVAL L PLLSHQLSVKQVMLKGAVI Q LTP QT EA V RSEDAPVAP RD NTLPD L SDDRGWSFDISSLKVADS V L VF Q 160
Cdd:PRK10833 81 S ADNMRLDVAL W PLLSHQLSVKQVMLKGAVI R LTP DS EA Q RSEDAPVAP KG NTLPD V SDDRGWSFDISSLKVADS L L IW Q 160
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 161 HEDDEQ VTI R N I R LQMEQD P Q HRG S F EFS G RVNRDQRDLT I SLN G TVDASDYPH D LTA A IEQ INW QLQGADLP K QGI Q GQ 240
Cdd:PRK10833 161 HEDDEQ INV R D I N LQMEQD A Q RQV S V EFS S RVNRDQRDLT L SLN A TVDASDYPH Q LTA N IEQ LDY QLQGADLP A QGI S GQ 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 241 GS F QAQWQES H KRLS F NQ IS LTANDS T LSG Q A Q VTL T EKPE W QL R LQ FPQ LNLDNL IP L NET AN G ENG a AQQGQSQ S TLP 320
Cdd:PRK10833 241 GS L QAQWQES P KRLS L NQ LN LTANDS Q LSG S A S VTL G EKPE Y QL D LQ SDK LNLDNL LG L QPL AN D ENG - AQQGQSQ P TLP 319
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 321 RPVI S SRID - EPAYQGL QG FTAD IL LQA S NVR W RGMNFT D VA T Q M TN KS GLL E IT Q L Q GKL N GG QV SLPGTLDAT SIN PR 399
Cdd:PRK10833 320 RPVI A SRID s EPAYQGL RD FTAD LT LQA D NVR Y RGMNFT Q VA L Q A TN QQ GLL T IT T L S GKL G GG DF SLPGTLDAT GAS PR 399
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 400 I N FQPRL E NVE I G TI LKAFN Y PISLTGK M SLAGDFSGA D IDA D AFRH N WQGQAHV E M TDT R M EG M N F QQ M IQQAVER N GG 479
Cdd:PRK10833 400 I T FQPRL K NVE L G PL LKAFN L PISLTGK L SLAGDFSGA G IDA A AFRH Q WQGQAHV S M DNA R L EG L N I QQ L IQQAVER S GG 479
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 480 DVKA A EN F DN V TRLDR F T T DLTL KD GV V TLND M QGQS PM LAL S G A G T LNL AE Q T CD TQ F DI RV I GGWNG EN KLI E FL K ET 559
Cdd:PRK10833 480 DVKA Q EN Y DN Y TRLDR L T A DLTL NR GV L TLND L QGQS SL LAL T G S G Q LNL PK Q Q CD VN F NV RV T GGWNG DS KLI D FL Q ET 559
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 1277488648 560 PVPLRVYGNWQQLNY S LQVDQLLRKHLQDEAK R RLNDWAERNKDSRNGKDVKKLL E K M 617
Cdd:PRK10833 560 PVPLRVYGNWQQLNY Q LQVDQLLRKHLQDEAK K RLNDWAERNKDSRNGKDVKKLL D K L 617
AsmA
COG2982 Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall ...
1-474
2.67e-121
Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442221 [Multi-domain]
Cd Length: 491
Bit Score: 368.21
E-value: 2.67e-121
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 1 M R R F L TT L M ILLV V LVA G L S AL V LL VNP N DF R DYMVK QV AARS G YQLQL DG P L RWHVW P QLSILS G RMS L TA -- QGASQ P 78
Cdd:COG2982 4 M K R L L II L A ILLV L LVA A L V AL P LL FDW N RL R PLIER QV SEAT G REVTI DG D L SLSLF P WPGVTL G DVT L SN pd GFGGP P 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 79 L VR A DNMR LD V ALLPLLS HQ L S V KQVM L K G A VI Q L TPQTEAVRSE D APV A PRDN tl PDLSDDRG WS F DI SS L KVA D SV LV 158
Cdd:COG2982 84 L AS A ERLE LD L ALLPLLS GE L E V DEIT L D G P VI N L ERDADGRANW D FLL A AAAA -- AADAEASA WS L DI GR L EIT D GR LV 161
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 159 FQHEDDEQ - V T IRNIR L QMEQ d P QHR G S F EF SG R -------------------------- VNRDQR DL TI SL N GTVD ASD 211
Cdd:COG2982 162 YDDAASGA d L T LDDLN L TLSG - P SLD G P F RL SG S grlngqpltldgkiggllalgpyplk LDLRSG DL RL SL D GTVD LAG 240
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 212 YPHD L TAAIEQINWQ L Q -- G AD LP KQ G iqg QG S FQAQWQESHK RL SFNQISL T AN DS T L S G QAQ VT LTEK P EWQLR L QFP 289
Cdd:COG2982 241 LDGQ L ALSGPSLRDL L A ll G VT LP EP G --- PF S LSGRLTADGD RL RLEDLKG T LG DS D L T G DLS VT GGDR P ALTGD L ASD 317
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 290 Q L N LD N L I P lnet A NGENG AA QQGQSQST LP R pvissri DEPAYQG L QGFT AD IL L Q A SNVRWR G MNFT D V A TQM T NKS G 369
Cdd:COG2982 318 R L D LD D L L P ---- A APAAA AA GAPAAARG LP D ------- APLDLSA L RALD AD VR L S A DSLKLG G LPLG D L A AHL T LDD G 386
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 370 L L EITQ L QGK L N GG QV S LPG TLDA TSIN PR INFQPR L EN V EI G TI L KAFNYPIS L T G KMSLAG D F SG ADIDAD A FRHNWQ 449
Cdd:COG2982 387 R L DLDP L SAG L Y GG TL S GSL TLDA RGDP PR VALKLS L SG V DL G PL L PDLAGFDR L S G TLNGDL D L SG TGNSVA A LLASLN 466
490 500
....*....|....*....|....*
gi 1277488648 450 G Q A HVEMT D TRME G M N FQ Q MIQQ A V 474
Cdd:COG2982 467 G S A SLSLG D GAIS G L N LE Q LLRN A G 491
AsmA
pfam05170 AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane ...
2-511
9.55e-33
AsmA family; The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.
Pssm-ID: 428346 [Multi-domain]
Cd Length: 607
Bit Score: 133.37
E-value: 9.55e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 2 RRF L TTLMIL L VV L VAG L S AL VL L VN PN DFRDYMVKQ V A A RSGYQ L QLD G PLRWHVW P QLSILSGRMS L T - A QG ASQ PLV 80
Cdd:pfam05170 5 LKI L VAILLG L LL L LVL L A AL IA L FD PN NYKPTLQQK V S A ATNRP L AIN G DIGRSLF P WPTLSLSDIT L A s P QG DAT PLV 84
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 81 RADNMRLDVAL LPLL SH Q LSVKQVM L K GA VIQ L TPQTEAVRSEDAPVAPRD N TLPDLS -------- DDRG WS FD I SSLK V 152
Cdd:pfam05170 85 SLEQVKISLSP LPLL RK Q IEIDSIR L D GA ELA L ERLKQGNWNWQELIQNQQ N QASNAP tqqpqptw PVAA WS LP I GRIQ V 164
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 153 ADSVLVFQHEDDEQVTIR - N IR LQ M ------------------- E QDPQ HR GS FEF ---- SG RVNRDQR ----------- 197
Cdd:pfam05170 165 SNGQVTIDDKASQKILKD i N LE LQ V stlygpsfnwskitisgkg D QDPQ SF GS QVN vtil SG EISGEAL rgststggmll 244
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 198 ------------------------- D L TIS LN GTVDAS D YPHDLTAA I e QI N WQ L QGAD L PKQGI Q -------------- 238
Cdd:pfam05170 245 lqtlsspiyhinslkllnaqleldg T L WDN LN LSIEDL D LKASGWKS I - TV N LA L TADE L DSLAN Q aelpganlpdtpqn 323
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 239 - GQ G SFQAQWQESHKRL S FNQI SLT A -- NDSTLS G QAQ V TLTE ------------ K P EWQLR L QF P Q L N LDNL I P LNETA 303
Cdd:pfam05170 324 i TL G ELSLSFKTGRVQV S GSLN SLT L nl DYLSFD G KKW V GSSD idlsnrlpqpqp R P KLRGK L SS P E L D LDNL L P IKTAV 403
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 304 NGENG A AQQGQ S QSTLPRPVISSRIDEPAYQGL QG FT AD ILLQASN V RWR G MNFT D VA T QMTNKS G L L EITQ L Q G K L N GG 383
Cdd:pfam05170 404 AAKSR A PEWDA S GLSADGANLPLPVEPFLWGVW QG MD AD VSANIDK V TYS G LPIS D LK T KLRSEG G V L QLSR L K G G L Y GG 483
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 384 QVSLPGT LD ATSINPRINFQPRLE N VEIGTI L KAFNYPI S LT G KMSLAG D FS G ADIDADAFRHNWQ GQ AHVEMTDTRME G 463
Cdd:pfam05170 484 YLEAGAQ LD LSKKPATYRLKINAK N IPLKPL L PDLFKMF S TD G LLDIDA D LQ G SGNSVKMLIGSLN GQ LKLNLRNGALS G 563
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 1277488648 464 M N FQQMI qqave R NG GDVKAAENF D NV T RLDRF T TD L T L KD GVVTLND 511
Cdd:pfam05170 564 I N VGNIL ----- V NG IAGLTSDFG D KS T PFNCL T LN L N L QR GVVTLND 606
AsmA_2
pfam13502 AsmA-like C-terminal region; This family is similar to the C-terminal of the AsmA protein of E. ...
