NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1332095515|gb|PNK92872|]
View 

hypothetical protein CEQ31_009600 [Serratia odorifera]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Tsi6 pfam18660
Tsi6; Tsi6 inhibits the NADase activity of Tse6, an integral membrane toxin from Pseudomonas ...
 2-84 3.92e-40

Tsi6; Tsi6 inhibits the NADase activity of Tse6, an integral membrane toxin from Pseudomonas aeruginosa. The Tsi6 immunity protein adopts an all-alpha-helical fold that binds to a surface of Tse6.


:

Pssm-ID: 408442  Cd Length: 83  Bit Score: 128.17  E-value: 3.92e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1332095515   2 TAIDYVNAALAVVKERQNTLPSFPLYQSALNQIQYIKDILEGNNNDKSKLHTITLGAYASKEFATTDPELAQHLSNVNYI 81
Cdd:pfam18660   1 TALDYVDRALALVQKRLKALPGFPIYQSIEQQLQYLRDVLEGEEKDKSKLHTLTFGAYAVKEFEETDPELARALSDANYI 80


                  ...
gi 1332095515  82 ASQ 84
Cdd:pfam18660  81 ASQ 83
 
Name Accession Description Interval E-value
Tsi6 pfam18660
Tsi6; Tsi6 inhibits the NADase activity of Tse6, an integral membrane toxin from Pseudomonas ...
 2-84 3.92e-40

Tsi6; Tsi6 inhibits the NADase activity of Tse6, an integral membrane toxin from Pseudomonas aeruginosa. The Tsi6 immunity protein adopts an all-alpha-helical fold that binds to a surface of Tse6.


Pssm-ID: 408442  Cd Length: 83  Bit Score: 128.17  E-value: 3.92e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1332095515   2 TAIDYVNAALAVVKERQNTLPSFPLYQSALNQIQYIKDILEGNNNDKSKLHTITLGAYASKEFATTDPELAQHLSNVNYI 81
Cdd:pfam18660   1 TALDYVDRALALVQKRLKALPGFPIYQSIEQQLQYLRDVLEGEEKDKSKLHTLTFGAYAVKEFEETDPELARALSDANYI 80


                  ...
gi 1332095515  82 ASQ 84
Cdd:pfam18660  81 ASQ 83
 
Name Accession Description Interval E-value
Tsi6 pfam18660
Tsi6; Tsi6 inhibits the NADase activity of Tse6, an integral membrane toxin from Pseudomonas ...
 2-84 3.92e-40

Tsi6; Tsi6 inhibits the NADase activity of Tse6, an integral membrane toxin from Pseudomonas aeruginosa. The Tsi6 immunity protein adopts an all-alpha-helical fold that binds to a surface of Tse6.


Pssm-ID: 408442  Cd Length: 83  Bit Score: 128.17  E-value: 3.92e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1332095515   2 TAIDYVNAALAVVKERQNTLPSFPLYQSALNQIQYIKDILEGNNNDKSKLHTITLGAYASKEFATTDPELAQHLSNVNYI 81
Cdd:pfam18660   1 TALDYVDRALALVQKRLKALPGFPIYQSIEQQLQYLRDVLEGEEKDKSKLHTLTFGAYAVKEFEETDPELARALSDANYI 80


                  ...
gi 1332095515  82 ASQ 84
Cdd:pfam18660  81 ASQ 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH