|
Name |
Accession |
Description |
Interval |
E-value |
| rsmD |
PRK10909 |
16S rRNA m(2)G966-methyltransferase; Provisional |
12-200 |
5.38e-98 |
|
16S rRNA m(2)G966-methyltransferase; Provisional
Pssm-ID: 236793 Cd Length: 199 Bit Score: 282.38 E-value: 5.38e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 12 KKP---SGGFVRIISGSWRGRKLPVHDLEGLRPTIDRVKETLFNWVAQDIPHSTCLDVFAGSGGLGFEAASRQAKLVTLL 88
Cdd:PRK10909 3 KKPnhsGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 89 EMNQKAAKQLADNAKELKADNINVVNTDAISFLKKPGTPYDMVFLDPPFRKGLLAETVELLESNGWLADNAIIYVETEKE 168
Cdd:PRK10909 83 EMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVE 162
|
170 180 190
....*....|....*....|....*....|..
gi 1327149777 169 LQLEAMPENWELHRDKTTGQSSYRLFNRTTEE 200
Cdd:PRK10909 163 NGLPTVPANWQLHREKVAGQVAYRLYIREAQG 194
|
|
| RsmD |
COG0742 |
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA ... |
19-199 |
1.06e-91 |
|
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA G966 N2-methylase RsmD is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 440505 [Multi-domain] Cd Length: 183 Bit Score: 265.79 E-value: 1.06e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 19 VRIISGSWRGRKLPVHDLEGLRPTIDRVKETLFNWVAQDIPHSTCLDVFAGSGGLGFEAASRQAKLVTLLEMNQKAAKQL 98
Cdd:COG0742 1 MRIIGGKARGRKLKVPKGPGTRPTTDRVREALFNILGPDIEGARVLDLFAGSGALGLEALSRGAASVVFVEKDRKAAAVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 99 ADNAKELKA-DNINVVNTDAISFLKK-PGTPYDMVFLDPPFRKGLLAETVELLESNGWLADNAIIYVETEKELQLEAMPE 176
Cdd:COG0742 81 RKNLEKLGLeDRARVIRGDALRFLKRlAGEPFDLVFLDPPYAKGLLEKALELLAENGLLAPGGLIVVEHSKREELPELPA 160
|
170 180
....*....|....*....|...
gi 1327149777 177 NWELHRDKTTGQSSYRLFNRTTE 199
Cdd:COG0742 161 GLELLKERKYGDTRLSFYRREEE 183
|
|
| Cons_hypoth95 |
pfam03602 |
Conserved hypothetical protein 95; |
19-194 |
3.39e-83 |
|
Conserved hypothetical protein 95;
Pssm-ID: 427391 [Multi-domain] Cd Length: 179 Bit Score: 244.07 E-value: 3.39e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 19 VRIISGSWRGRKLPVHDLEGLRPTIDRVKETLFNWVAQDIPHSTCLDVFAGSGGLGFEAASRQAKLVTLLEMNQKAAKQL 98
Cdd:pfam03602 1 MRIIGGKARGRKLKVPPGPGTRPTTDRVREALFNWLAPYIEGARVLDLFAGSGALGLEALSRGAKRVTLVEKDKRAVQIL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 99 ADNAKELKADNINVVNTDAISFLKKPGT--PYDMVFLDPPFRKGLLAETVELLESNGWLADNAIIYVETEKELQLEAMPE 176
Cdd:pfam03602 81 KENLQLLGLPGAVLVMDALLALLRLAGKgpVFDIVFLDPPYAKGLIEEVLDLLAEKGWLKPNALIYVETEKRGELPEQPG 160
|
170
....*....|....*...
gi 1327149777 177 NWELHRDKTTGQSSYRLF 194
Cdd:pfam03602 161 NLELVREKKYGQTTLAFY 178
|
|
| TIGR00095 |
TIGR00095 |
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of ... |
13-194 |
3.79e-71 |
|
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 188022 [Multi-domain] Cd Length: 190 Bit Score: 214.20 E-value: 3.79e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 13 KPSGGFvRIISGSWRGRKLPVHDLEGLRPTIDRVKETLFNWVAQDIPHSTCLDVFAGSGGLGFEAASRQAKLVTLLEMNQ 92
Cdd:TIGR00095 5 SGSGKI-RIIGGQYRGRKLKVPPGPSTRPTTDRVRESLFNILRPDIVGAHFLDLFAGSGALGLEALSRGAASAVFVEQDR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 93 KAAKQLADNAKELKADNIN--VVNTD--AISFLKKPGTPYDMVFLDPPFRKGLLAETVELLESNGWLADNAIIYVETEKE 168
Cdd:TIGR00095 84 KVAQTLKENLSTLKKSGEQatVLNDAvrALLFLAKKQTPFDIIYLDPPFNRGLLEALLELLGENKWLNPKGLIVVEYDRE 163
|
170 180
....*....|....*....|....*.
gi 1327149777 169 LQLEAMPENWELHRDKTTGQSSYRLF 194
Cdd:TIGR00095 164 NELPTVPETWSLLRQKVYGQSALRLY 189
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
62-155 |
2.64e-17 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 73.62 E-value: 2.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 62 TCLDVFAGSGGLGFEAASRQAKLVTLLEMNQKAAKQLADNAKELKADNINVVNTDAISFLKKPGTPYDMVFLDPPF---- 137
Cdd:cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLhhlv 80
|
90 100
....*....|....*....|
gi 1327149777 138 --RKGLLAETVELLESNGWL 155
Cdd:cd02440 81 edLARFLEEARRLLKPGGVL 100
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| rsmD |
PRK10909 |
16S rRNA m(2)G966-methyltransferase; Provisional |
12-200 |
5.38e-98 |
|
16S rRNA m(2)G966-methyltransferase; Provisional
Pssm-ID: 236793 Cd Length: 199 Bit Score: 282.38 E-value: 5.38e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 12 KKP---SGGFVRIISGSWRGRKLPVHDLEGLRPTIDRVKETLFNWVAQDIPHSTCLDVFAGSGGLGFEAASRQAKLVTLL 88
Cdd:PRK10909 3 KKPnhsGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 89 EMNQKAAKQLADNAKELKADNINVVNTDAISFLKKPGTPYDMVFLDPPFRKGLLAETVELLESNGWLADNAIIYVETEKE 168
Cdd:PRK10909 83 EMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEVE 162
|
170 180 190
....*....|....*....|....*....|..
gi 1327149777 169 LQLEAMPENWELHRDKTTGQSSYRLFNRTTEE 200
Cdd:PRK10909 163 NGLPTVPANWQLHREKVAGQVAYRLYIREAQG 194
|
|
| RsmD |
COG0742 |
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA ... |
19-199 |
1.06e-91 |
|
16S rRNA G966 N2-methylase RsmD [Translation, ribosomal structure and biogenesis]; 16S rRNA G966 N2-methylase RsmD is part of the Pathway/BioSystem: 16S rRNA modification
Pssm-ID: 440505 [Multi-domain] Cd Length: 183 Bit Score: 265.79 E-value: 1.06e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 19 VRIISGSWRGRKLPVHDLEGLRPTIDRVKETLFNWVAQDIPHSTCLDVFAGSGGLGFEAASRQAKLVTLLEMNQKAAKQL 98
Cdd:COG0742 1 MRIIGGKARGRKLKVPKGPGTRPTTDRVREALFNILGPDIEGARVLDLFAGSGALGLEALSRGAASVVFVEKDRKAAAVI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 99 ADNAKELKA-DNINVVNTDAISFLKK-PGTPYDMVFLDPPFRKGLLAETVELLESNGWLADNAIIYVETEKELQLEAMPE 176
Cdd:COG0742 81 RKNLEKLGLeDRARVIRGDALRFLKRlAGEPFDLVFLDPPYAKGLLEKALELLAENGLLAPGGLIVVEHSKREELPELPA 160
|
170 180
....*....|....*....|...
gi 1327149777 177 NWELHRDKTTGQSSYRLFNRTTE 199
Cdd:COG0742 161 GLELLKERKYGDTRLSFYRREEE 183
|
|
| Cons_hypoth95 |
pfam03602 |
Conserved hypothetical protein 95; |
19-194 |
3.39e-83 |
|
Conserved hypothetical protein 95;
Pssm-ID: 427391 [Multi-domain] Cd Length: 179 Bit Score: 244.07 E-value: 3.39e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 19 VRIISGSWRGRKLPVHDLEGLRPTIDRVKETLFNWVAQDIPHSTCLDVFAGSGGLGFEAASRQAKLVTLLEMNQKAAKQL 98
Cdd:pfam03602 1 MRIIGGKARGRKLKVPPGPGTRPTTDRVREALFNWLAPYIEGARVLDLFAGSGALGLEALSRGAKRVTLVEKDKRAVQIL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 99 ADNAKELKADNINVVNTDAISFLKKPGT--PYDMVFLDPPFRKGLLAETVELLESNGWLADNAIIYVETEKELQLEAMPE 176
Cdd:pfam03602 81 KENLQLLGLPGAVLVMDALLALLRLAGKgpVFDIVFLDPPYAKGLIEEVLDLLAEKGWLKPNALIYVETEKRGELPEQPG 160
|
170
....*....|....*...
gi 1327149777 177 NWELHRDKTTGQSSYRLF 194
Cdd:pfam03602 161 NLELVREKKYGQTTLAFY 178
|
|
| TIGR00095 |
TIGR00095 |
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of ... |
13-194 |
3.79e-71 |
|
16S rRNA (guanine(966)-N(2))-methyltransferase RsmD; This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. [Protein synthesis, tRNA and rRNA base modification]
Pssm-ID: 188022 [Multi-domain] Cd Length: 190 Bit Score: 214.20 E-value: 3.79e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 13 KPSGGFvRIISGSWRGRKLPVHDLEGLRPTIDRVKETLFNWVAQDIPHSTCLDVFAGSGGLGFEAASRQAKLVTLLEMNQ 92
Cdd:TIGR00095 5 SGSGKI-RIIGGQYRGRKLKVPPGPSTRPTTDRVRESLFNILRPDIVGAHFLDLFAGSGALGLEALSRGAASAVFVEQDR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 93 KAAKQLADNAKELKADNIN--VVNTD--AISFLKKPGTPYDMVFLDPPFRKGLLAETVELLESNGWLADNAIIYVETEKE 168
Cdd:TIGR00095 84 KVAQTLKENLSTLKKSGEQatVLNDAvrALLFLAKKQTPFDIIYLDPPFNRGLLEALLELLGENKWLNPKGLIVVEYDRE 163
|
170 180
....*....|....*....|....*.
gi 1327149777 169 LQLEAMPENWELHRDKTTGQSSYRLF 194
Cdd:TIGR00095 164 NELPTVPETWSLLRQKVYGQSALRLY 189
|
|
| AdoMet_MTases |
cd02440 |
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ... |
62-155 |
2.64e-17 |
|
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Pssm-ID: 100107 [Multi-domain] Cd Length: 107 Bit Score: 73.62 E-value: 2.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 62 TCLDVFAGSGGLGFEAASRQAKLVTLLEMNQKAAKQLADNAKELKADNINVVNTDAISFLKKPGTPYDMVFLDPPF---- 137
Cdd:cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLhhlv 80
|
90 100
....*....|....*....|
gi 1327149777 138 --RKGLLAETVELLESNGWL 155
Cdd:cd02440 81 edLARFLEEARRLLKPGGVL 100
|
|
| RlmK |
COG1092 |
23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure ... |
62-156 |
6.05e-08 |
|
23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI [Translation, ribosomal structure and biogenesis]; 23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI is part of the Pathway/BioSystem: 23S rRNA modification
Pssm-ID: 440709 [Multi-domain] Cd Length: 392 Bit Score: 51.72 E-value: 6.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 62 TCLDVFAGSGGLGFEAASRQAKLVTLLEMNQKAAKQLADNAKELK-ADNINVVNTDAISFLK---KPGTPYDMVFLDPP- 136
Cdd:COG1092 219 RVLNLFSYTGGFSVHAAAGGAKSVTSVDLSATALEWAKENAALNGlDDRHEFVQADAFDWLRelaREGERFDLIILDPPa 298
|
90 100 110
....*....|....*....|....*....|...
gi 1327149777 137 F---RKG----------LLAETVELLESNGWLA 156
Cdd:COG1092 299 FaksKKDlfdaqrdykdLNRLALKLLAPGGILV 331
|
|
| Trm11 |
COG1041 |
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 ... |
50-156 |
1.02e-06 |
|
tRNA G10 N-methylase Trm11 [Translation, ribosomal structure and biogenesis]; tRNA G10 N-methylase Trm11 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 440663 [Multi-domain] Cd Length: 172 Bit Score: 46.87 E-value: 1.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 50 LFNwVAQDIPHSTCLDVFAGSGGLGFEAASRQAKLVtLLEMNQKAAKQLADNAKELKADNINVVNTDAiSFLKKPGTPYD 129
Cdd:COG1041 18 LVN-LAGAKEGDTVLDPFCGTGTILIEAGLLGRRVI-GSDIDPKMVEGARENLEHYGYEDADVIRGDA-RDLPLADESVD 94
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1327149777 130 MVFLDPPFR--------------KGLLAETVELLESNGWLA 156
Cdd:COG1041 95 AIVTDPPYGrsskisgeellelyEKALEEAARVLKPGGRVV 135
|
|
| CobL |
COG2242 |
Precorrin-6B methylase 2 [Coenzyme transport and metabolism]; Precorrin-6B methylase 2 is part ... |
59-180 |
6.00e-06 |
|
Precorrin-6B methylase 2 [Coenzyme transport and metabolism]; Precorrin-6B methylase 2 is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 441843 [Multi-domain] Cd Length: 403 Bit Score: 45.93 E-value: 6.00e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 59 PHSTCLDVFAGSGGLGFEAA--SRQAKlVTLLEMNQKAAKQLADNAKELKADNINVVNTDAISFLKKPGTPyDMVFL--D 134
Cdd:COG2242 247 PGDVLWDIGAGSGSVSIEAArlAPGGR-VYAIERDPERAALIRANARRFGVPNVEVVEGEAPEALADLPDP-DAVFIggS 324
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1327149777 135 PPFRKGLLAETVELLESNGWLADNAIIyVETEKEL--QLEAMPENWEL 180
Cdd:COG2242 325 GGNLPEILEACWARLRPGGRLVANAVT-LETLALAleALAELGYGGEL 371
|
|
| TrmN6 |
COG4123 |
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) ... |
34-139 |
6.52e-06 |
|
tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; tRNA1(Val) A37 N6-methylase TrmN6 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 443299 [Multi-domain] Cd Length: 238 Bit Score: 45.14 E-value: 6.52e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 34 HDLEGLRPTIDRVkeTLFNWVAQDiPHSTCLDVFAGSGGLGFEAASRQAKL-VTLLEMNQKAAKQLADNAKELK-ADNIN 111
Cdd:COG4123 15 QPRCGYRFGTDAV--LLAAFAPVK-KGGRVLDLGTGTGVIALMLAQRSPGArITGVEIQPEAAELARRNVALNGlEDRIT 91
|
90 100 110
....*....|....*....|....*....|
gi 1327149777 112 VVNTD--AISFLKKPGtPYDMVFLDPPFRK 139
Cdd:COG4123 92 VIHGDlkEFAAELPPG-SFDLVVSNPPYFK 120
|
|
| COG4076 |
COG4076 |
Predicted RNA methylase [General function prediction only]; |
55-152 |
1.09e-05 |
|
Predicted RNA methylase [General function prediction only];
Pssm-ID: 443253 [Multi-domain] Cd Length: 230 Bit Score: 44.64 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 55 AQDIPHSTCLDVFAGSGGLGFEAASRQAKLVTLLEMNQKAAKQLADNAKELK-ADNINVVNTDAISFLkkPGTPYDMV-- 131
Cdd:COG4076 31 RVVKPGDVVLDIGTGSGLLSMLAARAGAKKVYAVEVNPDIAAVARRIIAANGlSDRITVINADATDLD--LPEKADVIis 108
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 1327149777 132 ------FLDPP-------FRKGLLAE-----------TVELLESN 152
Cdd:COG4076 109 emldtaLLDEGqvpilnhARKRLLKPggriiperitnAAQPVESP 153
|
|
| SmtA |
COG0500 |
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, ... |
64-155 |
2.28e-05 |
|
SAM-dependent methyltransferase [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only];
Pssm-ID: 440266 [Multi-domain] Cd Length: 199 Bit Score: 43.37 E-value: 2.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 64 LDVFAGSGGLGFEAASRQAKLVTLLEMNQKAAKQLADNAKELKADNINVVNTDAISFLKKPGTPYDMVF-------LDPP 136
Cdd:COG0500 31 LDLGCGTGRNLLALAARFGGRVIGIDLSPEAIALARARAAKAGLGNVEFLVADLAELDPLPAESFDLVVafgvlhhLPPE 110
|
90
....*....|....*....
