|
Name |
Accession |
Description |
Interval |
E-value |
| T4SS-DNA_transf |
pfam02534 |
Type IV secretory system Conjugative DNA transfer; These proteins contain a P-loop and ... |
100-577 |
7.08e-118 |
|
Type IV secretory system Conjugative DNA transfer; These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. The C-terminus of this domain interacts with the relaxosome component TraM via the latter's tetramerization domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore. The family contains a number of different DNA transfer proteins.
Pssm-ID: 367119 [Multi-domain] Cd Length: 468 Bit Score: 358.26 E-value: 7.08e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 100 RFATDADVRKSKQVTWGNDKKGGVIIGR----YKGQLlRYTQPDF--VSMGAGTRAGKGAGIVIPNLLDFEFSMVVLDPK 173
Cdd:pfam02534 1 RWANDGDLESAGLLTRENTIIGDVYTKDpdawYAGGL-LNTDGDFshVLVFAGTGSGKGVGVVIPNLLVWKGSIVVLDPK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 174 QECYNITSRYRQKTlGHKVFLLDPFSSKTHG-FNPLFYVDLDHEKGAGYLLNLSTTLWPVAGLaGAEAHFNSGAGRVFIA 252
Cdd:pfam02534 80 GELWELTSGIREKQ-GRKVFVLEPFNPKTSDrYNPLDYIDRGSEQETEDILKVASLIMPGKGG-GRDDFFNNTARQLLVA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 253 YtellhfamkydrkYLEAVGVKPLFSIGTVLDLYYNVNQEElltDREGWIEKAKndndRYLITD------ALNKIKKLFE 326
Cdd:pfam02534 158 L-------------IALVLRSKPTRTIGQTLRFVRNMLSEP---NLIENKELAV----LLNELDgshhdrVGDNLRFYVN 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 327 SEGEAKSSLEETFQKKLNLFTLPLFRKATDRNDFDLRLLRKEKMTVYLGISADDAKIADEFLNLFFNFAIDVNMRENPDF 406
Cdd:pfam02534 218 KTDETRSSVIGTAVSELALYADPEVRNATSGSDFDLRDLRRDKTSVYVILNPKDLTVVSPLLRVFFQMVVELLYLKLPNG 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 407 VPENKHdVLFLLDEFPAIGAMHYIKKASGFIAGFKLKLLTIYQNLSQLIEIYGVYGAKTLMSMHPCRVIYAVSEKDD-AD 485
Cdd:pfam02534 298 DGRPKE-VLFLLDEFPSLGKLEILEEALATIRGYGIRLTTICQSISQLKETYGGEGAKSILSNHAVVICFAASNDEEtAK 376
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 486 EVSAKLGYTTLKAKGKSKSRNKGGTSQGESENDAQRALVLPQELGTLKFEEQFVILKGEHPIKCHKAMYYNDDFFMDKLI 565
Cdd:pfam02534 377 YISKLLGKTTVEVESSSKSTDAKGSSRSRSISEVQRPLLTPDEVLRMPDDEQIVITKGQPPIKCKKALYFKDEDFKAELN 456
|
490
....*....|..
gi 1319952599 566 SLSPYLQGVKAG 577
Cdd:pfam02534 457 KPTALTASVKLG 468
|
|
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
145-557 |
2.07e-87 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 277.25 E-value: 2.07e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 145 AGTRAGKGAGIVIPNL--LDFEFSMVVLDPKQECYNITSRYRQKtLGHKVFLLDPF-SSKTHGFNPLfyvdlDHEKGAGY 221
Cdd:COG3505 6 GPTGSGKTVGLVIPNLtqLARGESVVVTDPKGDLAELTAGFRRR-AGYDVYVFDPFdPERSHRWNPL-----DEIRDPAD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 222 LLNLSTTLWPVA-GLAGAEAHFNSGAGRVFIAyteLLHFAMKYDRKyleavgvkplfSIGTVLDLyynvnqeeLLTDREG 300
Cdd:COG3505 80 AQELAEALIPALgGGGGGDPFWREAARALLAA---LILALAEEGRR-----------TLADVYRL--------LSEPEEE 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 301 WIE--KAKNDNDRYLITDALNKIkklFESEGEAKSSLEETFQKKLNLFTLPLFRKATDRNDFDLRLLRKEKMTVYLGISA 378
Cdd:COG3505 138 LREllEALPESPHPPVADTLAAF---LNAAEKTRSSVLSTLASALELLSDPEVAALTSGSDFDLRDLIREKGTLYLVLPP 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 379 DDAKIADEFLNLFFNFAIDVNMREnPDFVPENKHDVLFLLDEFPAIGAMHYIKKASGFIAGFKLKLLTIYQNLSQLIEIY 458
Cdd:COG3505 215 DDLSTLAPLLRLLLSQLIRALLRR-AERSGRLPRPVLLLLDEFANLGRLPSLETLLATGRGYGIRLVLILQSLAQLEAIY 293
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 459 GVYGAKTLMSMHPCRVIYAVSEKDDADEVSAKLGYTTLKAkgKSKSRNKGGTSQGESEndAQRALVLPQELGTLKFEEQF 538
Cdd:COG3505 294 GEEGAETILGNCGTKIFLGVNDPETAEYLSELLGKRTVER--RSESRSRGSRSRSRSE--QERPLLTPDELRRLPDGEAI 369
|
410
....*....|....*....
gi 1319952599 539 VILKGEHPIKCHKAMYYND 557
Cdd:COG3505 370 VLVRGGPPIRAKKIRYYKD 388
|
|
| PRK13897 |
PRK13897 |
type IV secretion system component VirD4; Provisional |
90-565 |
2.92e-47 |
|
type IV secretion system component VirD4; Provisional
Pssm-ID: 237549 [Multi-domain] Cd Length: 606 Bit Score: 175.37 E-value: 2.92e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 90 KPKTALFGEARFATDADVRKS-----KQVTWGNDKKGGVIIGRYKGQLLrytqpdFvsmgAGTRAGKGAGIVIPNLLDFE 164
Cdd:PRK13897 115 KKKEKVHGDARWASESDIRKAglrskKGMLLGKDKGGYFVADGFQHALL------F----APTGSGKGVGFVIPNLLFWE 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 165 FSMVVLDPKQECYNITSRYRQKtLGHKVFLLDPFS--SKTHGFNPLFYVdldhEKGAGYLLNlstTLWPVAGLAGAEAHF 242
Cdd:PRK13897 185 DSVVVHDIKLENYELTSGWREK-QGQKVFVWEPANpdGISHCYNPLDWV----STKPGQMVD---DVQKIANLIMPEQDF 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 243 -NSGAGRVFIAYTellhfamkydrKYLEAVGVKpLFSIGTVL------DLYYNVnqeELLTDREGWIekakndndryLIT 315
Cdd:PRK13897 257 wNNEARSLFLGVV-----------LYLLADPEK-VKSFGEVVrtmrsdDVVYNL---AVVLDTLGKV----------IHP 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 316 DALNKIKKLFESEGEAKSSLEETFQKKLNLFTLPLFRKATDRNDFDLRLLRKEKMTVYLGISADDAKIADEFLNLFFNFA 395
Cdd:PRK13897 312 VAYMNIAAFLQKADKERSGVISTMNSSLELWANPLIDTATASSDFNIQEFKKKKTTVYVGLTPDNLTRLQPLMQVFYQQA 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 396 IDVNMRENPDfvPENKHDVLFLLDEFPAIGAMHYIKKASGFIAGFKLKLLTIYQNLSQLIEIYGVYGAKTLMSMHPCRVI 475
Cdd:PRK13897 392 TEFLCRKLPD--KDEPYGVLFLMDEFPTLGKMEQFKTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRIT 469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 476 YAVSEKDDADEVSAKLGYTTLKAKGKSKSR----NKGGTSQGESEndAQRALVLPQELGTLKFEEQFVILKGEHPIKCHK 551
Cdd:PRK13897 470 FAANNIETANLISQLVGNKTVEQESLNKPKfldlNPASRSLHISE--VQRALLLPQEVIMLPRDEQILLIESTYPIKSKK 547
|
490
....*....|....
gi 1319952599 552 AMYYNDDFFMDKLI 565
Cdd:PRK13897 548 IKYYEDKFFTSRLL 561
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
369-478 |
1.43e-13 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 68.01 E-value: 1.43e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 369 KMTVYLGISaDDAKIADEFLNLFFNFAIDVNMRENPDFVPENKHDVLFLLDEFPAIGAMHYIKKASGFIAGFKLKLLTIY 448
Cdd:cd01127 36 KGELFLVIP-DRDDSFAALRALFFNQLFRALTELASLSPGRLPRRVWFILDEFANLGRIPNLPNLLATGRKRGISVVLIL 114
|
90 100 110
....*....|....*....|....*....|
gi 1319952599 449 QNLSQLIEIYGVYGAKTLMSMHPCRVIYAV 478
Cdd:cd01127 115 QSLAQLEAVYGKDGAQTILGNCNTKLYLGT 144
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| T4SS-DNA_transf |
pfam02534 |
Type IV secretory system Conjugative DNA transfer; These proteins contain a P-loop and ... |
100-577 |
7.08e-118 |
|
Type IV secretory system Conjugative DNA transfer; These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. The C-terminus of this domain interacts with the relaxosome component TraM via the latter's tetramerization domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore. The family contains a number of different DNA transfer proteins.
Pssm-ID: 367119 [Multi-domain] Cd Length: 468 Bit Score: 358.26 E-value: 7.08e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 100 RFATDADVRKSKQVTWGNDKKGGVIIGR----YKGQLlRYTQPDF--VSMGAGTRAGKGAGIVIPNLLDFEFSMVVLDPK 173
Cdd:pfam02534 1 RWANDGDLESAGLLTRENTIIGDVYTKDpdawYAGGL-LNTDGDFshVLVFAGTGSGKGVGVVIPNLLVWKGSIVVLDPK 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 174 QECYNITSRYRQKTlGHKVFLLDPFSSKTHG-FNPLFYVDLDHEKGAGYLLNLSTTLWPVAGLaGAEAHFNSGAGRVFIA 252
Cdd:pfam02534 80 GELWELTSGIREKQ-GRKVFVLEPFNPKTSDrYNPLDYIDRGSEQETEDILKVASLIMPGKGG-GRDDFFNNTARQLLVA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 253 YtellhfamkydrkYLEAVGVKPLFSIGTVLDLYYNVNQEElltDREGWIEKAKndndRYLITD------ALNKIKKLFE 326
Cdd:pfam02534 158 L-------------IALVLRSKPTRTIGQTLRFVRNMLSEP---NLIENKELAV----LLNELDgshhdrVGDNLRFYVN 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 327 SEGEAKSSLEETFQKKLNLFTLPLFRKATDRNDFDLRLLRKEKMTVYLGISADDAKIADEFLNLFFNFAIDVNMRENPDF 406
Cdd:pfam02534 218 KTDETRSSVIGTAVSELALYADPEVRNATSGSDFDLRDLRRDKTSVYVILNPKDLTVVSPLLRVFFQMVVELLYLKLPNG 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 407 VPENKHdVLFLLDEFPAIGAMHYIKKASGFIAGFKLKLLTIYQNLSQLIEIYGVYGAKTLMSMHPCRVIYAVSEKDD-AD 485
Cdd:pfam02534 298 DGRPKE-VLFLLDEFPSLGKLEILEEALATIRGYGIRLTTICQSISQLKETYGGEGAKSILSNHAVVICFAASNDEEtAK 376
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 486 EVSAKLGYTTLKAKGKSKSRNKGGTSQGESENDAQRALVLPQELGTLKFEEQFVILKGEHPIKCHKAMYYNDDFFMDKLI 565
Cdd:pfam02534 377 YISKLLGKTTVEVESSSKSTDAKGSSRSRSISEVQRPLLTPDEVLRMPDDEQIVITKGQPPIKCKKALYFKDEDFKAELN 456
|
490
....*....|..
gi 1319952599 566 SLSPYLQGVKAG 577
Cdd:pfam02534 457 KPTALTASVKLG 468
|
|
| VirD4 |
COG3505 |
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, ... |
145-557 |
2.07e-87 |
|
Type IV secretory pathway, VirD4 component, TraG/TraD family ATPase [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442728 [Multi-domain] Cd Length: 402 Bit Score: 277.25 E-value: 2.07e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 145 AGTRAGKGAGIVIPNL--LDFEFSMVVLDPKQECYNITSRYRQKtLGHKVFLLDPF-SSKTHGFNPLfyvdlDHEKGAGY 221
Cdd:COG3505 6 GPTGSGKTVGLVIPNLtqLARGESVVVTDPKGDLAELTAGFRRR-AGYDVYVFDPFdPERSHRWNPL-----DEIRDPAD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 222 LLNLSTTLWPVA-GLAGAEAHFNSGAGRVFIAyteLLHFAMKYDRKyleavgvkplfSIGTVLDLyynvnqeeLLTDREG 300
Cdd:COG3505 80 AQELAEALIPALgGGGGGDPFWREAARALLAA---LILALAEEGRR-----------TLADVYRL--------LSEPEEE 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 301 WIE--KAKNDNDRYLITDALNKIkklFESEGEAKSSLEETFQKKLNLFTLPLFRKATDRNDFDLRLLRKEKMTVYLGISA 378
Cdd:COG3505 138 LREllEALPESPHPPVADTLAAF---LNAAEKTRSSVLSTLASALELLSDPEVAALTSGSDFDLRDLIREKGTLYLVLPP 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 379 DDAKIADEFLNLFFNFAIDVNMREnPDFVPENKHDVLFLLDEFPAIGAMHYIKKASGFIAGFKLKLLTIYQNLSQLIEIY 458
Cdd:COG3505 215 DDLSTLAPLLRLLLSQLIRALLRR-AERSGRLPRPVLLLLDEFANLGRLPSLETLLATGRGYGIRLVLILQSLAQLEAIY 293
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 459 GVYGAKTLMSMHPCRVIYAVSEKDDADEVSAKLGYTTLKAkgKSKSRNKGGTSQGESEndAQRALVLPQELGTLKFEEQF 538
Cdd:COG3505 294 GEEGAETILGNCGTKIFLGVNDPETAEYLSELLGKRTVER--RSESRSRGSRSRSRSE--QERPLLTPDELRRLPDGEAI 369
|
410
....*....|....*....
gi 1319952599 539 VILKGEHPIKCHKAMYYND 557
Cdd:COG3505 370 VLVRGGPPIRAKKIRYYKD 388
|
|
| PRK13897 |
PRK13897 |
type IV secretion system component VirD4; Provisional |
90-565 |
2.92e-47 |
|
type IV secretion system component VirD4; Provisional
Pssm-ID: 237549 [Multi-domain] Cd Length: 606 Bit Score: 175.37 E-value: 2.92e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 90 KPKTALFGEARFATDADVRKS-----KQVTWGNDKKGGVIIGRYKGQLLrytqpdFvsmgAGTRAGKGAGIVIPNLLDFE 164
Cdd:PRK13897 115 KKKEKVHGDARWASESDIRKAglrskKGMLLGKDKGGYFVADGFQHALL------F----APTGSGKGVGFVIPNLLFWE 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 165 FSMVVLDPKQECYNITSRYRQKtLGHKVFLLDPFS--SKTHGFNPLFYVdldhEKGAGYLLNlstTLWPVAGLAGAEAHF 242
Cdd:PRK13897 185 DSVVVHDIKLENYELTSGWREK-QGQKVFVWEPANpdGISHCYNPLDWV----STKPGQMVD---DVQKIANLIMPEQDF 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 243 -NSGAGRVFIAYTellhfamkydrKYLEAVGVKpLFSIGTVL------DLYYNVnqeELLTDREGWIekakndndryLIT 315
Cdd:PRK13897 257 wNNEARSLFLGVV-----------LYLLADPEK-VKSFGEVVrtmrsdDVVYNL---AVVLDTLGKV----------IHP 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 316 DALNKIKKLFESEGEAKSSLEETFQKKLNLFTLPLFRKATDRNDFDLRLLRKEKMTVYLGISADDAKIADEFLNLFFNFA 395
Cdd:PRK13897 312 VAYMNIAAFLQKADKERSGVISTMNSSLELWANPLIDTATASSDFNIQEFKKKKTTVYVGLTPDNLTRLQPLMQVFYQQA 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 396 IDVNMRENPDfvPENKHDVLFLLDEFPAIGAMHYIKKASGFIAGFKLKLLTIYQNLSQLIEIYGVYGAKTLMSMHPCRVI 475
Cdd:PRK13897 392 TEFLCRKLPD--KDEPYGVLFLMDEFPTLGKMEQFKTGIAYFRGYRVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRIT 469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 476 YAVSEKDDADEVSAKLGYTTLKAKGKSKSR----NKGGTSQGESEndAQRALVLPQELGTLKFEEQFVILKGEHPIKCHK 551
Cdd:PRK13897 470 FAANNIETANLISQLVGNKTVEQESLNKPKfldlNPASRSLHISE--VQRALLLPQEVIMLPRDEQILLIESTYPIKSKK 547
|
490
....*....|....
gi 1319952599 552 AMYYNDDFFMDKLI 565
Cdd:PRK13897 548 IKYYEDKFFTSRLL 561
|
|
| PRK13850 |
PRK13850 |
type IV secretion system protein VirD4; Provisional |
67-557 |
4.09e-47 |
|
type IV secretion system protein VirD4; Provisional
Pssm-ID: 237531 [Multi-domain] Cd Length: 670 Bit Score: 175.83 E-value: 4.09e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 67 KALGVGLV-GALLMVGGLILSgnrKPKTALFGEARFATDADVRKSKQVTWGNDKKG---GVIIG-RYKGQLLRYTQPDFV 141
Cdd:PRK13850 66 RGLAIVVStSVVVLLSQLIVS---LRNREHHGTARWAEEGEMRHAGYLQRYSRITGpifGKTCGpRWFGSYLTNGEQPHS 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 142 SMGAGTRAGKGAGIVIPNLLDFEFSMVVLDPKQECYNITSRYRqKTLGHKVFLLDPFSS--KTHGFNPLFYV-DLDHEKG 218
Cdd:PRK13850 143 LVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFELTSRAR-KASGDAVFKFAPLDPerRTHCYNPVLDIaALPPERR 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 219 AGYLLNLSTTLWPVAGlAGAEAhFNSGAGRVFIAytellhfamkydrKYLEAVGvKPLFSIGTVLDLYYNVNQEELLTDR 298
Cdd:PRK13850 222 FTETRRLAANLITAKG-KGAEG-FIDGARDLFVA-------------GILACIE-RGTPTIGAVYDLFAQPGEKYKLFAQ 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 299 EGwiEKAKN-DNDRYLITDALNKIKKLfesegeaKSSLEETFQKKLNLFTLPLFRKATDRNDFDLRLLRKEKMTVYLGIS 377
Cdd:PRK13850 286 LA--EETQNkEAQRIFDNMAGNDTKIL-------TSYTSVLGDGGLNLWADPLVKAATSRSDFSVYDLRRKRTCIYLCVS 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 378 ADDAKIADEFLNLFFNFAIDVNMRENPDfvPENKHDVLFLLDEFPAIGAMHYIKKASGFIAGFKLKLLTIYQNLSQLIEI 457
Cdd:PRK13850 357 PNDLEVVAPLMRLLFQQVVSILQRSLPG--KDERHEVLFLLDEFKHLGKLEAIETAITTIAGYKGRFMFIIQSLSALTGT 434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 458 YGVYGAKTLMSMHPCRVIYAVSEKDDADEVSAKLGYTTLKAKGKSKSRNKGGTSQGEsENDAQRALVLPQELGTLKFEEQ 537
Cdd:PRK13850 435 YDEAGKQNFLSNTGVQVFMATADDETPTYISKAIGDYTFKARSTSYSQARMFDHNIQ-ISDQGAPLLRPEQVRLLDDDTE 513
|
490 500
....*....|....*....|
gi 1319952599 538 FVILKGEHPIKCHKAMYYND 557
Cdd:PRK13850 514 IVLIKGQPPLKLRKVRYYSD 533
|
|
| PRK13880 |
PRK13880 |
conjugal transfer coupling protein TraG; Provisional |
65-528 |
2.48e-25 |
|
conjugal transfer coupling protein TraG; Provisional
Pssm-ID: 237540 Cd Length: 636 Bit Score: 110.60 E-value: 2.48e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 65 GIKALGVGLVGALLMVGglILSGNRKPKTALFGEARFATDADV---------RKSKQVTWGNDKKG--GVIIGRY---KG 130
Cdd:PRK13880 88 GMVVSTVGLLGVAVAKV--VTSNSSKANEYLHGSARWAEKKDIqaagllpreRNVLEIVTGKAAPTatGVYVGGWqdkDG 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 131 QL--LRYTQPDFVSMGAGTRAGKGAGIVIPNLLDFEFSMVVLDPKQECYNITSRYRQKTLGHKVFLLDPFSSK-THGFNP 207
Cdd:PRK13880 166 NFhyLRHNGPEHVLTYAPTRSGKGVGLVVPTLLSWGHSSVITDLKGELWALTAGWRQKHAKNKVLRFEPASLSgSVCWNP 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 208 LFYVDLDHEKGAGYLLNLSTTLWPVAGlAGAEAHFNSGAGRVFIAYteLLHFAMKYDrkyleAVGVKPLFSigtvldlyy 287
