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ATPase [Klebsiella pneumoniae]
Protein Classification
List of domain hits
Name
Accession
Description
Interval
E-value
CagE_TrbE_VirB super family
cl40727 CagE, TrbE, VirB family, component of type IV transporter system; This family includes the ...
114-919
0e+00
CagE, TrbE, VirB family, component of type IV transporter system; This family includes the Helicobacter pylori protein CagE, which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration. Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro. Similar type IV transport systems are also found in other bacteria. This family includes the TrbE and VirB proteins from the respective trb and Vir conjugal transfer systems in Agrobacterium tumefaciens. homologs of VirB proteins from other species are also members of this family, e.g. VirB from Brucella suis.
TIGR00929 :Pssm-ID: 454818 [Multi-domain]
Cd Length: 785
Bit Score: 562.71
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 114 QRQPVEE FIPY ST H IHPFICK TK RVDYVASWE L Q G EA F QCQTA E A L E LL SEQF N K AL V S FSGET V TFY VHT I R E K YFDRF 193
Cdd:TIGR00929 4 KEYSMSD FIPY AG H YDDHVIL TK NGSLMGIIK L E G IS F ESASD E D L N LL HREL N A AL K S IGSGQ V ALW VHT V R R K IVIDY 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 194 - NSVSG N K FA DKVM E RYYNDMGQTPF Y R N RIFF T VC Y I P FN r EEK LE RKA K GRAYQ -------- QKSQD E A I VRMNE I RE 264
Cdd:TIGR00929 84 p DPEFK N G FA AAID E EWRRKFASSDL Y E N DLYL T LE Y K P DS - IGV LE KFK K SLTKK treefqdn YRETL E S I KALED I KR 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 265 TVEGM LR H Y RPVP L GLIEEGKKV YS S LL S F FNY L IS G QWQ -- KIR V GNIPFYNVLG SS DLY F SS D SGQANQFDRK RFF RC 342
Cdd:TIGR00929 163 NLLEL LR E Y GAEL L KEYDKTGHI YS E LL E F LAF L VN G NDI pv TPP V IPGYLDSYIP SS EVL F GK D GFVIRSPKDN RFF SV 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 343 I E IK NL P GNVDV G G L D ALL FEQA E YVT T Q SF TCM SK TE AL ETIKS K G K A L N S AQ D D A V S EQVD LD VLR D MI TSGD VSV G K 422
Cdd:TIGR00929 243 I S IK EY P EKTEP G I L N ALL ELDC E FIL T H SF SFL SK EA AL SKLGR K R K R L I S KG D R A K S QIAE LD EAL D EL TSGD FVM G E 322
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 423 W H Y S F V L YA DS L DQ L VRDSNDI R AT L TDL G MIVTLAQIA L P AAF FA QLPGN YNLR PR CVP I S S Q NFA DMTA FH SVYG GK R 502
Cdd:TIGR00929 323 H H L S L V V YA ED L EK L DAALREA R SL L NAC G IVAVIETLG L E AAF WS QLPGN FSWN PR KSL I T S R NFA SLIP FH NFNL GK L 402
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 503 DRL PWG E A MLM L D T E S RDAY Y L N L H QSLLE dddfnrq R LG NAK I I G TA G A GKT M LL DM L AYA MQKY RN hatfspaakskr 582
Cdd:TIGR00929 403 RGN PWG P A LTL L K T Q S GTPF Y F N F H VRDAK ------- V LG HTL I F G PT G S GKT T LL NF L LAQ MQKY GG ------------ 463
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 583 L T TVF FDKDRG A E VA IRA L GG E Y YR I RA GE SS G W NPF A LE S T R RNR K F V K DLMKLI VT RR G Q - PL S DRQEDD L FQ A V D D V 661
Cdd:TIGR00929 464 M T IFA FDKDRG M E IF IRA F GG A Y LE I KD GE PF G F NPF Q LE D T E RNR A F L K EWLAML VT LD G S t DI S AEDRNA L SS A I D T V 543
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 662 MDMPLTQ R Q yg ITQ LL SY L NEPT tveaqe NG L RI RL KQ W KQ GG EF GW V FDN EA D TF D VR nv DNF G I D G TE F LD DADTRAA 741
Cdd:TIGR00929 544 YREGPLI R S -- LSD LL NF L PKDY ------ ID L AD RL EP W LK GG DY GW L FDN PT D DL D LS -- KIT G F D L TE L LD NPKVATP 613
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 742 ISF YL LY R VTSL LDGR RLV II M DE F W KW L TSDA F TDFAYNM LK VI RK L NG V V IF ATQS LDEVVKNK IA RAAM E VTE T S I W 821
Cdd:TIGR00929 614 VLM YL FH R INEA LDGR PFL II I DE A W QY L GNPV F AAKIRDW LK TL RK A NG I V VL ATQS INDALGSR IA DSIL E QCA T K I F 693
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 822 MA NP D AD YD DY V E KA K VDPAH F NII K TLDPG SR Q FL V vksal RR G EV kkf AALVKFD L SA M GD YL KI LS AGEP N L EI F D E 901
Cdd:TIGR00929 694 LP NP E AD RE DY A E GF K LTERE F ELL K STPEE SR K FL I ----- KQ G QS --- SVVAELN L GG M DN YL RV LS SDTE N V EI I D A 765
810
....*....|....*....
gi 1319952606 902 IW - RP G MK P E DW IDRYLER 919
Cdd:TIGR00929 766 LI k EY G DD P D DW LPIFYRA 784
VirB3
COG3702 Type IV secretory pathway, VirB3 component [Intracellular trafficking, secretion, and ...
1-102
3.74e-21
Type IV secretory pathway, VirB3 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442916
Cd Length: 97
Bit Score: 88.78
E-value: 3.74e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 1 MATVY K A LTRP TLLR GVP IA PF M L S V IAIA I IGLIVTKW L W LL I - PA L Y F LM R R I TS RD EHV F S L MWVWWK T LGK kgmvl 79
Cdd:COG3702 2 EDPLF K G LTRP AMFL GVP LV PF V L N V MVSL I LFIWTGSL L Y LL L a IP L H F VL R L I CR RD PRF F R L LLLRLR T RPR ----- 76
90 100
....*....|....*....|...
gi 1319952606 80 S RN V at RF YKARAV S HTR Y DNID 102
Cdd:COG3702 77 T RN R -- RF WGGNSY S PLP Y RRRR 97
Name
Accession
Description
Interval
E-value
VirB4_CagE
TIGR00929 type IV secretion/conjugal transfer ATPase, VirB4 family; Type IV secretion systems are found ...
114-919
0e+00
type IV secretion/conjugal transfer ATPase, VirB4 family; Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Pssm-ID: 273346 [Multi-domain]
Cd Length: 785
Bit Score: 562.71
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 114 QRQPVEE FIPY ST H IHPFICK TK RVDYVASWE L Q G EA F QCQTA E A L E LL SEQF N K AL V S FSGET V TFY VHT I R E K YFDRF 193
Cdd:TIGR00929 4 KEYSMSD FIPY AG H YDDHVIL TK NGSLMGIIK L E G IS F ESASD E D L N LL HREL N A AL K S IGSGQ V ALW VHT V R R K IVIDY 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 194 - NSVSG N K FA DKVM E RYYNDMGQTPF Y R N RIFF T VC Y I P FN r EEK LE RKA K GRAYQ -------- QKSQD E A I VRMNE I RE 264
Cdd:TIGR00929 84 p DPEFK N G FA AAID E EWRRKFASSDL Y E N DLYL T LE Y K P DS - IGV LE KFK K SLTKK treefqdn YRETL E S I KALED I KR 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 265 TVEGM LR H Y RPVP L GLIEEGKKV YS S LL S F FNY L IS G QWQ -- KIR V GNIPFYNVLG SS DLY F SS D SGQANQFDRK RFF RC 342
Cdd:TIGR00929 163 NLLEL LR E Y GAEL L KEYDKTGHI YS E LL E F LAF L VN G NDI pv TPP V IPGYLDSYIP SS EVL F GK D GFVIRSPKDN RFF SV 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 343 I E IK NL P GNVDV G G L D ALL FEQA E YVT T Q SF TCM SK TE AL ETIKS K G K A L N S AQ D D A V S EQVD LD VLR D MI TSGD VSV G K 422
Cdd:TIGR00929 243 I S IK EY P EKTEP G I L N ALL ELDC E FIL T H SF SFL SK EA AL SKLGR K R K R L I S KG D R A K S QIAE LD EAL D EL TSGD FVM G E 322
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 423 W H Y S F V L YA DS L DQ L VRDSNDI R AT L TDL G MIVTLAQIA L P AAF FA QLPGN YNLR PR CVP I S S Q NFA DMTA FH SVYG GK R 502
Cdd:TIGR00929 323 H H L S L V V YA ED L EK L DAALREA R SL L NAC G IVAVIETLG L E AAF WS QLPGN FSWN PR KSL I T S R NFA SLIP FH NFNL GK L 402
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 503 DRL PWG E A MLM L D T E S RDAY Y L N L H QSLLE dddfnrq R LG NAK I I G TA G A GKT M LL DM L AYA MQKY RN hatfspaakskr 582
Cdd:TIGR00929 403 RGN PWG P A LTL L K T Q S GTPF Y F N F H VRDAK ------- V LG HTL I F G PT G S GKT T LL NF L LAQ MQKY GG ------------ 463
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 583 L T TVF FDKDRG A E VA IRA L GG E Y YR I RA GE SS G W NPF A LE S T R RNR K F V K DLMKLI VT RR G Q - PL S DRQEDD L FQ A V D D V 661
Cdd:TIGR00929 464 M T IFA FDKDRG M E IF IRA F GG A Y LE I KD GE PF G F NPF Q LE D T E RNR A F L K EWLAML VT LD G S t DI S AEDRNA L SS A I D T V 543
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 662 MDMPLTQ R Q yg ITQ LL SY L NEPT tveaqe NG L RI RL KQ W KQ GG EF GW V FDN EA D TF D VR nv DNF G I D G TE F LD DADTRAA 741
Cdd:TIGR00929 544 YREGPLI R S -- LSD LL NF L PKDY ------ ID L AD RL EP W LK GG DY GW L FDN PT D DL D LS -- KIT G F D L TE L LD NPKVATP 613
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 742 ISF YL LY R VTSL LDGR RLV II M DE F W KW L TSDA F TDFAYNM LK VI RK L NG V V IF ATQS LDEVVKNK IA RAAM E VTE T S I W 821
Cdd:TIGR00929 614 VLM YL FH R INEA LDGR PFL II I DE A W QY L GNPV F AAKIRDW LK TL RK A NG I V VL ATQS INDALGSR IA DSIL E QCA T K I F 693
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 822 MA NP D AD YD DY V E KA K VDPAH F NII K TLDPG SR Q FL V vksal RR G EV kkf AALVKFD L SA M GD YL KI LS AGEP N L EI F D E 901
Cdd:TIGR00929 694 LP NP E AD RE DY A E GF K LTERE F ELL K STPEE SR K FL I ----- KQ G QS --- SVVAELN L GG M DN YL RV LS SDTE N V EI I D A 765
810
....*....|....*....
gi 1319952606 902 IW - RP G MK P E DW IDRYLER 919
Cdd:TIGR00929 766 LI k EY G DD P D DW LPIFYRA 784
VirB4
COG3451 Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ...
337-904
1.44e-134
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain]
Cd Length: 546
Bit Score: 413.96
E-value: 1.44e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 337 K R FF R CIE IK NL P GNVDV G G LD A LL FEQA E YVT TQSFT CMS K T EAL ETI K S K GKA L N S AQ -------- DDA V S EQV D LDV 408
Cdd:COG3451 7 D R YG R VLS IK GY P SETSP G L LD P LL QLPC E FIV TQSFT PLD K D EAL KKL K R K RRR L E S KR kseqalvd DDA E S QAE D AEE 86
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 409 LR D MIT SG DVSV G KW H YSFVLY AD S L DQ L VRDSNDIRAT L TDL G MIVTLAQIALPA AF FAQ LPGN YNL R P R CVPISSQ N F 488
Cdd:COG3451 87 AL D ELQ SG GERL G EV H LTLTVF AD D L EE L EEAVREVESA L QSA G FTLVRETLNQEE AF LSS LPGN FDY R L R RRLLTTS N L 166
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 489 A DMTA FHS VYG G K rdrl PWG ea MLM L D T E S RDAYYLNL H qslledddf NRQRL GN AK I I G TA G A GK TM LL DM L AYAMQK Y 568
Cdd:COG3451 167 A ALFP FHS FEL G D ---- PWG -- IYL L N T R S GTPVFFDF H --------- DGLDN GN TL I L G PS G S GK SF LL KL L LLQLLR Y 231
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 569 RNH atfspaakskrlt T V F FD KDRGA E VAI RALGG E Y YRIRA G ESS G W NPF A LE S T RRN R K F VKD L MK L IVT R R G Q PL SD 648
Cdd:COG3451 232 GAR ------------- I V I FD PGGSY E ILV RALGG T Y IDLSP G SPT G L NPF D LE D T EEK R D F LLE L LE L LLG R E G E PL TP 298
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 649 RQEDDLFQ AV DDVMDMPLTQRQYGITQ L LSY L N E PT tv EA QE ng L RI RL KQWKQ GG EF GW V FD NE a DTF D VRNVDNFGI D 728
Cdd:COG3451 299 EERAAIDR AV RALYRRADPEERTTLSD L YEL L K E QP -- EA KD -- L AA RL EPYTK GG SY GW L FD GP - TNL D LSDARFVVF D 373
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 729 G TE F LD DADT R AAISF YLL Y R VTSL L ---- DGR RLV I IM DE F W KW L TSD AF TD F AYNM LK VI RK L NG V VIFATQS LDEVV 804
Cdd:COG3451 374 L TE L LD NPEL R PPVLL YLL H R IWNR L rknn DGR PTL I VI DE A W LL L DNP AF AE F LEEW LK TL RK Y NG A VIFATQS VEDFL 453
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 805 KNK IA R A AM E VTE T S I WMAN P D AD YD DY V E KAKVDPAHFNI I KTLDP G S R Q FL vvksa LRR G EVKKF aalvk F D L SAMGD 884
Cdd:COG3451 454 SSP IA E A II E NSA T K I LLPQ P K AD IE DY A E LLGLSERELEL I RSAGR G K R D FL ----- IKQ G NGSVV ----- F R L DLSPE 523
570 580
....*....|....*....|
gi 1319952606 885 Y L KI LS AGEPNLE I F DE IWR 904
Cdd:COG3451 524 E L AL LS TKPEEVA I L DE LRA 543
PRK13898
PRK13898 type IV secretion system ATPase VirB4; Provisional
111-920
3.35e-94
type IV secretion system ATPase VirB4; Provisional
Pssm-ID: 172418
Cd Length: 800
Bit Score: 315.17
E-value: 3.35e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 111 KLNQRQPVEE FIPY ST H IHPFICK TK RVDYVASWE L Q G E AF QCQTA E A L ELLSEQF N KA L V S F S GETVTF Y V HTIR EK -- 188
Cdd:PRK13898 13 RSKRERHTSH FIPY KC H WNSSTIL TK DNSLLKVIK L S G F AF ETADD E D L DIQKNIR N QL L K S M S SGSFGL Y F HTIR RR ka 92
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 189 - YF D R F NS V S - G N K FA DK V MERYYNDMGQTPFYR N RIFF T VCYI P FNREEKLERKAKGRAY Q QKSQDEAIVR M N E IR E TV 266
Cdd:PRK13898 93 v FS D D F PT V K v P N D FA TY V NVEWRKKHATKQSFF N ELYI T ILRK P DTKGVEILEYFLKKLR Q KSNKEAWEND M K E MY E NL 172
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 267 E G M ------- LR H Y R P VP LG LIEEGKK V YSSL L S F FNYLIS - G QWQK --- IRV G N I PF Y nv L GSSD L Y F S S DSGQ A NQFD 335
Cdd:PRK13898 173 E E M tnrvvts LR N Y G P RL LG VRQTPSG V FCEI L E F LSSIVN c G DSPG pva LPR G T I DE Y -- L PTHR L F F G S KTIE A VSHN 250
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 336 RKRFFRC I E IK NLPG N VDV G G LD AL L FEQA E YVT TQSF TCMSKTE A LETIKSKGKALNSAQ D D AVS EQVDLDVLR D MI TS 415
Cdd:PRK13898 251 ESKYAGI I S IK EYGP N TSA G M LD GF L QLPY E FII TQSF QFTNRQV A IGKMQLQQNRMIQSG D K AVS QIAEISTAL D DA TS 330
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 416 GD VSV G KW H YSFVLYADSLDQ L VRDSNDIRAT L TDL G MIVTLAQIA L PA AF F AQLPGN YNLRP R CVP IS SQ N F A DMTAF H 495
Cdd:PRK13898 331 GD IAF G EH H LTILCIEKNIKA L ENALSLAEVE L SNC G VYPVREKVN L EP AF W AQLPGN FDYIV R KAT IS TL N M A GFASQ H 410
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 496 SVYG GK RDRLP WGEA MLML DT E S RDAY Y L N L H qsl LE D ddfnrqr L G NAK IIG TA GAGKT M L LDM L AYAMQ K yrnhat FS 575
Cdd:PRK13898 411 NYPL GK KFDNH WGEA VTVF DT T S GTPF Y F N F H --- VR D ------- V G HTL IIG PT GAGKT V L MNF L CAQAM K ------ FS 474
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 576 P aakskrl TTV FFDKDRGAE VA IRAL G G E Y YR I RAGESSGW NP FA L ES T RR NR K F VKDLM K LI VT RR G QP L SDRQEDDLF 655
Cdd:PRK13898 475 P ------- RMF FFDKDRGAE IF IRAL N G V Y TV I EPRLKCNF NP LQ L DD T SE NR T F LMEWL K VL VT SN G ES L TAQDIKRIN 547
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 656 Q AV DD vm DMP L TQRQYGITQ L LSY L NEPT tveaq E N G L RI R LKQ W KQG G EFGWV FDNE A D TF D VRNVDN FG IDGT E F L D D 735
Cdd:PRK13898 548 D AV EG -- NFK L KKEDRRLSN L VAF L GIDG ----- P N T L AG R IAM W HGK G SHAAI FDNE E D LL D FQKARV FG FEMG E L L K D 620
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 736 ADTR A AISF YL LY R VTSL LDG RRLV I IM DE F W KWLTSDA F TDFAYNM LKV I RKLN GV VIFATQS LDEVV K NK I ARAAMEV 815
Cdd:PRK13898 621 PVSL A PVLL YL FH R ISIS LDG TPSM I VL DE A W ALIDNPV F APKIKDW LKV L RKLN TF VIFATQS VEDAS K SA I SDTLVQQ 700
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 816 T E T S I WMA N PD A D y D D Y VEKAKVDPAHFNI IK TL DP GS R Q FL v V K SALR rgevkkf A ALVKFD L SA M G D YLKI LS AGEPN 895
Cdd:PRK13898 701 T A T Q I FLP N LK A T - D I Y RSVFMLSEREYIL IK HT DP TT R F FL - I K QGVS ------- A VVARIN L DG M D D IISV LS GRAET 771
810 820
....*....|....*....|....*.
gi 1319952606 896 LEIF D E I WRP - G MK P ED W IDRYL E RA 920
Cdd:PRK13898 772 VLLL D Q I REE v G DD P NK W LPIFY E AV 797
CagE_TrbE_VirB
pfam03135 CagE, TrbE, VirB family, component of type IV transporter system; This family includes the ...
278-479
2.77e-32
CagE, TrbE, VirB family, component of type IV transporter system; This family includes the Helicobacter pylori protein CagE, which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration. Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro. Similar type IV transport systems are also found in other bacteria. This family includes the TrbE and VirB proteins from the respective trb and Vir conjugal transfer systems in Agrobacterium tumefaciens. homologs of VirB proteins from other species are also members of this family, e.g. VirB from Brucella suis.
Pssm-ID: 367350 [Multi-domain]
Cd Length: 202
Bit Score: 124.38
E-value: 2.77e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 278 L GLIEEGKKV YS S LL S F F N Y LI S G QWQKI R VGNIPFY - NVL G S S DLY F SS D SGQANQFDRKRFFRC I E IK NL P GNVDV G G 356
Cdd:pfam03135 1 L SEYGKRGVI YS E LL E F Y N F LI N G ENHPV R LPRGMYL d EYI G T S RVP F GK D KFIIRTAKDEKYPSI I S IK EY P PETRS G L 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 357 LD AL L FEQA E YVT TQSF TCMS K TE AL ETI K SKGKA L n S AQ DDA V S EQVD L DVLR D MIT SGD VSV G KW H Y S F VL Y A DSLDQ 436
Cdd:pfam03135 81 LD KF L DLDE E LII TQSF SFKN K QK AL SFL K FTSRK L - S IS DDA K S QIME L EDAI D EVR SGD FAL G LY H N S L VL F A EDKEK 159
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1319952606 437 L VRDSNDIRAT L TDL G MIVTLAQ I ALPA AFF A QLPGN YN L RP R 479
Cdd:pfam03135 160 L DASVSEATSL L NAK G FVAVIET I GMEP AFF S QLPGN IR L NF R 202
VirB3
COG3702 Type IV secretory pathway, VirB3 component [Intracellular trafficking, secretion, and ...
1-102
3.74e-21
Type IV secretory pathway, VirB3 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442916
Cd Length: 97
Bit Score: 88.78
E-value: 3.74e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 1 MATVY K A LTRP TLLR GVP IA PF M L S V IAIA I IGLIVTKW L W LL I - PA L Y F LM R R I TS RD EHV F S L MWVWWK T LGK kgmvl 79
Cdd:COG3702 2 EDPLF K G LTRP AMFL GVP LV PF V L N V MVSL I LFIWTGSL L Y LL L a IP L H F VL R L I CR RD PRF F R L LLLRLR T RPR ----- 76
90 100
....*....|....*....|...
gi 1319952606 80 S RN V at RF YKARAV S HTR Y DNID 102
Cdd:COG3702 77 T RN R -- RF WGGNSY S PLP Y RRRR 97
VirB3
pfam05101 Type IV secretory pathway, VirB3-like protein; This family includes the Type IV secretory ...
3-74
1.75e-15
Type IV secretory pathway, VirB3-like protein; This family includes the Type IV secretory pathway VirB3 protein, that is found associated with bacterial inner and outer membranes. The family also includes the conjugal transfer protein TrbD family that contains a nucleotide binding motif and may provide energy for the export of DNA or the export of other Trb proteins.
Pssm-ID: 428303
Cd Length: 82
Bit Score: 72.27
E-value: 1.75e-15
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1319952606 3 TVY KALTRP TLLR GVP IAP F M L SVIAIA I IG L IVTK - W LW LL I P A L YFLM R R I TS RD EHV F SLMWV W WK T LGK 74
Cdd:pfam05101 2 PLF KALTRP AMFL GVP LEL F L L NGMVSV I LF L VGLS l W YL LL A P P L HLVL R L I AK RD PRM F RVLLL W LQ T RPR 74
PRK13854
PRK13854 type IV secretion system protein VirB3; Provisional
2-74
1.02e-05
type IV secretion system protein VirB3; Provisional
Pssm-ID: 139914
Cd Length: 108
Bit Score: 45.20
E-value: 1.02e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1319952606 2 AT V Y K A L TRP T L LR GVP IA pfm L SVIAIAII G LIVTK ----- WLWL L I P a L Y F LM R RITS RD EHVF S LMWVWWK T L G K 74
Cdd:PRK13854 8 AT L Y L A A TRP A L FL GVP LT --- L AGVFMMLA G FVIVI vqnpl YEVV L L P - L W F GA R LVVE RD YNAA S VVLLFLR T A G R 81
Name
Accession
Description
Interval
E-value
VirB4_CagE
TIGR00929 type IV secretion/conjugal transfer ATPase, VirB4 family; Type IV secretion systems are found ...
114-919
0e+00
type IV secretion/conjugal transfer ATPase, VirB4 family; Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Pssm-ID: 273346 [Multi-domain]
Cd Length: 785
Bit Score: 562.71
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 114 QRQPVEE FIPY ST H IHPFICK TK RVDYVASWE L Q G EA F QCQTA E A L E LL SEQF N K AL V S FSGET V TFY VHT I R E K YFDRF 193
Cdd:TIGR00929 4 KEYSMSD FIPY AG H YDDHVIL TK NGSLMGIIK L E G IS F ESASD E D L N LL HREL N A AL K S IGSGQ V ALW VHT V R R K IVIDY 83
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 194 - NSVSG N K FA DKVM E RYYNDMGQTPF Y R N RIFF T VC Y I P FN r EEK LE RKA K GRAYQ -------- QKSQD E A I VRMNE I RE 264
Cdd:TIGR00929 84 p DPEFK N G FA AAID E EWRRKFASSDL Y E N DLYL T LE Y K P DS - IGV LE KFK K SLTKK treefqdn YRETL E S I KALED I KR 162
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 265 TVEGM LR H Y RPVP L GLIEEGKKV YS S LL S F FNY L IS G QWQ -- KIR V GNIPFYNVLG SS DLY F SS D SGQANQFDRK RFF RC 342
Cdd:TIGR00929 163 NLLEL LR E Y GAEL L KEYDKTGHI YS E LL E F LAF L VN G NDI pv TPP V IPGYLDSYIP SS EVL F GK D GFVIRSPKDN RFF SV 242
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 343 I E IK NL P GNVDV G G L D ALL FEQA E YVT T Q SF TCM SK TE AL ETIKS K G K A L N S AQ D D A V S EQVD LD VLR D MI TSGD VSV G K 422
Cdd:TIGR00929 243 I S IK EY P EKTEP G I L N ALL ELDC E FIL T H SF SFL SK EA AL SKLGR K R K R L I S KG D R A K S QIAE LD EAL D EL TSGD FVM G E 322
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 423 W H Y S F V L YA DS L DQ L VRDSNDI R AT L TDL G MIVTLAQIA L P AAF FA QLPGN YNLR PR CVP I S S Q NFA DMTA FH SVYG GK R 502
Cdd:TIGR00929 323 H H L S L V V YA ED L EK L DAALREA R SL L NAC G IVAVIETLG L E AAF WS QLPGN FSWN PR KSL I T S R NFA SLIP FH NFNL GK L 402
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 503 DRL PWG E A MLM L D T E S RDAY Y L N L H QSLLE dddfnrq R LG NAK I I G TA G A GKT M LL DM L AYA MQKY RN hatfspaakskr 582
Cdd:TIGR00929 403 RGN PWG P A LTL L K T Q S GTPF Y F N F H VRDAK ------- V LG HTL I F G PT G S GKT T LL NF L LAQ MQKY GG ------------ 463
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 583 L T TVF FDKDRG A E VA IRA L GG E Y YR I RA GE SS G W NPF A LE S T R RNR K F V K DLMKLI VT RR G Q - PL S DRQEDD L FQ A V D D V 661
Cdd:TIGR00929 464 M T IFA FDKDRG M E IF IRA F GG A Y LE I KD GE PF G F NPF Q LE D T E RNR A F L K EWLAML VT LD G S t DI S AEDRNA L SS A I D T V 543
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 662 MDMPLTQ R Q yg ITQ LL SY L NEPT tveaqe NG L RI RL KQ W KQ GG EF GW V FDN EA D TF D VR nv DNF G I D G TE F LD DADTRAA 741
Cdd:TIGR00929 544 YREGPLI R S -- LSD LL NF L PKDY ------ ID L AD RL EP W LK GG DY GW L FDN PT D DL D LS -- KIT G F D L TE L LD NPKVATP 613
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 742 ISF YL LY R VTSL LDGR RLV II M DE F W KW L TSDA F TDFAYNM LK VI RK L NG V V IF ATQS LDEVVKNK IA RAAM E VTE T S I W 821
Cdd:TIGR00929 614 VLM YL FH R INEA LDGR PFL II I DE A W QY L GNPV F AAKIRDW LK TL RK A NG I V VL ATQS INDALGSR IA DSIL E QCA T K I F 693
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 822 MA NP D AD YD DY V E KA K VDPAH F NII K TLDPG SR Q FL V vksal RR G EV kkf AALVKFD L SA M GD YL KI LS AGEP N L EI F D E 901
Cdd:TIGR00929 694 LP NP E AD RE DY A E GF K LTERE F ELL K STPEE SR K FL I ----- KQ G QS --- SVVAELN L GG M DN YL RV LS SDTE N V EI I D A 765
810
....*....|....*....
gi 1319952606 902 IW - RP G MK P E DW IDRYLER 919
Cdd:TIGR00929 766 LI k EY G DD P D DW LPIFYRA 784
VirB4
COG3451 Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and ...
337-904
1.44e-134
Type IV secretory pathway, VirB4 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442674 [Multi-domain]
Cd Length: 546
Bit Score: 413.96
E-value: 1.44e-134
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 337 K R FF R CIE IK NL P GNVDV G G LD A LL FEQA E YVT TQSFT CMS K T EAL ETI K S K GKA L N S AQ -------- DDA V S EQV D LDV 408
Cdd:COG3451 7 D R YG R VLS IK GY P SETSP G L LD P LL QLPC E FIV TQSFT PLD K D EAL KKL K R K RRR L E S KR kseqalvd DDA E S QAE D AEE 86
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 409 LR D MIT SG DVSV G KW H YSFVLY AD S L DQ L VRDSNDIRAT L TDL G MIVTLAQIALPA AF FAQ LPGN YNL R P R CVPISSQ N F 488
Cdd:COG3451 87 AL D ELQ SG GERL G EV H LTLTVF AD D L EE L EEAVREVESA L QSA G FTLVRETLNQEE AF LSS LPGN FDY R L R RRLLTTS N L 166
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 489 A DMTA FHS VYG G K rdrl PWG ea MLM L D T E S RDAYYLNL H qslledddf NRQRL GN AK I I G TA G A GK TM LL DM L AYAMQK Y 568
Cdd:COG3451 167 A ALFP FHS FEL G D ---- PWG -- IYL L N T R S GTPVFFDF H --------- DGLDN GN TL I L G PS G S GK SF LL KL L LLQLLR Y 231
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 569 RNH atfspaakskrlt T V F FD KDRGA E VAI RALGG E Y YRIRA G ESS G W NPF A LE S T RRN R K F VKD L MK L IVT R R G Q PL SD 648
Cdd:COG3451 232 GAR ------------- I V I FD PGGSY E ILV RALGG T Y IDLSP G SPT G L NPF D LE D T EEK R D F LLE L LE L LLG R E G E PL TP 298
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 649 RQEDDLFQ AV DDVMDMPLTQRQYGITQ L LSY L N E PT tv EA QE ng L RI RL KQWKQ GG EF GW V FD NE a DTF D VRNVDNFGI D 728
Cdd:COG3451 299 EERAAIDR AV RALYRRADPEERTTLSD L YEL L K E QP -- EA KD -- L AA RL EPYTK GG SY GW L FD GP - TNL D LSDARFVVF D 373
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 729 G TE F LD DADT R AAISF YLL Y R VTSL L ---- DGR RLV I IM DE F W KW L TSD AF TD F AYNM LK VI RK L NG V VIFATQS LDEVV 804
Cdd:COG3451 374 L TE L LD NPEL R PPVLL YLL H R IWNR L rknn DGR PTL I VI DE A W LL L DNP AF AE F LEEW LK TL RK Y NG A VIFATQS VEDFL 453
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 805 KNK IA R A AM E VTE T S I WMAN P D AD YD DY V E KAKVDPAHFNI I KTLDP G S R Q FL vvksa LRR G EVKKF aalvk F D L SAMGD 884
Cdd:COG3451 454 SSP IA E A II E NSA T K I LLPQ P K AD IE DY A E LLGLSERELEL I RSAGR G K R D FL ----- IKQ G NGSVV ----- F R L DLSPE 523
570 580
....*....|....*....|
gi 1319952606 885 Y L KI LS AGEPNLE I F DE IWR 904
Cdd:COG3451 524 E L AL LS TKPEEVA I L DE LRA 543
PRK13898
PRK13898 type IV secretion system ATPase VirB4; Provisional
111-920
3.35e-94
type IV secretion system ATPase VirB4; Provisional
Pssm-ID: 172418
Cd Length: 800
Bit Score: 315.17
E-value: 3.35e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 111 KLNQRQPVEE FIPY ST H IHPFICK TK RVDYVASWE L Q G E AF QCQTA E A L ELLSEQF N KA L V S F S GETVTF Y V HTIR EK -- 188
Cdd:PRK13898 13 RSKRERHTSH FIPY KC H WNSSTIL TK DNSLLKVIK L S G F AF ETADD E D L DIQKNIR N QL L K S M S SGSFGL Y F HTIR RR ka 92
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 189 - YF D R F NS V S - G N K FA DK V MERYYNDMGQTPFYR N RIFF T VCYI P FNREEKLERKAKGRAY Q QKSQDEAIVR M N E IR E TV 266
Cdd:PRK13898 93 v FS D D F PT V K v P N D FA TY V NVEWRKKHATKQSFF N ELYI T ILRK P DTKGVEILEYFLKKLR Q KSNKEAWEND M K E MY E NL 172
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 267 E G M ------- LR H Y R P VP LG LIEEGKK V YSSL L S F FNYLIS - G QWQK --- IRV G N I PF Y nv L GSSD L Y F S S DSGQ A NQFD 335
Cdd:PRK13898 173 E E M tnrvvts LR N Y G P RL LG VRQTPSG V FCEI L E F LSSIVN c G DSPG pva LPR G T I DE Y -- L PTHR L F F G S KTIE A VSHN 250
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 336 RKRFFRC I E IK NLPG N VDV G G LD AL L FEQA E YVT TQSF TCMSKTE A LETIKSKGKALNSAQ D D AVS EQVDLDVLR D MI TS 415
Cdd:PRK13898 251 ESKYAGI I S IK EYGP N TSA G M LD GF L QLPY E FII TQSF QFTNRQV A IGKMQLQQNRMIQSG D K AVS QIAEISTAL D DA TS 330
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 416 GD VSV G KW H YSFVLYADSLDQ L VRDSNDIRAT L TDL G MIVTLAQIA L PA AF F AQLPGN YNLRP R CVP IS SQ N F A DMTAF H 495
Cdd:PRK13898 331 GD IAF G EH H LTILCIEKNIKA L ENALSLAEVE L SNC G VYPVREKVN L EP AF W AQLPGN FDYIV R KAT IS TL N M A GFASQ H 410
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 496 SVYG GK RDRLP WGEA MLML DT E S RDAY Y L N L H qsl LE D ddfnrqr L G NAK IIG TA GAGKT M L LDM L AYAMQ K yrnhat FS 575
Cdd:PRK13898 411 NYPL GK KFDNH WGEA VTVF DT T S GTPF Y F N F H --- VR D ------- V G HTL IIG PT GAGKT V L MNF L CAQAM K ------ FS 474
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 576 P aakskrl TTV FFDKDRGAE VA IRAL G G E Y YR I RAGESSGW NP FA L ES T RR NR K F VKDLM K LI VT RR G QP L SDRQEDDLF 655
Cdd:PRK13898 475 P ------- RMF FFDKDRGAE IF IRAL N G V Y TV I EPRLKCNF NP LQ L DD T SE NR T F LMEWL K VL VT SN G ES L TAQDIKRIN 547
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 656 Q AV DD vm DMP L TQRQYGITQ L LSY L NEPT tveaq E N G L RI R LKQ W KQG G EFGWV FDNE A D TF D VRNVDN FG IDGT E F L D D 735
Cdd:PRK13898 548 D AV EG -- NFK L KKEDRRLSN L VAF L GIDG ----- P N T L AG R IAM W HGK G SHAAI FDNE E D LL D FQKARV FG FEMG E L L K D 620
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 736 ADTR A AISF YL LY R VTSL LDG RRLV I IM DE F W KWLTSDA F TDFAYNM LKV I RKLN GV VIFATQS LDEVV K NK I ARAAMEV 815
Cdd:PRK13898 621 PVSL A PVLL YL FH R ISIS LDG TPSM I VL DE A W ALIDNPV F APKIKDW LKV L RKLN TF VIFATQS VEDAS K SA I SDTLVQQ 700
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 816 T E T S I WMA N PD A D y D D Y VEKAKVDPAHFNI IK TL DP GS R Q FL v V K SALR rgevkkf A ALVKFD L SA M G D YLKI LS AGEPN 895
Cdd:PRK13898 701 T A T Q I FLP N LK A T - D I Y RSVFMLSEREYIL IK HT DP TT R F FL - I K QGVS ------- A VVARIN L DG M D D IISV LS GRAET 771
810 820
....*....|....*....|....*.
gi 1319952606 896 LEIF D E I WRP - G MK P ED W IDRYL E RA 920
Cdd:PRK13898 772 VLLL D Q I REE v G DD P NK W LPIFY E AV 797
PRK13853
PRK13853 type IV secretion system protein VirB4; Provisional
119-919
2.50e-80
type IV secretion system protein VirB4; Provisional
Pssm-ID: 139913 [Multi-domain]
Cd Length: 789
Bit Score: 276.74
E-value: 2.50e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 119 E EFI PY ST H IHPF I CKTKRVDYVASWELQ G EA F QCQTA E ALELLSEQ FN KA L VSFSGET V TF Y V H TI R E kyfdrf N S V SG 198
Cdd:PRK13853 13 E IYL PY VG H LSDH I VLLEDGSIMTMAHIS G LP F ELEEV E MRNARCRA FN TL L RNIADDN V SI Y A H LV R H ------ N D V PP 86
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 199 ------- NK FA DKVM E RYYNDMGQTPFY RN RI F F T VCYI P FNREE K LE R KAKG R a Y QQ K SQ D -- EA I VRMNEIRET V E G M 269
Cdd:PRK13853 87 pparhfr SA FA ASLS E AFEERVLSGKLL RN DH F L T LIVS P RTALG K VK R RFTK R - Y GK K EN D la GQ I RNLEDLWHV V A G A 165
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 270 L RH Y RPVP LG LI E EGKKVYSSLLSFFNYLIS G QWQKIR V GNIP fynv LG S S --- D LYFSSDS G QANQFDRKRFFRC I - EI 345
Cdd:PRK13853 166 L DA Y GLRR LG IR E KQQVLFTEIGEALRLIMT G RFTPVP V VSGS ---- LG A S iyt D RVICGKR G LEIRTPKDSYVGS I f SF 241
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 346 KNL P GNVDV G G L DA LL FEQAEY V T TQSF TCMSKTE A LETIKS K GKALN S AQ D D AV SEQVD L DVLR D MIT S GDVSV G KW H Y 425
Cdd:PRK13853 242 REY P AKTRP G M L NT LL SLDFPL V L TQSF SFLTRAQ A HAKLSL K SSQMT S SG D K AV TQISE L AEAE D ALA S NEFVM G SH H L 321
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 426 S FVL YAD S L DQ L VRDSNDI R AT L T D L G MI V TLAQ I ALP AA FFA QLPGN YNL R P R CVP I S S Q NFA DMTA F HSVYG G K R DR l 505
Cdd:PRK13853 322 S LCV YAD D L NS L ADRGARA R TR L A D A G AV V VQEG I GME AA YWS QLPGN HKW R T R PGA I T S R NFA GLVS F ENFPE G A R SG - 400
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 506 P WG E A MLMLD T ESRDAYYLNL H qsll E D D dfnrqr L G NAK I I G TA G A GKT M L LD - M LA YAM Q KYRNH A T fspaakskrl T 584
Cdd:PRK13853 401 H WG N A IARFR T NGGTPFDYIP H ---- E H D ------ V G MTA I F G PI G R GKT T L MT f I LA MLE Q SMVDR A G ---------- A 460
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 585 T VFFDKDRG A E VAI RA L GG E Y YRI R A G ES SG WN P F - A LE S T RRN R K F VKDLMKLIVTRR G Q - PL S DRQEDD L FQAVDDVM 662
Cdd:PRK13853 461 V VFFDKDRG G E LLV RA T GG T Y LAL R R G VP SG LA P L r G LE N T AAS R D F LREWIVALIESD G R g GI S PEENRR L VRGIQRQL 540
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 663 DM - P LTQRQY G ITQL L sy L NE P T tveaqe N G LRI RL KQ W KQ G GEF GW V FD N E A D tf D V R - NVDNF G I D G T EF L DDADTR A 740
Cdd:PRK13853 541 SF d P NMRSLA G LREF L -- L HG P A ------ E G AGA RL QR W CR G NAL GW A FD G E V D -- E V K l DPSIT G F D M T HL L EYEEVC A 610
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 741 AISF YLL Y R VTSLL DGRR L V IIM DEF WKW L TSDA F TDFAYNM L KVI RK L NG VV I F ATQ SLDE V VKNKIARAAMEVTE T S I 820
Cdd:PRK13853 611 PAAA YLL H R IGAMV DGRR F V MSC DEF RAY L LNPK F AAVVDKF L LTV RK N NG ML I L ATQ QPEH V LESPLGASLVAQCM T K I 690
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 821 WMAN P D AD YDD Y VEKA K VDPAH F NI I KT - LDP GSR Q FL vvksa L R R gev KKFAALVK FDL SA M GD Y LKI LS a G EP N LEI F 899
Cdd:PRK13853 691 FYPS P T AD RSA Y IDGL K CTEKE F QA I RE d MAV GSR K FL ----- L K R --- ESGSVICE FDL RD M RE Y VAV LS - G RA N TVR F 761
810 820
....*....|....*....|..
gi 1319952606 900 DEIW R P -- G MK P ED W IDRYLE R 919
Cdd:PRK13853 762 ADQL R E th G DD P SA W LSEFMA R 783
CagE_TrbE_VirB
pfam03135 CagE, TrbE, VirB family, component of type IV transporter system; This family includes the ...
278-479
2.77e-32
CagE, TrbE, VirB family, component of type IV transporter system; This family includes the Helicobacter pylori protein CagE, which together with other proteins from the cag pathogenicity island (PAI), encodes a type IV transporter secretion system. The precise role of CagE is not known, but studies in animal models have shown that it is essential for pathogenesis in Helicobacter pylori induced gastritis and peptic ulceration. Indeed, the expression of the cag PAI has been shown to be essential for stimulating human gastric epithelial cell apoptosis in vitro. Similar type IV transport systems are also found in other bacteria. This family includes the TrbE and VirB proteins from the respective trb and Vir conjugal transfer systems in Agrobacterium tumefaciens. homologs of VirB proteins from other species are also members of this family, e.g. VirB from Brucella suis.
Pssm-ID: 367350 [Multi-domain]
Cd Length: 202
Bit Score: 124.38
E-value: 2.77e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 278 L GLIEEGKKV YS S LL S F F N Y LI S G QWQKI R VGNIPFY - NVL G S S DLY F SS D SGQANQFDRKRFFRC I E IK NL P GNVDV G G 356
Cdd:pfam03135 1 L SEYGKRGVI YS E LL E F Y N F LI N G ENHPV R LPRGMYL d EYI G T S RVP F GK D KFIIRTAKDEKYPSI I S IK EY P PETRS G L 80
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 357 LD AL L FEQA E YVT TQSF TCMS K TE AL ETI K SKGKA L n S AQ DDA V S EQVD L DVLR D MIT SGD VSV G KW H Y S F VL Y A DSLDQ 436
Cdd:pfam03135 81 LD KF L DLDE E LII TQSF SFKN K QK AL SFL K FTSRK L - S IS DDA K S QIME L EDAI D EVR SGD FAL G LY H N S L VL F A EDKEK 159
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1319952606 437 L VRDSNDIRAT L TDL G MIVTLAQ I ALPA AFF A QLPGN YN L RP R 479
Cdd:pfam03135 160 L DASVSEATSL L NAK G FVAVIET I GMEP AFF S QLPGN IR L NF R 202
PRK13891
PRK13891 conjugal transfer protein TrbE; Provisional
140-865
6.34e-30
conjugal transfer protein TrbE; Provisional
Pssm-ID: 184375 [Multi-domain]
Cd Length: 852
Bit Score: 127.56
E-value: 6.34e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 140 YV A S W ELQ G EAFQCQ T A E AL E LL S EQF N K AL VSF - SG ET V tf Y V HTI R E --- K Y FD R fnsv SGNK F A D K V ME ------- R 208
Cdd:PRK13891 65 FM A A W LYK G DDNASS T D E QR E MV S FRI N Q AL AGL g SG WM V -- H V DAV R R pap N Y SE R ---- GVSH F P D P V SA aideerr R 138
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 209 YYNDM G Q tp F Y RNRIFF T VCYI P ------------ F NRE - EKLER KA KGRAYQQKSQD E AIVRMNEIRET V EGM - LR HYR 274
Cdd:PRK13891 139 LFEGL G T -- M Y EGYFVL T LTWF P pvlaqrkfvelm F DDD a VAPDH KA RTHGLIEQFKR E ITSLESRLSSA V KLT r LR GQK 216
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 275 P V plgl I E E G KK V - YSSL LS FFNYLIS G QWQKIRVGNI P F Y -- NVL G SSD L Y fssd S G QANQFD RK r F FRCIE I KNL P GN 351
Cdd:PRK13891 217 V V ---- N E D G RE V t HDDF LS WLQFCVT G LNHPVMLPSN P M Y ld ALI G GQE L W ---- G G VVPKIG RK - F IQVVA I EGF P LE 287