gi 1327149777 137 FRKGLLAETVELLESNGWL 155
Cdd:COG0500 111 EREALLRELARALKPGGVL 129
|
|
| Methyltrans_SAM |
pfam10672 |
S-adenosylmethionine-dependent methyltransferase; Members of this family are ... |
53-145 |
4.38e-05 |
|
S-adenosylmethionine-dependent methyltransferase; Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyze the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalyzed by the S-adenosylmethionine-dependent methyltransferases.
Pssm-ID: 287624 [Multi-domain] Cd Length: 286 Bit Score: 42.94 E-value: 4.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 53 WVAQDIPHSTCLDVFAGSGGLGFEAASRQAKLVTLLEMNQKAAKQLADNAKeLKADNINVVNTDAISFLK-----KPGTP 127
Cdd:pfam10672 117 WVQENAKGKNVLNLFAYTCGFSVAAIAGGASQVVNVDMARGSLNKGRDNHR-LNGHDLGRVSFLGHDIFKswgkiKKLGP 195
|
90
....*....|....*....
gi 1327149777 128 YDMVFLDPP-FRKGLLAET 145
Cdd:pfam10672 196 YDLVIIDPPsFQKGSFALT 214
|
|
| UbiG |
COG2227 |
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and ... |
48-155 |
4.96e-05 |
|
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme transport and metabolism]; 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase is part of the Pathway/BioSystem: Ubiquinone biosynthesis
Pssm-ID: 441829 [Multi-domain] Cd Length: 126 Bit Score: 41.16 E-value: 4.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 48 ETLFNWVAQDIPH-STCLDVFAGSGGLGFEAASRQAKlVTLLEMNQKAAKQLADNAKELkadNINVVNTDAISfLKKPGT 126
Cdd:COG2227 12 RRLAALLARLLPAgGRVLDVGCGTGRLALALARRGAD-VTGVDISPEALEIARERAAEL---NVDFVQGDLED-LPLEDG 86
|
90 100 110
....*....|....*....|....*....|....*..
gi 1327149777 127 PYDMVFL--------DPpfrKGLLAETVELLESNGWL 155
Cdd:COG2227 87 SFDLVICsevlehlpDP---AALLRELARLLKPGGLL 120
|
|
| MTS |
pfam05175 |
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit ... |
64-155 |
7.24e-05 |
|
Methyltransferase small domain; This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.
Pssm-ID: 428349 [Multi-domain] Cd Length: 170 Bit Score: 41.42 E-value: 7.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 64 LDVFAGSGGLGFEAASRQAKL-VTLLEMNQKAAKQLADNAKELKADNINVVNTDAISFLKKpgTPYDMVFLDPPFRKG-- 140
Cdd:pfam05175 36 LDLGCGAGVLGAALAKESPDAeLTMVDINARALESARENLAANGLENGEVVASDVYSGVED--GKFDLIISNPPFHAGla 113
|
90 100
....*....|....*....|...
gi 1327149777 141 --------LLAETVELLESNGWL 155
Cdd:pfam05175 114 ttynvaqrFIADAKRHLRPGGEL 136
|
|
| TrmR |
COG4122 |
tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; ... |
76-160 |
8.30e-05 |
|
tRNA 5-hydroxyU34 O-methylase TrmR/YrrM [Translation, ribosomal structure and biogenesis]; tRNA 5-hydroxyU34 O-methylase TrmR/YrrM is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 443298 Cd Length: 173 Bit Score: 41.32 E-value: 8.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 76 EAASRQAKLVTLlEMNQKAAKQLADNAKELK-ADNINVVNTDAISFLKK-PGTPYDMVFLD--PPFRKGLLAETVELLES 151
Cdd:COG4122 36 RALPDDGRLTTI-EIDPERAAIARENFARAGlADRIRLILGDALEVLPRlADGPFDLVFIDadKSNYPDYLELALPLLRP 114
|
90
....*....|
gi 1327149777 152 NGWL-ADNAI 160
Cdd:COG4122 115 GGLIvADNVL 124
|
|
| PRK14968 |
PRK14968 |
putative methyltransferase; Provisional |
54-137 |
1.00e-04 |
|
putative methyltransferase; Provisional
Pssm-ID: 237872 [Multi-domain] Cd Length: 188 Bit Score: 41.42 E-value: 1.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 54 VAQDIPHSTCLDVFAGSGGLGfEAASRQAKLVTLLEMNQKAAKQLADNAK--ELKADNINVVNTDAISFLKkpGTPYDMV 131
Cdd:PRK14968 18 NAVDKKGDRVLEVGTGSGIVA-IVAAKNGKKVVGVDINPYAVECAKCNAKlnNIRNNGVEVIRSDLFEPFR--GDKFDVI 94
|
....*.
gi 1327149777 132 FLDPPF 137
Cdd:PRK14968 95 LFNPPY 100
|
|
| rumB |
PRK03522 |
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC; |
52-162 |
1.23e-04 |
|
23S rRNA (uracil(747)-C(5))-methyltransferase RlmC;
Pssm-ID: 235128 [Multi-domain] Cd Length: 315 Bit Score: 41.78 E-value: 1.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 52 NWVAQDIPHSTcLDVFAGSGGLGFEAASRQAKlVTLLEMNQKA---AKQladNAKELKADNINVVNTDAISFLKKPGTPY 128
Cdd:PRK03522 167 DWVRELPPRSM-WDLFCGVGGFGLHCATPGMQ-LTGIEISAEAiacAKQ---SAAELGLTNVQFQALDSTQFATAQGEVP 241
|
90 100 110
....*....|....*....|....*....|....
gi 1327149777 129 DMVFLDPPfRKGLLAETVELLESngwLADNAIIY 162
Cdd:PRK03522 242 DLVLVNPP-RRGIGKELCDYLSQ---MAPRFILY 271
|
|
| Trm5 |
COG2520 |
tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]; tRNA G37 ... |
64-172 |
1.24e-04 |
|
tRNA G37 N-methylase Trm5 [Translation, ribosomal structure and biogenesis]; tRNA G37 N-methylase Trm5 is part of the Pathway/BioSystem: tRNA modification
Pssm-ID: 442010 [Multi-domain] Cd Length: 333 Bit Score: 41.77 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 64 LDVFAGSGGLGFEAASRQAKLVTLLEMNQKAAKQLADNAKELK-ADNINVVNTDAISFLKKPGTPYDMVFLD-PPFRKGL 141
Cdd:COG2520 185 LDMFAGVGPFSIPIAKRSGAKVVAIDINPDAVEYLKENIRLNKvEDRVTPILGDAREVAPELEGKADRIIMNlPHSADEF 264
|
90 100 110
....*....|....*....|....*....|.
gi 1327149777 142 LAETVELLESNGWLadnaIIYVETEKELQLE 172
Cdd:COG2520 265 LDAALRALKPGGVI----HYYEIVPEEDPFE 291
|
|
| Methyltransf_25 |
pfam13649 |
Methyltransferase domain; This family appears to be a methyltransferase domain. |
64-153 |
1.62e-04 |
|
Methyltransferase domain; This family appears to be a methyltransferase domain.
Pssm-ID: 463945 [Multi-domain] Cd Length: 96 Bit Score: 39.08 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 64 LDVFAGSGGLGFEAASRQAKLVTLLEMNQKAAKQLADNAKELKAdNINVVNTDAISfLKKPGTPYDMVF-------LDPP 136
Cdd:pfam13649 2 LDLGCGTGRLTLALARRGGARVTGVDLSPEMLERARERAAEAGL-NVEFVQGDAED-LPFPDGSFDLVVssgvlhhLPDP 79
|
90
....*....|....*..
