|
Name |
Accession |
Description |
Interval |
E-value |
| PrfA |
COG0216 |
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein ... |
4-284 |
3.50e-161 |
|
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein chain release factor RF1 is part of the Pathway/BioSystem: Translation factors
Pssm-ID: 439986 [Multi-domain] Cd Length: 356 Bit Score: 452.15 E-value: 3.50e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 4 QNLQQQLAEAK-LLSQDANPAIRKMALQEVG-------YLELALK--------NDNSssieNAILEIRAAAGGDEAEIFA 67
Cdd:COG0216 53 KKLLEDIEEAKeLLEEESDPEMREMAKEELEelearleELEEELKilllpkdpNDDK----NVILEIRAGTGGDEAALFA 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 68 AELLRMYTKYAQQQGWKVESLDTNKTSLDGIKQATVRIVGSAVYSKLAFEGGAHRVQRIPKTEKRGRIHTSVATVAVLPE 147
Cdd:COG0216 129 GDLFRMYSRYAERKGWKVEILSASEGELGGYKEVIFRISGEGVYSRLKFESGVHRVQRVPETESQGRIHTSAATVAVLPE 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 148 INKTEVEIKPEDMRVDVYRSSGHGGQSVNTTDSAVRITHISSGIVVTCQDERSQIKNRQSALMVLRAKLWQLKEQKSKQK 227
Cdd:COG0216 209 AEEVDVEINPKDLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYEAEQQKQQAE 288
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1277831908 228 EGHLRLSQIGSGERSDKIRTYNFPQDRLTDHRIGKSWSKLEKILNGDLDPIISAILQ 284
Cdd:COG0216 289 IAAERKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDEVMEGDLDELIDALIA 345
|
|
| prfA |
PRK00591 |
peptide chain release factor 1; Validated |
2-284 |
6.73e-156 |
|
peptide chain release factor 1; Validated
Pssm-ID: 234801 [Multi-domain] Cd Length: 359 Bit Score: 438.74 E-value: 6.73e-156
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 2 AIQNLQQQLAEAK-LLSQDANPAIRKMALQEV-------GYLELALK--------NDNsssiENAILEIRAAAGGDEAEI 65
Cdd:PRK00591 53 EYKQAQEDLEEAKeMLEEESDPEMREMAKEELkeleerlEELEEELKilllpkdpNDD----KNVILEIRAGTGGDEAAL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 66 FAAELLRMYTKYAQQQGWKVESLDTNKTSLDGIKQATVRIVGSAVYSKLAFEGGAHRVQRIPKTEKRGRIHTSVATVAVL 145
Cdd:PRK00591 129 FAGDLFRMYSRYAERQGWKVEILSASEGELGGYKEVIAEISGDGVYSKLKFESGVHRVQRVPATESQGRIHTSAATVAVL 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 146 PEINKTEVEIKPEDMRVDVYRSSGHGGQSVNTTDSAVRITHISSGIVVTCQDERSQIKNRQSALMVLRAKLWQLKEQKSK 225
Cdd:PRK00591 209 PEAEEVEVEINPKDLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQ 288
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1277831908 226 QKEGHLRLSQIGSGERSDKIRTYNFPQDRLTDHRIGKSWSKLEKILNGDLDPIISAILQ 284
Cdd:PRK00591 289 AEEAATRKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDEVMEGDLDELIDALIA 347
|
|
| prfA |
TIGR00019 |
peptide chain release factor 1; This model describes peptide chain release factor 1 (PrfA, ... |
4-289 |
4.34e-132 |
|