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 352 VDV G G L D AL LFEQA EY VTTQS F TC M SKT EA --- L ETIKS K G K A ------------- LN S AQD DA V S EQV D LDVLRDMIT S 415
Cdd:PRK13891 288 SYP G I L S AL AELPI EY RWSSR F IF M DQH EA vkh L DKFRK K W K Q kirgffdqvfntn TG S IDQ DA L S MVG D AEAAIAEVN S 367
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 416 G D V SV G KWHYSF VL YADSLDQ L VRDSNDIRATLTD LG MIVTLAQ I ALPA A FFAQ LPG NYNLRP R CVP I SSQ N F AD MTAFH 495
Cdd:PRK13891 368 G L V AQ G YYTSVV VL MDEDRER L EASALLVEKAINR LG FAARIET I NTMD A YLGS LPG HGVENV R RPL I NTM N L AD LLPTS 447
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 496 S VYG G KRDR ----- L P WGE A MLMLD T ESRDAYY LNLH qsl LE D ddfnrqr LG NAKII G TA GAGK TML L DML A YAMQK Y RN 570
Cdd:PRK13891 448 S IWT G SATA pcpmy P P LSP A LMHCV T VGATPFR LNLH --- VR D ------- LG HTFMF G PT GAGK STH L GII A AQLRR Y AG 517
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 571 HATFS paakskrlttvf FDK DR ------- G AEV A IRALG G EYYRIR A GESS - GWN P FALES T RRN R KFVKDLMKL I VTRR 642
Cdd:PRK13891 518 MSIYA ------------ FDK GM smyplaa G IRA A TKGKS G LHFTVA A DDDR l AFC P LQFLE T KGD R AWAMEWIDT I LALN 585
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 643 G QPLSDR Q EDDLFQ A V ddv M D M PLTQ rqygi TQL LS YL nept T V EA Q ENGL R IRL KQ WKQG G EF G WVF D N E A D TFDVRNV 722
Cdd:PRK13891 586 G VNTTPA Q RNEIGN A I --- M S M HASG ----- ART LS EF ---- S V TI Q DEAI R EAI KQ YTVD G SM G HLL D A E E D GLSLSDF 653
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 723 DN F G I D gt E FLDDADTR A - AISF YL LY R VTSL L D G RRL VII M DE F W KW L TSD AF TDFAYNM LKV I RK L N GV V IF ATQSL D 801
Cdd:PRK13891 654 TV F E I E -- E LMNLGEKF A l PVLL YL FR R IERA L K G QPA VII L DE A W LM L GHP AF RAKIREW LKV L RK A N CL V LM ATQSL S 731
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1319952606 802 EVVKNK I ARAAM E V T E T S I WMA N P --- D A D YDDYVEKAKVDPAHFN I IK T LD P g S RQ FLV V KSAL RR 865
Cdd:PRK13891 732 DAANSG I LDVIV E S T A T K I FLP N V yar D E D TSALYRRMGLNARQIE I LA T AI P - K RQ YYY V SENG RR 797
PRK13873
PRK13873 conjugal transfer ATPase TrbE; Provisional
465-827
2.71e-29
conjugal transfer ATPase TrbE; Provisional
Pssm-ID: 237536 [Multi-domain]
Cd Length: 811
Bit Score: 125.41
E-value: 2.71e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 465 A FFAQ LPG N - Y - N L R - P rcv P I S SQ N F A D M TAFHS V YG G - K R DRLPWGEAM L MLD TE SRDAYY L N LH Q sll E D ddfnrqr 540
Cdd:PRK13873 374 A WLGS LPG H v Y a N V R q P --- P V S TL N L A H M MPLSA V WA G p E R NEHLDAPPL L YAR TE GSTPFR L S LH V --- G D ------- 440
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 541 L G NAKII G TA GAGK TM LL DML A YAMQK Y RNHAT F spaakskrlttv F FD KDRGAEV A IR A L GG EYYRIRA G ESS gwn PF A 620
Cdd:PRK13873 441 V G HTLVV G PT GAGK SV LL ALM A LQFRR Y PGAQV F ------------ A FD FGGSIRA A TL A M GG DWHDLGG G ADG --- SV A 505
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 621 L ESTR R ----- N R KFVKDLMKL I VT R R G QPLSDRQEDDLFQ A VDDVMDM P LTQ R Q yg I T Q L lsylnept T V EA Q E N G L RI 695
Cdd:PRK13873 506 L QPLA R iddea E R AWAAEWIAG I LA R E G VAVTPEVKEHIWS A LTSLASA P VEE R T -- L T G L -------- S V LL Q S N A L KQ 575
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 696 R L KQWKQ GG EF G WVF D NE A DTFDVRN V DN F GID G T efldd AD T R AA IS --- F YL LY R VTSLL DGR RLVI I M DE F W KW L TS 772
Cdd:PRK13873 576 A L APYCL GG PH G RLL D AD A ERLGSAD V QA F EME G L ----- MG T K AA AP avl S YL FH R IEDRF DGR PTLL I L DE A W LF L DD 650
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1319952606 773 DA F TDFAYNM LK VI RK L N GV VIFATQSL DEVVKNK IA R A AM E VTE T S I WMA N PD A 827
Cdd:PRK13873 651 PV F AAQLREW LK TL RK K N VS VIFATQSL ADIDGSA IA P A II E SCP T R I FLP N ER A 705
PRK13830
PRK13830 conjugal transfer protein TrbE; Provisional
245-865
5.10e-27
conjugal transfer protein TrbE; Provisional
Pssm-ID: 237525 [Multi-domain]
Cd Length: 818
Bit Score: 118.41
E-value: 5.10e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 245 R AYQ Q KSQDEAIV R MN E I RETVE - G ML R HY R pvplglieegkkv Y SS L LS F FNYL I S G QWQKI R VGN IP F Y - NV L GSSD L 322
Cdd:PRK13830 166 R EVE Q YLANVVSI R RM E T RETVE r G GF R VA R ------------- Y DE L FQ F IRFC I T G ENHPV R LPD IP M Y l DW L VTAE L 232
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 323 yfss DS G QANQFD r K RF FRCIE I KN LP GNVDV G G L DA L LFEQAE Y VTTQS F TCMSKT EA --- LE TIKS K GKALNSAQD D A 399
Cdd:PRK13830 233 ---- QH G LTPKVE - N RF LGVVA I DG LP AESWP G I L NS L DLMPLT Y RWSSR F IFLDAE EA rqk LE RTRK K WQQKVRPFF D Q 307
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 400 V ---- S EQ VD L D VL ------ R D M I --- T S GD V SV G KWHYSF VL YADSLDQ L VRDSND IR ATLTDL G MIVTLAQIALPA AF 466
Cdd:PRK13830 308 L fqtq S RS VD Q D AM mmvaet E D A I aqa S S QL V AY G YYTPVI VL FDEDQER L QEKAEA IR RLIQAE G FGARIETLNATD AF 387
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 467 FAQ LPGN YNLRP R CVP I SSQ N F AD MTAFH SV YG G KRDR ---- L P WGEAM LM LDTESRDAYY LNLH Q slled DD fnrqr L G 542
Cdd:PRK13830 388 LGS LPGN WYANI R EPL I NTR N L AD LIPLN SV WS G SPVA pcpf Y P PNSPP LM QVASGSTPFR LNLH V ----- DD ----- V G 457
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 543 NAK I I G TA G A GK TM LL DML A YAMQK Y RNHAT F S paakskrlttvf FDK D R GAEVAIR A L GG EY Y R I RAGESSGWN ----- 617
Cdd:PRK13830 458 HTL I F G PT G S GK ST LL ALI A AQFRR Y AGAQI F A ------------ FDK G R SMLPLTL A A GG DH Y E I GGDAAEEGE glafc 525
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 618 P F A LE ST RRN R KFVKDLMKLI V TRR G QPLSD rqed D LFQ A VDDVMDMPLTQ R QYGITQLL S ylnept T V EAQ E ng LRIR L 697
Cdd:PRK13830 526 P L A EL ST DGD R AWAAEWIETL V ALQ G VTITP ---- D HRN A ISRQIGLMAEA R GRSLSDFV S ------ G V QMR E -- IKDA L 593
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 698 KQWKQG G EF G WVF D N E A D TFDVRNVDN F G I dgt E F L DDADT R -- AAISF YL LY R VTSL L D G RRLV II M DE F W KW L TSDA F 775
Cdd:PRK13830 594 HHYTVD G PM G QLL D A E E D GLALGAFQT F E I --- E E L MNMGE R nl VPVLT YL FR R IEKR L T G APSL II L DE A W LM L GHPV F 670
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 776 T D FAYNM LKV I RK L N GV V IF ATQS LDEVVKNK I ARAAM E VTE T S I WMA N PD A --- DYDDYV E KAKVDPAHFN I IK T LD P g 852
Cdd:PRK13830 671 R D KIREW LKV L RK A N CA V VL ATQS ISDAERSG I IDVLK E SCP T K I CLP N GA A rep GTREFY E RIGFNERQIE I VA T AI P - 749
650
....*....|...
gi 1319952606 853 S R QFL V VKSAL RR 865
Cdd:PRK13830 750 K R EYY V ASPEG RR 762
VirB3
COG3702 Type IV secretory pathway, VirB3 component [Intracellular trafficking, secretion, and ...
1-102
3.74e-21
Type IV secretory pathway, VirB3 component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 442916
Cd Length: 97
Bit Score: 88.78
E-value: 3.74e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 1 MATVY K A LTRP TLLR GVP IA PF M L S V IAIA I IGLIVTKW L W LL I - PA L Y F LM R R I TS RD EHV F S L MWVWWK T LGK kgmvl 79
Cdd:COG3702 2 EDPLF K G LTRP AMFL GVP LV PF V L N V MVSL I LFIWTGSL L Y LL L a IP L H F VL R L I CR RD PRF F R L LLLRLR T RPR ----- 76
90 100
....*....|....*....|...
gi 1319952606 80 S RN V at RF YKARAV S HTR Y DNID 102
Cdd:COG3702 77 T RN R -- RF WGGNSY S PLP Y RRRR 97
VirB3
pfam05101 Type IV secretory pathway, VirB3-like protein; This family includes the Type IV secretory ...
3-74
1.75e-15
Type IV secretory pathway, VirB3-like protein; This family includes the Type IV secretory pathway VirB3 protein, that is found associated with bacterial inner and outer membranes. The family also includes the conjugal transfer protein TrbD family that contains a nucleotide binding motif and may provide energy for the export of DNA or the export of other Trb proteins.
Pssm-ID: 428303
Cd Length: 82
Bit Score: 72.27
E-value: 1.75e-15
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1319952606 3 TVY KALTRP TLLR GVP IAP F M L SVIAIA I IG L IVTK - W LW LL I P A L YFLM R R I TS RD EHV F SLMWV W WK T LGK 74
Cdd:pfam05101 2 PLF KALTRP AMFL GVP LEL F L L NGMVSV I LF L VGLS l W YL LL A P P L HLVL R L I AK RD PRM F RVLLL W LQ T RPR 74
PRK13854
PRK13854 type IV secretion system protein VirB3; Provisional
2-74
1.02e-05
type IV secretion system protein VirB3; Provisional
Pssm-ID: 139914
Cd Length: 108
Bit Score: 45.20
E-value: 1.02e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1319952606 2 AT V Y K A L TRP T L LR GVP IA pfm L SVIAIAII G LIVTK ----- WLWL L I P a L Y F LM R RITS RD EHVF S LMWVWWK T L G K 74
Cdd:PRK13854 8 AT L Y L A A TRP A L FL GVP LT --- L AGVFMMLA G FVIVI vqnpl YEVV L L P - L W F GA R LVVE RD YNAA S VVLLFLR T A G R 81
HerA
COG0433 Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase ...
546-879
3.01e-05
Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains [Replication, recombination and repair];
Pssm-ID: 440202 [Multi-domain]
Cd Length: 388
Bit Score: 47.29
E-value: 3.01e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 546 I I G TA G A GK TML L DM L AYAMQK yrnhatfspaaks KRLTTVF FD ------ KDRGAEVAIRAL G ge YYRIR AG ESSGW NP F 619
Cdd:COG0433 52 I L G AT G S GK SNT L QV L LEELSR ------------- AGVPVLV FD phgeys GLAEPGAERADV G -- VFDPG AG RPLPI NP W 116
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 620 A L ES T rrnrkf VKD L MK L IVT R R gq P L S D R Q EDD L FQ A VDDVM D MP L tq RQYGITQ L LSY L N E PTTVEAQENG ------- 692
Cdd:COG0433 117 D L FA T ------ ASE L GP L LLS R L -- D L N D T Q RGV L RE A LRLAD D KG L -- LLLDLKD L IAL L E E GEELGEEYGN vsaasag 186
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 693 - L RI RL KQWKQGGEF gwv F DNEADTFD vrnv D NFGI DG ------ TEF L DD a DTRAAISFY LL YRVTSLL -------- DGR 757
Cdd:COG0433 187 a L LR RL ESLESADGL --- F GEPGLDLE ---- D LLRT DG rvtvid LSG L PE - ELQSTFVLW LL RELFEAR pevgdadd RKL 258
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 758 R LV IIM DE FWKWL -- TSD A FTDFAYNMLKVI RK L n GV - V I F ATQ S --- L DE V V K ---- NK I A - R A ame VTETSI wmanpd 826
Cdd:COG0433 259 P LV LVI DE AHLLA pa APS A LLEILERIAREG RK F - GV g L I L ATQ R psd I DE D V L sqlg TQ I I l R L --- FNPRDQ ------ 328
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1319952606 827 adyd DY V EK A -- KVDPAHFNIIKT L DP G sr QF LV V ksalrr GE VKKFAA LVK FD L 879
Cdd:COG0433 329 ---- KA V KA A ae TLSEDLLERLPS L GT G -- EA LV L ------ GE GIPLPV LVK IR L 371
TrbD
COG5268 Type IV secretory pathway, TrbD component [Intracellular trafficking, secretion, and vesicular ...
4-62
1.34e-04
Type IV secretory pathway, TrbD component [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 444081
Cd Length: 88
Bit Score: 41.43
E-value: 1.34e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1319952606 4 V YK ALTRP T LL R G V P IAPFM L SVIAI A II GL IVTK W ----- LWL LI pal YF L MRRITS RD EHV F 62
Cdd:COG5268 13 V HR ALTRP I LL G G A P RELAI L NGTLA A AL GL GLQL W ivgla LWL VG --- HA L AVWMAK RD PQF F 73
PRK13721
PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
543-812
3.21e-03
conjugal transfer ATP-binding protein TraC; Provisional
Pssm-ID: 237480 [Multi-domain]
Cd Length: 844
Bit Score: 41.25
E-value: 3.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 543 N AKII GT A GAGKT M L LDM L aya MQKYRNHAT F S paakskrltt V F FD KDR G AEVAIRAL GG E Y YR ira GE SSGW NPFA - L 621
Cdd:PRK13721 451 N MAVC GT S GAGKT G L IQP L --- IRSVLDSGG F A ---------- V V FD MGD G YKSLCENM GG V Y LD --- GE TLRF NPFA n I 514
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 622 ESTRRNRKFVK D LMKLIVTRR G q P L SDRQ E DD L F QAV ------------- DDV --- MDMPLTQR QY G itqllsyln EPT T 685
Cdd:PRK13721 515 TDIDQSAERIR D QLSVMASPN G - N L DEVH E GL L L QAV raswlakknrari DDV vdf LKNARDSE QY A --------- DSP T 584
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1319952606 686 VEAQENGLRIR L K Q WKQG G EF G WV F DNEADTFD vrnvdnfgi D GTEFL -------- D DADTRA A IS F Y L ------- L YR v 750
Cdd:PRK13721 585 IRSRLDEMIVL L D Q YTAN G TY G EY F NSDEPSLR --------- D DARMV vlelggle D RPSLLV A VM F S L iiyienr M YR - 654
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1319952606 751 t SLLDGRR L VI I m DE F W KW L -- TSDAFTD F AYNMLKVI R KLN G VV I FA TQ SLDEVVKN K --- I ARAA 812
Cdd:PRK13721 655 - TPRNLKK L NV I - DE G W RL L df KNHKVGE F IEKGYRTA R RHT G AY I TI TQ NIVDFDSD K ass A ARAA 719
P-loop_TraG
pfam19044 TraG P-loop domain; This entry represents the P-loop domain found in the TraG conjugation ...
754-812
3.55e-03
TraG P-loop domain; This entry represents the P-loop domain found in the TraG conjugation protein.
Pssm-ID: 436917 [Multi-domain]
Cd Length: 413
Bit Score: 40.97
E-value: 3.55e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1319952606 754 L D G R R LV I IMD E F WK WLTSDAFTDFAYNML K VI RK LN G VV I FA TQ SL D EVVKNK I ARA A 812
Cdd:pfam19044 247 L K G I R KM I LIE E A WK AIAKEGMAEYIKYLF K TV RK FF G EA I VV TQ EV D DIISSP I VKD A 305
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