gi 1327149777 137 FRKGLLAETVELLESNG 153
Cdd:pfam13649 80 DLEAALREIARVLKPGG 96
|
|
| UbiE |
COG2226 |
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; ... |
59-156 |
8.69e-04 |
|
Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG is part of the Pathway/BioSystem: Biotin biosynthesis
Pssm-ID: 441828 [Multi-domain] Cd Length: 143 Bit Score: 38.05 E-value: 8.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 59 PHSTCLDVFAGSGGLGFEAASRQAKlVTLLEMNQKAAKQLADNAKElKADNINVVNTDA--ISFlkkPGTPYDMVFL--- 133
Cdd:COG2226 22 PGARVLDLGCGTGRLALALAERGAR-VTGVDISPEMLELARERAAE-AGLNVEFVVGDAedLPF---PDGSFDLVISsfv 96
|
90 100
....*....|....*....|....*...
gi 1327149777 134 -----DPPfrkGLLAETVELLESNGWLA 156
Cdd:COG2226 97 lhhlpDPE---RALAEIARVLKPGGRLV 121
|
|
| PRK14967 |
PRK14967 |
putative methyltransferase; Provisional |
58-137 |
1.38e-03 |
|
putative methyltransferase; Provisional
Pssm-ID: 184931 [Multi-domain] Cd Length: 223 Bit Score: 38.11 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 58 IPHSTCLDVFAGSGGLGFEAASRQAKLVTLLEMNQKAAKQLADNAKeLKADNINVVNTDAISFLkkPGTPYDMVFLDPPF 137
Cdd:PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNAL-LAGVDVDVRRGDWARAV--EFRPFDVVVSNPPY 111
|
|
| COG4262 |
COG4262 |
Predicted spermidine synthase with an N-terminal membrane domain [General function prediction ... |
101-136 |
2.73e-03 |
|
Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only];
Pssm-ID: 443404 [Multi-domain] Cd Length: 426 Bit Score: 37.92 E-value: 2.73e-03
10 20 30
....*....|....*....|....*....|....*.
gi 1327149777 101 NAKELKADNINVVNTDAISFLKKPGTPYDMVFLDPP 136
Cdd:COG4262 336 NGGALNDPRVTVVNADAFQFLRETDEKYDVIIVDLP 371
|
|
| Methyltransf_31 |
pfam13847 |
Methyltransferase domain; This family appears to have methyltransferase activity. |
64-134 |
2.99e-03 |
|
Methyltransferase domain; This family appears to have methyltransferase activity.
Pssm-ID: 463998 [Multi-domain] Cd Length: 150 Bit Score: 36.63 E-value: 2.99e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1327149777 64 LDVFAGSGGLGFEAASR---QAKlVTLLEMNQKAAKQLADNAKELKADNINVVNTDAISFLK-KPGTPYDMVFLD 134
Cdd:pfam13847 8 LDLGCGTGHLSFELAEElgpNAE-VVGIDISEEAIEKARENAQKLGFDNVEFEQGDIEELPElLEDDKFDVVISN 81
|
|
| PRK08287 |
PRK08287 |
decarboxylating cobalt-precorrin-6B (C(15))-methyltransferase; |
61-113 |
3.17e-03 |
|
decarboxylating cobalt-precorrin-6B (C(15))-methyltransferase;
Pssm-ID: 181354 Cd Length: 187 Bit Score: 36.90 E-value: 3.17e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1327149777 61 STCLDVFAGSGGLGFEAASRQAKL-VTLLEMNQKAAKQLADNAKELKADNINVV 113
Cdd:PRK08287 33 KHLIDVGAGTGSVSIEAALQFPSLqVTAIERNPDALRLIKENRQRFGCGNIDII 86
|
|
| PRK04338 |
PRK04338 |
N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional |
64-145 |
3.57e-03 |
|
N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Pssm-ID: 235286 Cd Length: 382 Bit Score: 37.59 E-value: 3.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1327149777 64 LDVFAGSG--GLGFEAASRQAKlVTLLEMNQKAAKQLADNAKELKADNINVVNTDAISFLKKPGtPYDMVFLDP-----P 136
Cdd:PRK04338 62 LDALSASGirGIRYALETGVEK-VTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEER-KFDVVDIDPfgspaP 139
|
90
....*....|....*...
gi 1327149777 137 F---------RKGLLAET 145
Cdd:PRK04338 140 FldsairsvkRGGLLCVT 157
|
|
| |
