|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
1-330 |
0e+00 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 734.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSA 80
Cdd:PRK15093 1 MPLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160
Cdd:PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVET 240
Cdd:PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 241 APSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEQLPIGCRLGPRCPYAQRECIVTPRLTGAKNHLYA 320
Cdd:PRK15093 241 APSKELVTTPHHPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEHLPIGCRLGPRCPYAQRECIETPRLTGAKNHLYA 320
|
330
....*....|
gi 1277489719 321 CHFPLNMEKE 330
Cdd:PRK15093 321 CHFPLNMEEE 330
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
1-329 |
0e+00 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 697.04 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSA 80
Cdd:COG4170 1 MPLLDIRNLTIEIDTPQGRVKAVDRVSLTLNEGEIRGLVGESGSGKSLIAKAICGITKDNWHVTADRFRWNGIDLLKLSP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160
Cdd:COG4170 81 RERRKIIGREIAMIFQEPSSCLDPSAKIGDQLIEAIPSWTFKGKWWQRFKWRKKRAIELLHRVGIKDHKDIMNSYPHELT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVET 240
Cdd:COG4170 161 EGECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTVES 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 241 APSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLEQLPIGCRLGPRCPYAQRECIVTPRLTGAKNHLYA 320
Cdd:COG4170 241 GPTEQILKSPHHPYTKALLRSMPDFRQPLPHKSRLNTLPGSIPPLQHLPIGCRLGPRCPYAQKKCVETPRLRKIKGHEFA 320
|
....*....
gi 1277489719 321 CHFPLNMEK 329
Cdd:COG4170 321 CHFPLNMEE 329
|
|
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
3-324 |
1.30e-125 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 362.45 E-value: 1.30e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 3 LLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNwRVTADRMRFDDIDLLRLSARE 82
Cdd:COG0444 1 LLEVRNLKVYFPTRRGVVKAVDGVSFDVRRGETLGLVGESGSGKSTLARAILGLLPPP-GITSGEILFDGEDLLKLSEKE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWTYKGRwwqrfGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEG 162
Cdd:COG0444 80 LRKIRGREIQMIFQDPMTSLNPVMTVGDQIAEPLRIHGGLSK-----AEARERAIELLERVGLPDPERRLDRYPHELSGG 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 163 ECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAP 242
Cdd:COG0444 155 MRQRVMIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIVEEGP 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 243 SKELVTMPHHPYTQALIRAIPDFGsamPHKSRLNTLPGAIPLLEQLPIGCRLGPRCPYAQRECIVT-PRLTG-AKNHLYA 320
Cdd:COG0444 235 VEELFENPRHPYTRALLSSIPRLD---PDGRRLIPIPGEPPSLLNPPSGCRFHPRCPYAMDRCREEePPLREvGPGHRVA 311
|
....
gi 1277489719 321 CHFP 324
Cdd:COG0444 312 CHLY 315
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
1-326 |
2.30e-106 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 313.60 E-value: 2.30e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSA 80
Cdd:PRK11022 1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWTYKGRwwqrfGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160
Cdd:PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNK-----KTRRQRAIDLLNQVGIPDPASRLDVYPHQLS 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVET 240
Cdd:PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 241 APSKELVTMPHHPYTQALIRAIPDFGSAmphKSRLNTLPGAIPLLEQLPIGCRLGPRCPYAQREC-IVTPRLTGAKNHLY 319
Cdd:PRK11022 236 GKAHDIFRAPRHPYTQALLRALPEFAQD---KARLASLPGVVPGKYDRPNGCLLNPRCPYATDRCrAEEPALNMLAGRQS 312
|
....*..
gi 1277489719 320 ACHFPLN 326
Cdd:PRK11022 313 KCHYPLD 319
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-286 |
2.95e-94 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 289.66 E-value: 2.95e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSA 80
Cdd:COG4172 4 MPLLSVEDLSVAFGQGGGTVEAVKGVSFDIAAGETLALVGESGSGKSVTALSILRLLPDPAAHPSGSILFDGQDLLGLSE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIpawtykgRWWQRFGWR--KRRAIELLHRVGIKDHKDAMRSFPYE 158
Cdd:COG4172 84 RELRRIRGNRIAMIFQEPMTSLNPLHTIGKQIAEVL-------RLHRGLSGAaaRARALELLERVGIPDPERRLDAYPHQ 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTV 238
Cdd:COG4172 157 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGEIV 236
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1277489719 239 ETAPSKELVTMPHHPYTQALIRAIPDfGSAMPHKsrlntlPGAIPLLE 286
Cdd:COG4172 237 EQGPTAELFAAPQHPYTRKLLAAEPR-GDPRPVP------PDAPPLLE 277
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-324 |
3.19e-84 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 257.35 E-value: 3.19e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADrMRFDDIDLLRLSA 80
Cdd:PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGS-ATFNGREILNLPE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIpaWTYKGrwwqrfgWRKRRAIE----LLHRVGIKDHKDAMRSFP 156
Cdd:PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVL--MLHKG-------MSKAEAFEesvrMLDAVKMPEARKRMKMYP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 157 YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQ 236
Cdd:PRK09473 160 HEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGR 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 237 TVETAPSKELVTMPHHPYTQALIRAIPDFGSAmphKSRLNTLPGAIPLLEQLPIGCRLGPRCPYAQRECIVTPRLTG-AK 315
Cdd:PRK09473 240 TMEYGNARDVFYQPSHPYSIGLLNAVPRLDAE---GESLLTIPGNPPNLLRLPKGCPFQPRCPHAMEICSSAPPLEEfGP 316
|
....*....
gi 1277489719 316 NHLYACHFP 324
Cdd:PRK09473 317 GRLRACFKP 325
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
3-241 |
1.45e-82 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 249.35 E-value: 1.45e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 3 LLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKdnwrVTADRMRFDDIDLLRLSaRE 82
Cdd:cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK----PTSGSIIFDGKDLLKLS-RR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQniPAWTYKGRWWQRfgwrKRRAIELLHRVGIKDHKDAMRSFPYELTEG 162
Cdd:cd03257 76 LRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAE--PLRIHGKLSKKE----ARKEAVLLLLVGVGLPEEVLNRYPHELSGG 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1277489719 163 ECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETA 241
Cdd:cd03257 150 QRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
2-263 |
2.30e-80 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 253.29 E-value: 2.30e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEFKT-GDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNkdnwRVTADRMRFDDIDLLRLSA 80
Cdd:COG1123 259 PLLEVRNLSKRYPVrGKGGVRAVDDVSLTLRRGETLGLVGESGSGKSTLARLLLGLL----RPTSGSILFDGKDLTKLSR 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERRKLvGHNVSMIFQEPQSCLDPSERVGRQLMQniPAWTYKGRwwqRFGWRKRRAIELLHRVGIKdhKDAMRSFPYELT 160
Cdd:COG1123 335 RSLREL-RRRVQMVFQDPYSSLNPRMTVGDIIAE--PLRLHGLL---SRAERRERVAELLERVGLP--PDLADRYPHELS 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVET 240
Cdd:COG1123 407 GGQRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVED 486
|
250 260
....*....|....*....|...
gi 1277489719 241 APSKELVTMPHHPYTQALIRAIP 263
Cdd:COG1123 487 GPTEEVFANPQHPYTRALLAAVP 509
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
2-324 |
9.56e-80 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 245.80 E-value: 9.56e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEF-------KTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKdnwrVTADRMRFDDID 74
Cdd:COG4608 6 PLLEVRDLKKHFpvrgglfGRTVGVVKAVDGVSFDIRRGETLGLVGESGCGKSTLGRLLLRLEE----PTSGEILFDGQD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 75 LLRLSARERRKLvGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWTYKGRwwqrfGWRKRRAIELLHRVGIKdhKDAMRS 154
Cdd:COG4608 82 ITGLSGRELRPL-RRRMQMVFQDPYASLNPRMTVGDIIAEPLRIHGLASK-----AERRERVAELLELVGLR--PEHADR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYC 234
Cdd:COG4608 154 YPHEFSGGQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDELGLTYLFISHDLSVVRHISDRVAVMYL 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 235 GQTVETAPSKELVTMPHHPYTQALIRAIPdfgSAMPHKSRLN-TLPGAIPLLEQLPIGCRLGPRCPYAQRECI-VTPRLT 312
Cdd:COG4608 234 GKIVEIAPRDELYARPLHPYTQALLSAVP---VPDPERRRERiVLEGDVPSPLNPPSGCRFHTRCPYAQDRCAtEEPPLR 310
|
330
....*....|...
gi 1277489719 313 G-AKNHLYACHFP 324
Cdd:COG4608 311 EvGPGHQVACHLA 323
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
3-265 |
2.50e-74 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 229.30 E-value: 2.50e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 3 LLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDLLRLSARE 82
Cdd:COG1124 1 MLEVRNLSVSYGQGGRRVPVLKDVSLEVAPGESFGLVGESGSGKSTLLRALAGLERP----WSGEVTFDGRPVTRRRRKA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 83 RRKlvghNVSMIFQEPQSCLDPSERVGRQLMQniPAWTykgrwwQRFGWRKRRAIELLHRVGIkdHKDAMRSFPYELTEG 162
Cdd:COG1124 77 FRR----RVQMVFQDPYASLHPRHTVDRILAE--PLRI------HGLPDREERIAELLEQVGL--PPSFLDRYPHQLSGG 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 163 ECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAP 242
Cdd:COG1124 143 QRQRVAIARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELT 222
|
250 260
....*....|....*....|...
gi 1277489719 243 SKELVTMPHHPYTQALIRAIPDF 265
Cdd:COG1124 223 VADLLAGPKHPYTRELLAASLAF 245
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
2-286 |
5.36e-70 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 226.32 E-value: 5.36e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEFKTGdeWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTaDRMRFDDIDLLRLSAR 81
Cdd:COG1123 3 PLLEVRDLSVRYPGG--DVPAVDGVSLTIAPGETVALVGESGSGKSTLALALMGLLPHGGRIS-GEVLLDGRDLLELSEA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 82 ERrklvGHNVSMIFQEPQSCLDPSeRVGRQLmqnipAWTYKGRWWQRfGWRKRRAIELLHRVGIKDhkdAMRSFPYELTE 161
Cdd:COG1123 80 LR----GRRIGMVFQDPMTQLNPV-TVGDQI-----AEALENLGLSR-AEARARVLELLEAVGLER---RLDRYPHQLSG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETA 241
Cdd:COG1123 146 GQRQRVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDG 225
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1277489719 242 PSKELVTMPhhpytQALiRAIPDFGSAMPHKSRlnTLPGAIPLLE 286
Cdd:COG1123 226 PPEEILAAP-----QAL-AAVPRLGAARGRAAP--AAAAAEPLLE 262
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-286 |
1.44e-60 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 202.24 E-value: 1.44e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRV-TADRMRFDDIDLLRLS 79
Cdd:PRK15134 3 QPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVyPSGDIRFHGESLLHAS 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 80 ARERRKLVGHNVSMIFQEPQSCLDPSERVGRQLmqnipawtYKGRWWQRfGWRKRRA----IELLHRVGIKDHKDAMRSF 155
Cdd:PRK15134 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQL--------YEVLSLHR-GMRREAArgeiLNCLDRVGIRQAAKRLTDY 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCG 235
Cdd:PRK15134 154 PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNG 233
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1277489719 236 QTVETAPSKELVTMPHHPYTQALIRAIPDfGSAMPhksrlntLP-GAIPLLE 286
Cdd:PRK15134 234 RCVEQNRAATLFSAPTHPYTQKLLNSEPS-GDPVP-------LPePASPLLD 277
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
2-321 |
1.93e-57 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 188.76 E-value: 1.93e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEF--KTGDEW-------VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKdnwrVTADRMRFDD 72
Cdd:PRK15079 7 VLLEVADLKVHFdiKDGKQWfwqppktLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK----ATDGEVAWLG 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 73 IDLLRLSARERRKlVGHNVSMIFQEPQSCLDPSERVGRQLMQniPAWTYKGRWWQrfGWRKRRAIELLHRVGIKdhKDAM 152
Cdd:PRK15079 83 KDLLGMKDDEWRA-VRSDIQMIFQDPLASLNPRMTIGEIIAE--PLRTYHPKLSR--QEVKDRVKAMMLKVGLL--PNLI 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 153 RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVL 232
Cdd:PRK15079 156 NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVM 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 233 YCGQTVETAPSKELVTMPHHPYTQALIRA--IPDfgsamPHKSRLNT---LPGAIPLLEQLPIGCRLGPRCPYAQRECIV 307
Cdd:PRK15079 236 YLGHAVELGTYDEVYHNPLHPYTKALMSAvpIPD-----PDLERNKTiqlLEGELPSPINPPSGCVFRTRCPIAGPECAK 310
|
330
....*....|....*
gi 1277489719 308 T-PRLTGAKNHLYAC 321
Cdd:PRK15079 311 TrPVLEGSFRHAVSC 325
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
2-264 |
5.97e-56 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 189.90 E-value: 5.97e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEF-------KTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKdnwrvTADRMRFDDID 74
Cdd:COG4172 274 PLLEARDLKVWFpikrglfRRTVGHVKAVDGVSLTLRRGETLGLVGESGSGKSTLGLALLRLIP-----SEGEIRFDGQD 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 75 LLRLSARERRKLvGHNVSMIFQEPQSCLDPSERVGRqlmqnI---------PAWTYKGrwwqrfgwRKRRAIELLHRVGI 145
Cdd:COG4172 349 LDGLSRRALRPL-RRRMQVVFQDPFGSLSPRMTVGQ-----IiaeglrvhgPGLSAAE--------RRARVAEALEEVGL 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 146 KdhKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQW 225
Cdd:COG4172 415 D--PAARHRYPHEFSGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREHGLAYLFISHDLAVVRAL 492
|
250 260 270
....*....|....*....|....*....|....*....
gi 1277489719 226 ADKINVLYCGQTVETAPSKELVTMPHHPYTQALIRAIPD 264
Cdd:COG4172 493 AHRVMVMKDGKVVEQGPTEQVFDAPQHPYTRALLAAAPL 531
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
1-322 |
2.43e-52 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 175.15 E-value: 2.43e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLT--IEFKTG----DEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDID 74
Cdd:PRK11308 3 QPLLQAIDLKkhYPVKRGlfkpERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP----TGGELYYQGQD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 75 LLRlSARERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWTYKGRwwqrfGWRKRRAIELLHRVGIK-DHKDamr 153
Cdd:PRK11308 79 LLK-ADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSA-----AERREKALAMMAKVGLRpEHYD--- 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 154 SFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLY 233
Cdd:PRK11308 150 RYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMY 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 234 CGQTVETAPSKELVTMPHHPYTQALIRAIPDFGSAmPHKSRLnTLPGAIPLLEQLPIGCRLGPRCPYAQREC-IVTPRLT 312
Cdd:PRK11308 230 LGRCVEKGTKEQIFNNPRHPYTQALLSATPRLNPD-DRRERI-KLTGELPSPLNPPPGCAFNARCPRAFGRCrQEQPQLR 307
|
330
....*....|
gi 1277489719 313 GAKNHLYACH 322
Cdd:PRK11308 308 DYDGRLVACF 317
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
2-229 |
4.56e-50 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 166.37 E-value: 4.56e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkDnwRVTADRMRFDDIDLLRLSAR 81
Cdd:COG1136 3 PLLELRNLTKSYGTGEGEVTALRGVSLSIEAGEFVAIVGPSGSGKSTLLNILGGL--D--RPTSGEVLIDGQDISSLSER 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 82 ERRKLVGHNVSMIFQEPQscLDPSERVgrqlMQNI--PAwTYKGRWWQRfgwRKRRAIELLHRVGIKDHKDAmrsFPYEL 159
Cdd:COG1136 79 ELARLRRRHIGFVFQFFN--LLPELTA----LENValPL-LLAGVSRKE---RRERARELLERVGLGDRLDH---RPSQL 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 160 TEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSqWADKI 229
Cdd:COG1136 146 SGGQQQRVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPELAA-RADRV 214
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
3-279 |
6.05e-50 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 175.81 E-value: 6.05e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 3 LLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICG-VNKDNWRVTADRMRFDD-----IDLL 76
Cdd:PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRlLEQAGGLVQCDKMLLRRrsrqvIELS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 77 RLSARERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIpawtykgRWWQRFGWRK--RRAIELLHRVGIKDHKDAMRS 154
Cdd:PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESI-------RLHQGASREEamVEAKRMLDQVRIPEAQTILSR 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYC 234
Cdd:PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ 244
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1277489719 235 GQTVETAPSKELVTMPHHPYTQALIRAIPDF----GSAMPHKSRLNTLP 279
Cdd:PRK10261 245 GEAVETGSVEQIFHAPQHPYTRALLAAVPQLgamkGLDYPRRFPLISLE 293
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
4-232 |
2.25e-48 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 161.50 E-value: 2.25e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNkdnwRVTADRMRFDDIDLLRLSARER 83
Cdd:cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD----RPTSGEVRVDGTDISKLSEKEL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 RKLVGHNVSMIFQEP-----QSCLDpservgrqlmqNI--PAWTYKGRWWQrfgwRKRRAIELLHRVGIKDHKDAmrsFP 156
Cdd:cd03255 77 AAFRRRHIGFVFQSFnllpdLTALE-----------NVelPLLLAGVPKKE----RRERAEELLERVGLGDRLNH---YP 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1277489719 157 YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQwADKINVL 232
Cdd:cd03255 139 SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEY-ADRIIEL 213
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
6-286 |
9.49e-46 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 158.32 E-value: 9.49e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 6 IRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNkdnwRVTADRMRFDDIDLLRLSARERRK 85
Cdd:COG1135 4 LENLSKTFPTKGGPVTALDDVSLTIEKGEIFGIIGYSGAGKSTLIRCINLLE----RPTSGSVLVDGVDLTALSERELRA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 86 LvGHNVSMIFQepQSCLDPServgRQLMQNI--P---AwtykgrwwqrfGW----RKRRAIELLHRVGIKDHKDAmrsFP 156
Cdd:COG1135 80 A-RRKIGMIFQ--HFNLLSS----RTVAENValPleiA-----------GVpkaeIRKRVAELLELVGLSDKADA---YP 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 157 YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQ 236
Cdd:COG1135 139 SQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGR 218
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1277489719 237 TVETAPSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRLNTLPGAIPLLE 286
Cdd:COG1135 219 IVEQGPVLDVFANPQSELTRRFLPTVLNDELPEELLARLREAAGGGRLVR 268
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
6-250 |
1.58e-41 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 144.26 E-value: 1.58e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 6 IRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNkdnwRVTADRMRFDDIDLLRLSARERRK 85
Cdd:cd03258 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE----RPTSGSVLVDGTDLTLLSGKELRK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 86 LvGHNVSMIFQepQSCLDPSERVgrqlMQNIpawTYKGRWWqrfGW----RKRRAIELLHRVGIKDHKDAmrsFPYELTE 161
Cdd:cd03258 80 A-RRRIGMIFQ--HFNLLSSRTV----FENV---ALPLEIA---GVpkaeIEERVLELLELVGLEDKADA---YPAQLSG 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETA 241
Cdd:cd03258 144 GQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEG 223
|
....*....
gi 1277489719 242 PSKELVTMP 250
Cdd:cd03258 224 TVEEVFANP 232
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
6-232 |
1.24e-40 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 141.45 E-value: 1.24e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 6 IRNLTIEFKTGDEwvKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDLLRLSARERRK 85
Cdd:cd03225 2 LKNLSFSYPDGAR--PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP----TSGEVLVDGKDLTKLSLKELRR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 86 LVGhnvsMIFQEPQS---CLDPSERVgrqlmqnipAWTYKGRWWQRfGWRKRRAIELLHRVGIKDHKDamRSfPYELTEG 162
Cdd:cd03225 76 KVG----LVFQNPDDqffGPTVEEEV---------AFGLENLGLPE-EEIEERVEEALELVGLEGLRD--RS-PFTLSGG 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 163 ECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQnSNTTILLISHDLQMLSQWADKINVL 232
Cdd:cd03225 139 QKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA-EGKTIIIVTHDLDLLLELADRVIVL 207
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
5-285 |
1.79e-40 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 144.56 E-value: 1.79e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 5 DIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNkdnwRVTADRMRFDDIDLLRLSARERR 84
Cdd:PRK11153 3 ELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE----RPTSGRVLVDGQDLTALSEKELR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 85 KLvGHNVSMIFQEPQscLDPServgRQLMQNI--P---AwtykgrwwqrfGWRK----RRAIELLHRVGIKDHKDAmrsF 155
Cdd:PRK11153 79 KA-RRQIGMIFQHFN--LLSS----RTVFDNValPlelA-----------GTPKaeikARVTELLELVGLSDKADR---Y 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCG 235
Cdd:PRK11153 138 PAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAG 217
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1277489719 236 QTVETAPSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRLNTLP--GAIPLL 285
Cdd:PRK11153 218 RLVEQGTVSEVFSHPKHPLTREFIQSTLHLDLPEDYLARLQAEPttGSGPLL 269
|
|
| LivG |
COG0411 |
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid ... |
1-236 |
4.70e-39 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivG [Amino acid transport and metabolism];
Pssm-ID: 440180 [Multi-domain] Cd Length: 257 Bit Score: 138.63 E-value: 4.70e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFKtGdewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnWRVTADRMRFDDIDLLRLSA 80
Cdd:COG0411 2 DPLLEVRGLTKRFG-G---LVAVDDVSLEVERGEIVGLIGPNGAGKTTLFNLITGF----YRPTSGRILFDGRDITGLPP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERRKLvGhnVSMIFQEPQ-----SCLDpSERVGRQLMQNIPAWTYKGRWWQRFGWRKR---RAIELLHRVGIKDHKDAM 152
Cdd:COG0411 74 HRIARL-G--IARTFQNPRlfpelTVLE-NVLVAAHARLGRGLLAALLRLPRARREEREareRAEELLERVGLADRADEP 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 153 rsfPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVL 232
Cdd:COG0411 150 ---AGNLSYGQQRRLEIARALATEPKLLLLDEPAAGLNPEETEELAELIRRLRDERGITILLIEHDMDLVMGLADRIVVL 226
|
....
gi 1277489719 233 YCGQ 236
Cdd:COG0411 227 DFGR 230
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
1-262 |
1.30e-38 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 137.90 E-value: 1.30e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFKTG-----DEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDL 75
Cdd:PRK10419 1 MTLLNVSGLSHHYAHGglsgkHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP----SQGNVSWRGEPL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 76 LRLSaRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWTYKGRwwqrfGWRKRRAIELLHRVGIKDhKDAMRsF 155
Cdd:PRK10419 77 AKLN-RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDK-----AERLARASEMLRAVDLDD-SVLDK-R 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCG 235
Cdd:PRK10419 149 PPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNG 228
|
250 260
....*....|....*....|....*..
gi 1277489719 236 QTVETAPSKELVTMpHHPYTQALIRAI 262
Cdd:PRK10419 229 QIVETQPVGDKLTF-SSPAGRVLQNAV 254
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
1-261 |
2.70e-38 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 136.37 E-value: 2.70e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MP-LLDIRNLTIEFKtgdewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLS 79
Cdd:PRK10418 1 MPqQIELRNIALQAA-----QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 80 ARerrklvGHNVSMIFQEPQSCLDPServgrQLMQNIPAWTYKGRWWQRfgwRKRRAIELLHRVGIKDHKDAMRSFPYEL 159
Cdd:PRK10418 76 LR------GRKIATIMQNPRSAFNPL-----HTMHTHARETCLALGKPA---DDATLTAALEAVGLENAARVLKLYPFEM 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 160 TEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVE 239
Cdd:PRK10418 142 SGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE 221
|
250 260
....*....|....*....|..
gi 1277489719 240 TAPSKELVTMPHHPYTQALIRA 261
Cdd:PRK10418 222 QGDVETLFNAPKHAVTRSLVSA 243
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
23-187 |
4.55e-38 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 132.77 E-value: 4.55e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 23 VDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDLLRLSARERRKlvghNVSMIFQEPQscL 102
Cdd:pfam00005 1 LKNVSLTLNPGEILALVGPNGAGKSTLLKLIAGLLSP----TEGTILLDGQDLTDDERKSLRK----EIGYVFQDPQ--L 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 103 DPSERVGRQLMQNIPAWTYKGRWwqrfgwRKRRAIELLHRVGIKD-HKDAMRSFPYELTEGECQKVMIAIALANQPRLLI 181
Cdd:pfam00005 71 FPRLTVRENLRLGLLLKGLSKRE------KDARAEEALEKLGLGDlADRPVGERPGTLSGGQRQRVAIARALLTKPKLLL 144
|
....*.
gi 1277489719 182 ADEPTN 187
Cdd:pfam00005 145 LDEPTA 150
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
3-248 |
1.20e-37 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 134.79 E-value: 1.20e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 3 LLDIRNLTIEFktGDEWVkaVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKdnwrVTADRMRFDDIDLLRLSARE 82
Cdd:COG1120 1 MLEAENLSVGY--GGRPV--LDDVSLSLPPGEVTALLGPNGSGKSTLLRALAGLLK----PSSGEVLLDGRDLASLSRRE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 83 RRKLVGhnvsMIFQEPQSclDPSERV------GRQlmqnipAWTykgRWWQRFGWRKRRAI-ELLHRVGIKDHKDamRSF 155
Cdd:COG1120 73 LARRIA----YVPQEPPA--PFGLTVrelvalGRY------PHL---GLFGRPSAEDREAVeEALERTGLEHLAD--RPV 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 156 PyELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCG 235
Cdd:COG1120 136 D-ELSGGERQRVLIARALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDG 214
|
250
....*....|...
gi 1277489719 236 QTVETAPSKELVT 248
Cdd:COG1120 215 RIVAQGPPEEVLT 227
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
2-282 |
1.31e-36 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 138.83 E-value: 1.31e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEF--KTG-----DEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICG-VNKDNWRVTADRMRFDDI 73
Cdd:PRK10261 312 PILQVRNLVTRFplRSGllnrvTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRlVESQGGEIIFNGQRIDTL 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 74 DLLRLSARERrklvghNVSMIFQEPQSCLDPSERVGRQLMQniPAWTYkgRWWQRFGWRKRRAiELLHRVGIK-DHkdAM 152
Cdd:PRK10261 392 SPGKLQALRR------DIQFIFQDPYASLDPRQTVGDSIME--PLRVH--GLLPGKAAAARVA-WLLERVGLLpEH--AW 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 153 RsFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVL 232
Cdd:PRK10261 459 R-YPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVM 537
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1277489719 233 YCGQTVETAPSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRL---NTLPGAI 282
Cdd:PRK10261 538 YLGQIVEIGPRRAVFENPQHPYTRKLMAAVPVADPSRQRPQRVllsDDLPSNI 590
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
4-246 |
1.06e-35 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 129.22 E-value: 1.06e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTGdewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNkdnwRVTADRMRFDDIDLLRLSARER 83
Cdd:cd03256 1 IEVENLSKTYPNG---KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV----EPTSGSVLIDGTDINKLKGKAL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 RKLVGHnVSMIFQEPQscldpseRVGRQ-LMQNI--PAWTYKGRWWQRFGW----RKRRAIELLHRVGIKDHKDAMRSfp 156
Cdd:cd03256 74 RQLRRQ-IGMIFQQFN-------LIERLsVLENVlsGRLGRRSTWRSLFGLfpkeEKQRALAALERVGLLDKAYQRAD-- 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 157 yELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQ 236
Cdd:cd03256 144 -QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGR 222
|
250
....*....|
gi 1277489719 237 TVETAPSKEL 246
Cdd:cd03256 223 IVFDGPPAEL 232
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
4-236 |
1.44e-34 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 126.01 E-value: 1.44e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFktGDewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNkdnwRVTADRMRFDDIDLLRLSARER 83
Cdd:cd03219 1 LEVRGLTKRF--GG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL----RPTSGSVLFDGEDITGLPPHEI 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 RKLvGhnVSMIFQEPQ-----SCLDpSERVGRQLMQNIPAWTykGRWWQRFGWRKRRAIELLHRVGIKDHKDAMrsfPYE 158
Cdd:cd03219 73 ARL-G--IGRTFQIPRlfpelTVLE-NVMVAAQARTGSGLLL--ARARREEREARERAEELLERVGLADLADRP---AGE 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1277489719 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQnSNTTILLISHDLQMLSQWADKINVLYCGQ 236
Cdd:cd03219 144 LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDMDVVMSLADRVTVLDQGR 220
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
2-260 |
2.70e-34 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 131.37 E-value: 2.70e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEF--------KTGDEWVkAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICgvnkdnwRVTADR--MRFD 71
Cdd:PRK15134 274 PLLDVEQLQVAFpirkgilkRTVDHNV-VVKNISFTLRPGETLGLVGESGSGKSTTGLALL-------RLINSQgeIWFD 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 72 DIDLLRLSareRRKL--VGHNVSMIFQEPQSCLDPSERV------GRQLMQniPAWTYKGrwwqrfgwRKRRAIELLHRV 143
Cdd:PRK15134 346 GQPLHNLN---RRQLlpVRHRIQVVFQDPNSSLNPRLNVlqiieeGLRVHQ--PTLSAAQ--------REQQVIAVMEEV 412
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 144 GIKdhKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLS 223
Cdd:PRK15134 413 GLD--PETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVR 490
|
250 260 270
....*....|....*....|....*....|....*..
gi 1277489719 224 QWADKINVLYCGQTVETAPSKELVTMPHHPYTQALIR 260
Cdd:PRK15134 491 ALCHQVIVLRQGEVVEQGDCERVFAAPQQEYTRQLLA 527
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
6-239 |
2.50e-33 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 122.47 E-value: 2.50e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 6 IRNLTIEFKTGdewVKAVDRVSMTLTEGEIRGLVGESGSGKS----LIAKAIcgvnkdnwRVTADRMRFDDIDLLRLSAR 81
Cdd:COG2884 4 FENVSKRYPGG---REALSDVSLEIEKGEFVFLTGPSGAGKStllkLLYGEE--------RPTSGQVLVNGQDLSRLKRR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 82 E----RRKLvGhnvsMIFQEPQscLDPServgRQLMQNIpawtykgrwwqRF-----GWR----KRRAIELLHRVGIKDH 148
Cdd:COG2884 73 EipylRRRI-G----VVFQDFR--LLPD----RTVYENV-----------ALplrvtGKSrkeiRRRVREVLDLVGLSDK 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 149 KDAMrsfPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNsNTTILLISHDLQMLSQWADK 228
Cdd:COG2884 131 AKAL---PHELSGGEQQRVAIARALVNRPELLLADEPTGNLDPETSWEIMELLEEINRR-GTTVLIATHDLELVDRMPKR 206
|
250
....*....|.
gi 1277489719 229 INVLYCGQTVE 239
Cdd:COG2884 207 VLELEDGRLVR 217
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
4-246 |
5.37e-33 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 122.09 E-value: 5.37e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTgdewVKAVDRVSMTLTEGEIRGLVGESGSGKS-LIaKAICGVnkdnWRVTADRMRFDDIDLLRLSARE 82
Cdd:COG1131 1 IEVRGLTKRYGD----KTALDGVSLTVEPGEIFGLLGPNGAGKTtTI-RMLLGL----LRPTSGEVRVLGEDVARDPAEV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 83 RRKlvghnVSMIFQEPqsCLDPSERVgRQLMQNIpAWTYKGRWWQrfgwRKRRAIELLHRVGIKDHKDA--------MRs 154
Cdd:COG1131 72 RRR-----IGYVPQEP--ALYPDLTV-RENLRFF-ARLYGLPRKE----ARERIDELLELFGLTDAADRkvgtlsggMK- 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 155 fpyeltegecQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQnSNTTILLISHDLQMLSQWADKINVLYC 234
Cdd:COG1131 138 ----------QRLGLALALLHDPELLILDEPTSGLDPEARRELWELLRELAA-EGKTVLLSTHYLEEAERLCDRVAIIDK 206
|
250
....*....|..
gi 1277489719 235 GQTVETAPSKEL 246
Cdd:COG1131 207 GRIVADGTPDEL 218
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
1-246 |
5.60e-33 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 127.44 E-value: 5.60e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFkTGdewVKAVDRVSMTLTEGEIRGLVGESGSGKS-LIaKAICGVnkdnwrVTAD--RMRFDDIDLLR 77
Cdd:COG1129 2 EPLLEMRGISKSF-GG---VKALDGVSLELRPGEVHALLGENGAGKStLM-KILSGV------YQPDsgEILLDGEPVRF 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 78 LSARERRKLvGhnVSMIFQEPQSCLDPSerVgrqlMQNIpawtYKGRWWQRFG---WRK--RRAIELLHRVGIKDHKDAM 152
Cdd:COG1129 71 RSPRDAQAA-G--IAIIHQELNLVPNLS--V----AENI----FLGREPRRGGlidWRAmrRRARELLARLGLDIDPDTP 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 153 RSfpyELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLnQNSNTTILLISHDLQMLSQWADKINVL 232
Cdd:COG1129 138 VG---DLSVAQQQLVEIARALSRDARVLILDEPTASLTEREVERLFRIIRRL-KAQGVAIIYISHRLDEVFEIADRVTVL 213
|
250
....*....|....
gi 1277489719 233 YCGQTVETAPSKEL 246
Cdd:COG1129 214 RDGRLVGTGPVAEL 227
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
5-238 |
3.64e-32 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 118.31 E-value: 3.64e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 5 DIRNLTieFKTGDEWVkaVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKdnwrVTADRMRFDDIDLLRLSARERR 84
Cdd:cd03214 1 EVENLS--VGYGGRTV--LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK----PSSGEILLDGKDLASLSPKELA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 85 KLVGHnVsmifqePQScldpservgrqlmqnipawtykgrwwqrfgwrkrraielLHRVGIKDHKDamRSFPyELTEGEC 164
Cdd:cd03214 73 RKIAY-V------PQA---------------------------------------LELLGLAHLAD--RPFN-ELSGGER 103
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1277489719 165 QKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTV 238
Cdd:cd03214 104 QRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
4-251 |
3.90e-32 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 119.91 E-value: 3.90e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFktGDEWVkaVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNkdnwRVTADRMRFDDIDLLRLSARER 83
Cdd:cd03261 1 IELRGLTKSF--GGRTV--LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL----RPDSGEVLIDGEDISGLSEAEL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 RKLvGHNVSMIFQepQSCLDPS----ERVGRQLMQNipawTYKGRWWQRfgwrkRRAIELLHRVGIKDHKDAMrsfPYEL 159
Cdd:cd03261 73 YRL-RRRMGMLFQ--SGALFDSltvfENVAFPLREH----TRLSEEEIR-----EIVLEKLEAVGLRGAEDLY---PAEL 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 160 TEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVE 239
Cdd:cd03261 138 SGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVA 217
|
250
....*....|..
gi 1277489719 240 TAPSKELVTMPH 251
Cdd:cd03261 218 EGTPEELRASDD 229
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
2-259 |
2.09e-31 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 117.77 E-value: 2.09e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEFktGDEWVkaVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnWRVTADRMRFDDIDLLRLSAR 81
Cdd:COG1127 4 PMIEVRNLTKSF--GDRVV--LDGVSLDVPRGEILAIIGGSGSGKSVLLKLIIGL----LRPDSGEILVDGQDITGLSEK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 82 ERRKLVgHNVSMIFQepQSCLDPSERVGrqlmQNIpawtykgrwwqRFGWR----------KRRAIELLHRVGIKDHKDA 151
Cdd:COG1127 76 ELYELR-RRIGMLFQ--GGALFDSLTVF----ENV-----------AFPLRehtdlseaeiRELVLEKLELVGLPGAADK 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 152 MrsfPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINV 231
Cdd:COG1127 138 M---PSELSGGMRKRVALARALALDPEILLYDEPTAGLDPITSAVIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAV 214
|
250 260
....*....|....*....|....*...
gi 1277489719 232 LYCGQTVETAPSKELVTMPhHPYTQALI 259
Cdd:COG1127 215 LADGKIIAEGTPEELLASD-DPWVRQFL 241
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
2-243 |
8.63e-31 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 115.99 E-value: 8.63e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKS----LIAkaicGVNkdnwRVTADRMRFDDIDLLR 77
Cdd:COG4181 7 PIIELRGLTKTVGTGAGELTILKGISLEVEAGESVAIVGASGSGKStllgLLA----GLD----RPTSGTVRLAGQDLFA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 78 LSARERRKLVGHNVSMIFQEPQscLDPS----ERVGrqlmqnIPAwtykgrwwQRFGWR--KRRAIELLHRVGIKDHKDA 151
Cdd:COG4181 79 LDEDARARLRARHVGFVFQSFQ--LLPTltalENVM------LPL--------ELAGRRdaRARARALLERVGLGHRLDH 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 152 mrsFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQmLSQWADKINV 231
Cdd:COG4181 143 ---YPAQLSGGEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPA-LAARCDRVLR 218
|
250
....*....|..
gi 1277489719 232 LYCGQTVETAPS 243
Cdd:COG4181 219 LRAGRLVEDTAA 230
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
2-262 |
1.55e-30 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 116.08 E-value: 1.55e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEFKTGdewvKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICG-VNKDNWRVTADRMRFDDIDLLRLSA 80
Cdd:TIGR02323 2 PLLQVSGLSKSYGGG----KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGrLAPDHGTATYIMRSGAELELYQLSE 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERRKLVGHNVSMIFQEPQSCL----DPSERVGRQLMQnIPAwtykgrwwQRFGWRKRRAIELLHRVGIKdhKDAMRSFP 156
Cdd:TIGR02323 78 AERRRLMRTEWGFVHQNPRDGLrmrvSAGANIGERLMA-IGA--------RHYGNIRATAQDWLEEVEID--PTRIDDLP 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 157 YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQ 236
Cdd:TIGR02323 147 RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGR 226
|
250 260
....*....|....*....|....*.
gi 1277489719 237 TVETAPSKELVTMPHHPYTQALIRAI 262
Cdd:TIGR02323 227 VVESGLTDQVLDDPQHPYTQLLVSSI 252
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
4-229 |
3.47e-30 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 113.76 E-value: 3.47e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTieFKTGDEWVkaVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICgvnkDNWRVTADRMRFDDIDLLRLSARE- 82
Cdd:COG4619 1 LELEGLS--FRVGGKPI--LSPVSLTLEAGECVAITGPSGSGKSTLLRALA----DLDPPTSGEIYLDGKPLSAMPPPEw 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 83 RRKlvghnVSMIFQEPQscLdPSERVGRQLmqnIPAWTYKGRWWQRfgwrkRRAIELLHRVGIKDH---KDAmrsfpYEL 159
Cdd:COG4619 73 RRQ-----VAYVPQEPA--L-WGGTVRDNL---PFPFQLRERKFDR-----ERALELLERLGLPPDildKPV-----ERL 131
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 160 TEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKI 229
Cdd:COG4619 132 SGGERQRLALIRALLLQPDVLLLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRV 201
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
4-246 |
4.37e-30 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 114.20 E-value: 4.37e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFktGDewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTAD---RMRFDDIDLLRLSA 80
Cdd:cd03260 1 IELRDLNVYY--GD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEgevLLDGKDIYDLDVDV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERRKLVGhnvsMIFQEPqSCLDPServgrqLMQNIpAWTYK--GRWWQRFgwRKRRAIELLHRVGIKDH-KDamRSFPY 157
Cdd:cd03260 77 LELRRRVG----MVFQKP-NPFPGS------IYDNV-AYGLRlhGIKLKEE--LDERVEEALRKAALWDEvKD--RLHAL 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQnsNTTILLISHDLQMLSQWADKINVLYCGQT 237
Cdd:cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--EYTIVIVTHNMQQAARVADRTAFLLNGRL 218
|
....*....
gi 1277489719 238 VETAPSKEL 246
Cdd:cd03260 219 VEFGPTEQI 227
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
6-236 |
8.50e-30 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 111.18 E-value: 8.50e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 6 IRNLTIEFKTGdewvKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnWRVTADRMRFDDIDLLRLSARERRK 85
Cdd:cd00267 2 IENLSFRYGGR----TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL----LKPTSGEILIDGKDIAKLPLEELRR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 86 LVGhnvsMIFQepqscldpservgrqlmqnipawtykgrwwqrfgwrkrraiellhrvgikdhkdamrsfpyeLTEGECQ 165
Cdd:cd00267 74 RIG----YVPQ--------------------------------------------------------------LSGGQRQ 87
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1277489719 166 KVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQnSNTTILLISHDLQMLSQWADKINVLYCGQ 236
Cdd:cd00267 88 RVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAE-EGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-219 |
1.96e-29 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 113.26 E-value: 1.96e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDLLRLSA 80
Cdd:COG1116 5 APALELRGVSKRFPTGGGGVTALDDVSLTVAAGEFVALVGPSGCGKSTLLRLIAGLEKP----TSGEVLVDGKPVTGPGP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RerrklvghnVSMIFQEPQscldpservgrqLM------QNI--PAwtyKGRWWQRfGWRKRRAIELLHRVGIKDHKDAm 152
Cdd:COG1116 81 D---------RGVVFQEPA------------LLpwltvlDNValGL---ELRGVPK-AERRERARELLELVGLAGFEDA- 134
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1277489719 153 rsFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDL 219
Cdd:COG1116 135 --YPHQLSGGMRQRVAIARALANDPEVLLMDEPFGALDALTRERLQDELLRLWQETGKTVLFVTHDV 199
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
22-229 |
2.81e-29 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 111.47 E-value: 2.81e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnwrVTADRMRfddIDLLRLSARERRKLVGHnVsmifqePQSC 101
Cdd:cd03235 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL------LKPTSGS---IRVFGKPLEKERKRIGY-V------PQRR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 102 -LDPSERV-GRQLMQNipAWTYKGRWWQRFGW-RKRRAIELLHRVGIKDHKDamRSFPyELTEGECQKVMIAIALANQPR 178
Cdd:cd03235 78 sIDRDFPIsVRDVVLM--GLYGHKGLFRRLSKaDKAKVDEALERVGLSELAD--RQIG-ELSGGQQQRVLLARALVQDPD 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1277489719 179 LLIADEPTNSMEPTTQAQIFRLLTRLNQNsNTTILLISHDLQMLSQWADKI 229
Cdd:cd03235 153 LLLLDEPFAGVDPKTQEDIYELLRELRRE-GMTILVVTHDLGLVLEYFDRV 202
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
4-232 |
5.12e-29 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 111.02 E-value: 5.12e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNkdnwRVTADRMRFDDidllrlsarER 83
Cdd:cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE----RPTSGEVLVDG---------EP 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 RKLVGHNVSMIFQEPqsCLDPSERVgrqlMQNIpAWTYKGRWWQRfGWRKRRAIELLHRVGIKDHKDAmrsFPYELTEGE 163
Cdd:cd03293 68 VTGPGPDRGYVFQQD--ALLPWLTV----LDNV-ALGLELQGVPK-AEARERAEELLELVGLSGFENA---YPHQLSGGM 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1277489719 164 CQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQ---MLsqwADKINVL 232
Cdd:cd03293 137 RQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDeavFL---ADRVVVL 205
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
3-269 |
1.52e-28 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 111.03 E-value: 1.52e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 3 LLDIRNL--TIEFKTG---DEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDLL- 76
Cdd:PRK15112 4 LLEVRNLskTFRYRTGwfrRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP----TSGELLIDDHPLHf 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 77 -RLSARERRklvghnVSMIFQEPQSCLDPSERVGRQLmqNIPAWTYKGRWWQRfgwRKRRAIELLHRVGIKdhKDAMRSF 155
Cdd:PRK15112 80 gDYSYRSQR------IRMIFQDPSTSLNPRQRISQIL--DFPLRLNTDLEPEQ---REKQIIETLRQVGLL--PDHASYY 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCG 235
Cdd:PRK15112 147 PHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQG 226
|
250 260 270
....*....|....*....|....*....|....
gi 1277489719 236 QTVETAPSKELVTMPHHPYTQALIRAipDFGSAM 269
Cdd:PRK15112 227 EVVERGSTADVLASPLHELTKRLIAG--HFGEAL 258
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
4-259 |
4.09e-28 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 109.31 E-value: 4.09e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTGDewvKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAIcgvnkdNWRVTAD--RMRFDDIDLLRLSAR 81
Cdd:cd03295 1 IEFENVTKRYGGGK---KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMI------NRLIEPTsgEIFIDGEDIREQDPV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 82 ERRKLVGHnvsmIFQepQSCLDPSERVgrqlMQNIpAWTYKGRWWQRfGWRKRRAIELLHRVGIKDHKDAMRsFPYELTE 161
Cdd:cd03295 72 ELRRKIGY----VIQ--QIGLFPHMTV----EENI-ALVPKLLKWPK-EKIRERADELLALVGLDPAEFADR-YPHELSG 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETA 241
Cdd:cd03295 139 GQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVG 218
|
250
....*....|....*...
gi 1277489719 242 PSKELVTMPHHPYTQALI 259
Cdd:cd03295 219 TPDEILRSPANDFVAEFV 236
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-262 |
1.07e-27 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 108.47 E-value: 1.07e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFKTGdewvKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGvnkdnwRVTAD------RMR-FDDI 73
Cdd:PRK11701 4 QPLLSVRGLTKLYGPR----KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSA------RLAPDagevhyRMRdGQLR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 74 DLLRLSARERRKLVGHNVSMIFQEPQSCLDPS----ERVGRQLMqnipawtykGRWWQRFGWRKRRAIELLHRVGIkdhk 149
Cdd:PRK11701 74 DLYALSEAERRRLLRTEWGFVHQHPRDGLRMQvsagGNIGERLM---------AVGARHYGDIRATAGDWLERVEI---- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 150 DAMR--SFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWAD 227
Cdd:PRK11701 141 DAARidDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAH 220
|
250 260 270
....*....|....*....|....*....|....*
gi 1277489719 228 KINVLYCGQTVETAPSKELVTMPHHPYTQALIRAI 262
Cdd:PRK11701 221 RLLVMKQGRVVESGLTDQVLDDPQHPYTQLLVSSV 255
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
22-263 |
2.13e-27 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 108.11 E-value: 2.13e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKdnwrVTADRMRFDDIDLLRLSARERRKLVGHNVSMIFQE---- 97
Cdd:cd03294 39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE----PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSfall 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 98 PQ-SCLDPSErVGRQLmQNIPAWTykgrwwqrfgwRKRRAIELLHRVGIKDHKDamrSFPYELTEGECQKVMIAIALANQ 176
Cdd:cd03294 115 PHrTVLENVA-FGLEV-QGVPRAE-----------REERAAEALELVGLEGWEH---KYPDELSGGMQQRVGLARALAVD 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 177 PRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTMPHHPYTQ 256
Cdd:cd03294 179 PDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVR 258
|
....*..
gi 1277489719 257 ALIRAIP 263
Cdd:cd03294 259 EFFRGVD 265
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
4-247 |
4.35e-27 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 111.85 E-value: 4.35e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTieFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnWRVTADRMRFDDIDLLRLSARER 83
Cdd:COG2274 474 IELENVS--FRYPGDSPPVLDNISLTIKPGERVAIVGRSGSGKSTLLKLLLGL----YEPTSGRILIDGIDLRQIDPASL 547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 RKlvghNVSMIFQEPQ----ScldpservgrqLMQNIpawtykgrwwqRFgWRKR----RAIELLHRVGIkdHKDAMRsF 155
Cdd:COG2274 548 RR----QIGVVLQDVFlfsgT-----------IRENI-----------TL-GDPDatdeEIIEAARLAGL--HDFIEA-L 597
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 156 P--YE---------LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQnsNTTILLISHDLQMLSQ 224
Cdd:COG2274 598 PmgYDtvvgeggsnLSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLLK--GRTVIIIAHRLSTIRL 675
|
250 260
....*....|....*....|...
gi 1277489719 225 wADKINVLYCGQTVETAPSKELV 247
Cdd:COG2274 676 -ADRIIVLDKGRIVEDGTHEELL 697
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
4-236 |
1.34e-26 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 103.25 E-value: 1.34e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTGdewvKAVDRVSMTLTEGEIRGLVGESGSGKS-LIaKAICGVNKdnwrVTADRMRFDDIDLlrlsaRE 82
Cdd:cd03230 1 IEVRNLSKRYGKK----TALDDISLTVEKGEIYGLLGPNGAGKTtLI-KIILGLLK----PDSGEIKVLGKDI-----KK 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 83 RRKLVGHNVSMIFQEPQscldpservgrqlmqNIPAWTykgrwwqrfgwrkrrAIELLhrvgikdhkdamrsfpyELTEG 162
Cdd:cd03230 67 EPEEVKRRIGYLPEEPS---------------LYENLT---------------VRENL-----------------KLSGG 99
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1277489719 163 ECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNsNTTILLISHDLQMLSQWADKINVLYCGQ 236
Cdd:cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKE-GKTILLSSHILEEAERLCDRVAILNNGR 172
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
4-232 |
1.39e-26 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 103.23 E-value: 1.39e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTieFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnWRVTADRMRFDDIDLLRLSARER 83
Cdd:cd03228 1 IEFKNVS--FSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL----YDPTSGEILIDGVDLRDLDLESL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 RKlvghNVSMIFQEPQscldpseRVGRQLMQNIpawtykgrwwqrfgwrkrraiellhrvgikdhkdamrsfpyeLTEGE 163
Cdd:cd03228 75 RK----NIAYVPQDPF-------LFSGTIRENI------------------------------------------LSGGQ 101
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1277489719 164 CQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQnsNTTILLISHDLQMLSQwADKINVL 232
Cdd:cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVIAHRLSTIRD-ADRIIVL 167
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
11-218 |
2.02e-26 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 104.03 E-value: 2.02e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 11 IEF----KTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDLLRLSARERRKL 86
Cdd:cd03292 1 IEFinvtKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP----TSGTIRVNGQDVSDLRGRAIPYL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 87 VGHnVSMIFQEpqSCLDPSERVGRQLMQNIPAWTYKGRWWQRfgwrkrRAIELLHRVGIKDHKdamRSFPYELTEGECQK 166
Cdd:cd03292 77 RRK-IGVVFQD--FRLLPDRNVYENVAFALEVTGVPPREIRK------RVPAALELVGLSHKH---RALPAELSGGEQQR 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1277489719 167 VMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQnSNTTILLISHD 218
Cdd:cd03292 145 VAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHA 195
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
21-246 |
1.94e-25 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 103.32 E-value: 1.94e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDLLRLSARERRKLVGHNVSMIFQEPQS 100
Cdd:PRK13646 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP----TTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 101 CLDpSERVGRQLMqnipawtykgrwwqrFGWR---------KRRAIELLHRVGIKdhKDAMRSFPYELTEGECQKVMIAI 171
Cdd:PRK13646 97 QLF-EDTVEREII---------------FGPKnfkmnldevKNYAHRLLMDLGFS--RDVMSQSPFQMSGGQMRKIAIVS 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1277489719 172 ALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKEL 246
Cdd:PRK13646 159 ILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
2-247 |
2.16e-25 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 106.04 E-value: 2.16e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEFKTGDEWV-KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV-----NKDNWRVTADRMrfdDIDL 75
Cdd:TIGR03269 278 PIIKVRNVSKRYISVDRGVvKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVleptsGEVNVRVGDEWV---DMTK 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 76 LRLSARERRKlvgHNVSMIFQEpqSCLDPSERVGRQLMQNI----PawtykgrwwqrFGWRKRRAIELLHRVGIKDHK-- 149
Cdd:TIGR03269 355 PGPDGRGRAK---RYIGILHQE--YDLYPHRTVLDNLTEAIglelP-----------DELARMKAVITLKMVGFDEEKae 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 150 DAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKI 229
Cdd:TIGR03269 419 EILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRA 498
|
250
....*....|....*...
gi 1277489719 230 NVLYCGQTVETAPSKELV 247
Cdd:TIGR03269 499 ALMRDGKIVKIGDPEEIV 516
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
4-240 |
2.29e-25 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 99.81 E-value: 2.29e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFktGDewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnwrVTAD--RMRFDDIDLLRLSAR 81
Cdd:cd03216 1 LELRGITKRF--GG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL------YKPDsgEILVDGKEVSFASPR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 82 ERRKLvGhnVSMIFQepqscldpservgrqlmqnipawtykgrwwqrfgwrkrraiellhrvgikdhkdamrsfpyeLTE 161
Cdd:cd03216 71 DARRA-G--IAMVYQ--------------------------------------------------------------LSV 85
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1277489719 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLnQNSNTTILLISHDLQMLSQWADKINVLYCGQTVET 240
Cdd:cd03216 86 GERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRL-RAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVGT 163
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
4-241 |
4.31e-25 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 100.29 E-value: 4.31e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTgdewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNkdnwRVTADRMRFDDIDLLRLSARER 83
Cdd:cd03259 1 LELKGLSKTYGS----VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE----RPDSGEILIDGRDVTGVPPERR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 rklvghNVSMIFQEPqsCLDPSERVGrqlmQNIpAWTYKGRWWQRfGWRKRRAIELLHRVGIKDHkdaMRSFPYELTEGE 163
Cdd:cd03259 73 ------NIGMVFQDY--ALFPHLTVA----ENI-AFGLKLRGVPK-AEIRARVRELLELVGLEGL---LNRYPHELSGGQ 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1277489719 164 CQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETA 241
Cdd:cd03259 136 QQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
2-221 |
4.71e-25 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 101.05 E-value: 4.71e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDLLRLSAR 81
Cdd:PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP----TSGDVIFNGQPMSKLSSA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 82 ERRKLVGHNVSMIFQEPQSCLDPSErvgrqlMQNIPAWTYKGRwwQRFGWRKRRAIELLHRVGIkDHKDAMRsfPYELTE 161
Cdd:PRK11629 80 AKAELRNQKLGFIYQFHHLLPDFTA------LENVAMPLLIGK--KKPAEINSRALEMLAAVGL-EHRANHR--PSELSG 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQM 221
Cdd:PRK11629 149 GERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL 208
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
1-256 |
4.95e-25 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 101.14 E-value: 4.95e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFktGDewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAIcgvNK-----DNWRVTADRMrFDDIDL 75
Cdd:PRK14247 1 MNKIEIRDLKVSF--GQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVF---NRlielyPEARVSGEVY-LDGQDI 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 76 LRLSARERRKlvghNVSMIFQEPQSCLDPS--ERVGRQLMQNIPAWTyKGRWWQRFGWRKRRAiELLHRVgiKDHKDAMR 153
Cdd:PRK14247 73 FKMDVIELRR----RVQMVFQIPNPIPNLSifENVALGLKLNRLVKS-KKELQERVRWALEKA-QLWDEV--KDRLDAPA 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 154 SfpyELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQnsNTTILLISHDLQMLSQWADKINVLY 233
Cdd:PRK14247 145 G---KLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--DMTIVLVTHFPQQAARISDYVAFLY 219
|
250 260
....*....|....*....|...
gi 1277489719 234 CGQTVETAPSKELVTMPHHPYTQ 256
Cdd:PRK14247 220 KGQIVEWGPTREVFTNPRHELTE 242
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
5-238 |
5.16e-25 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 100.02 E-value: 5.16e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 5 DIRNLTIEFKtgdEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDllrLSARERR 84
Cdd:cd03226 1 RIENISFSYK---KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE----SSGSILLNGKP---IKAKERR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 85 KlvghNVSMIFQEPQSCLDpSERVGRQLMQNIPAwTYKGrwwqrfgwrKRRAIELLHRVGIKDHKDAmrsFPYELTEGEC 164
Cdd:cd03226 71 K----SIGYVMQDVDYQLF-TDSVREELLLGLKE-LDAG---------NEQAETVLKDLDLYALKER---HPLSLSGGQK 132
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1277489719 165 QKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLnQNSNTTILLISHDLQMLSQWADKINVLYCGQTV 238
Cdd:cd03226 133 QRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL-AAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
1-220 |
1.12e-24 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 100.16 E-value: 1.12e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFktGDEWVkaVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGvnkDNWRVTADRMRFDDIDLLRLSA 80
Cdd:COG1119 1 DPLLELRNVTVRR--GGKTI--LDDISWTVKPGEHWAILGPNGAGKSTLLSLITG---DLPPTYGNDVRLFGERRGGEDV 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERRKLVGHnVSMIFQEPqscLDPSERV------------GRqlmqnipawtykgrwWQRFGWR-KRRAIELLHRVGIKD 147
Cdd:COG1119 74 WELRKRIGL-VSPALQLR---FPRDETVldvvlsgffdsiGL---------------YREPTDEqRERARELLELLGLAH 134
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1277489719 148 HKDamRSFPyELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQ 220
Cdd:COG1119 135 LAD--RPFG-TLSQGEQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVE 204
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
1-250 |
3.84e-24 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 101.46 E-value: 3.84e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFktGDewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnWRVTADRMRFDDIDLLRLSA 80
Cdd:PRK09536 1 MPMIDVSDLSVEF--GD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT----LTPTAGTVLVAGDDVEALSA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RErrklVGHNVSMIFQEPQSCLDPServGRQL--MQNIPAWTYKGRWwqrfGWRKRRAIE-LLHRVGIKDHKDamRSFPy 157
Cdd:PRK09536 73 RA----ASRRVASVPQDTSLSFEFD---VRQVveMGRTPHRSRFDTW----TETDRAAVErAMERTGVAQFAD--RPVT- 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLIsHDLQMLSQWADKINVLYCGQT 237
Cdd:PRK09536 139 SLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAI-HDLDLAARYCDELVLLADGRV 217
|
250
....*....|...
gi 1277489719 238 VETAPSKELVTMP 250
Cdd:PRK09536 218 RAAGPPADVLTAD 230
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
3-240 |
7.72e-24 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 101.40 E-value: 7.72e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 3 LLDIRNLTIEFKTgdewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNK----------DNwrvtaDRMRFDD 72
Cdd:NF040905 1 ILEMRGITKTFPG----VKALDDVNLSVREGEIHALCGENGAGKSTLMKVLSGVYPhgsyegeilfDG-----EVCRFKD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 73 IdllrlSARERRKLVghnvsMIFQE----PQscLDPSErvgrqlmqNIpawtYKGRWWQRFG---WRK--RRAIELLHRV 143
Cdd:NF040905 72 I-----RDSEALGIV-----IIHQElaliPY--LSIAE--------NI----FLGNERAKRGvidWNEtnRRARELLAKV 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 144 GIKDHKDAMRSfpyELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTIlLISHDLQMLS 223
Cdd:NF040905 128 GLDESPDTLVT---DIGVGKQQLVEIAKALSKDVKLLILDEPTAALNEEDSAALLDLLLELKAQGITSI-IISHKLNEIR 203
|
250
....*....|....*..
gi 1277489719 224 QWADKINVLYCGQTVET 240
Cdd:NF040905 204 RVADSITVLRDGRTIET 220
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
2-246 |
1.17e-23 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 100.87 E-value: 1.17e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIefkTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnWRVTADRMRFDDIDLLRLSAR 81
Cdd:COG3845 256 VVLEVENLSV---RDDRGVPALKDVSLEVRAGEILGIAGVAGNGQSELAEALAGL----RPPASGSIRLDGEDITGLSPR 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 82 ERRKL-VGHnvsmIfqepqscldPSERVGR------QLMQNIPAWTYKGRWWQRFGWRKRRAI-----ELLHRVGIK--D 147
Cdd:COG3845 329 ERRRLgVAY----I---------PEDRLGRglvpdmSVAENLILGRYRRPPFSRGGFLDRKAIrafaeELIEEFDVRtpG 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 148 HKDAMRSfpyeLTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLnQNSNTTILLISHDLQMLSQWAD 227
Cdd:COG3845 396 PDTPARS----LSGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLEL-RDAGAAVLLISEDLDEILALSD 470
|
250
....*....|....*....
gi 1277489719 228 KINVLYCGQTVETAPSKEL 246
Cdd:COG3845 471 RIAVMYEGRIVGEVPAAEA 489
|
|
| oligo_HPY |
TIGR01727 |
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model ... |
236-323 |
2.43e-23 |
|
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model represents a domain found in the C-terminal regions of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 213647 [Multi-domain] Cd Length: 87 Bit Score: 92.04 E-value: 2.43e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 236 QTVETAPSKELVTMPHHPYTQALIRAIPDFGSAmphKSRLNTLPGAIPLLEQLPIGCRLGPRCPYAQREC-IVTPRLT-G 313
Cdd:TIGR01727 1 KIVETGPAEEIFKNPLHPYTKALLSAIPTIKKR---DRKLISIPGEVPSLINLPSGCRFYPRCPYAQDECrKEPPALVeI 77
|
90
....*....|
gi 1277489719 314 AKNHLYACHF 323
Cdd:TIGR01727 78 AEGHRVACHL 87
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
4-241 |
5.56e-23 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 94.59 E-value: 5.56e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTGdewvKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKdnwrVTADRMRFDDIDLLRLSARER 83
Cdd:cd03268 1 LKTNDLTKTYGKK----RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK----PDSGEITFDGKSYQKNIEALR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 RklVGhnvSMIfqEPQSCLDpsERVGRQLMQnipawtYKGRWwqrFGWRKRRAIELLHRVGIKDH-KDAMRSFpyelTEG 162
Cdd:cd03268 73 R--IG---ALI--EAPGFYP--NLTARENLR------LLARL---LGIRKKRIDEVLDVVGLKDSaKKKVKGF----SLG 130
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1277489719 163 ECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNqNSNTTILLISHDLQMLSQWADKINVLYCGQTVETA 241
Cdd:cd03268 131 MKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLR-DQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
1-245 |
5.95e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 96.27 E-value: 5.95e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLlDIRNLTIEFKTGDEW-VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDLL--R 77
Cdd:PRK13637 1 MSI-KIENLTHIYMEGTPFeKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP----TSGKIIIDGVDITdkK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 78 LSARERRKLVGhnvsMIFQEPQscldpservgRQLMQNIpawTYKGrwwQRFGWR---------KRRAIELLHRVGIK-- 146
Cdd:PRK13637 76 VKLSDIRKKVG----LVFQYPE----------YQLFEET---IEKD---IAFGPInlglseeeiENRVKRAMNIVGLDye 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 147 DHKDamRSfPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWA 226
Cdd:PRK13637 136 DYKD--KS-PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLA 212
|
250
....*....|....*....
gi 1277489719 227 DKINVLYCGQTVETAPSKE 245
Cdd:PRK13637 213 DRIIVMNKGKCELQGTPRE 231
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
4-236 |
6.35e-23 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 93.41 E-value: 6.35e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTgdewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNkdnwRVTADRMRFDDIDLLRLSA--R 81
Cdd:cd03229 1 LELKNVSKRYGQ----KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE----EPDSGSILIDGEDLTDLEDelP 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 82 ERRKLVGhnvsMIFQEPQscldpservgrqLMQnipawtykgrwwqrfgwrkrraiellhrvgikdHKDAMRSFPYELTE 161
Cdd:cd03229 73 PLRRRIG----MVFQDFA------------LFP---------------------------------HLTVLENIALGLSG 103
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1277489719 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQ 236
Cdd:cd03229 104 GQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-248 |
6.49e-23 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 98.85 E-value: 6.49e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFKTgdewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKdnWRVTADRMRFDDIDLLRLSA 80
Cdd:PRK13549 3 EYLLEMKNITKTFGG----VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP--HGTYEGEIIFEGEELQASNI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERRKLvghNVSMIFQEpqSCLDPSERVGrqlmQNIpawtYKGRWWQRFG---WRK--RRAIELLHRVGIkDHKDAMRSf 155
Cdd:PRK13549 77 RDTERA---GIAIIHQE--LALVKELSVL----ENI----FLGNEITPGGimdYDAmyLRAQKLLAQLKL-DINPATPV- 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 156 pYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLnQNSNTTILLISHDLQMLSQWADKINVLYCG 235
Cdd:PRK13549 142 -GNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDL-KAHGIACIYISHKLNEVKAISDTICVIRDG 219
|
250
....*....|...
gi 1277489719 236 QTVETAPSKELVT 248
Cdd:PRK13549 220 RHIGTRPAAGMTE 232
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
21-224 |
6.09e-22 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 92.25 E-value: 6.09e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNkdnwRVTADRMRFDDIDLLRLSARE----RRKlvghnVSMIFQ 96
Cdd:PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE----RPSAGKIWFSGHDITRLKNREvpflRRQ-----IGMIFQ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 97 EPQSCLDpservgRQLMQNIP-AWTYKGRWWQRFgwrKRRAIELLHRVGIKDHKdamRSFPYELTEGECQKVMIAIALAN 175
Cdd:PRK10908 87 DHHLLMD------RTVYDNVAiPLIIAGASGDDI---RRRVSAALDKVGLLDKA---KNFPIQLSGGEQQRVGIARAVVN 154
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1277489719 176 QPRLLIADEPTNSMEPTTQAQIFRLLTRLNQnSNTTILLISHDLQMLSQ 224
Cdd:PRK10908 155 KPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDIGLISR 202
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
2-246 |
1.42e-21 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 92.39 E-value: 1.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEFKTGDEWvkAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnWRVTADRMRFDDIDLLRLSAR 81
Cdd:PRK13635 4 EIIRVEHISFRYPDAATY--ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL----LLPEAGTITVGGMVLSEETVW 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 82 ERRKLVGhnvsMIFQEPQscldpSERVGRQLMQNIPawtykgrwwqrFGWRKR---------RAIELLHRVGikdhkdaM 152
Cdd:PRK13635 78 DVRRQVG----MVFQNPD-----NQFVGATVQDDVA-----------FGLENIgvpreemveRVDQALRQVG-------M 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 153 RSF----PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQwADK 228
Cdd:PRK13635 131 EDFlnrePHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADR 209
|
250
....*....|....*...
gi 1277489719 229 INVLYCGQTVETAPSKEL 246
Cdd:PRK13635 210 VIVMNKGEILEEGTPEEI 227
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
4-246 |
2.29e-21 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 90.51 E-value: 2.29e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFktGDewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnWRVTADRMRFDDIDLLRLSARER 83
Cdd:cd03265 1 IEVENLVKKY--GD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL----LKPTSGRATVAGHDVVREPREVR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 RklvghNVSMIFQEPQscLDPsERVGRQLMQnIPAWTYkGRWWQRfgwRKRRAIELLHRVGIKDHKDAM-RSFpyelTEG 162
Cdd:cd03265 73 R-----RIGIVFQDLS--VDD-ELTGWENLY-IHARLY-GVPGAE---RRERIDELLDFVGLLEAADRLvKTY----SGG 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 163 ECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAP 242
Cdd:cd03265 136 MRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGT 215
|
....
gi 1277489719 243 SKEL 246
Cdd:cd03265 216 PEEL 219
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
31-238 |
2.43e-21 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 90.43 E-value: 2.43e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 31 TEGEIRGLVGESGSGKSLIAKAICGVNKdnwrVTADRMRFDDIDL------LRLSARERRklvghnVSMIFQEPQscLDP 104
Cdd:cd03297 21 LNEEVTGIFGASGAGKSTLLRCIAGLEK----PDGGTIVLNGTVLfdsrkkINLPPQQRK------IGLVFQQYA--LFP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 105 SERVgrqlMQNIpAWTYKGRwwqRFGWRKRRAIELLHRVGIkDHkdAMRSFPYELTEGECQKVMIAIALANQPRLLIADE 184
Cdd:cd03297 89 HLNV----RENL-AFGLKRK---RNREDRISVDELLDLLGL-DH--LLNRYPAQLSGGEKQRVALARALAAQPELLLLDE 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1277489719 185 PTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTV 238
Cdd:cd03297 158 PFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
21-259 |
3.51e-21 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 90.88 E-value: 3.51e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 21 KAVDR-VSMTLTEGEIRGLVGESGSGKSLIAKAI---CGVNKDNWRVTADRMRFDDiDLLRLSARERRKLVGhnvsMIFQ 96
Cdd:PRK14246 23 KAILKdITIKIPNNSIFGIMGPSGSGKSTLLKVLnrlIEIYDSKIKVDGKVLYFGK-DIFQIDAIKLRKEVG----MVFQ 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 97 EPqsclDPSERVgrQLMQNIpAWTYKGRwwqrfGWRKRRAI-----ELLHRVGI-KDHKDAMRSFPYELTEGECQKVMIA 170
Cdd:PRK14246 98 QP----NPFPHL--SIYDNI-AYPLKSH-----GIKEKREIkkiveECLRKVGLwKEVYDRLNSPASQLSGGQQQRLTIA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 171 IALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQnsNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTMP 250
Cdd:PRK14246 166 RALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSP 243
|
....*....
gi 1277489719 251 HHPYTQALI 259
Cdd:PRK14246 244 KNELTEKYV 252
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
4-246 |
3.97e-21 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 89.87 E-value: 3.97e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTGDewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGvnkdnwRVTADRmrfDDIDLLRLSARER 83
Cdd:cd03263 1 LQIRNLTKTYKKGT--KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTG------ELRPTS---GTAYINGYSIRTD 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 RKLVGHNVSMIfqePQSCLDPSERVGRQLMQnipawtYKGRWWQRFGWRKRRAIELLHR-VGIKDHKDAMRSfpyELTEG 162
Cdd:cd03263 70 RKAARQSLGYC---PQFDALFDELTVREHLR------FYARLKGLPKSEIKEEVELLLRvLGLTDKANKRAR---TLSGG 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 163 ECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSntTILLISHDLQMLSQWADKINVLYCGQTVETAP 242
Cdd:cd03263 138 MKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGR--SIILTTHSMDEAEALCDRIAIMSDGKLRCIGS 215
|
....
gi 1277489719 243 SKEL 246
Cdd:cd03263 216 PQEL 219
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
4-238 |
4.69e-21 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 90.95 E-value: 4.69e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTGDewvKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKdnwrVTADRMRFDDIDLLRLSARER 83
Cdd:PRK13647 5 IEVEDLHFRYKDGT---KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL----PQRGRVKVMGREVNAENEKWV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 RKLVGhnvsMIFQepqsclDPSERVgrqlmqnipawtYKGRWWQ--RFGWR---------KRRAIELLHRVGIKDHKDAM 152
Cdd:PRK13647 78 RSKVG----LVFQ------DPDDQV------------FSSTVWDdvAFGPVnmgldkdevERRVEEALKAVRMWDFRDKP 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 153 rsfPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSnTTILLISHDLQMLSQWADKINVL 232
Cdd:PRK13647 136 ---PYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG-KTVIVATHDVDLAAEWADQVIVL 211
|
....*.
gi 1277489719 233 YCGQTV 238
Cdd:PRK13647 212 KEGRVL 217
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
2-236 |
5.13e-21 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 88.64 E-value: 5.13e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEfktgdewvKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnWRVTADRMRFDDIDLLRLSAR 81
Cdd:cd03215 3 PVLEVRGLSVK--------GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL----RPPASGEITLDGKPVTRRSPR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 82 ERRKlvgHNVSMIfqepqscldPSERVGRQLMQNIPawtykgrwwqrfgwrkrraiellhrvgIKDHkdamRSFPYELTE 161
Cdd:cd03215 71 DAIR---AGIAYV---------PEDRKREGLVLDLS---------------------------VAEN----IALSSLLSG 107
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1277489719 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNsNTTILLISHDLQMLSQWADKINVLYCGQ 236
Cdd:cd03215 108 GNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA-GKAVLLISSELDELLGLCDRILVMYEGR 181
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
4-229 |
1.03e-20 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 88.36 E-value: 1.03e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFktGDEWVkaVDRVSMTLTEGEIRGLVGESGSGKSLIAKAIcgvnkdNW--RVTADRMRFDDIDLL---RL 78
Cdd:cd03262 1 IEIKNLHKSF--GDFHV--LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCI------NLleEPDSGTIIIDGLKLTddkKN 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 79 SARERRKlvghnVSMIFQepQSCLDPSERVgrqlMQNIpawTYKGRWwqRFGWRK----RRAIELLHRVGIKDHKDAmrs 154
Cdd:cd03262 71 INELRQK-----VGMVFQ--QFNLFPHLTV----LENI---TLAPIK--VKGMSKaeaeERALELLEKVGLADKADA--- 131
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1277489719 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQnSNTTILLISHDLQMLSQWADKI 229
Cdd:cd03262 132 YPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEMGFAREVADRV 205
|
|
| oligo_HPY |
pfam08352 |
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found ... |
238-305 |
1.24e-20 |
|
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found towards the C-terminus of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid.
Pssm-ID: 400588 [Multi-domain] Cd Length: 65 Bit Score: 83.99 E-value: 1.24e-20
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1277489719 238 VETAPSKELVTMPHHPYTQALIRAIPDFGsamPHKSRLNTLPGAIPLLEQLPIGCRLGPRCPYAQREC 305
Cdd:pfam08352 1 VEEGPTDDILENPLHPYTRALLNSVPRLD---PPKRPLYTIPGNVPSLLELPEGCPFAPRCPFATEEC 65
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
1-261 |
2.58e-20 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 88.56 E-value: 2.58e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFKTGdewvKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADrmrfDDIDLLRLSA 80
Cdd:PRK14258 5 IPAIKVNNLSFYYDTQ----KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVE----GRVEFFNQNI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERR---KLVGHNVSMIFQEPQscLDPservgRQLMQNIpAWTYKgrwwqRFGWRKR-----------RAIELLHRVGIK 146
Cdd:PRK14258 77 YERRvnlNRLRRQVSMVHPKPN--LFP-----MSVYDNV-AYGVK-----IVGWRPKleiddivesalKDADLWDEIKHK 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 147 DHKDAMrsfpyELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWA 226
Cdd:PRK14258 144 IHKSAL-----DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLS 218
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1277489719 227 D-----KINVLYCGQTVETAPSKELVTMPHHPYTQALIRA 261
Cdd:PRK14258 219 DftaffKGNENRIGQLVEFGLTKKIFNSPHDSRTREYVLS 258
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
4-247 |
2.68e-20 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 91.40 E-value: 2.68e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTgdewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNK------------------------- 58
Cdd:TIGR03269 1 IEVKNLTKKFDG----KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQyeptsgriiyhvalcekcgyverps 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 59 ---DNWRVTADRMRFDDIDLLRLSARERRKLVGHNVSMiFQEPQScLDPSERVGRQLMQNIPAWTYKGRWwqrfgwRKRR 135
Cdd:TIGR03269 77 kvgEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIM-LQRTFA-LYGDDTVLDNVLEALEEIGYEGKE------AVGR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 136 AIELLHRVGIkDHKdaMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLI 215
Cdd:TIGR03269 149 AVDLIEMVQL-SHR--ITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT 225
|
250 260 270
....*....|....*....|....*....|..
gi 1277489719 216 SHDLQMLSQWADKINVLYCGQTVETAPSKELV 247
Cdd:TIGR03269 226 SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVV 257
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
22-262 |
2.84e-20 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 90.48 E-value: 2.84e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDLLRLSARERRKLVGHNVSMIFQE---- 97
Cdd:PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP----TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSfalm 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 98 PQSCLDPSERVGRQLmQNIPAWTykgrwwqrfgwRKRRAIELLHRVGIKDHKdamRSFPYELTEGECQKVMIAIALANQP 177
Cdd:PRK10070 119 PHMTVLDNTAFGMEL-AGINAEE-----------RREKALDALRQVGLENYA---HSYPDELSGGMRQRVGLARALAINP 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 178 RLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTMPHHPYTQA 257
Cdd:PRK10070 184 DILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRT 263
|
....*
gi 1277489719 258 LIRAI 262
Cdd:PRK10070 264 FFRGV 268
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
2-245 |
5.25e-20 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 90.55 E-value: 5.25e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDN---WRVTADRMRFDDIDLLrl 78
Cdd:PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTsgtYRVAGQDVATLDADAL-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 79 sARERRKLVGhnvsMIFQEPQ--SCLDPSERVgrqlmqNIPAwTYKGRWWQRfgwRKRRAIELLHRVGIKDHKDAMrsfP 156
Cdd:PRK10535 81 -AQLRREHFG----FIFQRYHllSHLTAAQNV------EVPA-VYAGLERKQ---RLLRAQELLQRLGLEDRVEYQ---P 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 157 YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTIlLISHDLQMLSQwADKINVLYCGQ 236
Cdd:PRK10535 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVI-IVTHDPQVAAQ-AERVIEIRDGE 220
|
....*....
gi 1277489719 237 TVETAPSKE 245
Cdd:PRK10535 221 IVRNPPAQE 229
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
4-250 |
7.37e-20 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 86.52 E-value: 7.37e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTGdewvKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKdnwrVTADRMRFDDIDLLRLSARER 83
Cdd:cd03300 1 IELENVSKFYGGF----VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET----PTSGEILLDGKDITNLPPHKR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 rklvghNVSMIFQepQSCLDPSERVGrqlmQNIPawtykgrwwqrFGWR---------KRRAIELLHRVGIKDHKDAMrs 154
Cdd:cd03300 73 ------PVNTVFQ--NYALFPHLTVF----ENIA-----------FGLRlkklpkaeiKERVAEALDLVQLEGYANRK-- 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 155 fPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYC 234
Cdd:cd03300 128 -PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNK 206
|
250
....*....|....*.
gi 1277489719 235 GQTVETAPSKELVTMP 250
Cdd:cd03300 207 GKIQQIGTPEEIYEEP 222
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
1-221 |
8.00e-20 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 86.37 E-value: 8.00e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MP---LLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDLLR 77
Cdd:PRK10584 1 MPaenIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG----SSGEVSLVGQPLHQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 78 LSARERRKLVGHNVSMIFQE----PQscLDPSERVgrQLmqniPAwTYKGrwwQRFGWRKRRAIELLHRVGIKDHKDAMr 153
Cdd:PRK10584 77 MDEEARAKLRAKHVGFVFQSfmliPT--LNALENV--EL----PA-LLRG---ESSRQSRNGAKALLEQLGLGKRLDHL- 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1277489719 154 sfPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQM 221
Cdd:PRK10584 144 --PAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQL 209
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
11-246 |
8.93e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 87.11 E-value: 8.93e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 11 IEFK------TGDEWVkAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKdnwrVTADRMRFDDIDLLRLSARERR 84
Cdd:PRK13648 8 IVFKnvsfqyQSDASF-TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK----VKSGEIFYNNQAITDDNFEKLR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 85 KLVGhnvsMIFQEPQScldpservgrQLMQNIPAWTYKgrwwqrFGWR---------KRRAIELLHRVGIKDHKDamrSF 155
Cdd:PRK13648 83 KHIG----IVFQNPDN----------QFVGSIVKYDVA------FGLEnhavpydemHRRVSEALKQVDMLERAD---YE 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQwADKINVLYCG 235
Cdd:PRK13648 140 PNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKG 218
|
250
....*....|.
gi 1277489719 236 QTVETAPSKEL 246
Cdd:PRK13648 219 TVYKEGTPTEI 229
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
3-272 |
1.23e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 87.07 E-value: 1.23e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 3 LLDIRNLTIEFKTGDEwVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTadrmrfdDIDLLRLSARE 82
Cdd:PRK13642 4 ILEVENLVFKYEKESD-VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV-------KIDGELLTAEN 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 83 ----RRKlvghnVSMIFQEPQScldpsERVGRQLMQNIpAWTYKGRWWQRFGWRKRrAIELLHRVGIKDHKDAMrsfPYE 158
Cdd:PRK13642 76 vwnlRRK-----IGMVFQNPDN-----QFVGATVEDDV-AFGMENQGIPREEMIKR-VDEALLAVNMLDFKTRE---PAR 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQwADKINVLYCGQTV 238
Cdd:PRK13642 141 LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEII 219
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1277489719 239 -ETAPSKELVTMPHH-------PYTQALIRAIPDFGSAMPHK 272
Cdd:PRK13642 220 kEAAPSELFATSEDMveigldvPFSSNLMKDLRKNGFDLPEK 261
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
21-236 |
1.31e-19 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 86.61 E-value: 1.31e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnwrVTADRMRFDDIDLL--------RLsARERRKLVGHNvS 92
Cdd:PRK09984 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL------ITGDKSAGSHIELLgrtvqregRL-ARDIRKSRANT-G 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 93 MIFQEPQ--SCLDPSERVGRQLMQNIPAWTYKGRWWQRFgwRKRRAIELLHRVGikdhkdaMRSFPYE----LTEGECQK 166
Cdd:PRK09984 90 YIFQQFNlvNRLSVLENVLIGALGSTPFWRTCFSWFTRE--QKQRALQALTRVG-------MVHFAHQrvstLSGGQQQR 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 167 VMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQ 236
Cdd:PRK09984 161 VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
4-246 |
2.03e-19 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 85.18 E-value: 2.03e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTiefkTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnWRVTADRMRFDDIDLLRLSARER 83
Cdd:cd03224 1 LEVENLN----AGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL----LPPRSGSIRFDGRDITGLPPHER 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 rklVGHNVSMIfqePQscldpservGRQL------MQNI--PAWTYKGRwwqRFGWRKRRAIELLHRVgikdhKDAMRSF 155
Cdd:cd03224 73 ---ARAGIGYV---PE---------GRRIfpeltvEENLllGAYARRRA---KRKARLERVYELFPRL-----KERRKQL 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQnSNTTILLISHDLQMLSQWADKINVLYCG 235
Cdd:cd03224 130 AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNARFALEIADRAYVLERG 208
|
250
....*....|.
gi 1277489719 236 QTVETAPSKEL 246
Cdd:cd03224 209 RVVLEGTAAEL 219
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
21-246 |
2.06e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 86.34 E-value: 2.06e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDLLRLSARERRKLVGHNVSMIFQEPQS 100
Cdd:PRK13649 21 RALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP----TQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 101 CLDpSERVgrqlMQNI---PawtykgrwwQRFGWRK----RRAIELLHRVGIKDhkDAMRSFPYELTEGECQKVMIAIAL 173
Cdd:PRK13649 97 QLF-EETV----LKDVafgP---------QNFGVSQeeaeALAREKLALVGISE--SLFEKNPFELSGGQMRRVAIAGIL 160
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1277489719 174 ANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQnSNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKEL 246
Cdd:PRK13649 161 AMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDI 232
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
2-248 |
2.96e-19 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 85.59 E-value: 2.96e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTieFKTGDEWVkaVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGvnkdNWRVTADRMRFDDIDLLRLSAR 81
Cdd:PRK13548 1 AMLEARNLS--VRLGGRTL--LDDVSLTLRPGEVVAILGPNGAGKSTLLRALSG----ELSPDSGEVRLNGRPLADWSPA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 82 E---RRKLVGHNVSMIFqepqscldP---SERVGrqlMQNIPawtykgrwWQRFGWRKRRAI-ELLHRVGIKDHKDamRS 154
Cdd:PRK13548 73 ElarRRAVLPQHSSLSF--------PftvEEVVA---MGRAP--------HGLSRAEDDALVaAALAQVDLAHLAG--RD 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 155 FPyELTEGECQKVMIAIALA------NQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADK 228
Cdd:PRK13548 132 YP-QLSGGEQQRVQLARVLAqlwepdGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADR 210
|
250 260
....*....|....*....|
gi 1277489719 229 INVLYCGQTVETAPSKELVT 248
Cdd:PRK13548 211 IVLLHQGRLVADGTPAEVLT 230
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
1-256 |
3.37e-19 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 85.19 E-value: 3.37e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFKtGDEWVKAVDrvsMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDL---LR 77
Cdd:PRK11264 1 MSAIEVKNLVKKFH-GQTVLHGID---LEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP----EAGTIRVGDITIdtaRS 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 78 LSARER--RKLVGHnVSMIFQEPQscLDPServgRQLMQNI---PAWTYKgrwwQRFGWRKRRAIELLHRVGIKDHKDAm 152
Cdd:PRK11264 73 LSQQKGliRQLRQH-VGFVFQNFN--LFPH----RTVLENIiegPVIVKG----EPKEEATARARELLAKVGLAGKETS- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 153 rsFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQnSNTTILLISHDLQMLSQWADKINVL 232
Cdd:PRK11264 141 --YPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEMSFARDVADRAIFM 217
|
250 260
....*....|....*....|....
gi 1277489719 233 YCGQTVETAPSKELVTMPHHPYTQ 256
Cdd:PRK11264 218 DQGRIVEQGPAKALFADPQQPRTR 241
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-255 |
5.56e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 85.15 E-value: 5.56e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEFKTGdewvKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNK--DNWRVTAD-----RMRFDDID 74
Cdd:PRK14271 20 PAMAAVNLTLGFAGK----TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDkvSGYRYSGDvllggRSIFNYRD 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 75 LLRLSARerrklvghnVSMIFQEPQScldpserVGRQLMQNIPAWTYKGRWWQRFGWRKRrAIELLHRVGIKDH-KDAMR 153
Cdd:PRK14271 96 VLEFRRR---------VGMLFQRPNP-------FPMSIMDNVLAGVRAHKLVPRKEFRGV-AQARLTEVGLWDAvKDRLS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 154 SFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLnqNSNTTILLISHDLQMLSQWADKINVLY 233
Cdd:PRK14271 159 DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL--ADRLTVIIVTHNLAQAARISDRAALFF 236
|
250 260
....*....|....*....|..
gi 1277489719 234 CGQTVETAPSKELVTMPHHPYT 255
Cdd:PRK14271 237 DGRLVEEGPTEQLFSSPKHAET 258
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
2-236 |
6.08e-19 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 87.41 E-value: 6.08e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIE-FKtgdewvkavdRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKdnwrVTADRMRFDDIDLLRLSA 80
Cdd:PRK15439 267 PVLTVEDLTGEgFR----------NISLEVRAGEILGLAGVVGAGRTELAETLYGLRP----ARGGRIMLNGKEINALST 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RER--RKLV----GHNVSMIFqepqscLDPServgrqLMQNIPAWTYKGR-WWQRFGwRKRRAIELLHR-VGIK-DHKD- 150
Cdd:PRK15439 333 AQRlaRGLVylpeDRQSSGLY------LDAP------LAWNVCALTHNRRgFWIKPA-RENAVLERYRRaLNIKfNHAEq 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 151 AMRSfpyeLTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNsNTTILLISHDLQMLSQWADKIN 230
Cdd:PRK15439 400 AART----LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVL 474
|
....*.
gi 1277489719 231 VLYCGQ 236
Cdd:PRK15439 475 VMHQGE 480
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
4-239 |
6.90e-19 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 83.92 E-value: 6.90e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTI---EFKtgdewvkaVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNwrvtADRMRFDDIDLLRLSA 80
Cdd:cd03299 1 LKVENLSKdwkEFK--------LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD----SGKILLNGKDITNLPP 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERrklvghNVSMIFQEpqSCLDPSERVGRqlmqNIpAWTYKGRWWQRFGwRKRRAIELLHRVGIkDHkdAMRSFPYELT 160
Cdd:cd03299 69 EKR------DISYVPQN--YALFPHMTVYK----NI-AYGLKKRKVDKKE-IERKVLEIAEMLGI-DH--LLNRKPETLS 131
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1277489719 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVE 239
Cdd:cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-245 |
8.98e-19 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 86.62 E-value: 8.98e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFktGDewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnwrVTAD--RMRFDDIDLLRL 78
Cdd:COG3845 3 PPALELRGITKRF--GG--VVANDDVSLTVRPGEIHALLGENGAGKSTLMKILYGL------YQPDsgEILIDGKPVRIR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 79 SARERRKLvghNVSMIFQEPQscLDPSERVgrqlMQNIpAWTYKGRWWQRFGWRK--RRAIELLHRVGIKDHKDAMrsfP 156
Cdd:COG3845 73 SPRDAIAL---GIGMVHQHFM--LVPNLTV----AENI-VLGLEPTKGGRLDRKAarARIRELSERYGLDVDPDAK---V 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 157 YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLnQNSNTTILLISHDLQMLSQWADKINVLYCGQ 236
Cdd:COG3845 140 EDLSVGEQQRVEILKALYRGARILILDEPTAVLTPQEADELFEILRRL-AAEGKSIIFITHKLREVMAIADRVTVLRRGK 218
|
....*....
gi 1277489719 237 TVETAPSKE 245
Cdd:COG3845 219 VVGTVDTAE 227
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
4-236 |
1.58e-18 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 82.69 E-value: 1.58e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTgdewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKdnwrVTADRMRFDDIDLLRLSARER 83
Cdd:cd03301 1 VELENVTKRFGN----VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE----PTSGRIYIGGRDVTDLPPKDR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 rklvghNVSMIFQepQSCLDPSERVgrqlMQNIpAWTYKGRWWQRFGWRKR--RAIELLHRVGIKDHKdamrsfPYELTE 161
Cdd:cd03301 73 ------DIAMVFQ--NYALYPHMTV----YDNI-AFGLKLRKVPKDEIDERvrEVAELLQIEHLLDRK------PKQLSG 133
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1277489719 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQ 236
Cdd:cd03301 134 GQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQ 208
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
26-254 |
1.70e-18 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 84.78 E-value: 1.70e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 26 VSMTLTEGEIRGLVGESGSGKSLIAKAICGVNK-DNWR-VTADRMRFDDIDLLRLSARERRklvghnVSMIFQEPQscLD 103
Cdd:TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRpDEGEiVLNGRTLFDSRKGIFLPPEKRR------IGYVFQEAR--LF 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 104 PSERVGRQLMqnipawtYkGRWWQRFGWRKRRAIELLHRVGIkDHkdAMRSFPYELTEGECQKVMIAIALANQPRLLIAD 183
Cdd:TIGR02142 88 PHLSVRGNLR-------Y-GMKRARPSERRISFERVIELLGI-GH--LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMD 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1277489719 184 EPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTMPHHPY 254
Cdd:TIGR02142 157 EPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
11-250 |
2.12e-18 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 82.83 E-value: 2.12e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 11 IEFKT-----GDEWVkaVDRVSMTLTEGEIRGLVGESGSGKSLIAKAIcgvNKDNwRVTADRMRFDDIDLLRLSARERrk 85
Cdd:PRK09493 2 IEFKNvskhfGPTQV--LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCI---NKLE-EITSGDLIVDGLKVNDPKVDER-- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 86 LVGHNVSMIFQepQSCLDPservgrQL--MQNIpawtykgrwwqRFGWRKRR----------AIELLHRVGIKDHkdaMR 153
Cdd:PRK09493 74 LIRQEAGMVFQ--QFYLFP------HLtaLENV-----------MFGPLRVRgaskeeaekqARELLAKVGLAER---AH 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 154 SFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLnQNSNTTILLISHDLQMLSQWADKINVLY 233
Cdd:PRK09493 132 HYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDL-AEEGMTMVIVTHEIGFAEKVASRLIFID 210
|
250
....*....|....*..
gi 1277489719 234 CGQTVETAPSKELVTMP 250
Cdd:PRK09493 211 KGRIAEDGDPQVLIKNP 227
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
2-259 |
2.23e-18 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 82.90 E-value: 2.23e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEFKTGdewvKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVT---ADRMRFDDIDLLRL 78
Cdd:PRK14239 4 PILQVSDLSVYYNKK----KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTitgSIVYNGHNIYSPRT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 79 SARERRKLVGhnvsMIFQEPqsclDPservgrqlmqnIPAWTYKGrwwQRFGWR----KRRAI------ELLHRVGIKDH 148
Cdd:PRK14239 80 DTVDLRKEIG----MVFQQP----NP-----------FPMSIYEN---VVYGLRlkgiKDKQVldeaveKSLKGASIWDE 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 149 -KDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQnsNTTILLISHDLQMLSQWAD 227
Cdd:PRK14239 138 vKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSMQQASRISD 215
|
250 260 270
....*....|....*....|....*....|..
gi 1277489719 228 KINVLYCGQTVETAPSKELVTMPHHPYTQALI 259
Cdd:PRK14239 216 RTGFFLDGDLIEYNDTKQMFMNPKHKETEDYI 247
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
21-248 |
2.77e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 83.34 E-value: 2.77e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDLLRLSARERRKLVGHNVSMIFQEPQS 100
Cdd:PRK13641 21 KGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP----SSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 101 cldpservgrQLMQNI--------PawtykgrwwQRFGWR----KRRAIELLHRVGIKDhkDAMRSFPYELTEGECQKVM 168
Cdd:PRK13641 97 ----------QLFENTvlkdvefgP---------KNFGFSedeaKEKALKWLKKVGLSE--DLISKSPFELSGGQMRRVA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 169 IAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLnQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVT 248
Cdd:PRK13641 156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDY-QKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
2-248 |
5.08e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 82.35 E-value: 5.08e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTieFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDLLRLSAR 81
Cdd:PRK13632 6 VMIKVENVS--FSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP----QSGEIKIDGITISKENLK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 82 ERRKLVGhnvsMIFQEPQS------------------CLDPSErvgrqlMQNIPAwtykgrwwqrfgwrkrraiELLHRV 143
Cdd:PRK13632 80 EIRKKIG----IIFQNPDNqfigatveddiafglenkKVPPKK------MKDIID-------------------DLAKKV 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 144 GIKDHKDamRSfPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLS 223
Cdd:PRK13632 131 GMEDYLD--KE-PQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI 207
|
250 260
....*....|....*....|....*
gi 1277489719 224 QwADKINVLYCGQTVETAPSKELVT 248
Cdd:PRK13632 208 L-ADKVIVFSEGKLIAQGKPKEILN 231
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
6-254 |
7.12e-18 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 81.23 E-value: 7.12e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 6 IRNLTIEFktGDewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNkdnwRVTADRMRFDDIDLLRLSARERrk 85
Cdd:cd03296 5 VRNVSKRF--GD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE----RPDSGTILFGGEDATDVPVQER-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 86 lvghNVSMIFQepQSCLDPSERVgrqlMQNIPawtykgrwwqrFGWR-------------KRRAIELLHRVGIKDHKDam 152
Cdd:cd03296 75 ----NVGFVFQ--HYALFRHMTV----FDNVA-----------FGLRvkprserppeaeiRAKVHELLKLVQLDWLAD-- 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 153 rSFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVL 232
Cdd:cd03296 132 -RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVM 210
|
250 260
....*....|....*....|..
gi 1277489719 233 YCGQTVETAPSKELVTMPHHPY 254
Cdd:cd03296 211 NKGRIEQVGTPDEVYDHPASPF 232
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
11-270 |
1.04e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 81.77 E-value: 1.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 11 IEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV----NKDNWRVTADRMRFDDIDLLRLsaRERrkl 86
Cdd:PRK13640 11 VSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLllpdDNPNSKITVDGITLTAKTVWDI--REK--- 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 87 vghnVSMIFQEPQscldpSERVGRQLMQNIpAWTYKGRWWQRfgwRKRRAI--ELLHRVGIKDHKDamrSFPYELTEGEC 164
Cdd:PRK13640 86 ----VGIVFQNPD-----NQFVGATVGDDV-AFGLENRAVPR---PEMIKIvrDVLADVGMLDYID---SEPANLSGGQK 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 165 QKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQwADKINVLYCGQTVETAPSK 244
Cdd:PRK13640 150 QRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANM-ADQVLVLDDGKLLAQGSPV 228
|
250 260 270
....*....|....*....|....*....|....
gi 1277489719 245 EL---VTMPHH-----PYTQALIRAIPDFGSAMP 270
Cdd:PRK13640 229 EIfskVEMLKEigldiPFVYKLKNKLKEKGISVP 262
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
4-259 |
1.23e-17 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 80.57 E-value: 1.23e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFktGDEWVKAvdrvSMTLTEGEIRGLVGESGSGKSLIAKAICGVNkdnwRVTADRMRFDDIDLLRLSARER 83
Cdd:COG3840 2 LRLDDLTYRY--GDFPLRF----DLTIAAGERVAILGPSGAGKSTLLNLIAGFL----PPDSGRILWNGQDLTALPPAER 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 RklvghnVSMIFQE----PQscLDpservgrqLMQNIPawtykgrwwqrFGWR---------KRRAIELLHRVGIKDHKD 150
Cdd:COG3840 72 P------VSMLFQEnnlfPH--LT--------VAQNIG-----------LGLRpglkltaeqRAQVEQALERVGLAGLLD 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 151 AMrsfPYELTEGECQKVMIAIALA-NQPrLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKI 229
Cdd:COG3840 125 RL---PGQLSGGQRQRVALARCLVrKRP-ILLLDEPFSALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRV 200
|
250 260 270
....*....|....*....|....*....|
gi 1277489719 230 NVLYCGQTVETAPSKELVTMPHHPYTQALI 259
Cdd:COG3840 201 LLVADGRIAADGPTAALLDGEPPPALAAYL 230
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
4-247 |
1.39e-17 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 83.29 E-value: 1.39e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFK------TGDEWVkaVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnWRVTADRMRFDDIDLLR 77
Cdd:COG1132 333 LPPVRGEIEFEnvsfsyPGDRPV--LKDISLTIPPGETVALVGPSGSGKSTLVNLLLRF----YDPTSGRILIDGVDIRD 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 78 LSARERRKlvghNVSMIFQEPQ----ScldpservgrqLMQNIpawtykgrwwqRFGwrKRRA-----IELLHRVGIKDH 148
Cdd:COG1132 407 LTLESLRR----QIGVVPQDTFlfsgT-----------IRENI-----------RYG--RPDAtdeevEEAAKAAQAHEF 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 149 kdaMRSFP--YE---------LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQnsNTTILLISH 217
Cdd:COG1132 459 ---IEALPdgYDtvvgergvnLSGGQRQRIAIARALLKDPPILILDEATSALDTETEALIQEALERLMK--GRTTIVIAH 533
|
250 260 270
....*....|....*....|....*....|
gi 1277489719 218 DLQMLsQWADKINVLYCGQTVETAPSKELV 247
Cdd:COG1132 534 RLSTI-RNADRILVLDDGRIVEQGTHEELL 562
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
1-265 |
1.41e-17 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 82.58 E-value: 1.41e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFktgdEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDLLRLSA 80
Cdd:PRK11607 17 TPLLEIRNLTKSF----DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP----TAGQIMLDGVDLSHVPP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERrklvghNVSMIFQepQSCLDPSERVgrqlMQNIPawtykgrwwqrFGWRKRRaielLHRVGIKDHKDAMRSF----- 155
Cdd:PRK11607 89 YQR------PINMMFQ--SYALFPHMTV----EQNIA-----------FGLKQDK----LPKAEIASRVNEMLGLvhmqe 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 156 -----PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPT----TQAQIFRLLTRLnqnsNTTILLISHDLQMLSQWA 226
Cdd:PRK11607 142 fakrkPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKlrdrMQLEVVDILERV----GVTCVMVTHDQEEAMTMA 217
|
250 260 270
....*....|....*....|....*....|....*....
gi 1277489719 227 DKINVLYCGQTVETAPSKELVTMPHHPYTQALIRAIPDF 265
Cdd:PRK11607 218 GRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVF 256
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
21-238 |
1.60e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 81.32 E-value: 1.60e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnWRVTADRMRFDDIDLLRLSARERRKLVGHNVSMIFQEPQS 100
Cdd:PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL----LQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPES 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 101 CLdpserVGRQLMQNIPAWTykgrwwQRFGWRKRRA----IELLHRVGIKdhKDAMRSFPYELTEGECQKVMIAIALANQ 176
Cdd:PRK13643 96 QL-----FEETVLKDVAFGP------QNFGIPKEKAekiaAEKLEMVGLA--DEFWEKSPFELSGGQMRRVAIAGILAME 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1277489719 177 PRLLIADEPTNSMEPTTQAQIFRLLTRLNQnSNTTILLISHDLQMLSQWADKINVLYCGQTV 238
Cdd:PRK13643 163 PEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLMDDVADYADYVYLLEKGHII 223
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
26-260 |
1.94e-17 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 80.40 E-value: 1.94e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 26 VSMTLTEGEIRGLVGESGSGKSLIAKAICGVNK--------DNWRVtadRMRFDDIDLLRLSARERRKLVGHNVSMIFQE 97
Cdd:PRK10619 24 VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKpsegsivvNGQTI---NLVRDKDGQLKVADKNQLRLLRTRLTMVFQH 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 98 PQ--SCLDPSERVGRQLMQNIPAWTYKGRwwqrfgwrkRRAIELLHRVGIKDHkdAMRSFPYELTEGECQKVMIAIALAN 175
Cdd:PRK10619 101 FNlwSHMTVLENVMEAPIQVLGLSKQEAR---------ERAVKYLAKVGIDER--AQGKYPVHLSGGQQQRVSIARALAM 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 176 QPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNtTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTMPHHPYT 255
Cdd:PRK10619 170 EPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGK-TMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSPRL 248
|
....*
gi 1277489719 256 QALIR 260
Cdd:PRK10619 249 QQFLK 253
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
3-251 |
2.21e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 81.44 E-value: 2.21e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 3 LLDIRNLTIEF--KTGDEwVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWR-------VTADRMRFDDI 73
Cdd:PRK13631 21 ILRVKNLYCVFdeKQENE-LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGtiqvgdiYIGDKKNNHEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 74 DLLRLS-----ARERRKLVghnvSMIFQEPQSCLDpSERVGRQLMQNIPAwtykgrwwqrFGWRKRRAIEL----LHRVG 144
Cdd:PRK13631 100 ITNPYSkkiknFKELRRRV----SMVFQFPEYQLF-KDTIEKDIMFGPVA----------LGVKKSEAKKLakfyLNKMG 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 145 IKDhkDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNsNTTILLISHDLQMLSQ 224
Cdd:PRK13631 165 LDD--SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN-NKTVFVITHTMEHVLE 241
|
250 260
....*....|....*....|....*..
gi 1277489719 225 WADKINVLYCGQTVETAPSKELVTMPH 251
Cdd:PRK13631 242 VADEVIVMDKGKILKTGTPYEIFTDQH 268
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
26-232 |
2.24e-17 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 81.69 E-value: 2.24e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 26 VSMTLTEGEIRGLVGESGSGKSLIAKAICGVNK-DNWRVT-ADRMRFDDIDLLRLSARERRklvghnVSMIFQEPQscLD 103
Cdd:COG4148 18 VDFTLPGRGVTALFGPSGSGKTTLLRAIAGLERpDSGRIRlGGEVLQDSARGIFLPPHRRR------IGYVFQEAR--LF 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 104 PSERVGRQLmqnipawTYkGRWWQRFGWRKRR---AIELLhrvGIKDHkdaMRSFPYELTEGECQKVMIAIALANQPRLL 180
Cdd:COG4148 90 PHLSVRGNL-------LY-GRKRAPRAERRISfdeVVELL---GIGHL---LDRRPATLSGGERQRVAIGRALLSSPRLL 155
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1277489719 181 IADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVL 232
Cdd:COG4148 156 LMDEPLAALDLARKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLL 207
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
4-238 |
3.17e-17 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 78.86 E-value: 3.17e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTgdewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNK-DNWRVTAD--RMRFDDIDLLRLSA 80
Cdd:cd03269 1 LEVENVTKRFGR----VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILpDSGEVLFDgkPLDIAARNRIGYLP 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERrklvGhnvsmifqepqscLDPSERVGRQLMqnipawtYKGrwwQRFGWRK----RRAIELLHRVGIKDHKDAMRSfp 156
Cdd:cd03269 77 EER----G-------------LYPKMKVIDQLV-------YLA---QLKGLKKeearRRIDEWLERLELSEYANKRVE-- 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 157 yELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLnQNSNTTILLISHDLQMLSQWADKINVLYCGQ 236
Cdd:cd03269 128 -ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIREL-ARAGKTVILSTHQMELVEELCDRVLLLNKGR 205
|
..
gi 1277489719 237 TV 238
Cdd:cd03269 206 AV 207
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
4-247 |
3.95e-17 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 78.34 E-value: 3.95e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEfktgDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKdnWRVTADRMRFDDIDLLRLSARER 83
Cdd:cd03217 1 LEIKDLHVS----VGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK--YEVTEGEILFKGEDITDLPPEER 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 RKLvghNVSMIFQEPQScldpservgrqlmqnIPawtykgrwwqrfgwrkrraiellhrvGIKDhKDAMRSFPYELTEGE 163
Cdd:cd03217 75 ARL---GIFLAFQYPPE---------------IP--------------------------GVKN-ADFLRYVNEGFSGGE 109
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 164 CQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNqNSNTTILLISHDLQMLSQW-ADKINVLYCGQTVETAP 242
Cdd:cd03217 110 KKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLR-EEGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKSGD 188
|
....*
gi 1277489719 243 sKELV 247
Cdd:cd03217 189 -KELA 192
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
13-232 |
4.48e-17 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 78.91 E-value: 4.48e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 13 FKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnWRVTADRMRFDDIdllrLSARERRKLVgHNVS 92
Cdd:cd03267 27 FKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGL----LQPTSGEVRVAGL----VPWKRRKKFL-RRIG 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 93 MIF-QEPQSCLDPSERVGRQLMQNI----PAwtykgrwwqRFGWRKRRAIELLhrvgikDHKDAMRSFPYELTEGECQKV 167
Cdd:cd03267 98 VVFgQKTQLWWDLPVIDSFYLLAAIydlpPA---------RFKKRLDELSELL------DLEELLDTPVRQLSLGQRMRA 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1277489719 168 MIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVL 232
Cdd:cd03267 163 EIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVI 227
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
1-248 |
4.75e-17 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 81.50 E-value: 4.75e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFKTgdewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNkdnwRVTADRMRFDDIDLLRLSA 80
Cdd:PRK11288 2 SPYLSFDGIGKTFPG----VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNY----QPDAGSILIDGQEMRFAST 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERrklVGHNVSMIFQEPQscLDPSERVgrqlMQNIpawtYKGRWWQRFGWRKR-----RAIELLHRVGIKDHKDAMRSf 155
Cdd:PRK11288 74 TAA---LAAGVAIIYQELH--LVPEMTV----AENL----YLGQLPHKGGIVNRrllnyEAREQLEHLGVDIDPDTPLK- 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 156 pyELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNsNTTILLISHDLQMLSQWADKINVLYCG 235
Cdd:PRK11288 140 --YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAE-GRVILYVSHRMEEIFALCDAITVFKDG 216
|
250
....*....|...
gi 1277489719 236 QTVETAPSKELVT 248
Cdd:PRK11288 217 RYVATFDDMAQVD 229
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
3-255 |
4.95e-17 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 81.41 E-value: 4.95e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 3 LLDIRNLTIEFktGDewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNK-DNWrvtADRMRFDDIDLLRLSAR 81
Cdd:TIGR02633 1 LLEMKGIVKTF--GG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPhGTW---DGEIYWSGSPLKASNIR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 82 ERRKlvgHNVSMIFQEPQSCLDPServgrqLMQNI---PAWTYKGRWwQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYE 158
Cdd:TIGR02633 74 DTER---AGIVIIHQELTLVPELS------VAENIflgNEITLPGGR-MAYNAMYLRAKNLLRELQLDADNVTRPVGDYG 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 159 LteGECQKVMIAIALANQPRLLIADEPTNSMEpTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTV 238
Cdd:TIGR02633 144 G--GQQQLVEIAKALNKQARLLILDEPSSSLT-EKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
250 260 270
....*....|....*....|....*....|..
gi 1277489719 239 ETAPSK-----ELVTM----------PHHPYT 255
Cdd:TIGR02633 221 ATKDMStmsedDIITMmvgreitslyPHEPHE 252
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
4-232 |
9.78e-17 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 79.81 E-value: 9.78e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTgdewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnwrVTAD--RMRFDDIDLL-RLSA 80
Cdd:COG1118 3 IEVRNISKRFGS----FTLLDDVSLEIASGELVALLGPSGSGKTTLLRIIAGL------ETPDsgRIVLNGRDLFtNLPP 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERRklVGhnvsMIFQEPQscldpservgrqLM------QNIpawtykgrwwqRFGWR---------KRRAIELLHRVGI 145
Cdd:COG1118 73 RERR--VG----FVFQHYA------------LFphmtvaENI-----------AFGLRvrppskaeiRARVEELLELVQL 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 146 KDHKDAmrsFPYELTEGECQKVMIAIALANQPRLLIADEP--------TNSMEpttqaqifRLLTRLNQNSNTTILLISH 217
Cdd:COG1118 124 EGLADR---YPSQLSGGQRQRVALARALAVEPEVLLLDEPfgaldakvRKELR--------RWLRRLHDELGGTTVFVTH 192
|
250
....*....|....*
gi 1277489719 218 DLQMLSQWADKINVL 232
Cdd:COG1118 193 DQEEALELADRVVVM 207
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
4-256 |
1.26e-16 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 77.96 E-value: 1.26e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTgDEWVKAVDrvsMTLTEGEIRGLVGESGSGKSLIAKA---ICGVNKDNwRVTAD-RMRFDDIDLLRLS 79
Cdd:PRK14267 5 IETVNLRVYYGS-NHVIKGVD---LKIPQNGVFALMGPSGCGKSTLLRTfnrLLELNEEA-RVEGEvRLFGRNIYSPDVD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 80 ARERRKLVGhnvsMIFQEPQSC--LDPSERVGRQLMQNIPAWTyKGRWWQRFGWRKRRAiELLHRVgikdhKDAMRSFPY 157
Cdd:PRK14267 80 PIEVRREVG----MVFQYPNPFphLTIYDNVAIGVKLNGLVKS-KKELDERVEWALKKA-ALWDEV-----KDRLNDYPS 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQnsNTTILLISHDLQMLSQWADKINVLYCGQT 237
Cdd:PRK14267 149 NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSPAQAARVSDYVAFLYLGKL 226
|
250
....*....|....*....
gi 1277489719 238 VETAPSKELVTMPHHPYTQ 256
Cdd:PRK14267 227 IEVGPTRKVFENPEHELTE 245
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
4-248 |
1.47e-16 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 78.13 E-value: 1.47e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFktGDEWVkaVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDLLRLSAREr 83
Cdd:PRK11231 3 LRTENLTVGY--GTKRI--LNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP----QSGTVFLGDKPISMLSSRQ- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 rklVGHNVSMIfqePQSCLDPSERVGRQLMQ--NIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAmrsfpyELTE 161
Cdd:PRK11231 74 ---LARRLALL---PQHHLTPEGITVRELVAygRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLT------DLSG 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLIsHDLQMLSQWADKINVLYCGQTVETA 241
Cdd:PRK11231 142 GQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVL-HDLNQASRYCDHLVVLANGHVMAQG 220
|
....*..
gi 1277489719 242 PSKELVT 248
Cdd:PRK11231 221 TPEEVMT 227
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
1-253 |
1.78e-16 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 78.96 E-value: 1.78e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFktGDewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKdnwrVTADRMRFDDIDLLRLSA 80
Cdd:COG3839 1 MASLELENVSKSY--GG--VEALKDIDLDIEDGEFLVLLGPSGCGKSTLLRMIAGLED----PTSGEILIGGRDVTDLPP 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERrklvghNVSMIFQEPQscLDPServgrqlM---QNIpawtykgrwwqRFGWR---------KRRAIELLHRVGIKDH 148
Cdd:COG3839 73 KDR------NIAMVFQSYA--LYPH-------MtvyENI-----------AFPLKlrkvpkaeiDRRVREAAELLGLEDL 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 149 KDamRsFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHD----LQMlsq 224
Cdd:COG3839 127 LD--R-KPKQLSGGQRQRVALGRALVREPKVFLLDEPLSNLDAKLRVEMRAEIKRLHRRLGTTTIYVTHDqveaMTL--- 200
|
250 260
....*....|....*....|....*....
gi 1277489719 225 wADKINVLYCGQTVETAPSKELVtmpHHP 253
Cdd:COG3839 201 -ADRIAVMNDGRIQQVGTPEELY---DRP 225
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
4-236 |
2.20e-16 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 75.72 E-value: 2.20e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTGDEWVkaVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGvnkdNWRVTADRMRFDDIDLLRLSARER 83
Cdd:cd03246 1 LEVENVSFRYPGAEPPV--LRNVSFSIEPGESLAIIGPSGSGKSTLARLILG----LLRPTSGRVRLDGADISQWDPNEL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 RKLVGHnvsmifqepqscldpservgrqLMQNIpawtykgrwwQRFGWRKRRAIellhrvgikdhkdamrsfpyeLTEGE 163
Cdd:cd03246 75 GDHVGY----------------------LPQDD----------ELFSGSIAENI---------------------LSGGQ 101
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1277489719 164 CQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLnQNSNTTILLISHDLQMLSQwADKINVLYCGQ 236
Cdd:cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAAL-KAAGATRIVIAHRPETLAS-ADRILVLEDGR 172
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
3-246 |
2.61e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 77.82 E-value: 2.61e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 3 LLDIRNLTIEFKTGDEWVK--AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnWRVTADRMRFDDIDLLRLS- 79
Cdd:PRK13633 4 MIKCKNVSYKYESNEESTEklALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL----LIPSEGKVYVDGLDTSDEEn 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 80 ARERRKLVGhnvsMIFQEPQScldpservgrQLMQNIPAWTYKgrwwqrFGWR---------KRRAIELLHRVGIKDHKd 150
Cdd:PRK13633 80 LWDIRNKAG----MVFQNPDN----------QIVATIVEEDVA------FGPEnlgippeeiRERVDESLKKVGMYEYR- 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 151 amRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQwADKIN 230
Cdd:PRK13633 139 --RHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRII 215
|
250
....*....|....*.
gi 1277489719 231 VLYCGQTVETAPSKEL 246
Cdd:PRK13633 216 VMDSGKVVMEGTPKEI 231
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
2-249 |
4.08e-16 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 78.67 E-value: 4.08e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEFKTgdewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDLLRLSAR 81
Cdd:PRK09700 4 PYISMAGIGKSFGP----VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP----TKGTITINNINYNKLDHK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 82 ERRKLvghNVSMIFQEpQSCLDPservgRQLMQNIpawtYKGRWWQR--FG-----WRK--RRAIELLHRVGIKDHKDam 152
Cdd:PRK09700 76 LAAQL---GIGIIYQE-LSVIDE-----LTVLENL----YIGRHLTKkvCGvniidWREmrVRAAMMLLRVGLKVDLD-- 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 153 rSFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMeptTQAQIFRLLTRLNQ--NSNTTILLISHDLQMLSQWADKIN 230
Cdd:PRK09700 141 -EKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL---TNKEVDYLFLIMNQlrKEGTAIVYISHKLAEIRRICDRYT 216
|
250 260
....*....|....*....|....
gi 1277489719 231 VLYCGQTVETA-----PSKELVTM 249
Cdd:PRK09700 217 VMKDGSSVCSGmvsdvSNDDIVRL 240
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
3-246 |
5.06e-16 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 76.65 E-value: 5.06e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 3 LLDIRNLTIEFKTGDEwvkAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNK-DNWRVTAD--RMRFDDIDLLrls 79
Cdd:PRK13639 1 ILETRDLKYSYPDGTE---ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKpTSGEVLIKgePIKYDKKSLL--- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 80 arERRKLVGhnvsMIFQEPQSCL-DPS--ERVGRQLMQnipawtykgrwwqrFGWRK----RRAIELLHRVGIKDHKdam 152
Cdd:PRK13639 75 --EVRKTVG----IVFQNPDDQLfAPTveEDVAFGPLN--------------LGLSKeeveKRVKEALKAVGMEGFE--- 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 153 RSFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSnTTILLISHDLQMLSQWADKINVL 232
Cdd:PRK13639 132 NKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEG-ITIIISTHDVDLVPVYADKVYVM 210
|
250
....*....|....
gi 1277489719 233 YCGQTVETAPSKEL 246
Cdd:PRK13639 211 SDGKIIKEGTPKEV 224
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
21-246 |
1.33e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 75.83 E-value: 1.33e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNK--------DNWRVTADRmrfDDIDLLRLsarerRKLVGhnvs 92
Cdd:PRK13634 21 RALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQptsgtvtiGERVITAGK---KNKKLKPL-----RKKVG---- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 93 MIFQEPQSCLDpSERVGRQLM---QNipawtykgrwwqrFGWR----KRRAIELLHRVGIkDHKDAMRSfPYELTEGECQ 165
Cdd:PRK13634 89 IVFQFPEHQLF-EETVEKDICfgpMN-------------FGVSeedaKQKAREMIELVGL-PEELLARS-PFELSGGQMR 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 166 KVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKE 245
Cdd:PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232
|
.
gi 1277489719 246 L 246
Cdd:PRK13634 233 I 233
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
3-238 |
2.14e-15 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 73.94 E-value: 2.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 3 LLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnWRVTADRMRFDDIDLLRLSARE 82
Cdd:cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL----LEPDAGFATVDGFDVVKEPAEA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 83 RRKLVGHNVSMIFQEPQScldpservGRQLMQnipawtykgrWWQRFGWRKRRAI-----ELLHRVGIKDHKDAMRSfpy 157
Cdd:cd03266 77 RRRLGFVSDSTGLYDRLT--------ARENLE----------YFAGLYGLKGDELtarleELADRLGMEELLDRRVG--- 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLnQNSNTTILLISHDLQMLSQWADKINVLYCGQT 237
Cdd:cd03266 136 GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQL-RALGKCILFSTHIMQEVERLCDRVVVLHRGRV 214
|
.
gi 1277489719 238 V 238
Cdd:cd03266 215 V 215
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
4-220 |
2.89e-15 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 73.28 E-value: 2.89e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIefKTGDEWVkaVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTAdRMRFDDIDLLRLSARER 83
Cdd:COG4136 2 LSLENLTI--TLGGRPL--LAPLSLTVAPGEILTLMGPSGSGKSTLLAAIAGTLSPAFSASG-EVLLNGRRLTALPAEQR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 RklvghnVSMIFQEPQscLDPSERVGRQLMQNIPAWTYKGRwwqrfgwRKRRAIELLHRVGIKDHKDAmrsFPYELTEGE 163
Cdd:COG4136 77 R------IGILFQDDL--LFPHLSVGENLAFALPPTIGRAQ-------RRARVEQALEEAGLAGFADR---DPATLSGGQ 138
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1277489719 164 CQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRL-LTRLnQNSNTTILLISHDLQ 220
Cdd:COG4136 139 RARVALLRALLAEPRALLLDEPFSKLDAALRAQFREFvFEQI-RQRGIPALLVTHDEE 195
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
1-250 |
3.21e-15 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 74.45 E-value: 3.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFKTGdewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDLLRLSA 80
Cdd:PRK13652 1 MHLIETRDLCYSYSGS---KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP----TSGSVLIRGEPITKENI 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERRKLVGhnvsMIFQEPQ-SCLDPServgrqLMQNIPawtykgrwwqrFG---------WRKRRAIELLHRVGIKDHKD 150
Cdd:PRK13652 74 REVRKFVG----LVFQNPDdQIFSPT------VEQDIA-----------FGpinlgldeeTVAHRVSSALHMLGLEELRD 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 151 AMrsfPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKIN 230
Cdd:PRK13652 133 RV---PHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIY 209
|
250 260
....*....|....*....|
gi 1277489719 231 VLYCGQTVETAPSKELVTMP 250
Cdd:PRK13652 210 VMDKGRIVAYGTVEEIFLQP 229
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
11-247 |
8.13e-15 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 72.52 E-value: 8.13e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 11 IEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVN-KDNWRVTADRMRFDDIDLLRLsareRRKlvgh 89
Cdd:cd03252 6 VRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYvPENGRVLVDGHDLALADPAWL----RRQ---- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 90 nVSMIFQEpqscldpSERVGRQLMQNIPAwtykgrwwQRFGWRKRRAIELLHRVGIKDHkdaMRSFP--YE--------- 158
Cdd:cd03252 78 -VGVVLQE-------NVLFNRSIRDNIAL--------ADPGMSMERVIEAAKLAGAHDF---ISELPegYDtivgeqgag 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNqnSNTTILLISHDLQMLSQwADKINVLYCGQTV 238
Cdd:cd03252 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC--AGRTVIIIAHRLSTVKN-ADRIIVMEKGRIV 215
|
....*....
gi 1277489719 239 ETAPSKELV 247
Cdd:cd03252 216 EQGSHDELL 224
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
25-238 |
9.44e-15 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 72.14 E-value: 9.44e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 25 RVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDLLRLSARERrklvghNVSMIFQEPQ--SCL 102
Cdd:cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP----QSGRVLINGVDVTAAPPADR------PVSMLFQENNlfAHL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 103 DPSERVGRQLMQNIpawtykgrwwqRFGWRKRRAIE-LLHRVGIkDHKDAMRsfPYELTEGECQKVMIAIALANQPRLLI 181
Cdd:cd03298 86 TVEQNVGLGLSPGL-----------KLTAEDRQAIEvALARVGL-AGLEKRL--PGELSGGERQRVALARVLVRDKPVLL 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1277489719 182 ADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTV 238
Cdd:cd03298 152 LDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
4-247 |
1.34e-14 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 71.88 E-value: 1.34e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTieFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnWRVTADRMRFDDIDLLRLSARER 83
Cdd:cd03251 1 VEFKNVT--FRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRF----YDVDSGRILIDGHDVRDYTLASL 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 RKLVGhNVS---MIFQEpqscldpservgrQLMQNIpawtykgrwwqRFGWRK------RRAIELLHRvgikdHkDAMRS 154
Cdd:cd03251 75 RRQIG-LVSqdvFLFND-------------TVAENI-----------AYGRPGatreevEEAARAANA-----H-EFIME 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 155 FP--YE---------LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSntTILLISHDLQMLS 223
Cdd:cd03251 124 LPegYDtvigergvkLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNR--TTFVIAHRLSTIE 201
|
250 260
....*....|....*....|....
gi 1277489719 224 QwADKINVLYCGQTVETAPSKELV 247
Cdd:cd03251 202 N-ADRIVVLEDGKIVERGTHEELL 224
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
3-248 |
3.66e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 71.58 E-value: 3.66e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 3 LLDIRNLTIEFKTGDEWvKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICG--VNKDNWRVTADRMRFDDIDLLRLSA 80
Cdd:PRK13645 8 ILDNVSYTYAKKTPFEF-KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGliISETGQTIVGDYAIPANLKKIKEVK 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERRKlvghnVSMIFQEP-----QSCLDPSERVGRQLMQNIPAWTYKgrwwqrfgwrkrRAIELLHRVGIKdhKDAMRSF 155
Cdd:PRK13645 87 RLRKE-----IGLVFQFPeyqlfQETIEKDIAFGPVNLGENKQEAYK------------KVPELLKLVQLP--EDYVKRS 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCG 235
Cdd:PRK13645 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEG 227
|
250
....*....|...
gi 1277489719 236 QTVETAPSKELVT 248
Cdd:PRK13645 228 KVISIGSPFEIFS 240
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
4-238 |
4.22e-14 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 71.68 E-value: 4.22e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTgdewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnwrVTAD--RMRFDDIDLLRLSAR 81
Cdd:COG4152 2 LELKGLTKRFGD----KTAVDDVSFTVPKGEIFGLLGPNGAGKTTTIRIILGI------LAPDsgEVLWDGEPLDPEDRR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 82 -------ERRklvghnvsmifqepqscLDPSERVGRQLmqnipawTYKGRwwqRFGWRK----RRAIELLHRVGIKDHKD 150
Cdd:COG4152 72 rigylpeERG-----------------LYPKMKVGEQL-------VYLAR---LKGLSKaeakRRADEWLERLGLGDRAN 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 151 AMRSfpyELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNsNTTILLISHDLQMLSQWADKIN 230
Cdd:COG4152 125 KKVE---ELSKGNQQKVQLIAALLHDPELLILDEPFSGLDPVNVELLKDVIRELAAK-GTTVIFSSHQMELVEELCDRIV 200
|
....*...
gi 1277489719 231 VLYCGQTV 238
Cdd:COG4152 201 IINKGRKV 208
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
2-246 |
5.95e-14 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 72.36 E-value: 5.95e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEfktgdewvKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNkdnwRVTADRMRFDDIDLLRLSAR 81
Cdd:COG1129 255 VVLEVEGLSVG--------GVVRDVSFSVRAGEILGIAGLVGAGRTELARALFGAD----PADSGEIRLDGKPVRIRSPR 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 82 ER-----------RKL--------VGHNVSMIFQEpqscldpseRVGRqlmqnipawtykgRWWQRFGWRKRRAIELLHR 142
Cdd:COG1129 323 DAiragiayvpedRKGeglvldlsIRENITLASLD---------RLSR-------------GGLLDRRRERALAEEYIKR 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 143 VGIK--DHKDAMRSfpyeLTEGECQKVMIAIALANQPRLLIADEPtnsmeptTQ-------AQIFRLLTRLNQNsNTTIL 213
Cdd:COG1129 381 LRIKtpSPEQPVGN----LSGGNQQKVVLAKWLATDPKVLILDEP-------TRgidvgakAEIYRLIRELAAE-GKAVI 448
|
250 260 270
....*....|....*....|....*....|...
gi 1277489719 214 LISHDLQMLSQWADKINVLYCGQTVETAPSKEL 246
Cdd:COG1129 449 VISSELPELLGLSDRILVMREGRIVGELDREEA 481
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
3-246 |
8.64e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 70.53 E-value: 8.64e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 3 LLDIRNLTIEFKTGDEWVkAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV---NKDNWRVTADRMRFDDIDLLRls 79
Cdd:PRK13650 4 IIEVKNLTFKYKEDQEKY-TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLleaESGQIIIDGDLLTEENVWDIR-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 80 arerrklvgHNVSMIFQEPQscldpSERVGRQLMQNIP-AWTYKGRWWQRFgwrKRRAIELLHRVGIKDHKDAMrsfPYE 158
Cdd:PRK13650 81 ---------HKIGMVFQNPD-----NQFVGATVEDDVAfGLENKGIPHEEM---KERVNEALELVGMQDFKERE---PAR 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSqWADKINVLYCGQTV 238
Cdd:PRK13650 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVE 219
|
....*...
gi 1277489719 239 ETAPSKEL 246
Cdd:PRK13650 220 STSTPREL 227
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
1-220 |
1.25e-13 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 69.54 E-value: 1.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFKTGdewvKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICG-VNKDNWRVTADRmrfDDIDLLRLS 79
Cdd:PRK10895 1 MATLTAKNLAKAYKGR----RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGiVPRDAGNIIIDD---EDISLLPLH 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 80 ARERRklvghNVSMIFQEPQ-----SCLDPSERVgRQLMQNIPAWTykgrwwqrfgwRKRRAIELLHRVGIKDHKDAMRS 154
Cdd:PRK10895 74 ARARR-----GIGYLPQEASifrrlSVYDNLMAV-LQIRDDLSAEQ-----------REDRANELMEEFHIEHLRDSMGQ 136
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1277489719 155 fpyELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLnQNSNTTILLISHDLQ 220
Cdd:PRK10895 137 ---SLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHL-RDSGLGVLITDHNVR 198
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
22-238 |
1.98e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 69.25 E-value: 1.98e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnWRVTADRMRFDDIDLLRLSA-RERRKLVGhnvsMIFQEPQs 100
Cdd:PRK13644 17 ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL----LRPQKGKVLVSGIDTGDFSKlQGIRKLVG----IVFQNPE- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 101 cldpSERVGRQLMQNIpAWTYKGRWWQRFGWRKR--RAielLHRVGIKDHKdaMRSfPYELTEGECQKVMIAIALANQPR 178
Cdd:PRK13644 88 ----TQFVGRTVEEDL-AFGPENLCLPPIEIRKRvdRA---LAEIGLEKYR--HRS-PKTLSGGQGQCVALAGILTMEPE 156
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 179 LLIADEPTNSMEPTTQAQIFRLLTRLNQNSNtTILLISHDLQMLsQWADKINVLYCGQTV 238
Cdd:PRK13644 157 CLIFDEVTSMLDPDSGIAVLERIKKLHEKGK-TIVYITHNLEEL-HDADRIIVMDRGKIV 214
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
4-248 |
2.68e-13 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 68.34 E-value: 2.68e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTGdewvKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNkdnwRVTADRMRFDDIDLLRLSARER 83
Cdd:cd03218 1 LRAENLSKRYGKR----KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV----KPDSGKILLDGQDITKLPMHKR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 RKLvghNVSMIFQEPQscldpserVGRQLM--QNIPA---WTYKGRWwqrfgWRKRRAIELLHRVGIKDHKDamrSFPYE 158
Cdd:cd03218 73 ARL---GIGYLPQEAS--------IFRKLTveENILAvleIRGLSKK-----EREEKLEELLEEFHITHLRK---SKASS 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNqNSNTTILLISHDLQMLSQWADKINVLYCGQTV 238
Cdd:cd03218 134 LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILK-DRGIGVLITDHNVRETLSITDRAYIIYEGKVL 212
|
250
....*....|
gi 1277489719 239 ETAPSKELVT 248
Cdd:cd03218 213 AEGTPEEIAA 222
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
6-238 |
6.17e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 68.19 E-value: 6.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 6 IRNLTIEFKTGDEWV-KAVDRVSMTLTEGEIRGLVGESGSGKS--------LIAKAICGVN------KDNWRVTADRMRF 70
Cdd:PRK13651 5 VKNIVKIFNKKLPTElKALDNVSVEINQGEFIAIIGQTGSGKTtfiehlnaLLLPDTGTIEwifkdeKNKKKTKEKEKVL 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 71 DDIDLLRLSAR------ERRKLVGhnVSMIFQEPQSCldpSERVGRQLMqnipawtykgrwwqrFGWR---------KRR 135
Cdd:PRK13651 85 EKLVIQKTRFKkikkikEIRRRVG--VVFQFAEYQLF---EQTIEKDII---------------FGPVsmgvskeeaKKR 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 136 AIELLHRVGIkDHKDAMRSfPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNsNTTILLI 215
Cdd:PRK13651 145 AAKYIELVGL-DESYLQRS-PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ-GKTIILV 221
|
250 260
....*....|....*....|...
gi 1277489719 216 SHDLQMLSQWADKINVLYCGQTV 238
Cdd:PRK13651 222 THDLDNVLEWTKRTIFFKDGKII 244
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
3-246 |
6.49e-13 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 67.95 E-value: 6.49e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 3 LLDIRNLTIEFKTGDEwvkAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDD--IDLLRLSA 80
Cdd:PRK13636 5 ILKVEELNYNYSDGTH---ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP----SSGRILFDGkpIDYSRKGL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERRKLVGhnvsMIFQEPQScldpservgrqlmQNIPAWTYKGRWWQRFGWR------KRRAIELLHRVGIKDHKDAMrs 154
Cdd:PRK13636 78 MKLRESVG----MVFQDPDN-------------QLFSASVYQDVSFGAVNLKlpedevRKRVDNALKRTGIEHLKDKP-- 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 155 fPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYC 234
Cdd:PRK13636 139 -THCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKE 217
|
250
....*....|..
gi 1277489719 235 GQTVETAPSKEL 246
Cdd:PRK13636 218 GRVILQGNPKEV 229
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
24-217 |
6.61e-13 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 66.91 E-value: 6.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 24 DRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwRVTADRMRFDDIDLlrlsarerrklvGHNVSMIfqepqscld 103
Cdd:COG2401 47 RDLNLEIEPGEIVLIVGASGSGKSTLLRLLAGALKG--TPVAGCVDVPDNQF------------GREASLI--------- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 104 psERVGRQlmQNIPAwtykgrwwqrfgwrkrrAIELLHRVGIKDHKDAMRSFPyELTEGECQKVMIAIALANQPRLLIAD 183
Cdd:COG2401 104 --DAIGRK--GDFKD-----------------AVELLNAVGLSDAVLWLRRFK-ELSTGQKFRFRLALLLAERPKLLVID 161
|
170 180 190
....*....|....*....|....*....|....
gi 1277489719 184 EPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISH 217
Cdd:COG2401 162 EFCSHLDRQTAKRVARNLQKLARRAGITLVVATH 195
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
22-220 |
6.74e-13 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 67.42 E-value: 6.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICG-VNKDNWRVTADRMRFDDidllrlSARERrklvghnvSMIFQEP-- 98
Cdd:PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGfVPYQHGSITLDGKPVEG------PGAER--------GVVFQNEgl 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 99 ---QSCLDPSErVGRQLmqnipAWTYKGRwwqrfgwRKRRAIELLHRVGIKDhkdAMRSFPYELTEGECQKVMIAIALAN 175
Cdd:PRK11248 82 lpwRNVQDNVA-FGLQL-----AGVEKMQ-------RLEIAHQMLKKVGLEG---AEKRYIWQLSGGQRQRVGIARALAA 145
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1277489719 176 QPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQ 220
Cdd:PRK11248 146 NPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE 190
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
21-232 |
8.33e-13 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 68.19 E-value: 8.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 21 KAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNwrvtADRMRFDDIDLLRLSARERRklvghnVSMIFQEpqs 100
Cdd:PRK10851 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT----SGHIRFHGTDVSRLHARDRK------VGFVFQH--- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 101 cldpsERVGRQL--MQNIPawtykgrwwqrFGWR-------------KRRAIELLHRVGIkDHKdAMRsFPYELTEGECQ 165
Cdd:PRK10851 83 -----YALFRHMtvFDNIA-----------FGLTvlprrerpnaaaiKAKVTQLLEMVQL-AHL-ADR-YPAQLSGGQKQ 143
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1277489719 166 KVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVL 232
Cdd:PRK10851 144 RVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVM 210
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
26-240 |
1.22e-12 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 66.58 E-value: 1.22e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 26 VSMTLTEGEIRGLVGESGSGKSLIAKAIcgvN----KDNWRVTADRMRFD--------DIDLLRlsarerrklvgHNVSM 93
Cdd:PRK11124 21 ITLDCPQGETLVLLGPSGAGKSSLLRVL---NllemPRSGTLNIAGNHFDfsktpsdkAIRELR-----------RNVGM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 94 IFQepQSCLDPSERVgrqlMQN-IPAWTykgrwwQRFGWRK----RRAIELLHRVGIKDHKDAmrsFPYELTEGECQKVM 168
Cdd:PRK11124 87 VFQ--QYNLWPHLTV----QQNlIEAPC------RVLGLSKdqalARAEKLLERLRLKPYADR---FPLHLSGGQQQRVA 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1277489719 169 IAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLnQNSNTTILLISHDLQMLSQWADKinVLYC--GQTVET 240
Cdd:PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIREL-AETGITQVIVTHEVEVARKTASR--VVYMenGHIVEQ 222
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-238 |
1.92e-12 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 66.06 E-value: 1.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFKTgdewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGvnkdNWRVTADRMRFDDIDLlrlsa 80
Cdd:PRK11614 3 KVMLSFDKVSAHYGK----IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG----DPRATSGRIVFDGKDI----- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 rerrklVGHNVSMIFQEPQSCLDPSERVGRQLM--QNIPAWTYKGRWwQRFGWRKRRAIELLHRVGIKDHKDAMrsfpyE 158
Cdd:PRK11614 70 ------TDWQTAKIMREAVAIVPEGRRVFSRMTveENLAMGGFFAER-DQFQERIKWVYELFPRLHERRIQRAG-----T 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSnTTILLISHDLQMLSQWADKINVLYCGQTV 238
Cdd:PRK11614 138 MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQG-MTIFLVEQNANQALKLADRGYVLENGHVV 216
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
1-246 |
1.02e-11 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 65.42 E-value: 1.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTieFKTGDEWVKAVDrvSMTLTEGEIRGLVGESGSGKSLIAKAICGvnkDNWRVTADRM-RFDDIdlLRLS 79
Cdd:PRK10938 1 MSSLQISQGT--FRLSDTKTLQLP--SLTLNAGDSWAFVGANGSGKSALARALAG---ELPLLSGERQsQFSHI--TRLS 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 80 ARERRKLVghnvSMIFQEPQS-CLDPSE----RVGRQLMQNipawtykgrwwqrfGWRKR-RAIELLHRVGIKDHKDamR 153
Cdd:PRK10938 72 FEQLQKLV----SDEWQRNNTdMLSPGEddtgRTTAEIIQD--------------EVKDPaRCEQLAQQFGITALLD--R 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 154 SFPYeLTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQnSNTTILLISHDLQMLSQWADKINVLY 233
Cdd:PRK10938 132 RFKY-LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SGITLVLVLNRFDEIPDFVQFAGVLA 209
|
250
....*....|...
gi 1277489719 234 CGQTVETAPSKEL 246
Cdd:PRK10938 210 DCTLAETGEREEI 222
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
20-247 |
1.29e-11 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 63.33 E-value: 1.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAIcgvnkdnWR---VTADRMRFDDIDLLRLSARERRKLVGhnvsMIFQ 96
Cdd:cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLL-------ERfydPTSGEILLDGVDIRDLNLRWLRSQIG----LVSQ 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 97 EPQsCLDPServgrqLMQNIpawtykgrwwqRFGWRKRRAIELLHRVGIKDHKDAMRSFPY-----------ELTEGECQ 165
Cdd:cd03249 85 EPV-LFDGT------IAENI-----------RYGKPDATDEEVEEAAKKANIHDFIMSLPDgydtlvgergsQLSGGQKQ 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 166 KVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQnsNTTILLISHDLQMLsQWADKINVLYCGQTVETAPSKE 245
Cdd:cd03249 147 RIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMK--GRTTIVIAHRLSTI-RNADLIAVLQNGQVVEQGTHDE 223
|
..
gi 1277489719 246 LV 247
Cdd:cd03249 224 LM 225
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
20-249 |
1.86e-11 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 64.75 E-value: 1.86e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNwrvtADRMRFDDIDLLRLSARERrklVGHNVSMIFQEPQ 99
Cdd:PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQGKEIDFKSSKEA---LENGISMVHQELN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 100 SCLDpservgRQLMQNIPAWTYKGRWW---QRFGWRKRRAIelLHRVGIK-DHKDAMRSfpyeLTEGECQKVMIAIALAN 175
Cdd:PRK10982 84 LVLQ------RSVMDNMWLGRYPTKGMfvdQDKMYRDTKAI--FDELDIDiDPRAKVAT----LSVSQMQMIEIAKAFSY 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1277489719 176 QPRLLIADEPTNSMEPTTQAQIFRLLTRLnQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELvTM 249
Cdd:PRK10982 152 NAKIVIMDEPTSSLTEKEVNHLFTIIRKL-KERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGL-TM 223
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
2-232 |
2.70e-11 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 62.70 E-value: 2.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEFKTgdewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnWRVTADRMRFDDIDLLRLSAR 81
Cdd:PRK11300 4 PLLSVSGLMMRFGG----LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF----YKPTGGTILLRGQHIEGLPGH 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 82 E--RRKLVG--HNVSMiFQEpqscLDPSERV----GRQLMQNIPAWTYKGRWWQRfgwRKRRAIEL----LHRVGIKDHk 149
Cdd:PRK11300 76 QiaRMGVVRtfQHVRL-FRE----MTVIENLlvaqHQQLKTGLFSGLLKTPAFRR---AESEALDRaatwLERVGLLEH- 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 150 dAMRSfPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKI 229
Cdd:PRK11300 147 -ANRQ-AGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRI 224
|
...
gi 1277489719 230 NVL 232
Cdd:PRK11300 225 YVV 227
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
20-220 |
3.75e-11 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 63.18 E-value: 3.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnWRVTADRMRFDDIDllrlSARERRKLVgHNVSMIF-Qep 98
Cdd:COG4586 35 VEAVDDISFTIEPGEIVGFIGPNGAGKSTTIKMLTGI----LVPTSGEVRVLGYV----PFKRRKEFA-RRIGVVFgQ-- 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 99 qscldpservgR-QLMQNIPAW-TYkgrwwqrfgwrkrraiELL---HRVGIKDHKDAMRsfpyELTE------------ 161
Cdd:COG4586 104 -----------RsQLWWDLPAIdSF----------------RLLkaiYRIPDAEYKKRLD----ELVElldlgelldtpv 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1277489719 162 -----GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQ 220
Cdd:COG4586 153 rqlslGQRMRCELAAALLHRPKILFLDEPTIGLDVVSKEAIREFLKEYNRERGTTILLTSHDMD 216
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
1-253 |
9.91e-11 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 61.28 E-value: 9.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFktGDEwvKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGvnkdnwrvtadrmrfddidllrLSA 80
Cdd:PRK09544 2 TSLVSLENVSVSF--GQR--RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLG----------------------LVA 55
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERRKLVGHNVSMIFQEPQSC-LDPSE--RVGRQLMQnipawtykgrwwqRFGWRKRRAIELLHRVgikdHKDAMRSFPY 157
Cdd:PRK09544 56 PDEGVIKRNGKLRIGYVPQKLyLDTTLplTVNRFLRL-------------RPGTKKEDILPALKRV----QAGHLIDAPM 118
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 158 E-LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKinVLYCGQ 236
Cdd:PRK09544 119 QkLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDE--VLCLNH 196
|
250
....*....|....*..
gi 1277489719 237 TVETAPSKELVTMphHP 253
Cdd:PRK09544 197 HICCSGTPEVVSL--HP 211
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
4-239 |
1.24e-10 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 62.43 E-value: 1.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTgDEWVkaVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGvnkdNWRVTADRMRFDDIDLLRLSARER 83
Cdd:PRK10790 341 IDIDNVSFAYRD-DNLV--LQNINLSVPSRGFVALVGHTGSGKSTLASLLMG----YYPLTEGEIRLDGRPLSSLSHSVL 413
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 RKlvghNVSMIFQEPQSCLDP---SERVGRQLMQNipawtykgRWWQrfgwrkrrAIELLHRVgikdhkDAMRSFPYELT 160
Cdd:PRK10790 414 RQ----GVAMVQQDPVVLADTflaNVTLGRDISEE--------QVWQ--------ALETVQLA------ELARSLPDGLY 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 161 E--GE-------CQKVMIAIA--LANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNsnTTILLISHDLQMLSQwADKI 229
Cdd:PRK10790 468 TplGEqgnnlsvGQKQLLALArvLVQTPQILILDEATANIDSGTEQAIQQALAAVREH--TTLVVIAHRLSTIVE-ADTI 544
|
250
....*....|
gi 1277489719 230 NVLYCGQTVE 239
Cdd:PRK10790 545 LVLHRGQAVE 554
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
2-229 |
2.13e-10 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 60.08 E-value: 2.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLdIRNLTIEFKtGDEWVKAVDrvsMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNwrvtadrmrfdDIDLLRLSA- 80
Cdd:PRK11247 12 PLL-LNAVSKRYG-ERTVLNQLD---LHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS-----------AGELLAGTAp 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 ----RErrklvghNVSMIFQEPQscLDPSERVgrqlMQNIpAWTYKGRWwqrfgwrKRRAIELLHRVGIKDHKDamrSFP 156
Cdd:PRK11247 76 laeaRE-------DTRLMFQDAR--LLPWKKV----IDNV-GLGLKGQW-------RDAALQALAAVGLADRAN---EWP 131
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1277489719 157 YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKI 229
Cdd:PRK11247 132 AALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRV 204
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
26-271 |
2.81e-10 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 59.80 E-value: 2.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 26 VSMTLTEGEIRGLVGESGSGKSliakaicgvnkdnwrvtadrmrfddiDLLRLSARERRKLVGHnvSMIFQEPQSCLDpS 105
Cdd:PRK10575 30 LSLTFPAGKVTGLIGHNGSGKS--------------------------TLLKMLGRHQPPSEGE--ILLDAQPLESWS-S 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 106 ERVGRQ---LMQNIPA---WTYK-----GRW-WQ----RFGWRKRRAI-ELLHRVGIKDHKDAMRSfpyELTEGECQKVM 168
Cdd:PRK10575 81 KAFARKvayLPQQLPAaegMTVRelvaiGRYpWHgalgRFGAADREKVeEAISLVGLKPLAHRLVD---SLSGGERQRAW 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 169 IAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVt 248
Cdd:PRK10575 158 IAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM- 236
|
250 260
....*....|....*....|...
gi 1277489719 249 mphHPYTQALIRAIPdfGSAMPH 271
Cdd:PRK10575 237 ---RGETLEQIYGIP--MGILPH 254
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
6-248 |
3.31e-10 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 59.90 E-value: 3.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 6 IRNLTIEFKTGDewvKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNkdnwrvtadRMRFDDIDLLRLSARE--R 83
Cdd:PRK15056 9 VNDVTVTWRNGH---TALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFV---------RLASGKISILGQPTRQalQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 RKLVGHnvsmifqEPQscldpSERVGRQLMQNIPAWTYKGRW----WQRFGWRKRRAI--ELLHRVGIKDHKDAMRSfpy 157
Cdd:PRK15056 77 KNLVAY-------VPQ-----SEEVDWSFPVLVEDVVMMGRYghmgWLRRAKKRDRQIvtAALARVDMVEFRHRQIG--- 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLnQNSNTTILLISHDLQMLSQWADkINVLYCGQT 237
Cdd:PRK15056 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLREL-RDEGKTMLVSTHNLGSVTEFCD-YTVMVKGTV 219
|
250
....*....|.
gi 1277489719 238 VETAPSKELVT 248
Cdd:PRK15056 220 LASGPTETTFT 230
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
2-248 |
4.32e-10 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 60.45 E-value: 4.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEFkTGDEWVKAVDrvsMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnwrVTAD--RMRFDDIDLLRLS 79
Cdd:PRK15439 10 PLLCARSISKQY-SGVEVLKGID---FTLHAGEVHALLGGNGAGKSTLMKIIAGI------VPPDsgTLEIGGNPCARLT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 80 ARERRKLvghNVSMIFQEPQscLDPSERVgrqlMQNIpawtykgrwwqRFGW-----RKRRAIELLHRVGIKDHKDAMRS 154
Cdd:PRK15439 80 PAKAHQL---GIYLVPQEPL--LFPNLSV----KENI-----------LFGLpkrqaSMQKMKQLLAALGCQLDLDSSAG 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 155 fpyELTEGECQKVMIAIALANQPRLLIADEPTNSMEPttqAQIFRLLTRLN--QNSNTTILLISHDLQMLSQWADKINVL 232
Cdd:PRK15439 140 ---SLEVADRQIVEILRGLMRDSRILILDEPTASLTP---AETERLFSRIRelLAQGVGIVFISHKLPEIRQLADRISVM 213
|
250
....*....|....*.
gi 1277489719 233 YCGQTVETAPSKELVT 248
Cdd:PRK15439 214 RDGTIALSGKTADLST 229
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
11-239 |
1.06e-09 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 57.54 E-value: 1.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 11 IEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNK-DNWRVTADRmrfddidllrlsarerrklvgh 89
Cdd:cd03220 26 LGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPpDSGTVTVRG---------------------- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 90 NVSMIFqEPQSCLDPsERVGRqlmQNIpawTYKGRWWqrfGWRKRRAIELLHRV----GIKDHKDA--------MRSfpy 157
Cdd:cd03220 84 RVSSLL-GLGGGFNP-ELTGR---ENI---YLNGRLL---GLSRKEIDEKIDEIiefsELGDFIDLpvktyssgMKA--- 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 158 eltegecqKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSnTTILLISHDLQMLSQWADKINVLYCGQT 237
Cdd:cd03220 150 --------RLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQG-KTVILVSHDPSSIKRLCDRALVLEKGKI 220
|
..
gi 1277489719 238 VE 239
Cdd:cd03220 221 RF 222
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
4-250 |
1.34e-09 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 58.58 E-value: 1.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFktGDEWVkaVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDLLRLSARER 83
Cdd:PRK11432 7 VVLKNITKRF--GSNTV--IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP----TEGQIFIDGEDVTHRSIQQR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 rklvghNVSMIFQE----PQSCLdpSERVGRQL-MQNIPAWTYKGRwwqrfgwrKRRAIELLHRVGIKDHkdamrsFPYE 158
Cdd:PRK11432 79 ------DICMVFQSyalfPHMSL--GENVGYGLkMLGVPKEERKQR--------VKEALELVDLAGFEDR------YVDQ 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTV 238
Cdd:PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIM 216
|
250
....*....|..
gi 1277489719 239 ETAPSKELVTMP 250
Cdd:PRK11432 217 QIGSPQELYRQP 228
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
4-239 |
1.37e-09 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 57.04 E-value: 1.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFktGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICG-VNKDNWRVTADRMRFDDIDLLRLsare 82
Cdd:cd03369 7 IEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRfLEAEEGKIEIDGIDISTIPLEDL---- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 83 RRKLvghnvSMIFQEP-------QSCLDPSERvgrqlmqnipawtYKGRwwqrfgwrkrraiELLHRVGIKDHKDamrsf 155
Cdd:cd03369 81 RSSL-----TIIPQDPtlfsgtiRSNLDPFDE-------------YSDE-------------EIYGALRVSEGGL----- 124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 156 pyELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSntTILLISHDLQMLSQWaDKINVLYCG 235
Cdd:cd03369 125 --NLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNS--TILTIAHRLRTIIDY-DKILVMDAG 199
|
....
gi 1277489719 236 QTVE 239
Cdd:cd03369 200 EVKE 203
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
23-247 |
1.63e-09 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 58.30 E-value: 1.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 23 VDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnwrVTADRmrfDDIDLLRLSARERRKLVGHNVSMIfqePQ-SC 101
Cdd:PRK13536 57 VNGLSFTVASGECFGLLGPNGAGKSTIARMILGM------TSPDA---GKITVLGVPVPARARLARARIGVV---PQfDN 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 102 LDPSERVGRQLMqnipawtYKGRWWqRFGWRKRRAI--ELLHRVGIKDHKDAMRSfpyELTEGECQKVMIAIALANQPRL 179
Cdd:PRK13536 125 LDLEFTVRENLL-------VFGRYF-GMSTREIEAVipSLLEFARLESKADARVS---DLSGGMKRRLTLARALINDPQL 193
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1277489719 180 LIADEPTNSMEPTTQAQIF-RLLTRLNQNSntTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELV 247
Cdd:PRK13536 194 LILDEPTTGLDPHARHLIWeRLRSLLARGK--TILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALI 260
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
22-228 |
1.71e-09 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 57.48 E-value: 1.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNK--DNWRVTAdRMRFDDIDLL--RLSARERRKLVGhnvsMIFQE 97
Cdd:PRK14243 25 AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDliPGFRVEG-KVTFHGKNLYapDVDPVEVRRRIG----MVFQK 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 98 PqsclDPserVGRQLMQNIpAWT-----YKGRWWQRFGWRKRRAIeLLHRVgikdhKDAMRSFPYELTEGECQKVMIAIA 172
Cdd:PRK14243 100 P----NP---FPKSIYDNI-AYGaringYKGDMDELVERSLRQAA-LWDEV-----KDKLKQSGLSLSGGQQQRLCIARA 165
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1277489719 173 LANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQnsNTTILLISHDLQMLSQWADK 228
Cdd:PRK14243 166 IAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNMQQAARVSDM 219
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
3-223 |
1.84e-09 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 57.47 E-value: 1.84e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 3 LLDIRNLTieFKTGDEWVkaVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGvnkdnwRVTADR--MRFDDIDLLRLSa 80
Cdd:PRK11831 7 LVDMRGVS--FTRGNRCI--FDNISLTVPRGKITAIMGPSGIGKTTLLRLIGG------QIAPDHgeILFDGENIPAMS- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERRKLVGHNVSMIFQEPQSCLDPS--ERVGRQLMQ--NIPAwtykgrwwqrfgwrkrraiELLHR--------VGIKDH 148
Cdd:PRK11831 76 RSRLYTVRKRMSMLFQSGALFTDMNvfDNVAYPLREhtQLPA-------------------PLLHStvmmkleaVGLRGA 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1277489719 149 KDAMrsfPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDL-QMLS 223
Cdd:PRK11831 137 AKLM---PSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVpEVLS 209
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
27-250 |
1.91e-09 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 58.58 E-value: 1.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 27 SMTLTEGEIRGLVGESGSGKSLIAKAICGV-NKDNWRVTADRMRFDDIDLLRLsareRRKlvghnVSMIFQEPQscldps 105
Cdd:TIGR00958 501 TFTLHPGEVVALVGPSGSGKSTVAALLQNLyQPTGGQVLLDGVPLVQYDHHYL----HRQ-----VALVGQEPV------ 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 106 eRVGRQLMQNIPawtykgrwwqrFGWRKRRAIELLHRVGIKDHKDAMRSFPY-----------ELTEGECQKVMIAIALA 174
Cdd:TIGR00958 566 -LFSGSVRENIA-----------YGLTDTPDEEIMAAAKAANAHDFIMEFPNgydtevgekgsQLSGGQKQRIAIARALV 633
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1277489719 175 NQPRLLIADEPTNSMEpttqAQIFRLLTRLNQNSNTTILLISHDLQMLSQwADKINVLYCGQTVETAPSKELVTMP 250
Cdd:TIGR00958 634 RKPRVLILDEATSALD----AECEQLLQESRSRASRTVLLIAHRLSTVER-ADQILVLKKGSVVEMGTHKQLMEDQ 704
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
3-247 |
7.51e-09 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 56.76 E-value: 7.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 3 LLDIRNLTIeFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADrmrfddIDLLRLSARE 82
Cdd:TIGR02633 257 ILEARNLTC-WDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVF------INGKPVDIRN 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 83 RRKLVGHNVSMIFQE-PQSCLDPSERVGrqlmQNIPAWTYkgrwwQRFGWRKR-----------RAIELLHRvgikdhKD 150
Cdd:TIGR02633 330 PAQAIRAGIAMVPEDrKRHGIVPILGVG----KNITLSVL-----KSFCFKMRidaaaelqiigSAIQRLKV------KT 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 151 AMRSFPY-ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSnTTILLISHDLQMLSQWADKI 229
Cdd:TIGR02633 395 ASPFLPIgRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEG-VAIIVVSSELAEVLGLSDRV 473
|
250 260
....*....|....*....|..
gi 1277489719 230 NVLY----CGQTVETAPSKELV 247
Cdd:TIGR02633 474 LVIGegklKGDFVNHALTQEQV 495
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
25-248 |
8.79e-09 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 54.97 E-value: 8.79e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 25 RVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnwrVTADR--MRFDDIDLLRLSARERrklvghNVSMIFQEPQscL 102
Cdd:PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGF------LTPASgsLTLNGQDHTTTPPSRR------PVSMLFQENN--L 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 103 DPSERVGrqlmQNI-----PAWTYKGRwwQRfgwRKRRAIelLHRVGIKDHkdaMRSFPYELTEGECQKVMIAIALANQP 177
Cdd:PRK10771 83 FSHLTVA----QNIglglnPGLKLNAA--QR---EKLHAI--ARQMGIEDL---LARLPGQLSGGQRQRVALARCLVREQ 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1277489719 178 RLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVT 248
Cdd:PRK10771 149 PILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLS 219
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
25-247 |
1.21e-08 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 56.21 E-value: 1.21e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 25 RVSMTLTEGEIRGLVGESGSGKSLIAKAIC-----GVNKDNWR------VTADRMRF-------DDIDLLRLSARErrkl 86
Cdd:TIGR00955 43 NVSGVAKPGELLAVMGSSGAGKTTLMNALAfrspkGVKGSGSVllngmpIDAKEMRAisayvqqDDLFIPTLTVRE---- 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 87 vghnvSMIFQEpqscldpSERVGRQLmqnipawTYKGrwwqrfgwRKRRAIELLHRVGIKDHKDAMRSFPYE---LTEGE 163
Cdd:TIGR00955 119 -----HLMFQA-------HLRMPRRV-------TKKE--------KRERVDEVLQALGLRKCANTRIGVPGRvkgLSGGE 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 164 CQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAPS 243
Cdd:TIGR00955 172 RKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSP 251
|
....
gi 1277489719 244 KELV 247
Cdd:TIGR00955 252 DQAV 255
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
15-238 |
1.29e-08 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 55.01 E-value: 1.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 15 TGDEWVKAVDR-----VSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDN-----WRVTAdrMRFDDIDLLRLSarerr 84
Cdd:PRK13638 4 TSDLWFRYQDEpvlkgLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQkgavlWQGKP--LDYSKRGLLALR----- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 85 klvgHNVSMIFQepqsclDPSERVGRQLMQNIPAWTYK--GRWWQRFGWRKRRAIELLhrvgikdhkDA--MRSFPYE-L 159
Cdd:PRK13638 77 ----QQVATVFQ------DPEQQIFYTDIDSDIAFSLRnlGVPEAEITRRVDEALTLV---------DAqhFRHQPIQcL 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1277489719 160 TEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNtTILLISHDLQMLSQWADKINVLYCGQTV 238
Cdd:PRK13638 138 SHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGN-HVIISSHDIDLIYEISDAVYVLRQGQIL 215
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
5-248 |
1.53e-08 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 54.70 E-value: 1.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 5 DIRNLTieFKTGDEWVkaVDRVSMTLTEGEIRGLVGESGSGKS----LIAKAIcgvNKDNWRVTadrmrFDDIDLLRLSA 80
Cdd:COG4604 3 EIKNVS--KRYGGKVV--LDDVSLTIPKGGITALIGPNGAGKStllsMISRLL---PPDSGEVL-----VDGLDVATTPS 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERRKlvghNVSMIFQEPQ--SCLDPSERV--GRqlmqnipaWTY-KGRWWQRfGWRK-RRAIELLHRVGIKDhkdamrS 154
Cdd:COG4604 71 RELAK----RLAILRQENHinSRLTVRELVafGR--------FPYsKGRLTAE-DREIiDEAIAYLDLEDLAD------R 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 155 FPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYC 234
Cdd:COG4604 132 YLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKD 211
|
250
....*....|....
gi 1277489719 235 GQTVETAPSKELVT 248
Cdd:COG4604 212 GRVVAQGTPEEIIT 225
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
159-248 |
1.54e-08 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 54.99 E-value: 1.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTV 238
Cdd:PRK10253 144 LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV 223
|
90
....*....|
gi 1277489719 239 ETAPSKELVT 248
Cdd:PRK10253 224 AQGAPKEIVT 233
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
162-238 |
2.26e-08 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 53.32 E-value: 2.26e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1277489719 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNsNTTILLISHDL--QMLSQwADKINVLYCGQTV 238
Cdd:cd03213 115 GERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSIHQPssEIFEL-FDKLLLLSQGRVI 191
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
29-231 |
2.35e-08 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 53.95 E-value: 2.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 29 TLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvtadrmrfDDIDllrlsarerrklVGHNVSMIFQEPQSCLDPSERV 108
Cdd:cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKP-----------DEGD------------IEIELDTVSYKPQYIKADYEGT 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 109 GRQLMQNIPAWTYKGRWWQrfgwrkrraIELLHRVGIKDHKDamRSFPyELTEGECQKVMIAIALANQPRLLIADEPTNS 188
Cdd:cd03237 78 VRDLLSSITKDFYTHPYFK---------TEIAKPLQIEQILD--REVP-ELSGGELQRVAIAACLSKDADIYLLDEPSAY 145
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1277489719 189 MEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINV 231
Cdd:cd03237 146 LDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIV 188
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
1-232 |
2.74e-08 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 54.57 E-value: 2.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTIEFKTGdewvKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKdnwrVTADRMRFDDIDLLRLSA 80
Cdd:PRK09452 12 SPLVELRGISKSFDGK----EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET----PDSGRIMLDGQDITHVPA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERrklvghNVSMIFQepQSCLDPS----ERVGRQL-MQNIPAWTYKgrwwqrfgwrkRRAIELLHRVGIKDHkdAMRSf 155
Cdd:PRK09452 84 ENR------HVNTVFQ--SYALFPHmtvfENVAFGLrMQKTPAAEIT-----------PRVMEALRMVQLEEF--AQRK- 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHD----LQMlsqwADKINV 231
Cdd:PRK09452 142 PHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDqeeaLTM----SDRIVV 217
|
.
gi 1277489719 232 L 232
Cdd:PRK09452 218 M 218
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
6-218 |
3.92e-08 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 54.30 E-value: 3.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 6 IRNLTIEFktGDEWVkaVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNK-DNWRVTADR----------MRFDDid 74
Cdd:COG0488 1 LENLSKSF--GGRPL--LDDVSLSINPGDRIGLVGRNGAGKSTLLKILAGELEpDSGEVSIPKglrigylpqePPLDD-- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 75 llrlsarerRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWTYKGRWWQRF----GW-RKRRAIELLHRVGIK--D 147
Cdd:COG0488 75 ---------DLTVLDTVLDGDAELRALEAELEELEAKLAEPDEDLERLAELQEEFealgGWeAEARAEEILSGLGFPeeD 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1277489719 148 HKDAMRsfpyELTEGECQKVMIAIALANQPRLLIADEPTN-----SMEpttqaqifrLLTRLNQNSNTTILLISHD 218
Cdd:COG0488 146 LDRPVS----ELSGGWRRRVALARALLSEPDLLLLDEPTNhldleSIE---------WLEEFLKNYPGTVLVVSHD 208
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
26-236 |
5.67e-08 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 53.72 E-value: 5.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 26 VSMTLTEGEIRGLVGESGSGKSLIAKAICG-VNKDNWRVT-ADRMRFDDIDLLRLSARERRklVGHnvsmIFQEpqSCLD 103
Cdd:PRK11144 17 VNLTLPAQGITAIFGRSGAGKTSLINAISGlTRPQKGRIVlNGRVLFDAEKGICLPPEKRR--IGY----VFQD--ARLF 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 104 PSERVGRQLmqnipawtykgrwwqRFGWRKRRA------IELLhrvGIKDHkdaMRSFPYELTEGECQKVMIAIALANQP 177
Cdd:PRK11144 89 PHYKVRGNL---------------RYGMAKSMVaqfdkiVALL---GIEPL---LDRYPGSLSGGEKQRVAIGRALLTAP 147
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1277489719 178 RLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQ 236
Cdd:PRK11144 148 ELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGK 206
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
8-217 |
5.71e-08 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 52.66 E-value: 5.71e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 8 NLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGvnkdnwRVTADRMRFDDIdLLRLSARERrKLV 87
Cdd:cd03234 8 DVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISG------RVEGGGTTSGQI-LFNGQPRKP-DQF 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 88 GHNVSMIFQepQSCLDPSERVGRQL-MQNIPAWTYKGRWWQRfgwRKRRAIELLHRVGIKDHKDAMRSfpyELTEGECQK 166
Cdd:cd03234 80 QKCVAYVRQ--DDILLPGLTVRETLtYTAILRLPRKSSDAIR---KKRVEDVLLRDLALTRIGGNLVK---GISGGERRR 151
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1277489719 167 VMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQnSNTTILLISH 217
Cdd:cd03234 152 VSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIH 201
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
32-233 |
1.22e-07 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 51.98 E-value: 1.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 32 EGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDI-DLLRLSARER--RKLVGHNVSMIfQEPQscldpserv 108
Cdd:cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEIlDEFRGSELQNyfTKLLEGDVKVI-VKPQ--------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 109 grqLMQNIPAwTYKGRwwqrfgwrkrrAIELLHRVGIKDHKDAM-----------RSFPyELTEGECQKVMIAIALANQP 177
Cdd:cd03236 95 ---YVDLIPK-AVKGK-----------VGELLKKKDERGKLDELvdqlelrhvldRNID-QLSGGELQRVAIAAALARDA 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1277489719 178 RLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNtTILLISHDLQMLSQWADKINVLY 233
Cdd:cd03236 159 DFYFFDEPSSYLDIKQRLNAARLIRELAEDDN-YVLVVEHDLAVLDYLSDYIHCLY 213
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
6-231 |
1.37e-07 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 52.89 E-value: 1.37e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 6 IRNLTIEFKTGD-----------EW---VKAVDRVSMTLTEGEIR-----GLVGESGSGKSLIAKAICGVNK-DNWRVTA 65
Cdd:PRK13409 319 IRPEPIEFEERPprdeseretlvEYpdlTKKLGDFSLEVEGGEIYegeviGIVGPNGIGKTTFAKLLAGVLKpDEGEVDP 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 66 DrmrfddidlLRLSARerrklvghnvsmifqePQSCL-DPSERVGRQLMQNIPAwtYKGRWWQrfgwrkrraIELLHRVG 144
Cdd:PRK13409 399 E---------LKISYK----------------PQYIKpDYDGTVEDLLRSITDD--LGSSYYK---------SEIIKPLQ 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 145 IKDHKDAMRSfpyELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQ 224
Cdd:PRK13409 443 LERLLDKNVK---DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDY 519
|
....*..
gi 1277489719 225 WADKINV 231
Cdd:PRK13409 520 ISDRLMV 526
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
3-98 |
2.14e-07 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 51.33 E-value: 2.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 3 LLDIRNLTIEFKtGDEWVKAVDrvsMTLTEGEIRGLVGESGSGKSLIAKAICGvnKDNWRVTADRMRFDDIDLLRLSARE 82
Cdd:PRK09580 1 MLSIKDLHVSVE-DKAILRGLN---LEVRPGEVHAIMGPNGSGKSTLSATLAG--REDYEVTGGTVEFKGKDLLELSPED 74
|
90
....*....|....*.
gi 1277489719 83 RrklVGHNVSMIFQEP 98
Cdd:PRK09580 75 R---AGEGIFMAFQYP 87
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
2-232 |
2.56e-07 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 52.09 E-value: 2.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTiefkTGDEwvKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKD-------NWRVTADRMRFDDID 74
Cdd:PRK09700 264 TVFEVRNVT----SRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRaggeirlNGKDISPRSPLDAVK 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 75 LLRLSARERRKLVG--HNVSmIFQepQSCLDPSERVGRqlmqnipawtYKGRWwQRFGWRKRRAIELLHR--VGIKDHkd 150
Cdd:PRK09700 338 KGMAYITESRRDNGffPNFS-IAQ--NMAISRSLKDGG----------YKGAM-GLFHEVDEQRTAENQRelLALKCH-- 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 151 AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLnQNSNTTILLISHDLQMLSQWADKIN 230
Cdd:PRK09700 402 SVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQL-ADDGKVILMVSSELPEIITVCDRIA 480
|
..
gi 1277489719 231 VL 232
Cdd:PRK09700 481 VF 482
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
4-247 |
3.13e-07 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 51.94 E-value: 3.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTGDEwvKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAIcgvnkdnwrvtadrMRFDDID----LL--- 76
Cdd:PRK11176 342 IEFRNVTFTYPGKEV--PALRNINFKIPAGKTVALVGRSGSGKSTIANLL--------------TRFYDIDegeiLLdgh 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 77 -----RLSA-RERRKLVGHNVSMiFQEpqscldpservgrQLMQNIpAWTYKGRWwqrfgwrKRRAIELLHRVG-----I 145
Cdd:PRK11176 406 dlrdyTLASlRNQVALVSQNVHL-FND-------------TIANNI-AYARTEQY-------SREQIEEAARMAyamdfI 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 146 KDHKDAMRSFPYE----LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSntTILLISHDLQM 221
Cdd:PRK11176 464 NKMDNGLDTVIGEngvlLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNR--TSLVIAHRLST 541
|
250 260
....*....|....*....|....*.
gi 1277489719 222 LSQwADKINVLYCGQTVETAPSKELV 247
Cdd:PRK11176 542 IEK-ADEILVVEDGEIVERGTHAELL 566
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
26-248 |
6.53e-07 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 51.13 E-value: 6.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 26 VSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKdnwrVTADRMRFDDIDLLRLSARERRKLVghnvSMIFQEP------- 98
Cdd:PLN03232 1255 LSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE----LEKGRIMIDDCDVAKFGLTDLRRVL----SIIPQSPvlfsgtv 1326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 99 QSCLDP-SERVGRQLmqnipawtykgrwwqrfgWrkrraiELLHRVGIKDhkdAMRSFPYEL-----------TEGECQK 166
Cdd:PLN03232 1327 RFNIDPfSEHNDADL------------------W------EALERAHIKD---VIDRNPFGLdaevseggenfSVGQRQL 1379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 167 VMIAIALANQPRLLIADEPTNSMEPTTQAQIFRllTRLNQNSNTTILLISHDLQMLSQwADKINVLYCGQTVETAPSKEL 246
Cdd:PLN03232 1380 LSLARALLRRSKILVLDEATASVDVRTDSLIQR--TIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDSPQEL 1456
|
..