peptide chain release factor 1; This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift. [Protein synthesis, Translation factors]
Pssm-ID: 129130 [Multi-domain] Cd Length: 360 Bit Score: 378.65 E-value: 4.34e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 4 QNLQQQLAEAKLLSQDANPAIRKMALQEVGYLE-------------LALKNDNSSsiENAILEIRAAAGGDEAEIFAAEL 70
Cdd:TIGR00019 56 QQAQEDIKEAKEILEESDPEMREMAKEELEELEekieeleeqlkvlLLPKDPNDE--KNVILEIRAGTGGDEAAIFAGDL 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 71 LRMYTKYAQQQGWKVESLDTNKTSLDGIKQATVRIVGSAVYSKLAFEGGAHRVQRIPKTEKRGRIHTSVATVAVLPEINK 150
Cdd:TIGR00019 134 FRMYSRYAESKGWKVEILSANETELGGYKEVIAEIKGDGVYSRLKFESGVHRVQRVPVTESQGRIHTSAATVAVMPELEE 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 151 TEVEIKPEDMRVDVYRSSGHGGQSVNTTDSAVRITHISSGIVVTCQDERSQIKNRQSALMVLRAKLWQLKEQKSKQKEGH 230
Cdd:TIGR00019 214 VEVDINPADLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVECQDERSQHKNKDKAMKVLRARLYEAEQEKQQAAQAS 293
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1277831908 231 LRLSQIGSGERSDKIRTYNFPQDRLTDHRIGKSWSKLEKILNGDLDPIISAILQPQKKS 289
Cdd:TIGR00019 294 TRKSQVGSGDRSERIRTYNFPQNRVTDHRINLTLYKLDEVLEGDLDELIEALIAEDQAQ 352
|
|
| PCRF |
pfam03462 |
PCRF domain; This domain is found in peptide chain release factors. |
2-142 |
1.90e-55 |
|
PCRF domain; This domain is found in peptide chain release factors.
Pssm-ID: 460929 [Multi-domain] Cd Length: 192 Bit Score: 177.58 E-value: 1.90e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 2 AIQNLQQQLAEAKLLSQDanPAIRKMALQEVGYLELAL---------------KNDNSssieNAILEIRAAAGGDEAEIF 66
Cdd:pfam03462 43 EYKQALEDLEEAKELLED--PELAELAEEELEELEKRLeeleeelkllllpkdPNDDK----NAILEIRAGAGGDEAALF 116
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1277831908 67 AAELLRMYTKYAQQQGWKVESLDTNKTSLDGIKQATVRIVGSAVYSKLAFEGGAHRVQRIPKTEKRGRIHTSVATV 142
Cdd:pfam03462 117 AGDLFRMYTRYAERKGWKVEVLDYSETEAGGIKEATFEISGEGAYGRLKFESGVHRVQRVPPTESQGRIHTSFATV 192
|
|
| PCRF |
smart00937 |
This domain is found in peptide chain release factors; |
14-117 |
1.72e-32 |
|
This domain is found in peptide chain release factors;
Pssm-ID: 214923 [Multi-domain] Cd Length: 116 Bit Score: 116.02 E-value: 1.72e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 14 KLLSQDANPAIRKMALQEVGYLELALK----------------NDNSssieNAILEIRAAAGGDEAEIFAAELLRMYTKY 77
Cdd:smart00937 1 ELLEEEEDDEMRELAEEELEELEAELEeeleellkllllpkdpNDDK----NAILEIRAGAGGDEAALFAGDLLRMYLRY 76
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1277831908 78 AQQQGWKVESLDTNKTSLDGIKQATVRIVGSAVYSKLAFE 117
Cdd:smart00937 77 AERKGWKVEVLDESEGELGGIKEATLKISGEGAYGKLKFE 116
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PrfA |
COG0216 |
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein ... |
4-284 |
3.50e-161 |
|
Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Protein chain release factor RF1 is part of the Pathway/BioSystem: Translation factors
Pssm-ID: 439986 [Multi-domain] Cd Length: 356 Bit Score: 452.15 E-value: 3.50e-161
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 4 QNLQQQLAEAK-LLSQDANPAIRKMALQEVG-------YLELALK--------NDNSssieNAILEIRAAAGGDEAEIFA 67
Cdd:COG0216 53 KKLLEDIEEAKeLLEEESDPEMREMAKEELEelearleELEEELKilllpkdpNDDK----NVILEIRAGTGGDEAALFA 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 68 AELLRMYTKYAQQQGWKVESLDTNKTSLDGIKQATVRIVGSAVYSKLAFEGGAHRVQRIPKTEKRGRIHTSVATVAVLPE 147
Cdd:COG0216 129 GDLFRMYSRYAERKGWKVEILSASEGELGGYKEVIFRISGEGVYSRLKFESGVHRVQRVPETESQGRIHTSAATVAVLPE 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 148 INKTEVEIKPEDMRVDVYRSSGHGGQSVNTTDSAVRITHISSGIVVTCQDERSQIKNRQSALMVLRAKLWQLKEQKSKQK 227
Cdd:COG0216 209 AEEVDVEINPKDLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYEAEQQKQQAE 288
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1277831908 228 EGHLRLSQIGSGERSDKIRTYNFPQDRLTDHRIGKSWSKLEKILNGDLDPIISAILQ 284
Cdd:COG0216 289 IAAERKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDEVMEGDLDELIDALIA 345
|
|
| prfA |
PRK00591 |
peptide chain release factor 1; Validated |
2-284 |
6.73e-156 |
|
peptide chain release factor 1; Validated
Pssm-ID: 234801 [Multi-domain] Cd Length: 359 Bit Score: 438.74 E-value: 6.73e-156
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 2 AIQNLQQQLAEAK-LLSQDANPAIRKMALQEV-------GYLELALK--------NDNsssiENAILEIRAAAGGDEAEI 65
Cdd:PRK00591 53 EYKQAQEDLEEAKeMLEEESDPEMREMAKEELkeleerlEELEEELKilllpkdpNDD----KNVILEIRAGTGGDEAAL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 66 FAAELLRMYTKYAQQQGWKVESLDTNKTSLDGIKQATVRIVGSAVYSKLAFEGGAHRVQRIPKTEKRGRIHTSVATVAVL 145
Cdd:PRK00591 129 FAGDLFRMYSRYAERQGWKVEILSASEGELGGYKEVIAEISGDGVYSKLKFESGVHRVQRVPATESQGRIHTSAATVAVL 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 146 PEINKTEVEIKPEDMRVDVYRSSGHGGQSVNTTDSAVRITHISSGIVVTCQDERSQIKNRQSALMVLRAKLWQLKEQKSK 225
Cdd:PRK00591 209 PEAEEVEVEINPKDLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQ 288
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1277831908 226 QKEGHLRLSQIGSGERSDKIRTYNFPQDRLTDHRIGKSWSKLEKILNGDLDPIISAILQ 284
Cdd:PRK00591 289 AEEAATRKSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDEVMEGDLDELIDALIA 347
|
|
| prfA |
TIGR00019 |
peptide chain release factor 1; This model describes peptide chain release factor 1 (PrfA, ... |
4-289 |
4.34e-132 |
|
peptide chain release factor 1; This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift. [Protein synthesis, Translation factors]
