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Conserved domains on  [gi|1353206138|gb|PQN79611|]
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DUF1016 domain-containing protein [Shigella flexneri]

Protein Classification

DUF1016 N-terminal domain-containing protein( domain architecture ID 1752482)

DUF1016 N-terminal domain-containing protein may contain a helix-turn-helix domain similar to those found in ParB proteins

CATH:  1.10.10.2830
Gene Ontology:  GO:0003677
PubMed:  17161598|17161598
SCOP:  4002475

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_ParB super family cl40613
HTH domain found in ParB protein;
19-111 5.61e-37

HTH domain found in ParB protein;


The actual alignment was detected with superfamily member pfam17761:

Pssm-ID: 477411  Cd Length: 137  Bit Score: 123.80  E-value: 5.61e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353206138  19 IIHLVDSARTETVRSVNALMTATYWEIGRRIVEFEqGGEARAAYGAQLIDRLSKDLSRRYKRGVSAKNLRQMRLFYLFFQ 98
Cdd:pfam17761   2 IKELIEQARQRAARAVNSELVLLYWEIGKRIVEEE-LGQERAGYGKKVIKTLSKDLTAEFGKGFSRRNLRYMRQFYEAYP 80

                          90
                  ....*....|...
gi 1353206138  99 HVEIRQTVSGELT 111
Cdd:pfam17761  81 DDEIVQTLVAQLS 93
 
Name Accession Description Interval E-value
DUF1016_N pfam17761
DUF1016 N-terminal domain; This family may include an HTH domain.
 19-111 5.61e-37

DUF1016 N-terminal domain; This family may include an HTH domain.


Pssm-ID: 465488  Cd Length: 137  Bit Score: 123.80  E-value: 5.61e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353206138  19 IIHLVDSARTETVRSVNALMTATYWEIGRRIVEFEqGGEARAAYGAQLIDRLSKDLSRRYKRGVSAKNLRQMRLFYLFFQ 98
Cdd:pfam17761   2 IKELIEQARQRAARAVNSELVLLYWEIGKRIVEEE-LGQERAGYGKKVIKTLSKDLTAEFGKGFSRRNLRYMRQFYEAYP 80

                          90
                  ....*....|...
gi 1353206138  99 HVEIRQTVSGELT 111
Cdd:pfam17761  81 DDEIVQTLVAQLS 93
 
Name Accession Description Interval E-value
DUF1016_N pfam17761
DUF1016 N-terminal domain; This family may include an HTH domain.
 19-111 5.61e-37

DUF1016 N-terminal domain; This family may include an HTH domain.


Pssm-ID: 465488  Cd Length: 137  Bit Score: 123.80  E-value: 5.61e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1353206138  19 IIHLVDSARTETVRSVNALMTATYWEIGRRIVEFEqGGEARAAYGAQLIDRLSKDLSRRYKRGVSAKNLRQMRLFYLFFQ 98
Cdd:pfam17761   2 IKELIEQARQRAARAVNSELVLLYWEIGKRIVEEE-LGQERAGYGKKVIKTLSKDLTAEFGKGFSRRNLRYMRQFYEAYP 80

                          90
                  ....*....|...
gi 1353206138  99 HVEIRQTVSGELT 111
Cdd:pfam17761  81 DDEIVQTLVAQLS 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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