gi 1277489719 247 VT 248
Cdd:PLN03232 1457 LS 1458
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
29-231 |
7.28e-07 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 50.55 E-value: 7.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 29 TLTEGEIRGLVGESGSGKSLIAKAICGVNK-DNWRVTADrmrfddidlLRLSARerrklvghnvsmifqePQSCLDPSER 107
Cdd:COG1245 362 EIREGEVLGIVGPNGIGKTTFAKILAGVLKpDEGEVDED---------LKISYK----------------PQYISPDYDG 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 108 VGRQLMQNIPAWTYKGRWWQrfgwrkrraIELLHRVGIKDHKDAMRSfpyELTEGECQKVMIAIALANQPRLLIADEPTN 187
Cdd:COG1245 417 TVEEFLRSANTDDFGSSYYK---------TEIIKPLGLEKLLDKNVK---DLSGGELQRVAIAACLSRDADLYLLDEPSA 484
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1277489719 188 SMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINV 231
Cdd:COG1245 485 HLDVEQRLAVAKAIRRFAENRGKTAMVVDHDIYLIDYISDRLMV 528
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
2-229 |
8.22e-07 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 50.45 E-value: 8.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEFktGDEWVkaVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGvnkdnwRVTADRMRFDdidllrlsar 81
Cdd:COG0488 314 KVLELEGLSKSY--GDKTL--LDDLSLRIDRGDRIGLIGPNGAGKSTLLKLLAG------ELEPDSGTVK---------- 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 82 errklVGHNVSMIF--QEpQSCLDPSERVgrqlMQNIpawtykGRWWQrfGWRKRRAIELLHRVGikdhkdamrsFPYE- 158
Cdd:COG0488 374 -----LGETVKIGYfdQH-QEELDPDKTV----LDEL------RDGAP--GGTEQEVRGYLGRFL----------FSGDd 425
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1277489719 159 -------LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQaqifRLLTRLNQNSNTTILLISHDLQMLSQWADKI 229
Cdd:COG0488 426 afkpvgvLSGGEKARLALAKLLLSPPNVLLLDEPTNHLDIETL----EALEEALDDFPGTVLLVSHDRYFLDRVATRI 499
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
2-262 |
9.54e-07 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 50.21 E-value: 9.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNltIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICgvnkDNWRVTADRMRFDDIDLLRLSar 81
Cdd:PRK11160 337 VSLTLNN--VSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT----RAWDPQQGEILLNGQPIADYS-- 408
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 82 errklvghnvsmifqepQSCLdpservgRQLMQNIPawtykgrwwQR---FGWRKR-------------RAIELLHRVGI 145
Cdd:PRK11160 409 -----------------EAAL-------RQAISVVS---------QRvhlFSATLRdnlllaapnasdeALIEVLQQVGL 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 146 KDHKDAMRSFPYELTE-------GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSntTILLISHD 218
Cdd:PRK11160 456 EKLLEDDKGLNAWLGEggrqlsgGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNK--TVLMITHR 533
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1277489719 219 LQMLSQWaDKINVLYCGQTVETAPSKELVTMphHPYTQALIRAI 262
Cdd:PRK11160 534 LTGLEQF-DRICVMDNGQIIEQGTHQELLAQ--QGRYYQLKQRL 574
|
|
| CFTR_protein |
TIGR01271 |
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis ... |
4-279 |
1.14e-06 |
|
cystic fibrosis transmembrane conductor regulator (CFTR); The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. [Transport and binding proteins, Anions]
Pssm-ID: 273530 [Multi-domain] Cd Length: 1490 Bit Score: 50.29 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTGDEWVkaVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLsaRER 83
Cdd:TIGR01271 1218 MDVQGLTAKYTEAGRAV--LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTW--RKA 1293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 RKLVGHNVSMIFQEPQSCLDPSERvgrqlmqnipaWTYKGRWwqrfgwrkrraiELLHRVGIkdhKDAMRSFP------- 156
Cdd:TIGR01271 1294 FGVIPQKVFIFSGTFRKNLDPYEQ-----------WSDEEIW------------KVAEEVGL---KSVIEQFPdkldfvl 1347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 157 ----YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTqAQIFRllTRLNQN-SNTTILLISHDLQMLsqwadkinv 231
Cdd:TIGR01271 1348 vdggYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVT-LQIIR--KTLKQSfSNCTVILSEHRVEAL--------- 1415
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1277489719 232 LYCGQTVETAPSKelvtMPHHPYTQALIRAIPDFGSAMPHKSRLNTLP 279
Cdd:TIGR01271 1416 LECQQFLVIEGSS----VKQYDSIQKLLNETSLFKQAMSAADRLKLFP 1459
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
26-248 |
1.87e-06 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 48.39 E-value: 1.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 26 VSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTadrmrFDDIDLLRLSARE---RRKLVGHNVSMIFqepqscl 102
Cdd:PRK03695 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQ-----FAGQPLEAWSAAElarHRAYLSQQQTPPF------- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 103 dpservgrqlmqNIPAWTYkgrwWQRFGWRKRRAI-------ELLHRVGIKDHKDAMRSfpyELTEGECQKVMIAIAL-- 173
Cdd:PRK03695 83 ------------AMPVFQY----LTLHQPDKTRTEavasalnEVAEALGLDDKLGRSVN---QLSGGEWQRVRLAAVVlq 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 174 ---ANQP--RLLIADEPTNSMEPTTQAQIFRLLTRLNQnSNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVT 248
Cdd:PRK03695 144 vwpDINPagQLLLLDEPMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
158-233 |
2.05e-06 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 47.18 E-value: 2.05e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1277489719 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLY 233
Cdd:cd03222 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFE 146
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
23-251 |
2.17e-06 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 48.28 E-value: 2.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 23 VDRVSMTLTEGEIRGLVGESGSGKSLIAKAICG-----VNKDNWRVTADrmrfddidlLRLSArerrklvghnvsmifqE 97
Cdd:PRK13547 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGdltggGAPRGARVTGD---------VTLNG----------------E 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 98 PQSCLDPSERVGRQLM---QNIPAWTYKGRWWQRFGW--RKRRAIELLHRVG-IKDHKDAM-------RSFPYELTEGEC 164
Cdd:PRK13547 72 PLAAIDAPRLARLRAVlpqAAQPAFAFSAREIVLLGRypHARRAGALTHRDGeIAWQALALagatalvGRDVTTLSGGEL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 165 QKVMIAIALAN---------QPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCG 235
Cdd:PRK13547 152 ARVQFARVLAQlwpphdaaqPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADG 231
|
250
....*....|....*.
gi 1277489719 236 QTVETAPSKELVTMPH 251
Cdd:PRK13547 232 AIVAHGAPADVLTPAH 247
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
14-247 |
3.72e-06 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 47.38 E-value: 3.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 14 KTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNK-DNWRVTADRmrfddidllRLSArerrkLVGHNVS 92
Cdd:COG1134 33 RTRREEFWALKDVSFEVERGESVGIIGRNGAGKSTLLKLIAGILEpTSGRVEVNG---------RVSA-----LLELGAG 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 93 MifqepqsclDPsERVGRqlmQNIpawtykgrwwqRF-----GWRKRRAIELLHRV----GIKDHKDA--------MRSf 155
Cdd:COG1134 99 F---------HP-ELTGR---ENI-----------YLngrllGLSRKEIDEKFDEIvefaELGDFIDQpvktyssgMRA- 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 156 pyeltegecqKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLnQNSNTTILLISHDLQMLSQWADKINVLYCG 235
Cdd:COG1134 154 ----------RLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIREL-RESGRTVIFVSHSMGAVRRLCDRAIWLEKG 222
|
250
....*....|..
gi 1277489719 236 QTVETAPSKELV 247
Cdd:COG1134 223 RLVMDGDPEEVI 234
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
2-248 |
4.21e-06 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 47.49 E-value: 4.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEFktGDEWVkaVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGvnkdnwrvtadrMRFDDIDLLRL--- 78
Cdd:PRK13537 6 APIDFRNVEKRY--GDKLV--VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG------------LTHPDAGSISLcge 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 79 ----SARERRKLVGhnvsmifQEPQ-SCLDPSERVGRQLMqnipawtYKGRWwqrFGWR----KRRAIELLHRVGIKDHK 149
Cdd:PRK13537 70 pvpsRARHARQRVG-------VVPQfDNLDPDFTVRENLL-------VFGRY---FGLSaaaaRALVPPLLEFAKLENKA 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 150 DAMRSfpyELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLnQNSNTTILLISHDLQMLSQWADKI 229
Cdd:PRK13537 133 DAKVG---ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSL-LARGKTILLTTHFMEEAERLCDRL 208
|
250
....*....|....*....
gi 1277489719 230 NVLYCGQTVETAPSKELVT 248
Cdd:PRK13537 209 CVIEEGRKIAEGAPHALIE 227
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
156-232 |
9.37e-06 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 47.33 E-value: 9.37e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1277489719 156 PY--ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQwADKINVL 232
Cdd:PTZ00265 1354 PYgkSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKR-SDKIVVF 1431
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
22-237 |
9.45e-06 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 47.32 E-value: 9.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVnkdnwrvtadrmrfddidllrLSARERRKLVG-----HNVSMIFQ 96
Cdd:TIGR01257 945 AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGL---------------------LPPTSGTVLVGgkdieTNLDAVRQ 1003
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 97 EPQSCldPSERVgrqLMQNIPAWTY-------KGRWWQRFGWRKRRAIEL--LHRvgiKDHKDAMrsfpyELTEGECQKV 167
Cdd:TIGR01257 1004 SLGMC--PQHNI---LFHHLTVAEHilfyaqlKGRSWEEAQLEMEAMLEDtgLHH---KRNEEAQ-----DLSGGMQRKL 1070
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1277489719 168 MIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLtrLNQNSNTTILLISHDLQMLSQWADKINV-----LYCGQT 237
Cdd:TIGR01257 1071 SVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLL--LKYRSGRTIIMSTHHMDEADLLGDRIAIisqgrLYCSGT 1143
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
7-217 |
1.26e-05 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 47.04 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 7 RNLTIEFktGDewVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGvnkdnwrvtadrmrfddidLLRLSARERRkL 86
Cdd:NF033858 270 RGLTMRF--GD--FTAVDHVSFRIRRGEIFGFLGSNGCGKSTTMKMLTG-------------------LLPASEGEAW-L 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 87 VGHNVsmifqepqsclDPSE-----RVG--RQ---------LMQN---------IPAWTykgrwwqrfgwRKRRAIELLH 141
Cdd:NF033858 326 FGQPV-----------DAGDiatrrRVGymSQafslygeltVRQNlelharlfhLPAAE-----------IAARVAEMLE 383
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1277489719 142 RVGIKDHKDAMrsfPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISH 217
Cdd:NF033858 384 RFDLADVADAL---PDSLPLGIRQRLSLAVAVIHKPELLILDEPTSGVDPVARDMFWRLLIELSREDGVTIFISTH 456
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
4-232 |
1.53e-05 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 46.95 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTGDEwVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAI-------------------CGVNKDNWR-- 62
Cdd:PTZ00265 383 IQFKNVRFHYDTRKD-VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIerlydptegdiiindshnlKDINLKWWRsk 461
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 63 ---VTADRMRF-----DDIDLLRLSARERRKL---VGHNVSMIFQEPQSCLDPSERVGRQLMQNIPAWTYKGRWWQRFGW 131
Cdd:PTZ00265 462 igvVSQDPLLFsnsikNNIKYSLYSLKDLEALsnyYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNY 541
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 132 ---RKRRAIELLHRVGIKDHKDAMR--------SFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRL 200
Cdd:PTZ00265 542 qtiKDSEVVDVSKKVLIHDFVSALPdkyetlvgSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKT 621
|
250 260 270
....*....|....*....|....*....|..
gi 1277489719 201 LTRLNQNSNTTILLISHDLQMLsQWADKINVL 232
Cdd:PTZ00265 622 INNLKGNENRITIIIAHRLSTI-RYANTIFVL 652
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
26-253 |
1.64e-05 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 46.18 E-value: 1.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 26 VSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKdnwrVTADRMRFDDIDLLRLSARERrklvghNVSMIFQE----PQSC 101
Cdd:PRK11000 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED----ITSGDLFIGEKRMNDVPPAER------GVGMVFQSyalyPHLS 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 102 LDPSERVGRQLmqnipAWTYKGRWWQRFgwrkRRAIELLHRVGIKDHKdamrsfPYELTEGECQKVMIAIALANQPRLLI 181
Cdd:PRK11000 92 VAENMSFGLKL-----AGAKKEEINQRV----NQVAEVLQLAHLLDRK------PKALSGGQRQRVAIGRTLVAEPSVFL 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1277489719 182 ADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVtmpHHP 253
Cdd:PRK11000 157 LDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELY---HYP 225
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
2-98 |
1.88e-05 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 45.40 E-value: 1.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEFKTgDEWVKAVDrvsMTLTEGEIRGLVGESGSGKSLIAKAICGvnKDNWRVTADRMRFDDIDLLRLSAR 81
Cdd:CHL00131 6 PILEIKNLHASVNE-NEILKGLN---LSINKGEIHAIMGPNGSGKSTLSKVIAG--HPAYKILEGDILFKGESILDLEPE 79
|
90
....*....|....*..
gi 1277489719 82 ERRKLvghNVSMIFQEP 98
Cdd:CHL00131 80 ERAHL---GIFLAFQYP 93
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
4-236 |
2.24e-05 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 46.08 E-value: 2.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTGDEwVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWrvTADRMrfddIDLLRLSARER 83
Cdd:PRK13549 260 LEVRNLTAWDPVNPH-IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRW--EGEIF----IDGKPVKIRNP 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 RKLVGHNVSMIfqepqscldPSER----------VGrqlmQNIPAWTYkgrwwQRFGWRKR--RAIELLHrvgIKDHKDA 151
Cdd:PRK13549 333 QQAIAQGIAMV---------PEDRkrdgivpvmgVG----KNITLAAL-----DRFTGGSRidDAAELKT---ILESIQR 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 152 MR---SFPY----ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQnSNTTILLISHDLQMLSQ 224
Cdd:PRK13549 392 LKvktASPElaiaRLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSELPEVLG 470
|
250
....*....|..
gi 1277489719 225 WADKINVLYCGQ 236
Cdd:PRK13549 471 LSDRVLVMHEGK 482
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
159-229 |
5.69e-05 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 43.08 E-value: 5.69e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1277489719 159 LTEGECQKVMIA--IALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTIlLISHDLQMLSQwADKI 229
Cdd:cd03238 88 LSGGELQRVKLAseLFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVI-LIEHNLDVLSS-ADWI 158
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
13-60 |
5.74e-05 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 44.50 E-value: 5.74e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 1277489719 13 FKTGD-EWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDN 60
Cdd:PRK13545 29 FRSKDgEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPN 77
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
158-233 |
5.98e-05 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 44.80 E-value: 5.98e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1277489719 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSM---EPTTQAQIFRLLTRlnqnsNTTILLISHDLQMLSQWADKINVLY 233
Cdd:PRK13409 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLdirQRLNVARLIRELAE-----GKYVLVVEHDLAVLDYLADNVHIAY 285
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
135-224 |
8.97e-05 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 44.11 E-value: 8.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 135 RAIELLHRVGI--KDHKDAMRsfpyELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTqaqIFRLLTRLNQnSNTTI 212
Cdd:PRK15064 134 RAGELLLGVGIpeEQHYGLMS----EVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINT---IRWLEDVLNE-RNSTM 205
|
90
....*....|..
gi 1277489719 213 LLISHDLQMLSQ 224
Cdd:PRK15064 206 IIISHDRHFLNS 217
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
4-229 |
1.19e-04 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 42.88 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEF---KTGDEWVK-------------AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNwrvTADR 67
Cdd:PRK13546 5 VNIKNVTKEYriyRTNKERMKdalipkhknktffALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT---VGKV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 68 MRFDDIDLLRLSARERRKLVG-HNVSMifqePQSCLDPSERVGRQLMQNIPAWTYKGrwwqrfgwrkrraiELLHRvGIK 146
Cdd:PRK13546 82 DRNGEVSVIAISAGLSGQLTGiENIEF----KMLCMGFKRKEIKAMTPKIIEFSELG--------------EFIYQ-PVK 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 147 DHKDAMRSfpyeltegecqKVMIAIALANQPRLLIADEPTnSMEPTTQAQifRLLTRLNQ--NSNTTILLISHDLQMLSQ 224
Cdd:PRK13546 143 KYSSGMRA-----------KLGFSINITVNPDILVIDEAL-SVGDQTFAQ--KCLDKIYEfkEQNKTIFFVSHNLGQVRQ 208
|
....*
gi 1277489719 225 WADKI 229
Cdd:PRK13546 209 FCTKI 213
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
158-233 |
1.21e-04 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 43.62 E-value: 1.21e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1277489719 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSM---EPTTQAQIFRLLTrlnqNSNTTILLISHDLQMLSQWADKINVLY 233
Cdd:COG1245 212 ELSGGELQRVAIAAALLRDADFYFFDEPSSYLdiyQRLNVARLIRELA----EEGKYVLVVEHDLAILDYLADYVHILY 286
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
142-241 |
1.48e-04 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 43.18 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 142 RVGIKDHKDAMRSfpyeLTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNsNTTILLISHDLQM 221
Cdd:PRK10982 379 RVKTPGHRTQIGS----LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKK-DKGIIIISSEMPE 453
|
90 100
....*....|....*....|...
gi 1277489719 222 LSQWADKINVLYCGQT---VETA 241
Cdd:PRK10982 454 LLGITDRILVMSNGLVagiVDTK 476
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
4-247 |
2.12e-04 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 43.01 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTGDEWVkaVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDnwrvTADRMRFDDIDLLRLSARER 83
Cdd:TIGR00957 1285 VEFRNYCLRYREDLDLV--LRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES----AEGEIIIDGLNIAKIGLHDL 1358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 RklvgHNVSMIfqePQsclDPSERVGRQLMQNIPAWTYKGR--WWqrfgwrkrrAIELLHRvgikdhKDAMRSFP----Y 157
Cdd:TIGR00957 1359 R----FKITII---PQ---DPVLFSGSLRMNLDPFSQYSDEevWW---------ALELAHL------KTFVSALPdkldH 1413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 158 ELTE-------GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRllTRLNQNSNTTILLISHDLQMLSQWAdKIN 230
Cdd:TIGR00957 1414 ECAEggenlsvGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQS--TIRTQFEDCTVLTIAHRLNTIMDYT-RVI 1490
|
250
....*....|....*..
gi 1277489719 231 VLYCGQTVETAPSKELV 247
Cdd:TIGR00957 1491 VLDKGEVAEFGAPSNLL 1507
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
159-236 |
3.30e-04 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 42.30 E-value: 3.30e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1277489719 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSnTTILLISHDLQMLSQWADKINVLYCGQ 236
Cdd:PRK10762 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEG-LSIILVSSEMPEVLGMSDRILVMHEGR 472
|
|
| ABCC_CFTR2 |
cd03289 |
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator ... |
4-280 |
3.59e-04 |
|
ATP-binding cassette domain 2 of CFTR,subfamily C; The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Pssm-ID: 213256 [Multi-domain] Cd Length: 275 Bit Score: 41.76 E-value: 3.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTGDEWVkaVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLlrlsaRER 83
Cdd:cd03289 3 MTVKDLTAKYTEGGNAV--LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPL-----QKW 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 84 RKLVG--HNVSMIFQEP-QSCLDPServgrqlmqnipawtykGRWWQRFGWRkrraieLLHRVGIkdhKDAMRSFP---- 156
Cdd:cd03289 76 RKAFGviPQKVFIFSGTfRKNLDPY-----------------GKWSDEEIWK------VAEEVGL---KSVIEQFPgqld 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 157 -------YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRlnQNSNTTILLISHDLQMLsqwadki 229
Cdd:cd03289 130 fvlvdggCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQ--AFADCTVILSEHRIEAM------- 200
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1277489719 230 nvLYCGQTVETAPSKelvtMPHHPYTQALIRAIPDFGSAMPHKSRLNTLPG 280
Cdd:cd03289 201 --LECQRFLVIEENK----VRQYDSIQKLLNEKSHFKQAISPSDRLKLFPR 245
|
|
| COG1106 |
COG1106 |
ATPase/GTPase, AAA15 family [General function prediction only]; |
133-230 |
4.77e-04 |
|
ATPase/GTPase, AAA15 family [General function prediction only];
Pssm-ID: 440723 [Multi-domain] Cd Length: 330 Bit Score: 41.57 E-value: 4.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 133 KRRAIELLHRV--GIKD-------------------HKDAMRSFPYELtEGECQKVMIAIALA-----NQPRLLIADEPT 186
Cdd:COG1106 155 KEELLELLKIAdpGIEDieveeeeiedlverklifkHKGGNVPLPLSE-ESDGTKRLLALAGAlldalAKGGVLLIDEIE 233
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1277489719 187 NSMEPTTQAQIFRLLTRLNQNSNTTILLISHDLQMLSQWADKIN 230
Cdd:COG1106 234 ASLHPSLLRKLLKLFLDLANKNNAQLIFTTHSTELLDAFLELLR 277
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
2-229 |
6.58e-04 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 41.47 E-value: 6.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 2 PLLDIRNLTIEfktgdewvkavdrvsmtltEGEIRGLVGESGSGKSLIAKAICG-VNKDNWRVTADRmrfdDIDLLRLSA 80
Cdd:PRK11147 17 PLLDNAELHIE-------------------DNERVCLVGRNGAGKSTLMKILNGeVLLDDGRIIYEQ----DLIVARLQQ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERRKLVG--------------------HNVSMIFQEpqsclDPSERVGRQLMQNIPAWTYKGRWwqRFGWRKRRAIELL 140
Cdd:PRK11147 74 DPPRNVEGtvydfvaegieeqaeylkryHDISHLVET-----DPSEKNLNELAKLQEQLDHHNLW--QLENRINEVLAQL 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 141 HRvgikdHKDAMRSfpyELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTqaqIFRLLTRLnQNSNTTILLISHDLQ 220
Cdd:PRK11147 147 GL-----DPDAALS---SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIET---IEWLEGFL-KTFQGSIIFISHDRS 214
|
....*....
gi 1277489719 221 MLSQWADKI 229
Cdd:PRK11147 215 FIRNMATRI 223
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
136-217 |
1.04e-03 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 40.77 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 136 AIELLHRVGIkDHKDAMRSFpYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLI 215
Cdd:PRK10938 381 AQQWLDILGI-DKRTADAPF-HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFV 458
|
..
gi 1277489719 216 SH 217
Cdd:PRK10938 459 SH 460
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
4-248 |
1.19e-03 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 40.10 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 4 LDIRNLTIEFKTgdewVKAVDRVSMTLTEGEIRGLVGESGSG--KSLIAKAICG--VNKDNWRVT---ADRmrfddidll 76
Cdd:NF000106 14 VEVRGLVKHFGE----VKAVDGVDLDVREGTVLGVLGP*GAA**RGALPAHV*GpdAGRRPWRF*twcANR--------- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 77 rlsaRERRKLVGHN--VSMIFQEPQSCLDPSERVGRQL-MQNIPAwtykgrwwqrfgwrKRRAIELLHRVGIKDhkdAMR 153
Cdd:NF000106 81 ----RALRRTIG*HrpVR*GRRESFSGRENLYMIGR*LdLSRKDA--------------RARADELLERFSLTE---AAG 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 154 SFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSnTTILLISHDLQMLSQWADKINVLY 233
Cdd:NF000106 140 RAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRTRNEVWDEVRSMVRDG-ATVLLTTQYMEEAEQLAHELTVID 218
|
250
....*....|....*
gi 1277489719 234 CGQTVETAPSKELVT 248
Cdd:NF000106 219 RGRVIADGKVDELKT 233
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
1-236 |
3.07e-03 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 39.06 E-value: 3.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 1 MPLLDIRNLTiefKTGDEWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVNkdnwRVTADRMRFDDIDLLRLSA 80
Cdd:PRK11650 1 MAGLKLQAVR---KSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE----RITSGEIWIGGRVVNELEP 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 81 RERrklvghNVSMIFQepQSCLDPSERVgRQLMqnipAWTYKGRWWQRFGWRKR-----RAIEL---LHRvgiKdhkdam 152
Cdd:PRK11650 74 ADR------DIAMVFQ--NYALYPHMSV-RENM----AYGLKIRGMPKAEIEERvaeaaRILELeplLDR---K------ 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 153 rsfPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIfRL-LTRLNQNSNTTILLISHDlQM----LsqwAD 227
Cdd:PRK11650 132 ---PRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQM-RLeIQRLHRRLKTTSLYVTHD-QVeamtL---AD 203
|
....*....
gi 1277489719 228 KINVLYCGQ 236
Cdd:PRK11650 204 RVVVMNGGV 212
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
116-229 |
4.56e-03 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 38.61 E-value: 4.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 116 IPAWTYKGRwwqrfgwrkrrAIELLHRVGIKDHK--DAMRSFpyelTEGECQKVMIAIALANQPRLLIADEPTNSMEptT 193
Cdd:PRK10636 120 IDAWTIRSR-----------AASLLHGLGFSNEQleRPVSDF----SGGWRMRLNLAQALICRSDLLLLDEPTNHLD--L 182
|
90 100 110
....*....|....*....|....*....|....*.
gi 1277489719 194 QAQIFrlLTRLNQNSNTTILLISHDLQMLSQWADKI 229
Cdd:PRK10636 183 DAVIW--LEKWLKSYQGTLILISHDRDFLDPIVDKI 216
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
37-218 |
8.27e-03 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 36.20 E-value: 8.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 37 GLVGESGSGKSLIAKAICgvnkdnwrvtadrmrfddidllrlsarerRKLVGHNVSMIFqepqscLDPServgrqlmqni 116
Cdd:smart00382 6 LIVGPPGSGKTTLARALA-----------------------------RELGPPGGGVIY------IDGE----------- 39
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277489719 117 pawtykgrwwqrfgwrkrraiELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQ 196
Cdd:smart00382 40 ---------------------DILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEAL 98
|
170 180
....*....|....*....|....*..
gi 1277489719 197 IF-----RLLTRLNQNSNTTILLISHD 218
Cdd:smart00382 99 LLlleelRLLLLLKSEKNLTVILTTND 125
|
|
| |