Cdd:PRK13880 246 LDEIRLGTEYEVGDVQNLATLIVDPDG-KGLESHWQKTAFALLVGV--ILHALYKAK-----NEGGTATLP--------- 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 288 nvNQEELLTD-----REGWIEKAK----NDNDRYLITDALNKIkkLFESEGEAKSSLeETFQKKLNLFTLPLFRKATDRN 358
Cdd:PRK13880 309 --SVDAMLADpnrdiGELWMEMTTyghvDGQNHPAIGSAARDM--MDRPEEEAGSVL-STAKSYLALYRDPVVARNVSRS 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 359 DFDLRLLRKEKMTVYLGISA---DDAK---IADEFLNLFFNFAIDVNMRENPDFVPENKHDVLFLLDEFPAIGAMHYIKK 432
Cdd:PRK13880 384 DFRIKDLMHHDDPVSLYIVTqpnDKARlrpLVRVMVNMIVRLLADKMDFENGRPVAHYKHRLLMMLDEFPSLGKLEILQE 463
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 433 ASGFIAGFKLKLLTIYQNLSQLIEIYGVYGA-KTLMSMHPCRVIYAVSEKDDADEVSAKLGYTTLKAKGKSKSRNKGGTS 511
Cdd:PRK13880 464 SLAFVAGYGIKCYLICQDINQLKSRETGYGHdESITSNCHVQNAYPPNRVETAEHLSKLTGQTTVVKEQITTSGRRTSAM 543
|
490 500
....*....|....*....|
gi 1319952599 512 QGE---SENDAQRALVLPQE 528
Cdd:PRK13880 544 LGQvsrTYQEVQRPLLTPDE 563
|
|
| PRK13822 |
PRK13822 |
conjugal transfer coupling protein TraG; Provisional |
92-555 |
1.39e-24 |
|
conjugal transfer coupling protein TraG; Provisional
Pssm-ID: 237522 [Multi-domain] Cd Length: 641 Bit Score: 108.51 E-value: 1.39e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 92 KTALFGEARFAT----------------------DADVRKSKQV------TWGndkKGGviigryKGQLLRYTQpDFVS- 142
Cdd:PRK13822 156 KRAIHGDADWMKmkeaaklfppdggivigeryrvDKDSVAALPFrpddrtTWG---KGG------KAPLLTFDG-DFGSt 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 143 ---MGAGTRAGKGAGIVIPNLLDFEFSMVVLDPKQECYNITSRYRqKTLGHKVFLLDPFSSKThGFNPLfyvdldhekga 219
Cdd:PRK13822 226 hglVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHR-RDAGREVIVLDPTNPGT-GFNVL----------- 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 220 GYLLNLSTT----LWPVAG-LAGAEAHFNSGAGRVFIAYTELLhfamkydrkyLEAVgvkplfsIGTV-LDLYYNVNQEE 293
Cdd:PRK13822 293 DWIGRSGGTkeedIVAVASwILSDSKRTESSRDDFFRNSAHQL----------LTAL-------LAHVcLSGEYEGKERT 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 294 LLTDREGWIEKAKNDNDRylitdaLNKIKKLFESE------GEAKSSLEETFQ-------KKLNLFTLPLFRKATDRNDF 360
Cdd:PRK13822 356 LRTLRAILSEPEPSLRAR------LRDIYENSESDfirenvGVFVNMTEQTFSgvyatasKDTQWLSYPNYAALVSGNSF 429
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 361 DLRLLRKEKMTVYLGIsadDAKIADE-----------FLNLFFNfaidvnmrENPDFvpenKHDVLFLLDEFPAIGAMHY 429
Cdd:PRK13822 430 STSDLAAGNTDVFINI---PLKILESypglarviigsLLNAMYN--------ADGNV----KGRALFLLDEVARLGYMRI 494
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 430 IKKASGfiAGFK--LKLLTIYQNLSQLIEIYGVYGAKTLMSMHPCRVIYAVSEKDDADEVSAKLGYTTLKAKGKSKSRNK 507
Cdd:PRK13822 495 LETARD--AGRKygITLMLIYQSIGQLREHFGGRGATSWFESASWISFAAIKDLDTADYISERCGEMTVEVDQTSRSSGW 572
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 1319952599 508 GGTSQGESENDAQRALVLPQE-LGTLKFEEQFVILKGEHPIKCHKAMYY 555
Cdd:PRK13822 573 SGSSRSRSKQLQRRPLIMPHEiLQSMRADEQIIFVQGNPPLRCGRAIYF 621
|
|
| PRK13876 |
PRK13876 |
conjugal transfer coupling protein TraG; Provisional |
65-560 |
1.72e-24 |
|
conjugal transfer coupling protein TraG; Provisional
Pssm-ID: 237538 Cd Length: 663 Bit Score: 108.09 E-value: 1.72e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 65 GIKALGVGLVGALLMVGGLILSGNRKPKTALFGEARFATDADVRKSkqvtwGNDKKGGVIIGRYKGQLLRYTQPDFVSMG 144
Cdd:PRK13876 76 GAIAASGGFVAIAVAIAMSVWRAREAKRVTTYGSARWAERREIRAA-----GLLGPDGVVLGRHDRDYLRHDGPEHVLCF 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 145 AGTRAGKGAGIVIPNLLDFEFSMVVLDPKQECYNITSRYRQKtLGHkVFLLDPFSSKTHGFNPLF--------------- 209
Cdd:PRK13876 151 APTRSGKGVGLVVPTLLTWPGSAIVHDIKGENWQLTAGFRAR-FGR-VLLFDPTNAKSAAYNPLLevrrgewevrdvqni 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 210 ---YVD-------LDH-EKGAGYLL----------NLSTTLwpvAGLAGaeahFNSGAGRVFiayTELLHFAMKydRKYL 268
Cdd:PRK13876 229 adiLVDpegslerRNHwEKTSHALLvgailhvlyaEEDKTL---AGVAN----FLSDPKRPI---EATLRAMMT--TPHL 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 269 EAVGVKPLFSIGTvldlyynvnqEELLTdregwiekaKNDNDRylitdalnkikklfesegeakSSLEETFQKKLNLFTL 348
Cdd:PRK13876 297 GEAGPHPVVASAA----------RELLN---------KSDNER---------------------SGVLSTAMSFLGLYRD 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 349 PLFRKATDRNDFDLRLL--RKEKMTVYLGISADDAKIADEFLNLFFNfAIDVNMRENPDFvPENKHDVLFLLDEFPAIGA 426
Cdd:PRK13876 337 PVVAEVTSRCDWRIADLvaGERPVSLYLVVPPSDISRTKPLIRLILN-QIGRRLTEDLDG-KARRHRLLLMLDEFPALGR 414
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 427 MHYIKKASGFIAGFKLKLLTIYQNLSQlieIYGVYGAKT--LMSMHpCRVIYAVSEKDDADEVSAKLGYTT-LKAkgksk 503
Cdd:PRK13876 415 LDFFESALAFMAGYGIKSFLIAQSLNQ---IEKAYGQNNsiLDNCH-VRVSFATNDERTAKRVSDALGTATeLRA----- 485
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1319952599 504 SRNKGGTSQG-------ESENDAQRALVLPQELGTLKFEEQFVILKGEHPIKCHKAMYYNDDFF 560
Cdd:PRK13876 486 MKNYAGHRLSpwlghlmVSRQETARPLLTPGEVMQLPPDDEIVMVSGVPPIRAKKARYYEDARF 549
|
|
| TraG-D_C |
pfam12696 |
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as ... |
414-534 |
1.98e-23 |
|
TraM recognition site of TraD and TraG; This family includes both TraG and TraD as well as VirD4 proteins. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems. This domain interacts with the relaxosome component TraM via the latter's tetramerization domain. TraD is a hexameric ring ATPase that forms the cytoplasmic face of the conjugative pore.
Pssm-ID: 432726 [Multi-domain] Cd Length: 125 Bit Score: 95.79 E-value: 1.98e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 414 VLFLLDEFPAIGAMHYIKKASGFIAGFKLKLLTIYQNLSQLIEIYGVYGAKTLMSMHPCRVIYAVSEKDDADEVSAKLGY 493
Cdd:pfam12696 2 VLFVLDEFANLGKIPDLEKLISTGRSRGISLMLILQSIAQLEELYGKDGAETILGNCNTKVFLGGGDEETAKYLSKLLGK 81
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1319952599 494 TTLKAKGKSKSRNKGGTSQGESENDAQ---RALVLPQELGTLKF 534
Cdd:pfam12696 82 YTVVSTTTSSSSSGSGGSGSSSSSSSQlvgRPLLTPDELRRLPR 125
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
369-478 |
1.43e-13 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 68.01 E-value: 1.43e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 369 KMTVYLGISaDDAKIADEFLNLFFNFAIDVNMRENPDFVPENKHDVLFLLDEFPAIGAMHYIKKASGFIAGFKLKLLTIY 448
Cdd:cd01127 36 KGELFLVIP-DRDDSFAALRALFFNQLFRALTELASLSPGRLPRRVWFILDEFANLGRIPNLPNLLATGRKRGISVVLIL 114
|
90 100 110
....*....|....*....|....*....|
gi 1319952599 449 QNLSQLIEIYGVYGAKTLMSMHPCRVIYAV 478
Cdd:cd01127 115 QSLAQLEAVYGKDGAQTILGNCNTKLYLGT 144
|
|
| TrwB_AAD_bind |
pfam10412 |
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling ... |
333-547 |
1.02e-10 |
|
Type IV secretion-system coupling protein DNA-binding domain; The plasmid conjugative coupling protein TrwB forms hexamers from six structurally very similar protomers. This hexamer contains a central channel running from the cytosolic pole (made up by the AADs) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB_AAD (all-alpha domain) domain appears to be the DNA-binding domain of the structure. TrwB, a basic integral inner-membrane nucleoside-triphosphate-binding protein, is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells and export.
Pssm-ID: 431268 [Multi-domain] Cd Length: 386 Bit Score: 63.85 E-value: 1.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 333 SSLEETFQKKLNLFTLplfrKATDRNDFDLR-LLRKEKMTVYLGISADDA--KIADEFLNLFFNFAIDVNMRenpdfVPE 409
Cdd:pfam10412 169 ASIRATLATNLRALRF----LAPDGERFSIReWITEEDPGGWLFITYRADqrAALRPLLSCWLDLAIRALLS-----LPP 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952599 410 NKHDVL-FLLDEFPAIGAMHYIKKASGFIAGFKLKLLTIYQNLSQLIEIYGVYGAKTLMSMHPCRVIYAVSEKDDADEVS 488
Cdd:pfam10412 240 SRDRRLwFFLDELPALGRLPSLKDLLAEGRKFGGAVVLGLQSIAQLREIYGEDGAQTILSNCGTKLILRVSDGETAELCS 319
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1319952599 489 AKLGYTTLKAKGKSKS--RNKGGTSQGESENDAQRALVLPQELGTLKFEEQFVILKGEHPI 547
Cdd:pfam10412 320 DLLGDREVERMDESLSygANNSRDGVTLGRQRRVRPLVLPSEIMNLPRLHGYLKFPDGFPV 380
|
|
| TrwB_TraG_TraD_VirD4 |
cd01127 |
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are ... |
145-183 |
1.90e-03 |
|
TrwB/TraG/TraD/VirD4 family of bacterial conjugation proteins; The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion (T4S) systems, versatile bacterial secretion systems mediating transport of protein and/or DNA. They are present in gram-negative and gram-positive bacteria, as well as archaea. They form hexameric rings and belong to the RecA-like NTPases superfamily, which also includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases.
Pssm-ID: 410871 [Multi-domain] Cd Length: 144 Bit Score: 39.13 E-value: 1.90e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1319952599 145 AGTRAGKGAGIVIPNLLDF--EFSMVVLDPKQECYNITSRY 183
Cdd:cd01127 6 GTTGSGKTTSIVIPLLDQAarGGSVIITDPKGELFLVIPDR 46
|
|
| |