Pssm-ID: 129130 [Multi-domain] Cd Length: 360 Bit Score: 378.65 E-value: 4.34e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 4 QNLQQQLAEAKLLSQDANPAIRKMALQEVGYLE-------------LALKNDNSSsiENAILEIRAAAGGDEAEIFAAEL 70
Cdd:TIGR00019 56 QQAQEDIKEAKEILEESDPEMREMAKEELEELEekieeleeqlkvlLLPKDPNDE--KNVILEIRAGTGGDEAAIFAGDL 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 71 LRMYTKYAQQQGWKVESLDTNKTSLDGIKQATVRIVGSAVYSKLAFEGGAHRVQRIPKTEKRGRIHTSVATVAVLPEINK 150
Cdd:TIGR00019 134 FRMYSRYAESKGWKVEILSANETELGGYKEVIAEIKGDGVYSRLKFESGVHRVQRVPVTESQGRIHTSAATVAVMPELEE 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 151 TEVEIKPEDMRVDVYRSSGHGGQSVNTTDSAVRITHISSGIVVTCQDERSQIKNRQSALMVLRAKLWQLKEQKSKQKEGH 230
Cdd:TIGR00019 214 VEVDINPADLRIDTFRSSGAGGQHVNTTDSAVRITHLPTGIVVECQDERSQHKNKDKAMKVLRARLYEAEQEKQQAAQAS 293
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1277831908 231 LRLSQIGSGERSDKIRTYNFPQDRLTDHRIGKSWSKLEKILNGDLDPIISAILQPQKKS 289
Cdd:TIGR00019 294 TRKSQVGSGDRSERIRTYNFPQNRVTDHRINLTLYKLDEVLEGDLDELIEALIAEDQAQ 352
|
|
| prfB |
TIGR00020 |
peptide chain release factor 2; In many but not all taxa, there is a conserved real ... |
35-283 |
6.03e-78 |
|
peptide chain release factor 2; In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc. [Protein synthesis, Translation factors]
Pssm-ID: 272858 [Multi-domain] Cd Length: 364 Bit Score: 240.83 E-value: 6.03e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 35 LELALKNDNSSSieNAILEIRAAAGGDEAEIFAAELLRMYTKYAQQQGWKVESLDTNKTSLDGIKQATVRIVGSAVYSKL 114
Cdd:TIGR00020 113 LRTMLSGEYDAN--NAYLTIQAGAGGTEAQDWASMLYRMYLRWAERRGFKVEIIDYSEGEEAGIKSVTILIKGPYAYGYL 190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 115 AFEGGAHRVQRIPKTEKRGRIHTSVATVAVLPEIN-KTEVEIKPEDMRVDVYRSSGHGGQSVNTTDSAVRITHISSGIVV 193
Cdd:TIGR00020 191 KSEQGVHRLVRISPFDANGRRHTSFASVFVMPEVDdDIDIEIKPEDLRIDTYRASGAGGQHVNKTDSAVRITHIPTGIVV 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 194 TCQDERSQIKNRQSALMVLRAKLWQLK--EQKSKQKEGHLRLSQIGSGersDKIRTYNF-PQDRLTDHRIGKSWSKLEKI 270
Cdd:TIGR00020 271 QCQNDRSQHKNKDSAMKVLKAKLYELEmeKEQAEKDAKEGEKSEIGWG---SQIRSYVLhPYSMVKDLRTGYETGNVQAV 347
|
250
....*....|...
gi 1277831908 271 LNGDLDPIISAIL 283
Cdd:TIGR00020 348 LDGDIDQFIEAYL 360
|
|
| PRK08787 |
PRK08787 |
peptide chain release factor 2; Provisional |
49-284 |
3.53e-67 |
|
peptide chain release factor 2; Provisional
Pssm-ID: 136970 [Multi-domain] Cd Length: 313 Bit Score: 211.83 E-value: 3.53e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 49 NAILEIRAAAGGDEAEIFAAELLRMYTKYAQQQGWKVESLDTNKTSLDGIKQATVRIVGSAVYSKLAFEGGAHRVQRIPK 128
Cdd:PRK08787 66 NAFVDIQAGAGGTEAQDWAEILLRMYLRWAESRGWKTELMEVSGGEVAGIKSATVRIEGEYAYGWLKTEIGVHRLVRKSP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 129 TEKRGRIHTSVATVAVLPEINKT-EVEIKPEDMRVDVYRSSGHGGQSVNTTDSAVRITHISSGIVVTCQDERSQIKNRQS 207
Cdd:PRK08787 146 FDSDNRRHTSFTSVFVSPEVDDNiEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQNRDN 225
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1277831908 208 ALMVLRAKLWQLKEQKSKQKEGHLRL--SQIGSGErsdKIRTYNFPQDRLTDHRIGKSWSKLEKILNGDLDPIISAILQ 284
Cdd:PRK08787 226 AMKMLAAKLYELEVQKRNAEKDALEAtkSDIGWGS---QIRNYVLDQSRIKDLRTGIERSDTQKVLDGDLDEFVEASLK 301
|
|
| PRK05589 |
PRK05589 |
peptide chain release factor 2; Provisional |
49-287 |
5.45e-66 |
|
peptide chain release factor 2; Provisional
Pssm-ID: 235520 [Multi-domain] Cd Length: 325 Bit Score: 208.89 E-value: 5.45e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 49 NAILEIRAAAGGDEAEIFAAELLRMYTKYAQQQGWKVESLDTNKTSLDGIKQATVRIVGSAVYSKLAFEGGAHRVQRIPK 128
Cdd:PRK05589 86 NAILTLHSGVGGTDAQDWTEMLLRMYTRWAEKKGYKVEIIDLLEGDEAGIKSVTLKITGEFAYGYLKAEKGIHRLVRISP 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 129 TEKRGRIHTSVATVAVLPEINKT-EVEIKPEDMRVDVYRSSGHGGQSVNTTDSAVRITHISSGIVVTCQDERSQIKNRQS 207
Cdd:PRK05589 166 FNANGKRQTSFASVEVLPELTDDqDIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNERSQHSNKET 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 208 ALMVLRAKLWQLKEQKSKQKEGHL--RLSQIGSGersDKIRTYNF-PQDRLTDHRIGKSWSKLEKILNGDLDPIISAILQ 284
Cdd:PRK05589 246 AMKMLKSKLVELKERAHKEKIEDLtgELKDMGWG---SQIRSYVFhPYNLVKDHRTGVETSNVDSVMDGDIDNFITQYLK 322
|
...
gi 1277831908 285 PQK 287
Cdd:PRK05589 323 GNF 325
|
|
| PRK06746 |
PRK06746 |
peptide chain release factor 2; Provisional |
26-286 |
4.28e-62 |
|
peptide chain release factor 2; Provisional
Pssm-ID: 75726 [Multi-domain] Cd Length: 326 Bit Score: 199.19 E-value: 4.28e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 26 KMALQEVGYLELALKNDNSSSIENAILEIRAAAGGDEAEIFAAELLRMYTKYAQQQGWKVESLDTNKTSLDGIKQATVRI 105
Cdd:PRK06746 64 KGLIQEMNEYELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLI 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 106 VGSAVYSKLAFEGGAHRVQRIPKTEKRGRIHTSVATVAVLPEIN-KTEVEIKPEDMRVDVYRSSGHGGQSVNTTDSAVRI 184
Cdd:PRK06746 144 KGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSCEVVPEFNdEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRI 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 185 THISSGIVVTCQDERSQIKNRQSALMVLRAKLWQ--LKEQKSKQKEGHLRLSQIGSGErsdKIRTYNF-PQDRLTDHRIG 261
Cdd:PRK06746 224 THTPTNTVVTCQSERSQIKNREHAMKMLKAKLYQkkLEEQQAELDEIRGEQKEIGWGS---QIRSYVFhPYSLVKDHRTN 300
|
250 260
....*....|....*....|....*
gi 1277831908 262 KSWSKLEKILNGDLDPIISAILQPQ 286
Cdd:PRK06746 301 TEVGNVQAVMDGEIDPFIDAYLRSR 325
|
|
| PRK07342 |
PRK07342 |
peptide chain release factor 2; Provisional |
52-283 |
1.91e-60 |
|
peptide chain release factor 2; Provisional
Pssm-ID: 235997 [Multi-domain] Cd Length: 339 Bit Score: 195.10 E-value: 1.91e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 52 LEIRAAAGGDEAEIFAAELLRMYTKYAQQQGWKVESLDTNKTSLDGIKQATVRIVGSAVYSKLAFEGGAHRVQRIPKTEK 131
Cdd:PRK07342 92 LEVHAGAGGTESQDWASMLLRMYTRWAERQGRKVEVLEVHDGEEAGIKSATILVKGHNAYGWLKTESGVHRLVRISPYDS 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 132 RGRIHTSVATVAVLPEINKT-EVEIKPEDMRVDVYRSSGHGGQSVNTTDSAVRITHISSGIVVTCQDERSQIKNRQSALM 210
Cdd:PRK07342 172 NARRHTSFASIWVYPVIDDNiEVDVNESDVRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQCQQERSQHKNRAKAWS 251
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1277831908 211 VLRAKLWQLKEQKSKQKEGHLRLSQ--IGSGErsdKIRTYNF-PQDRLTDHRIGKSWSKLEKILNGDLDPIISAIL 283
Cdd:PRK07342 252 MLRARLYEEELKKREEATNAAAASKtdIGWGH---QIRSYVLqPYQLVKDLRTGVESTNPQDVLDGDLNEFMEAAL 324
|
|
| PCRF |
pfam03462 |
PCRF domain; This domain is found in peptide chain release factors. |
2-142 |
1.90e-55 |
|
PCRF domain; This domain is found in peptide chain release factors.
Pssm-ID: 460929 [Multi-domain] Cd Length: 192 Bit Score: 177.58 E-value: 1.90e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 2 AIQNLQQQLAEAKLLSQDanPAIRKMALQEVGYLELAL---------------KNDNSssieNAILEIRAAAGGDEAEIF 66
Cdd:pfam03462 43 EYKQALEDLEEAKELLED--PELAELAEEELEELEKRLeeleeelkllllpkdPNDDK----NAILEIRAGAGGDEAALF 116
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1277831908 67 AAELLRMYTKYAQQQGWKVESLDTNKTSLDGIKQATVRIVGSAVYSKLAFEGGAHRVQRIPKTEKRGRIHTSVATV 142
Cdd:pfam03462 117 AGDLFRMYTRYAERKGWKVEVLDYSETEAGGIKEATFEISGEGAYGRLKFESGVHRVQRVPPTESQGRIHTSFATV 192
|
|
| RF-1 |
pfam00472 |
RF-1 domain; This domain is found in peptide chain release factors such as RF-1 and RF-2, and ... |
152-259 |
8.20e-55 |
|
RF-1 domain; This domain is found in peptide chain release factors such as RF-1 and RF-2, and a number of smaller proteins of unknown function. This domain contains the peptidyl-tRNA hydrolase activity. The domain contains a highly conserved motif GGQ, where the glutamine is thought to coordinate the water that mediates the hydrolysis.
Pssm-ID: 459823 [Multi-domain] Cd Length: 111 Bit Score: 172.99 E-value: 8.20e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 152 EVEIKPEDMRVDVYRSSGHGGQSVNTTDSAVRITHISSGIVVTCQDERSQIKNRQSALMVLRAKLWQLKEQKSKQKEGHL 231
Cdd:pfam00472 4 EIEIDPKDLRIDTFRSSGAGGQHVNKTDSAVRLTHIPTGIVVKCQDERSQHQNREKALKRLRARLYELEEEKEEEKKRRI 83
|
90 100
....*....|....*....|....*....