357-570
8.82e-18
AsmA-like C-terminal region; This family is similar to the C-terminal of the AsmA protein of E. coli.
Pssm-ID: 463902 [Multi-domain]
Cd Length: 226
Bit Score: 82.80
E-value: 8.82e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 357 FTD V ATQMTNKS G L L EITQ L QGKLN GG QVSLP G TLDATSIN PR I N FQPR L EN V EI G TI LK AFNY P IS L T GK M SL A G DF S G 436
Cdd:pfam13502 1 LGN V SGKLRPQG G G L RLDK L NLRSP GG KLAGS G EWRTGGGA PR T N LDLK L DG V DL G AL LK RLGL P EV L G GK G SL D G SL S W 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 437 ADIDADAFRHNWQ G QAHVEMTDTRME G MNFQQMIQQAV erng G D V kaaen F DNVTRL D RF T TDLTLKD GVV TLN D MQGQS 516
Cdd:pfam13502 81 QGAPLSPDLSSLS G DLDLDLGNGQIL G RDLGLLKTLDF ---- R D L ----- F GKGLAF D SI T GPFSIEN GVV HTD D FKLDG 151
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1277488648 517 P MLA L SGA GT LN L AEQ T C D -- TQFDIR ------ V IGGWN G ENK L IE F L ---------- K ETPVPL RV Y G N W Q 570
Cdd:pfam13502 152 P AAK L TIK GT VD L DRE T L D yn VVVVPP igaslp V VAAAA G NPG L AA F A adkllspple K IIALEY RV T G P W D 223
YhdR
COG3164 Uncharacterized conserved protein YhdP, contains DUF3971 and AsmA2 domains [Function unknown];
3-393
4.11e-10
Uncharacterized conserved protein YhdP, contains DUF3971 and AsmA2 domains [Function unknown];
Pssm-ID: 442397 [Multi-domain]
Cd Length: 1289
Bit Score: 63.03
E-value: 4.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 3 R F L TT L MIL L V VL V A G L SA L VL L VN P -- N D F R DYMVKQVAARS G YQLQ --- L DG pl R W H - VW P Q L SI ls GRMS L TA q GAS 76
Cdd:COG3164 14 R I L LL L LAV L L VL L A L L LS L LR L LL P ll D D Y R PQLEAWLSQAL G VPVT igs L SA -- S W Q g LG P V L EL -- RDVR L LD - PDG 88
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 77 Q P LV R ADNMR L DVA L L - P LL SHQLSVKQVM L K G AVIQ L TPQTEA --- V RSEDAPVAPRDNT L PD L S D drg W SFDISSLKV 152
Cdd:COG3164 89 R P AL R LPRVE L ALD L W r S LL HGRPRFRRLT L D G LQLD L RRDADG rws V AGLPVSGGGDGDD L DA L L D --- W LLQQGRFSL 165
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 153 A DS V L VFQHE - DDEQV T IRNIR L QMEQDP - Q HR GSFEF S GRVNRDQR d L TISLNGTVDASDYPHDLTA aie Q INW Q LQGA 230
Cdd:COG3164 166 R DS R L RWLDP s RGPPL T LSIVN L RLRNGG r R HR LEGRA S LPAALGGP - L DLRADLRGPDPGDWRGWSG --- Q LYL Q ADDV 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 231 DL ---------- PKQGIQ G Q GS FQ A ------- QWQESHKR L SFNQI SL TANDST ------- LSG QAQVTLTEK p E WQL R L 286
Cdd:COG3164 242 DL apwlprdlpd NLGLQS G R GS LR A wldlrdg RLTSATAD L ALSDL SL RLAEDL pplalqr LSG RLRWQRQGD - G WQL D L 320
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 287 QFPQ L NL D NLI -- PLNETANGENG A A Q QGQSQSTLP R ----------------- P VISSRIDEPAYQ G - L QGFTA D IL L Q 346
Cdd:COG3164 321 PDLR L AT D GQA wp LGDLSLRWQPA A G Q GEELRLRAD R ldlaalapllpllpllp P ALRELLAALQPR G r L RDLRL D WP L E 400
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 1277488648 347 A s NV R W R G - MNFT D VAT Q ------- MTNK SG L L EITQLQ G K L N ---- GGQVS LPG TLDA 393
Cdd:COG3164 401 A - PE R Y R L s ARLQ D LSW Q awgglpg VSGL SG T L SGDEQG G R L T ldsq DATLD LPG VFRE 458
TamB
COG2911 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
163-442
1.52e-07
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 54.66
