|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11278 |
PRK11278 |
NADH-quinone oxidoreductase subunit NuoF; |
1-445 |
0e+00 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 236891 [Multi-domain] Cd Length: 448 Bit Score: 993.93 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 1 MKQIIRTAETHPLTWRMRDDKQPVWLEEYRSKNGYEGARKALTGMAPDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDE 80
Cdd:PRK11278 2 MKNIIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTGMSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 81 SMNIRYLLCNADEMEPGTYKDRMLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAERLRRAIAEATEAGLLGKNI 160
Cdd:PRK11278 82 SMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 161 LGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQGLS 240
Cdd:PRK11278 162 MGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNIS 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 241 T--SEDKGTKLMGFSGRVKNPGVWELPFGTTAREILEEYAGGMRDGLKFKAWQPGGAGTDFLTDAHLDLPMEFASIGKAG 318
Cdd:PRK11278 242 KgkSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAG 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 319 SRLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFC 398
Cdd:PRK11278 322 SRLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFC 401
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 1355064388 399 AHAPGAVEPLQSAIKYFRDEFEAGIKQSPGNTRAINGIQPNLLKTRW 445
Cdd:PRK11278 402 AHAPGAVEPLQSAIKYFREEFEAGIKQPFSNTHLINGIQPNLLKERW 448
|
|
| nuoF_fam |
TIGR01959 |
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ... |
12-423 |
0e+00 |
|
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]
Pssm-ID: 131014 Cd Length: 411 Bit Score: 767.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 12 PLTWRMRDDkQPVWLEEYRSKNGYEGARKALTGMAPDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNA 91
Cdd:TIGR01959 1 VLTTNLDNP-ESWTLEEYEKRGGYDALRKALEEMSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDSPKPKYLVCNA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 92 DEMEPGTYKDRMLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAERLRRAIAEATEAGLLGKNILGSGFDFELFV 171
Cdd:TIGR01959 80 DESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 172 HTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQGLSTSEDKGTKLMG 251
Cdd:TIGR01959 160 HRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFS 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 252 FSGRVKNPGVWELPFGTTAREILEEYAGGMRDGLKFKAWQPGGAGTDFLT-DAHLDLPMEFASIGKAGSRLGTALAMAVD 330
Cdd:TIGR01959 240 VSGHVNKPGNYELPLGTPLRELLEDYAGGMRGGWKLKAVIPGGSSTPVLPaEQHLDAPMDYDSLAAAGSMLGTGAVIVMD 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 331 HEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGpGKTFCAHAPGAVEPLQS 410
Cdd:TIGR01959 320 ESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIE-GKTICALGDAAAWPVQS 398
|
410
....*....|...
gi 1355064388 411 AIKYFRDEFEAGI 423
Cdd:TIGR01959 399 AIKHFRDEFEAHI 411
|
|
| NuoF |
COG1894 |
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ... |
8-425 |
0e+00 |
|
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 441498 [Multi-domain] Cd Length: 418 Bit Score: 731.04 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 8 AETHPLTWRMRDDKQPVWLEEYRSKNGYEGARKALTGMAPDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDESmNIRYL 87
Cdd:COG1894 1 KKQTRVLLRNCGIIDPESLEDYIARGGYQALRKALTEMTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPKAPG-DPKYL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 88 LCNADEMEPGTYKDRMLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAERLRRAIAEATEAGLLGKNILGSGFDF 167
Cdd:COG1894 80 VCNADEGEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFDF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQGLSTSEDKGT 247
Cdd:COG1894 160 DIEVHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGT 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 248 KLMGFSGRVKNPGVWELPFGTTAREILEEYAGGMRDGLKFKAWQPGGAGTDFLTDAHLDLPMEFASIGKAGSRLGTALAM 327
Cdd:COG1894 240 KLFSLSGHVKNPGLYEVPMGTTLRELIYDIGGGIRGGRKLKAVQPGGPSGGCLPAEHLDTPMDYESLAAAGSMLGSGGMI 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 328 AVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGpGKTFCAHAPGAVEP 407
Cdd:COG1894 320 VMDETTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIK-GTSLCALGDAAPNP 398
|
410
....*....|....*...
gi 1355064388 408 LQSAIKYFRDEFEAGIKQ 425
Cdd:COG1894 399 VLSTLKYFRDEFEAHIKD 416
|
|
| Complex1_51K |
pfam01512 |
Respiratory-chain NADH dehydrogenase 51 Kd subunit; |
54-226 |
3.08e-66 |
|
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
Pssm-ID: 460237 [Multi-domain] Cd Length: 150 Bit Score: 208.91 E-value: 3.08e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 54 VKDAGLKGRGGAGFSTGLKWSLMPKDEsmnIRYLLCNADEMEPGTYKDRMLMEQLPHLLVEGMLISAFALKAYRGYIFLR 133
Cdd:pfam01512 1 VKEAGIVGRGGAGFPTHVKLSPPPKKK---IKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 134 GEYIEAAERLRRAIAEATEAGllgknilgsgfdFELFVHTGAGRYICGEETALINSLEGRRaNPRSKPpfPASSGVwgkp 213
Cdd:pfam01512 78 DEKPEAIAALEKAIAEARAAG------------FDIEVHRGAGAYPCGEEKALIYSLTGRG-VPRGKP--PADVGV---- 138
|
170
....*....|...
gi 1355064388 214 tCVNNVETLCNVP 226
Cdd:pfam01512 139 -VVNNVETLAAVP 150
|
|
| NADH_4Fe-4S |
smart00928 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
336-381 |
4.30e-19 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 197996 [Multi-domain] Cd Length: 46 Bit Score: 80.27 E-value: 4.30e-19
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1355064388 336 VSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDI 381
Cdd:smart00928 1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11278 |
PRK11278 |
NADH-quinone oxidoreductase subunit NuoF; |
1-445 |
0e+00 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 236891 [Multi-domain] Cd Length: 448 Bit Score: 993.93 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 1 MKQIIRTAETHPLTWRMRDDKQPVWLEEYRSKNGYEGARKALTGMAPDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDE 80
Cdd:PRK11278 2 MKNIIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTGMSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 81 SMNIRYLLCNADEMEPGTYKDRMLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAERLRRAIAEATEAGLLGKNI 160
Cdd:PRK11278 82 SMNIRYLLCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 161 LGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQGLS 240
Cdd:PRK11278 162 MGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNIS 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 241 T--SEDKGTKLMGFSGRVKNPGVWELPFGTTAREILEEYAGGMRDGLKFKAWQPGGAGTDFLTDAHLDLPMEFASIGKAG 318
Cdd:PRK11278 242 KgkSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAG 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 319 SRLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFC 398
Cdd:PRK11278 322 SRLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFC 401
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 1355064388 399 AHAPGAVEPLQSAIKYFRDEFEAGIKQSPGNTRAINGIQPNLLKTRW 445
Cdd:PRK11278 402 AHAPGAVEPLQSAIKYFREEFEAGIKQPFSNTHLINGIQPNLLKERW 448
|
|
| nuoF_fam |
TIGR01959 |
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ... |
12-423 |
0e+00 |
|
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]
Pssm-ID: 131014 Cd Length: 411 Bit Score: 767.27 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 12 PLTWRMRDDkQPVWLEEYRSKNGYEGARKALTGMAPDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNA 91
Cdd:TIGR01959 1 VLTTNLDNP-ESWTLEEYEKRGGYDALRKALEEMSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDSPKPKYLVCNA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 92 DEMEPGTYKDRMLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAERLRRAIAEATEAGLLGKNILGSGFDFELFV 171
Cdd:TIGR01959 80 DESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 172 HTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQGLSTSEDKGTKLMG 251
Cdd:TIGR01959 160 HRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFS 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 252 FSGRVKNPGVWELPFGTTAREILEEYAGGMRDGLKFKAWQPGGAGTDFLT-DAHLDLPMEFASIGKAGSRLGTALAMAVD 330
Cdd:TIGR01959 240 VSGHVNKPGNYELPLGTPLRELLEDYAGGMRGGWKLKAVIPGGSSTPVLPaEQHLDAPMDYDSLAAAGSMLGTGAVIVMD 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 331 HEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGpGKTFCAHAPGAVEPLQS 410
Cdd:TIGR01959 320 ESTCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIE-GKTICALGDAAAWPVQS 398
|
410
....*....|...
gi 1355064388 411 AIKYFRDEFEAGI 423
Cdd:TIGR01959 399 AIKHFRDEFEAHI 411
|
|
| NuoF |
COG1894 |
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ... |
8-425 |
0e+00 |
|
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 441498 [Multi-domain] Cd Length: 418 Bit Score: 731.04 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 8 AETHPLTWRMRDDKQPVWLEEYRSKNGYEGARKALTGMAPDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDESmNIRYL 87
Cdd:COG1894 1 KKQTRVLLRNCGIIDPESLEDYIARGGYQALRKALTEMTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPKAPG-DPKYL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 88 LCNADEMEPGTYKDRMLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAERLRRAIAEATEAGLLGKNILGSGFDF 167
Cdd:COG1894 80 VCNADEGEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFDF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 168 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQGLSTSEDKGT 247
Cdd:COG1894 160 DIEVHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGT 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 248 KLMGFSGRVKNPGVWELPFGTTAREILEEYAGGMRDGLKFKAWQPGGAGTDFLTDAHLDLPMEFASIGKAGSRLGTALAM 327
Cdd:COG1894 240 KLFSLSGHVKNPGLYEVPMGTTLRELIYDIGGGIRGGRKLKAVQPGGPSGGCLPAEHLDTPMDYESLAAAGSMLGSGGMI 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 328 AVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGpGKTFCAHAPGAVEP 407
Cdd:COG1894 320 VMDETTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIK-GTSLCALGDAAPNP 398
|
410
....*....|....*...
gi 1355064388 408 LQSAIKYFRDEFEAGIKQ 425
Cdd:COG1894 399 VLSTLKYFRDEFEAHIKD 416
|
|
| PRK13596 |
PRK13596 |
NADH-quinone oxidoreductase subunit NuoF; |
26-429 |
1.94e-144 |
|
NADH-quinone oxidoreductase subunit NuoF;
Pssm-ID: 237441 Cd Length: 433 Bit Score: 418.99 E-value: 1.94e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 26 LEEYRSKNGYEGArKALTGMAPDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRMLM 105
Cdd:PRK13596 20 LKGAKKRGDWDGT-KAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKESDGRPHYLVVNADESEPGTCKDRDIL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 106 EQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAERLRRAIAEATEAGLLGKNILGSGFDFELFVHTGAGRYICGEETA 185
Cdd:PRK13596 99 RHDPHKLIEGCLIASFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFDIYVHHGAGAYICGEETA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 186 LINSLEGRRANPRSKPPFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQGLSTSEDKGTKLMGFSGRVKNPGVWELP 265
Cdd:PRK13596 179 LLESLEGKKGQPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGTKLFCISGHVNKPCNVEEA 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 266 FGTTAREILEEYAGGMRDGLK-FKAWQPGGAGTDFLTDAHL-DLPMEFASIGKAGSRLGTALAMAVDHEINMVSLVRNLE 343
Cdd:PRK13596 259 MGIPFRELIEKHAGGVRGGWDnLLAVIPGGSSVPLIPAEQCeDAIMDFDSLRAVGSGLGTAAVIVMDKSTDIIKAIARLS 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 344 EFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLgPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGI 423
Cdd:PRK13596 339 YFYKHESCGQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQI-EGHTICALGDAAAWPIQGLIRHFRPEIEERI 417
|
....*.
gi 1355064388 424 KQSPGN 429
Cdd:PRK13596 418 DQYTAN 423
|
|
| PLN03132 |
PLN03132 |
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional |
40-432 |
8.03e-125 |
|
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Pssm-ID: 178678 [Multi-domain] Cd Length: 461 Bit Score: 370.35 E-value: 8.03e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 40 KALTGMAPDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDRMLMEQLPHLLVEGMLIS 119
Cdd:PLN03132 64 KDLVLKGPDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIA 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 120 AFALKAYRGYIFLRGEYIEAAERLRRAIAEATEAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRS 199
Cdd:PLN03132 144 GVGMRARAAYIYIRGEYVNERLNLERARHEAYAAGLLGKNACGSGYDFDVYIHYGAGAYICGEETALLESLEGKQGKPRL 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 200 KPPFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQGLSTSEDKGTKLMGFSGRVKNPGVWELPFGTTAREILEEYAG 279
Cdd:PLN03132 224 KPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNAGTKLFCISGHVNKPCTVEEEMSIPLKELIERHCG 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 280 GMRDGL-KFKAWQPGGAGTDFLTDAHLD-LPMEFASIGKAGSRLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTPC 357
Cdd:PLN03132 304 GVRGGWdNLLAIIPGGSSVPLLPKKICDdVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPC 383
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1355064388 358 RDGLPWSVKILRALERGEGQPGDIETLEQLCRFLgPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGIKQSPGNTRA 432
Cdd:PLN03132 384 REGTGWLWDIMERMKVGNAKLEEIDMLQEVTKQI-EGHTICALGDAAAWPVQGLIRHFRPELERRIKERAERELL 457
|
|
| PTZ00304 |
PTZ00304 |
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional |
40-425 |
2.87e-124 |
|
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional
Pssm-ID: 185547 [Multi-domain] Cd Length: 461 Bit Score: 368.73 E-value: 2.87e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 40 KALTGMAPDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDESMN-IRYLLCNADEMEPGTYKDRMLMEQLPHLLVEGMLI 118
Cdd:PTZ00304 53 KDILLKGHDWIIDEIKKSGLRGRGGAGFPSGLKWSFMPKVKPDGrPSYLVVNADESEPGTCKDREIMRHDPHKLVEGALL 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 119 SAFALKAYRGYIFLRGEYIEAAERLRRAIAEATEAGLLGKNILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPR 198
Cdd:PTZ00304 133 AGFAMRARAAYIYIRGEFYNEARALQQAIDEAYKKGFLGKNACGSGYDFDVYVHRGAGAYICGEETALIESIEGKPGKPR 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 199 SKPPFPASSGVWGKPTCVNNVETLCNVPAILANGVEWYQGLSTSEDKGTKLMGFSGRVKNPGVWELPFGTTAREILEEYA 278
Cdd:PTZ00304 213 LKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPQWFASFGRPNNAGTKLFCISGHVNNPCTVEEEMSIPLRELIERHC 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 279 GGMRDGL-KFKAWQPGGAGTDFLTDAHLD-LPMEFASIGKAGSRLGTALAMAVDHEINMVSLVRNLEEFFARESCGWCTP 356
Cdd:PTZ00304 293 GGVRGGWdNLLCVIPGGSSVPLIPKEICDnVLMDFDALKEVQSGLGTAAVIVMDKSTDIIDAILRLSKFYKHESCGQCTP 372
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1355064388 357 CRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLgPGKTFCAHAPGAVEPLQSAIKYFRDEFEAGIKQ 425
Cdd:PTZ00304 373 CREGTPWLVKMMERFVVGNADKEEIDTLEEVSKQI-EGHTICALGDAAAWPVQGLIRHFRPEIEERIER 440
|
|
| Complex1_51K |
pfam01512 |
Respiratory-chain NADH dehydrogenase 51 Kd subunit; |
54-226 |
3.08e-66 |
|
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
Pssm-ID: 460237 [Multi-domain] Cd Length: 150 Bit Score: 208.91 E-value: 3.08e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 54 VKDAGLKGRGGAGFSTGLKWSLMPKDEsmnIRYLLCNADEMEPGTYKDRMLMEQLPHLLVEGMLISAFALKAYRGYIFLR 133
Cdd:pfam01512 1 VKEAGIVGRGGAGFPTHVKLSPPPKKK---IKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 134 GEYIEAAERLRRAIAEATEAGllgknilgsgfdFELFVHTGAGRYICGEETALINSLEGRRaNPRSKPpfPASSGVwgkp 213
Cdd:pfam01512 78 DEKPEAIAALEKAIAEARAAG------------FDIEVHRGAGAYPCGEEKALIYSLTGRG-VPRGKP--PADVGV---- 138
|
170
....*....|...
gi 1355064388 214 tCVNNVETLCNVP 226
Cdd:pfam01512 139 -VVNNVETLAAVP 150
|
|
| NADH_4Fe-4S |
pfam10589 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
338-421 |
7.28e-38 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 463160 [Multi-domain] Cd Length: 85 Bit Score: 132.60 E-value: 7.28e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 338 LVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGpGKTFCAHAPGAVEPLQSAIKYFRD 417
Cdd:pfam10589 2 VARRFLEFYAHESCGKCTPCREGTKWLAEILERIVDGEGTEEDLDLLEELARTIK-GRSLCGLGDGAANPVLSALRYFRD 80
|
....
gi 1355064388 418 EFEA 421
Cdd:pfam10589 81 EFEA 84
|
|
| NADH_4Fe-4S |
smart00928 |
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; |
336-381 |
4.30e-19 |
|
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
Pssm-ID: 197996 [Multi-domain] Cd Length: 46 Bit Score: 80.27 E-value: 4.30e-19
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1355064388 336 VSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDI 381
Cdd:smart00928 1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
|
|
| RnfC |
COG4656 |
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and ... |
45-283 |
4.34e-19 |
|
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase
Pssm-ID: 443694 [Multi-domain] Cd Length: 451 Bit Score: 89.04 E-value: 4.34e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 45 MAPDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDEsmnIRYLLCNADEMEPG-TYKDRMLMEQlPHLLVEGMLISAFAL 123
Cdd:COG4656 119 LSPEEIIERIREAGIVGLGGAGFPTHVKLSPPPDKK---IDTLIINGAECEPYlTCDDRLMRER-AEEIIEGIRILMKAL 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 124 KAYRGYIFLRGEYIEAAERLRRAIAEATeagllgknilgsgfDFElfVHTGAGRYICGEETALINSLEGRRANPRSkppF 203
Cdd:COG4656 195 GAKKVIIGIEDNKPEAIAALRKALAGDD--------------DIE--VVVLPTKYPQGGEKQLIKALTGREVPSGG---L 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 204 PASSGVwgkptCVNNVETLCNVpailangvewYQGLSTSE---DKGTKLMGfsGRVKNPGVWELPFGTTAREILeEYAGG 280
Cdd:COG4656 256 PADVGV-----VVQNVGTAYAI----------YRAVRDGKpliERVVTVTG--DAVKEPGNLLVRIGTPVSDLL-EQAGG 317
|
...
gi 1355064388 281 MRD 283
Cdd:COG4656 318 FKE 320
|
|
| PRK05035 |
PRK05035 |
electron transport complex protein RnfC; Provisional |
47-150 |
2.10e-06 |
|
electron transport complex protein RnfC; Provisional
Pssm-ID: 235334 [Multi-domain] Cd Length: 695 Bit Score: 49.95 E-value: 2.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1355064388 47 PDEIVNAVKDAGLKGRGGAGFSTGLKWSLMPKDesmnIRYLLCNADEMEPGTYKDRMLMEQLPHLLVEGMLISAFALKAY 126
Cdd:PRK05035 127 PEELIERIRQAGIAGLGGAGFPTAVKLQPGGDK----IETLIINGAECEPYITADDRLMRERADEIIEGIRILAHLLQPK 202
|
90 100
....*....|....*....|....
gi 1355064388 127 RGYIFLRGEYIEAAERLRRAIAEA 150
Cdd:PRK05035 203 EVLIGIEDNKPEAIAALRAALAGA 226
|
|
| SLBB |
pfam10531 |
SLBB domain; |
253-284 |
3.26e-04 |
|
SLBB domain;
Pssm-ID: 463136 [Multi-domain] Cd Length: 56 Bit Score: 38.42 E-value: 3.26e-04
10 20 30
....*....|....*....|....*....|..
gi 1355064388 253 SGRVKNPGVWELPFGTTAREILEEYAGGMRDG 284
Cdd:pfam10531 5 TGEVKRPGNYEVPIGTTLSDLIELAGGFTDDA 36
|
|
| |