gi 1277831908 232 RlSQIGSGERSDKIRTYNF-PQDRLTDHR 259
Cdd:pfam00472 84 K-SQVGSGDRSEQIRTYNFkPQSRVKDHR 111
|
|
| PCRF |
smart00937 |
This domain is found in peptide chain release factors; |
14-117 |
1.72e-32 |
|
This domain is found in peptide chain release factors;
Pssm-ID: 214923 [Multi-domain] Cd Length: 116 Bit Score: 116.02 E-value: 1.72e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 14 KLLSQDANPAIRKMALQEVGYLELALK----------------NDNSssieNAILEIRAAAGGDEAEIFAAELLRMYTKY 77
Cdd:smart00937 1 ELLEEEEDDEMRELAEEELEELEAELEeeleellkllllpkdpNDDK----NAILEIRAGAGGDEAALFAGDLLRMYLRY 76
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1277831908 78 AQQQGWKVESLDTNKTSLDGIKQATVRIVGSAVYSKLAFE 117
Cdd:smart00937 77 AERKGWKVEVLDESEGELGGIKEATLKISGEGAYGKLKFE 116
|
|
| PrfB |
COG1186 |
Protein chain release factor PrfB [Translation, ribosomal structure and biogenesis]; Protein ... |
152-227 |
3.30e-29 |
|
Protein chain release factor PrfB [Translation, ribosomal structure and biogenesis]; Protein chain release factor PrfB is part of the Pathway/BioSystem: Translation factors
Pssm-ID: 440799 [Multi-domain] Cd Length: 140 Bit Score: 107.91 E-value: 3.30e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 152 EVEIKPEDMRVDVYRSSGHGGQSVNTTDSAVRITH------------ISSGIVVTCQDERSQIKNRQSALMVLRAKLWQL 219
Cdd:COG1186 20 EIEIPESDLRIDTYRASGAGGQNVNKVSSAVRLTHdiassslpdsrlTPGGIVVKAQEERSQHQNREDALKRLKALLYEA 99
|
....*...
gi 1277831908 220 KEQKSKQK 227
Cdd:COG1186 100 ELEPKERR 107
|
|
| release_prfH |
TIGR03072 |
putative peptide chain release factor H; Members of this protein family are bacterial proteins ... |
52-248 |
3.49e-24 |
|
putative peptide chain release factor H; Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon. [Protein synthesis, Translation factors]
Pssm-ID: 213768 Cd Length: 200 Bit Score: 96.76 E-value: 3.49e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 52 LEIRAAAGGDEAEIFAAELLRMYTKYAQQQGWKVESLDTNKTSLDG-IKQATVRIVG--SAVYSKlAFEGGAHRVQRIP- 127
Cdd:TIGR03072 3 LQLSSAQGPAECCLAVAKALERLTREAAARGVRVEVLEQEPGEVPGtLRSALVSLDGeaAAALAD-RWEGTLLWICPSPy 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1277831908 128 -KTEKRGRIHTSVATVAVLPEINkteveikPEDMRVDVYRSSGHGGQSVNTTDSAVRITHISSGIVVTCQDERSQIKNRQ 206
Cdd:TIGR03072 82 rPHHRRKNWFIGVQRFSASEEAT-------EDEIRFETLRSSGPGGQHVNKTESAVRATHLASGISVKVQSERSQHANKR 154
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1277831908 207 SALMVLRAKLWQLKEQKSKQKEGHLRLSQIgSGERSDKIRTY 248
Cdd:TIGR03072 155 LATLLLAVRLADLQQEQAAALRAERRTAHH-QIERGNPVRVF 195
|
|
| PRK09256 |
PRK09256 |
aminoacyl-tRNA hydrolase; |
166-214 |
3.29e-07 |
|
aminoacyl-tRNA hydrolase;
Pssm-ID: 181730 [Multi-domain] Cd Length: 138 Bit Score: 48.61 E-value: 3.29e-07
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1277831908 166 RSSGHGGQSVNTTDSAV-------------------------RIThiSSG-IVVTCQDERSQIKNRQSALMVLRA 214
Cdd:PRK09256 21 RASGPGGQNVNKVSTAVelrfdiaasslpefykerllalaghRIT--KDGvIVIKAQEFRSQERNREDALERLVA 93
|
|
| |