E-value: 1.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 163 DD EQ VT IRNIR L QMEQ ---- DPQHR G SFEFSG R VNR ----------- D QRD L TIS LNG TV D A S DYPHDLTAAIE - QINWQ 226
Cdd:COG2911 206 DD GR VT LGPLC L AGGG slcl SGTLG G TLDLQL R LKN lplallnpflp D DLG L SGT LNG DA D L S GGLANPQGDAS l SLSGD 285
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 227 L QGA D LPKQGIQ G Q G SFQAQWQESHK RL SFN - QISLTANDS - T LSG QAQVTLTEK P EWQ L RLQF p Q L NLDN L IP LN e TAN 304
Cdd:COG2911 286 L TLN D GLGGLPL G L G DLTLNARLANG RL TLD l TLDGGGLGT l S LSG SVPLADGLP P SAP L DGNL - R L DNLD L AL LN - PLL 363
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 305 GENGAAQQ GQ SQST L prp VI S SRIDE P AYQ G --- L QGFTADILLQ asnvrwr G MNF TD VATQMTNKSGL L EITQ L QGKLN 381
Cdd:COG2911 364 PGVLERLS GQ LNGD L --- RL S GTLAA P QLN G qlt L DDGRLKLPAL ------- G VRL TD INLRLRFDGDR L TLDG L TADSG 433
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1277488648 382 GG QVS L P GT L D ATSINPRINFQPRLE N VEI gt ILKAF n Y PISLT G KMS L A G DFS G ADIDAD 442
Cdd:COG2911 434 GG TLT L S GT V D LDGLSWPADLTLKGD N LRV -- LNPPD - Y TATVS G DLT L T G TPD G PTLSGN 491
TamB
COG2911 Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, ...
65-529
1.56e-04
Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442155 [Multi-domain]
Cd Length: 766
Bit Score: 44.65
E-value: 1.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 65 S G RMS L TAQ G asq PLVR AD NM RLD VAL L P LL SHQ L SVKQVM L KGA viqltpqteavrsedap VAPRDNT L PD L SD D RGWS 144
Cdd:COG2911 4 G G GLT L RDD G --- VDLE AD RL RLD WSP L A LL RGR L CIDELA L SAS ----------------- LDGDRLR L DN L DL D APEG 63
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 145 FDISS L KVADSV L VFQHE D DEQVTIRNIR L QME qdpqh RGSFEF SG RVNRDQR D LTIS L NG ------------------- 205
Cdd:COG2911 64 ALSGL L DLVQAT L DAEGL D LASSALDDLD L RSG ----- GNRLTL SG NLSAASL D GDLD L DA pdladlaallpglagslsg 138
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 206 -------- TV D ASDYP H D L TAAIEQINWQ L Q ----- G A D LPKQ G IQGQGS F -- QAQ W QESHK - R LS FNQISL T ANDST L S 269
Cdd:COG2911 139 dgldslsl DA D GTLAQ H R L DLDAKGEPAS L S lalsg G L D RDDG G TLSRLD F ln TGR W GLAAP a T LS YDDGRV T LGPLC L A 218
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 270 G QAQVT L -- T EKPEWQ L R L QFPQ L N L DN L I P LNETAN G EN G AAQ - QGQSQST L PR P VISSRID epayqglqg FTA D IL L Q 346
Cdd:COG2911 219 G GGSLC L sg T LGGTLD L Q L RLKN L P L AL L N P FLPDDL G LS G TLN g DADLSGG L AN P QGDASLS --------- LSG D LT L N 289
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 347 ASNVRWR g MNFT D VATQMTNKS G L L EITQLQGKLNG G QV SL P G TL --- D ATSINPRINFQP RL E N VEIG t I L KAFNYPI - 422
Cdd:COG2911 290 DGLGGLP - LGLG D LTLNARLAN G R L TLDLTLDGGGL G TL SL S G SV pla D GLPPSAPLDGNL RL D N LDLA - L L NPLLPGV l 367
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277488648 423 - S L T G KMSLAGDF SG ---------- ADI D ADAFRHNWQ G ------ QAHVEMTDT R ME gmn FQQMIQQA ver N GG DVKAAE 485
Cdd:COG2911 368 e R L S G QLNGDLRL SG tlaapqlngq LTL D DGRLKLPAL G vrltdi NLRLRFDGD R LT --- LDGLTADS --- G GG TLTLSG 441
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 1277488648 486 NF D nvtr LD RFTTDLT L K dgv VTLNDMQ - GQS P MLALSGA G T L N L 529
Cdd:COG2911 442 TV D ---- LD GLSWPAD L T --- LKGDNLR v LNP P DYTATVS G D L T L 479
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
