NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1319871776|gb|PLL53045|]
View 

hypothetical protein CWN04_29060, partial [Klebsiella michiganensis]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF463 super family cl01193
YcjX-like family, DUF463; This family represents a group of uncharacterized proteins including ...
 1-95 4.76e-45

YcjX-like family, DUF463; This family represents a group of uncharacterized proteins including a bacterial stress protein YcjX. The crystal structure of YcjX from Shewanella oneidensis has now been solved, and shows it to be a Ras-like GTP-binding protein. However, YcjX utilizes a non-canonical switch 2' motif not found in any other G protein.


The actual alignment was detected with superfamily member COG3106:

Pssm-ID: 470113  Cd Length: 467  Bit Score: 150.34  E-value: 4.76e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319871776   1 SMDCLGLASIQATQSGLIEVNGEKIPALRGHRLSDGQPLTVYPGEVPARLPGQVFWEQQGFQFENFRPQV--MDVDKPLP 78
Cdd:COG3106   371 EVDTMALAAVRATREGTVEHGGETLPAIRGTPLAGGEEVALFPGEVPERLPDADFWQEQGFRFPRFRPPPleLDAGLPLP 450

                          90
                  ....*....|....*..
gi 1319871776  79 HIRLDAALEFLIGDKLR 95
Cdd:COG3106   451 HIRLDRALQFLLGDKLA 467
 
Name Accession Description Interval E-value
YcjX COG3106
Ras-like GTP-binding stress-induced protein YcjX, DUF463 family [Signal transduction ...
 1-95 4.76e-45

Ras-like GTP-binding stress-induced protein YcjX, DUF463 family [Signal transduction mechanisms];


Pssm-ID: 442340  Cd Length: 467  Bit Score: 150.34  E-value: 4.76e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319871776   1 SMDCLGLASIQATQSGLIEVNGEKIPALRGHRLSDGQPLTVYPGEVPARLPGQVFWEQQGFQFENFRPQV--MDVDKPLP 78
Cdd:COG3106   371 EVDTMALAAVRATREGTVEHGGETLPAIRGTPLAGGEEVALFPGEVPERLPDADFWQEQGFRFPRFRPPPleLDAGLPLP 450

                          90
                  ....*....|....*..
gi 1319871776  79 HIRLDAALEFLIGDKLR 95
Cdd:COG3106   451 HIRLDRALQFLLGDKLA 467
DUF463 pfam04317
YcjX-like family, DUF463; This family represents a group of uncharacterized proteins including ...
 1-94 3.53e-40

YcjX-like family, DUF463; This family represents a group of uncharacterized proteins including a bacterial stress protein YcjX. The crystal structure of YcjX from Shewanella oneidensis has now been solved, and shows it to be a Ras-like GTP-binding protein. However, YcjX utilizes a non-canonical switch 2' motif not found in any other G protein.


Pssm-ID: 427862  Cd Length: 443  Bit Score: 137.28  E-value: 3.53e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319871776   1 SMDCLGLASIQATQSGLIEVNGEKIPALRGHRLSDGQPLTVYPGEVPARLPGQVFWEQQGFQFENFRPQV--MDVDKPLP 78
Cdd:pfam04317 348 EVETMALAAVRATREGMVTHGGQTLPAIRGTPLDGGREVALFPGELPEDLPDALFWQAQGFRFPRFRPPRppLGSDLPLP 427

                          90
                  ....*....|....*.
gi 1319871776  79 HIRLDAALEFLIGDKL 94
Cdd:pfam04317 428 HIRLDRALQFLLGDKL 443
 
Name Accession Description Interval E-value
YcjX COG3106
Ras-like GTP-binding stress-induced protein YcjX, DUF463 family [Signal transduction ...
 1-95 4.76e-45

Ras-like GTP-binding stress-induced protein YcjX, DUF463 family [Signal transduction mechanisms];


Pssm-ID: 442340  Cd Length: 467  Bit Score: 150.34  E-value: 4.76e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319871776   1 SMDCLGLASIQATQSGLIEVNGEKIPALRGHRLSDGQPLTVYPGEVPARLPGQVFWEQQGFQFENFRPQV--MDVDKPLP 78
Cdd:COG3106   371 EVDTMALAAVRATREGTVEHGGETLPAIRGTPLAGGEEVALFPGEVPERLPDADFWQEQGFRFPRFRPPPleLDAGLPLP 450

                          90
                  ....*....|....*..
gi 1319871776  79 HIRLDAALEFLIGDKLR 95
Cdd:COG3106   451 HIRLDRALQFLLGDKLA 467
DUF463 pfam04317
YcjX-like family, DUF463; This family represents a group of uncharacterized proteins including ...
 1-94 3.53e-40

YcjX-like family, DUF463; This family represents a group of uncharacterized proteins including a bacterial stress protein YcjX. The crystal structure of YcjX from Shewanella oneidensis has now been solved, and shows it to be a Ras-like GTP-binding protein. However, YcjX utilizes a non-canonical switch 2' motif not found in any other G protein.


Pssm-ID: 427862  Cd Length: 443  Bit Score: 137.28  E-value: 3.53e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319871776   1 SMDCLGLASIQATQSGLIEVNGEKIPALRGHRLSDGQPLTVYPGEVPARLPGQVFWEQQGFQFENFRPQV--MDVDKPLP 78
Cdd:pfam04317 348 EVETMALAAVRATREGMVTHGGQTLPAIRGTPLDGGREVALFPGELPEDLPDALFWQAQGFRFPRFRPPRppLGSDLPLP 427

                          90
                  ....*....|....*.
gi 1319871776  79 HIRLDAALEFLIGDKL 94
Cdd:pfam04317 428 HIRLDRALQFLLGDKL 443
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH