|
Name |
Accession |
Description |
Interval |
E-value |
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
1-440 |
0e+00 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 757.67 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 1 MSNLnFDFAENDFRPLAAKMRPTNLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRINAEVER 80
Cdd:COG2256 1 MDDA-AAEASAANAPLAERMRPRTLDEVVGQEHLLGPGKPLRRAIEAGRLSSMILWGPPGTGKTTLARLIANATDAEFVA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 81 ISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVY 160
Cdd:COG2256 80 LSAVTSGVKDIREVIEEARERRAYGRRTILFVDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNSALLSRCRVF 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 161 VLKSLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAEEtENGKKIDRTLLKEVL 240
Cdd:COG2256 160 VLKPLSEEDLEQLLERALADDERGLGGYKLELDDEALEALARLADGDARRALNALELAVLSAPP-DGVIEITLELVEEAL 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 241 GERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF 320
Cdd:COG2256 239 QRRALRYDKDGDEHYDLISAFIKSIRGSDPDAALYWLARMLEAGEDPRFIARRLVIMASEDIGLADPQALQIAVAAAQAV 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 321 TRVGAYEGERAIAQAIIYLAVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYaA 400
Cdd:COG2256 319 ERLGMPEGRIALAQAVIYLATAPKSNAAYLAINAALADVREGGSLPVPLHLRNAPTKLMKELGYGKGYKYPHDYPGGY-V 397
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1357211446 401 GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLREQDKSA 440
Cdd:COG2256 398 GQQYLPDELKGRRYYEPTERGFERKIKERLEKLRKLRRGA 437
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
15-438 |
0e+00 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 748.06 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 15 PLAAKMRPTNLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREA 94
Cdd:PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 95 IDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVL 174
Cdd:PRK13342 81 IEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 175 QQAVEDPERGLgkerLILEENLLQVLAEYVNGDARLALNCLELMVDMaeetenGKKIDRTLLKEVLGERQARFDKQGDRF 254
Cdd:PRK13342 161 KRALEDKERGL----VELDDEALDALARLANGDARRALNLLELAALG------VDSITLELLEEALQKRAARYDKDGDEH 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 255 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQ 334
Cdd:PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIALAQ 310
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 335 AIIYLAVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYaAGENYFPPELKDTQY 414
Cdd:PRK13342 311 AVIYLALAPKSNAAYTAINAALADVREGGSLPVPLHLRNAPTKLMKELGYGKGYKYPHDYPNGY-VGQQYLPDELKGKRY 389
|
410 420
....*....|....*....|....
gi 1357211446 415 YFPTNRGMEIQIKEKLERLREQDK 438
Cdd:PRK13342 390 YEPTERGFEKKIKERLEKLKDKNR 413
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
15-436 |
1.51e-157 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 462.99 E-value: 1.51e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 15 PLAAKMRPTNLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREA 94
Cdd:PRK13341 17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 95 IDRAKQnRLA--DRKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQ 172
Cdd:PRK13341 97 VDRAKE-RLErhGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQ 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 173 VLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAEETENGK-KIDRTLLKEVLGERQARFDKQG 251
Cdd:PRK13341 176 LLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGLiDITLAIAEESIQQRAVLYDKEG 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 252 DRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERA 331
Cdd:PRK13341 256 DAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLPEGLYP 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 332 IAQAIIYLAVAPKSNAVyTAFNTAKQQAKDLPDYDVPPHLRNaPTNLMKELGYGTEYRYAHDEPNAYAAgENYFPPELKD 411
Cdd:PRK13341 336 LAQAALYLATAPKSNSV-LGFFDALKKVREEQVQDVPNHLRD-ANRDGKAFGDGVGYRYPHAFRDHWVA-QQYLPEALQG 412
|
410 420
....*....|....*....|....*
gi 1357211446 412 TQYYFPTNRGMEIQIKEKLERLREQ 436
Cdd:PRK13341 413 EVFWQPSRQGWEGERRERLARRRAA 437
|
|
| MgsA_C |
pfam12002 |
MgsA AAA+ ATPase C terminal; The MgsA protein possesses DNA-dependent ATPase and ssDNA ... |
267-425 |
5.06e-90 |
|
MgsA AAA+ ATPase C terminal; The MgsA protein possesses DNA-dependent ATPase and ssDNA annealing activities. MgsA contributes to the recovery of stalled replication forks and therefore prevents genomic instability caused by aberrant DNA replication. Additionally, MgsA may play a role in chromosomal segregation. This is consistent with a report that MgsA co-localizes with the replisome and affects chromosome segregation. This domain represents the C terminal region of MgsA.
Pssm-ID: 463426 [Multi-domain] Cd Length: 158 Bit Score: 269.98 E-value: 5.06e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 267 GSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSN 346
Cdd:pfam12002 1 GSDPDAALYWLARMLEAGEDPLFIARRLVIIASEDIGLADPQALVVAVAAAQAVERIGMPEARIPLAQAVIYLALAPKSN 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1357211446 347 AVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYaAGENYFPPELKDTQYYFPTNRGMEIQ 425
Cdd:pfam12002 81 SAYLAIDAALADVREGGSLPVPLHLRNAPTKLMKKLGYGKGYKYPHDYPNGY-VKQQYLPDELKGRRYYEPTDNGYEKK 158
|
|
| PRK14700 |
PRK14700 |
recombination factor protein RarA; Provisional |
127-438 |
1.22e-83 |
|
recombination factor protein RarA; Provisional
Pssm-ID: 173163 [Multi-domain] Cd Length: 300 Bit Score: 259.17 E-value: 1.22e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 127 LPHIEDGTVIFIGATTENPSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEDPERgLGKERLILEENLLQVLAEYVNG 206
Cdd:PRK14700 1 MPYVESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEV-LAKHKFKIDDGLYNAMHNYNEG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 207 DARLALNCLELMVDMAEETeNGKKIDRTLLKEVLGERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGD 286
Cdd:PRK14700 80 DCRKILNLLERMFLISTRG-DEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 287 PLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAIIYLAVAPKSNAVYTAFNTAKQQAKDLPDYD 366
Cdd:PRK14700 159 PLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVAPKSNACYKALAQAQQLVKSLGNID 238
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1357211446 367 VPPHLRNAPTnlmkelgygTEYRYAHDEPNAYAAgENYFPPELKDTqYYFPTNRGMEIQIKEKLERLREQDK 438
Cdd:PRK14700 239 VPQHLKNYKD---------SNYLYPHNYPNSYVI-QQYLPDNIIQN-FYQPTASGFEAKIKTKLDSINKIKK 299
|
|
| AAA_assoc_2 |
pfam16193 |
AAA C-terminal domain; AAA_assoc_2 is found at the C-terminus of a relatively small set of AAA ... |
186-266 |
2.86e-30 |
|
AAA C-terminal domain; AAA_assoc_2 is found at the C-terminus of a relatively small set of AAA domains in proteins ranging from archaeal to fungi, plants and mammals.
Pssm-ID: 465057 Cd Length: 81 Bit Score: 112.18 E-value: 2.86e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 186 GKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAEETENGKKIDRTLLKEVLGERQARFDKQGDRFYDLISALHKSV 265
Cdd:pfam16193 1 GGLKIELDDEALEALAELADGDARRALNALELAVLSTPPDDGGIHITLEILEEALQRKALRYDKDGDEHYDLISAFHKSI 80
|
.
gi 1357211446 266 R 266
Cdd:pfam16193 81 R 81
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
53-165 |
9.72e-23 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 93.04 E-value: 9.72e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 53 MILWGPPGTGKTTLAEIIAQRINAEVERISA-------VTSGIKEIREAIDRAKQNrladRKTILFVDEVHRFNKSQ--- 122
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGselvskyVGESEKRLRELFEAAKKL----APCVIFIDEIDALAGSRgsg 76
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1357211446 123 --------QDAFLPHIEDGT-----VIFIGATTEnpSFELNNALLSRARVYVLKSL 165
Cdd:pfam00004 77 gdsesrrvVNQLLTELDGFTssnskVIVIAATNR--PDKLDPALLGRFDRIIEFPL 130
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
22-297 |
1.50e-21 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 95.26 E-value: 1.50e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 22 PTNLEQYFGQSHLIgegKPLRKAIQAGHI-HSMILWGPPGTGKTTLAEIIAQRINAE----------------------- 77
Cdd:COG2812 6 PQTFDDVVGQEHVV---RTLKNALASGRLaHAYLFTGPRGVGKTTLARILAKALNCEngptgepcgecescraiaagshp 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 78 -VERISAVTS--GIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFL-------PHiedgtVIFIGATTEnPsf 147
Cdd:COG2812 83 dVIEIDAEASniGVDDIRELIEKVSYAPVEGRYKVYIIDEAHMLTTEAFNALLktleeppPH-----VVFILATTE-P-- 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 148 elnNALL----SRARVYVLKSLTTAEIEQVLQQAVEdperglgKERLILEENLLQVLAEYVNGDARLALnclelmvdmae 223
Cdd:COG2812 155 ---QKLLptilSRCQRFDFRRLPPEEIAEHLAKIAE-------REGIEIEPEALALIARAADGSMRDAL----------- 213
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1357211446 224 etengkkidrTLL--KEVLGERQARfdkqgDRFYDLISALHKSVrgsaPDAALYWYARILTAGGDPLYVARRLLAI 297
Cdd:COG2812 214 ----------SLLdqAIAFGLLDRR-----ELLLDLLEALLAGD----VAALLALAEELAKRGRDLKRFLDDLLSL 270
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
10-216 |
3.43e-20 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 93.34 E-value: 3.43e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 10 ENDFRPLAAKMRPTNLEQYFGQSHLIgegKPLRKAIQAGHI-HSMILWGPPGTGKTTLAEIIAQRINAE----------- 77
Cdd:PRK07133 2 RMKYKALYRKYRPKTFDDIVGQDHIV---QTLKNIIKSNKIsHAYLFSGPRGTGKTSVAKIFANALNCShktdllepcqe 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 78 -----------VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED--GTVIFIGATTEn 144
Cdd:PRK07133 79 cienvnnsldiIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEppKHVIFILATTE- 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1357211446 145 pSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEdperglgKERLILEENLLQVLAEYVNGDARLALNCLE 216
Cdd:PRK07133 158 -VHKIPLTILSRVQRFNFRRISEDEIVSRLEFILE-------KENISYEKNALKLIAKLSSGSLRDALSIAE 221
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
19-241 |
9.22e-20 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 91.83 E-value: 9.22e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 19 KMRPTNLEQYFGQSHLIgegKPLRKAIQAGHI-HSMILWGPPGTGKTTLAEIIAQRINAE-------------------- 77
Cdd:PRK05896 9 KYRPHNFKQIIGQELIK---KILVNAILNNKLtHAYIFSGPRGIGKTSIAKIFAKAINCLnpkdgdccnscsvcesintn 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 78 -----VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGT--VIFIGATTENPSFELn 150
Cdd:PRK05896 86 qsvdiVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPkhVVFIFATTEFQKIPL- 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 151 nALLSRARVYVLKSLTTAEIEQVLQQAVEdperglgKERLILEENLLQVLAEYVNGDARLALNCLELMVdmaeeTENGKK 230
Cdd:PRK05896 165 -TIISRCQRYNFKKLNNSELQELLKSIAK-------KEKIKIEDNAIDKIADLADGSLRDGLSILDQLS-----TFKNSE 231
|
250
....*....|.
gi 1357211446 231 IDRTLLKEVLG 241
Cdd:PRK05896 232 IDIEDINKTFG 242
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
13-240 |
6.60e-19 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 89.38 E-value: 6.60e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 13 FRPLAAKMRPTNLEQYFGQSHLIgegKPLRKAIQAGHIH-SMILWGPPGTGKTTLAEIIAQRINAE-------------- 77
Cdd:PRK08691 3 YQVLARKWRPKTFADLVGQEHVV---KALQNALDEGRLHhAYLLTGTRGVGKTTIARILAKSLNCEnaqhgepcgvcqsc 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 78 -----------VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED--GTVIFIGATTEN 144
Cdd:PRK08691 80 tqidagryvdlLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEppEHVKFILATTDP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 145 PSFELnnALLSRARVYVLKSLTTaeieqvlQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLE--LMVDMA 222
Cdd:PRK08691 160 HKVPV--TVLSRCLQFVLRNMTA-------QQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDqaIALGSG 230
|
250 260
....*....|....*....|...
gi 1357211446 223 EETENGKK-----IDRTLLKEVL 240
Cdd:PRK08691 231 KVAENDVRqmigaVDKQYLYELL 253
|
|
| HLD_clamp_RarA |
cd18139 |
helical lid domain of recombination factor protein RarA; Recombination factor RarA ... |
165-241 |
8.09e-18 |
|
helical lid domain of recombination factor protein RarA; Recombination factor RarA (Replication associated recombination gene/protein A, also known as MgsA (Maintenance of genome stability A) or Mgs1 in yeast and WRNIP1 in mammals) is a member of the clamp-loader clade of the AAA+ superfamily. It functions as a tetramer. RarA co-localize with the replication fork throughout the cell cycle and may play a role in the rescue of stalled replication forks.
Pssm-ID: 350841 [Multi-domain] Cd Length: 75 Bit Score: 77.67 E-value: 8.09e-18
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1357211446 165 LTTAEIEQVLQQAVEDPERGlGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAEEtENGKKIDRTLLKEVLG 241
Cdd:cd18139 1 LSEEDLEKLLKRALEDKERG-GDRKVTIDDEALELLAEAADGDARSALNLLELAVLSAEE-DGGIVITLEDLEEVLQ 75
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
17-240 |
9.02e-18 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 84.54 E-value: 9.02e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 17 AAKMRPTNLEQYFGQSHLIgegKPLRKAIQAGHIHSMILW-GPPGTGKTTLAEIIAQRINAE-------------VERIS 82
Cdd:PRK14970 8 ARKYRPQTFDDVVGQSHIT---NTLLNAIENNHLAQALLFcGPRGVGKTTCARILARKINQPgyddpnedfsfniFELDA 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 83 AVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED--GTVIFIGATTENpsFELNNALLSRARVY 160
Cdd:PRK14970 85 ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEppAHAIFILATTEK--HKIIPTILSRCQIF 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 161 VLKSLTTAEIEQVLQQAVEdperglgKERLILEENLLQVLAEYVNGDARLALNCLELMVdmaeeTENGKKIDRTLLKEVL 240
Cdd:PRK14970 163 DFKRITIKDIKEHLAGIAV-------KEGIKFEDDALHIIAQKADGALRDALSIFDRVV-----TFCGKNITRQAVTENL 230
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
15-241 |
3.09e-16 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 80.64 E-value: 3.09e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 15 PLAAKMRPTNLEQYFGQSHLIgegKPLRKAIQAGHI-HSMILWGPPGTGKTTLAEIIAQRINA----------------E 77
Cdd:PRK14953 5 PFARKYRPKFFKEVIGQEIVV---RILKNAVKLQRVsHAYIFAGPRGTGKTTIARILAKVLNClnpqegepcgkcencvE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 78 VERIS---------AVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED--GTVIFIGATTEnpS 146
Cdd:PRK14953 82 IDKGSfpdlieidaASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEppPRTIFILCTTE--Y 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 147 FELNNALLSRARVYVLKSLTTAEIEQVLQqavedpeRGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAEete 226
Cdd:PRK14953 160 DKIPPTILSRCQRFIFSKPTKEQIKEYLK-------RICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGE--- 229
|
250
....*....|....*
gi 1357211446 227 ngKKIDRTLLKEVLG 241
Cdd:PRK14953 230 --GKVTIKVVEEFLG 242
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
9-241 |
5.90e-16 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 79.90 E-value: 5.90e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 9 AENDFRPLAAKMRPTNLEQYFGQSHLIgegKPLRKAIQAGHI-HSMILWGPPGTGKTTLAEIIAQRINAE---------- 77
Cdd:PRK06645 4 SSNQYIPFARKYRPSNFAELQGQEVLV---KVLSYTILNDRLaGGYLLTGIRGVGKTTSARIIAKAVNCSalitenttik 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 78 -------------------VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED--GTVI 136
Cdd:PRK06645 81 tceqctncisfnnhnhpdiIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEppPHII 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 137 FIGATTENPSFELnnALLSRARVYVLKSLTTAEIEQVLQQAVEdperglgKERLILEENLLQVLAEYVNGDARLALNCLE 216
Cdd:PRK06645 161 FIFATTEVQKIPA--TIISRCQRYDLRRLSFEEIFKLLEYITK-------QENLKTDIEALRIIAYKSEGSARDAVSILD 231
|
250 260
....*....|....*....|....*
gi 1357211446 217 LMVDMAEETENgkKIDRTLLKEVLG 241
Cdd:PRK06645 232 QAASMSAKSDN--IISPQVINQMLG 254
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
29-156 |
6.64e-16 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 74.49 E-value: 6.64e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 29 FGQSHLIGEgkpLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQ----------RINAEVERISAVTSGIKEIREAIDRA 98
Cdd:cd00009 1 VGQEEAIEA---LREALELPPPKNLLLYGPPGTGKTTLARAIANelfrpgapflYLNASDLLEGLVVAELFGHFLVRLLF 77
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1357211446 99 KQNRLADRKtILFVDEVHRFNKSQQDAFLPHIED--------GTVIFIGATTENPSFELNNALLSR 156
Cdd:cd00009 78 ELAEKAKPG-VLFIDEIDSLSRGAQNALLRVLETlndlridrENVRVIGATNRPLLGDLDRALYDR 142
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
41-317 |
9.32e-16 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 77.32 E-value: 9.32e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 41 LRKAIQAGHI-HSMILWGPPGTGKTTLAEIIAQRINAE-----------------------VERISAV----TSGIKEIR 92
Cdd:COG0470 8 LLAAAESGRLpHALLLHGPPGIGKTTLALALARDLLCEnpeggkacgqchsrlmaagnhpdLLELNPEeksdQIGIDQIR 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 93 EAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED---GTVIFIgaTTENPSfELNNALLSRARVYVLKSLTTAE 169
Cdd:COG0470 88 ELGEFLSLTPLEGGRKVVIIDEADAMNEAAANALLKTLEEppkNTPFIL--IANDPS-RLLPTIRSRCQVIRFRPPSEEE 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 170 IEQVLQQAVedperglgkerliLEENLLQVLAEYVNGDARLALNCLELMVDMAEETENGKKIDRTLLKEVLGErQARFDK 249
Cdd:COG0470 165 ALAWLREEG-------------VDEDALEAILRLAGGDPRAAINLLQALAGRKELLEDLAALLSRDRALELLD-ALLKAE 230
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 250 QGDRFYDLISALHKSVRGSAPDAALY-WYARILTAggdplyvARRLLAiasedvgNADPR-AMQVALAAW 317
Cdd:COG0470 231 ALELLDWLLKWLLDNLPLEYAGEDLArAYEALSEA-------DRRLGR-------YANDRlLLEALLAKL 286
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
17-223 |
2.69e-15 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 77.89 E-value: 2.69e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 17 AAKMRPTNLEQYFGQSHLIGEgkpLRKAIQAGHI-HSMILWGPPGTGKTTLAEIIAQRIN-----AEVERISAVTS---- 86
Cdd:PRK14971 8 ARKYRPSTFESVVGQEALTTT---LKNAIATNKLaHAYLFCGPRGVGKTTCARIFAKTINcqnltADGEACNECEScvaf 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 87 -----------------GIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED--GTVIFIGATTEN--- 144
Cdd:PRK14971 85 neqrsyniheldaasnnSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEppSYAIFILATTEKhki 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 145 -PSfelnnaLLSRARVYVLKSLTTAEIEQVLQQAVEdperglgKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAE 223
Cdd:PRK14971 165 lPT------ILSRCQIFDFNRIQVADIVNHLQYVAS-------KEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTG 231
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
19-316 |
3.09e-15 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 77.93 E-value: 3.09e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 19 KMRPTNLEQYFGQSHLIgegKPLRKAIQAGHI-HSMILWGPPGTGKTTLAEIIAQRINAE-------------------- 77
Cdd:PRK14950 9 KWRSQTFAELVGQEHVV---QTLRNAIAEGRVaHAYLFTGPRGVGKTSTARILAKAVNCTtndpkgrpcgtcemcraiae 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 78 ------VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED--GTVIFIGATTEnpSFEL 149
Cdd:PRK14950 86 gsavdvIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEppPHAIFILATTE--VHKV 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 150 NNALLSRARVYVLKSLTTAEIEQVLqqavedpERGLGKERLILEENLLQVLAEYVNGDARLALNCLE-LMvdmaeeTENG 228
Cdd:PRK14950 164 PATILSRCQRFDFHRHSVADMAAHL-------RKIAAAEGINLEPGALEAIARAATGSMRDAENLLQqLA------TTYG 230
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 229 KKIDRTLLKEVLG-ERQARFDKQGDRF--YDLISALhKSVRGSAPDAA-LYWYAR----------ILTAGGDplyvaRRL 294
Cdd:PRK14950 231 GEISLSQVQSLLGiSGDEEVKALAEALlaKDLKAAL-RTLNAVAADGAdLRQFTRdlveylrqvmLLNSGAD-----RSL 304
|
330 340
....*....|....*....|..
gi 1357211446 295 LAIASEDVGNADPRAMQVALAA 316
Cdd:PRK14950 305 LDLTADEKAALQKVSQIANLEA 326
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
21-296 |
3.49e-15 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 77.57 E-value: 3.49e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 21 RPTNLEQYFGQSHLigeGKPLRKAIQAGHI-HSMILWGPPGTGKTTLAEIIAQRIN--AEVERISAVTSGIKEIREA--- 94
Cdd:PRK14963 9 RPITFDEVVGQEHV---KEVLLAALRQGRLgHAYLFSGPRGVGKTTTARLIAMAVNcsGEDPKPCGECESCLAVRRGahp 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 95 ----IDRAKQNRLAD---------------RKTILFVDEVHRFNKSQQDAFLPHIED--GTVIFIGATTEnPSfELNNAL 153
Cdd:PRK14963 86 dvleIDAASNNSVEDvrdlrekvllaplrgGRKVYILDEAHMMSKSAFNALLKTLEEppEHVIFILATTE-PE-KMPPTI 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 154 LSRARVYVLKSLTTAEIEQVLQQAVEdperGLGKERlilEENLLQVLAEYVNGDARLALNCLELMVDMaeetenGKKIDR 233
Cdd:PRK14963 164 LSRTQHFRFRRLTEEEIAGKLRRLLE----AEGREA---EPEALQLVARLADGAMRDAESLLERLLAL------GTPVTR 230
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1357211446 234 TLLKEVLGErqarfdKQGDRFYDLISALHKSVRGSAPDAAlywyARILTAGGDPLYVARRLLA 296
Cdd:PRK14963 231 KQVEEALGL------PPQERLRGIAAALAQGDAAEALSGA----AQLYRDGFAARTLVEGLLE 283
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
13-266 |
3.64e-15 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 77.78 E-value: 3.64e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 13 FRPLAAKMRPTNLEQYFGQSHLigeGKPLRKAIQAGHIHSMILW-GPPGTGKTTLAEIIAQRINAEVERISA---VTSGI 88
Cdd:PRK14960 2 YQVLARKYRPRNFNELVGQNHV---SRALSSALERGRLHHAYLFtGTRGVGKTTIARILAKCLNCETGVTSTpceVCATC 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 89 KEIREA-------IDRAKQNRLADRKTIL---------------FVDEVHRFNKSQQDAFLPHIEDGT--VIFIGATTEn 144
Cdd:PRK14960 79 KAVNEGrfidlieIDAASRTKVEDTRELLdnvpyaptqgrfkvyLIDEVHMLSTHSFNALLKTLEEPPehVKFLFATTD- 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 145 PSfELNNALLSRARVYVLKSLTTAEIEQVLQQAVEdperglgKERLILEENLLQVLAEYVNGDARLALNclelMVDMAEE 224
Cdd:PRK14960 158 PQ-KLPITVISRCLQFTLRPLAVDEITKHLGAILE-------KEQIAADQDAIWQIAESAQGSLRDALS----LTDQAIA 225
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1357211446 225 TENGkKIDRTLLKEVLGERqarfdkqgDR--FYDLISALHKSVR 266
Cdd:PRK14960 226 YGQG-AVHHQDVKEMLGLI--------DRtiIYDLILAVHQNQR 260
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
16-241 |
3.88e-15 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 77.11 E-value: 3.88e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 16 LAAKMRPTNLEQYFGQSHLigeGKPLRKAIQAGHI-HSMILWGPPGTGKTTLAEIIAQRINAE----------------- 77
Cdd:PRK14962 4 LYRKYRPKTFSEVVGQDHV---KKLIINALKKNSIsHAYIFAGPRGTGKTTVARILAKSLNCEnrkgvepcnecracrsi 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 78 --------VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED--GTVIFIGATTeNPSf 147
Cdd:PRK14962 81 degtfmdvIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEppSHVVFVLATT-NLE- 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 148 ELNNALLSRARVYVLKSLTTAEIEQVLQQAVEdperglgKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAeeten 227
Cdd:PRK14962 159 KVPPTIISRCQVIEFRNISDELIIKRLQEVAE-------AEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFS----- 226
|
250
....*....|....
gi 1357211446 228 GKKIDRTLLKEVLG 241
Cdd:PRK14962 227 EGKITLETVHEALG 240
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
20-139 |
4.01e-15 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 72.53 E-value: 4.01e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 20 MRPTNLEQYFGQSHLIGEgkpLRKAIQAG--------HIhsmILWGPPGTGKTTLAEIIAQRINAEVErisaVTSGikei 91
Cdd:pfam05496 1 LRPRTLDEYIGQEKVKEN---LKIFIEAAkqrgealdHV---LLYGPPGLGKTTLANIIANEMGVNIR----ITSG---- 66
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1357211446 92 rEAIDRAKQ-----NRLADRKtILFVDEVHRFNKSQQDAFLPHIEDGTV-IFIG 139
Cdd:pfam05496 67 -PAIERPGDlaailTNLEPGD-VLFIDEIHRLNRAVEEILYPAMEDFRLdIVIG 118
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
12-262 |
8.85e-15 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 76.33 E-value: 8.85e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 12 DFRPLAAKMRPTNLEQYFGQSHLIgegKPLRKAIQAGHIHSMILW-GPPGTGKTTLAEIIAQRINAE------------- 77
Cdd:PRK14969 2 SYQVLARKWRPKSFSELVGQEHVV---RALTNALEQQRLHHAYLFtGTRGVGKTTLARILAKSLNCEtgvtatpcgvcsa 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 78 ------------VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED--GTVIFIGATTE 143
Cdd:PRK14969 79 cleidsgrfvdlIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEppEHVKFILATTD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 144 NPSFELnnALLSRARVYVLKSLTTAEIEQVLQQAvedpergLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAE 223
Cdd:PRK14969 159 PQKIPV--TVLSRCLQFNLKQMPPPLIVSHLQHI-------LEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGG 229
|
250 260 270
....*....|....*....|....*....|....*....
gi 1357211446 224 ETENGKKIdRTLLKEVlgerqarfDKqgDRFYDLISALH 262
Cdd:PRK14969 230 GTVNESEV-RAMLGAI--------DQ--DYLFALLEALL 257
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
20-240 |
1.85e-14 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 74.01 E-value: 1.85e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 20 MRPTNLEQYFGQSHLIGEgkpLRKAIQA--------GHIhsmILWGPPGTGKTTLAEIIAQRINAEVeRIsavTSGikei 91
Cdd:PRK00080 19 LRPKSLDEFIGQEKVKEN---LKIFIEAakkrgealDHV---LLYGPPGLGKTTLANIIANEMGVNI-RI---TSG---- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 92 rEAIDRAKQnrLA------DRKTILFVDEVHRFNKSQQDAFLPHIEDGTV-IFIG----ATT---ENPSFELNNA----- 152
Cdd:PRK00080 85 -PALEKPGD--LAailtnlEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLdIMIGkgpaARSirlDLPPFTLIGAttrag 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 153 LLS---RAR---VYVLKSLTTAEIEQVLQqavedpeRGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAeETE 226
Cdd:PRK00080 162 LLTsplRDRfgiVQRLEFYTVEELEKIVK-------RSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDFA-QVK 233
|
250
....*....|....
gi 1357211446 227 NGKKIDRTLLKEVL 240
Cdd:PRK00080 234 GDGVITKEIADKAL 247
|
|
| ruvB |
TIGR00635 |
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions ... |
24-240 |
2.05e-14 |
|
Holliday junction DNA helicase, RuvB subunit; All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129721 [Multi-domain] Cd Length: 305 Bit Score: 73.49 E-value: 2.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 24 NLEQYFGQSHLIgegKPLRKAIQAGHIHS-----MILWGPPGTGKTTLAEIIAQRINAEVErisaVTSGikeirEAIDRA 98
Cdd:TIGR00635 2 LLAEFIGQEKVK---EQLQLFIEAAKMRQealdhLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSG-----PALEKP 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 99 KQ--NRLA--DRKTILFVDEVHRFNKSQQDAFLPHIED------------GTVI--------FIGATTEnpSFELNNALL 154
Cdd:TIGR00635 70 GDlaAILTnlEEGDVLFIDEIHRLSPAVEELLYPAMEDfrldivigkgpsARSVrldlppftLVGATTR--AGMLTSPLR 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 155 SR-ARVYVLKSLTTAEIEQVLQqavedpeRGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAeETENGKKIDR 233
Cdd:TIGR00635 148 DRfGIILRLEFYTVEELAEIVS-------RSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFA-QVRGQKIINR 219
|
....*..
gi 1357211446 234 TLLKEVL 240
Cdd:TIGR00635 220 DIALKAL 226
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
12-235 |
6.97e-14 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 72.54 E-value: 6.97e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 12 DFRPLAAKMRPTNLEQYFGQSHLIgegKPLRKAIQAGHIH-SMILWGPPGTGKTTLAEIIAQRINAE------------- 77
Cdd:PRK14961 2 NYQILARKWRPQYFRDIIGQKHIV---TAISNGLSLGRIHhAWLLSGTRGVGKTTIARLLAKSLNCQngitsnpcrkcii 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 78 ------------VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGT--VIFIGATTE 143
Cdd:PRK14961 79 ckeiekglcldlIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPqhIKFILATTD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 144 NPsfELNNALLSRARVYVLKSLTTAEIEQVLQQAvedpergLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAE 223
Cdd:PRK14961 159 VE--KIPKTILSRCLQFKLKIISEEKIFNFLKYI-------LIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGK 229
|
250
....*....|..
gi 1357211446 224 ETENGKKIDRTL 235
Cdd:PRK14961 230 GNINIKNVTDML 241
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
41-244 |
7.54e-14 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 73.02 E-value: 7.54e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 41 LRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRINAEVERI--SAVTSGI-----KEIREAIDRAKQNrladRKTILFVD 113
Cdd:COG0464 182 LREEYGLPPPRGLLLYGPPGTGKTLLARALAGELGLPLIEVdlSDLVSKYvgeteKNLREVFDKARGL----APCVLFID 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 114 EV-----------HRFNKSQQDAFLPHIEDGT--VIFIGATteNPSFELNNALLSR--ARVYVLKsLTTAEIEQVLQQAV 178
Cdd:COG0464 258 EAdalagkrgevgDGVGRRVVNTLLTEMEELRsdVVVIAAT--NRPDLLDPALLRRfdEIIFFPL-PDAEERLEIFRIHL 334
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1357211446 179 edPERGLGKErLILEEnLLQVLAEYVNGDAR-LALNCLELMVDMAEETENGKKIDRTLLKEVLGERQ 244
Cdd:COG0464 335 --RKRPLDED-VDLEE-LAEATEGLSGADIRnVVRRAALQALRLGREPVTTEDLLEALEREDIFLKR 397
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
16-235 |
1.41e-13 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 72.29 E-value: 1.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 16 LAAKMRPTNLEQYFGQSHLIGEgkpLRKAIQAGHI-HSMILWGPPGTGKTTLAEIIAQRINAE----------------- 77
Cdd:PRK14956 8 LSRKYRPQFFRDVIHQDLAIGA---LQNALKSGKIgHAYIFFGPRGVGKTTIARILAKRLNCEnpignepcnectsclei 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 78 --------VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED--GTVIFIGATTEnpSF 147
Cdd:PRK14956 85 tkgissdvLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEppAHIVFILATTE--FH 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 148 ELNNALLSRARVYVLKSLTTAeieqVLQQAVedpERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAEETEN 227
Cdd:PRK14956 163 KIPETILSRCQDFIFKKVPLS----VLQDYS---EKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLT 235
|
....*...
gi 1357211446 228 GKKIDRTL 235
Cdd:PRK14956 236 GVKIRKMI 243
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
21-139 |
1.36e-12 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 68.57 E-value: 1.36e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 21 RPTNLEQYFGQSHLIGEgkpLRKAIQA--------GHIhsmILWGPPGTGKTTLAEIIAQRINAEVErisaVTSGikeir 92
Cdd:COG2255 23 RPKRLDEYIGQEKVKEN---LKIFIEAakkrgealDHV---LLYGPPGLGKTTLAHIIANEMGVNIR----ITSG----- 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1357211446 93 EAIDRAKQnrLA------DRKTILFVDEVHRFNKSQQDAFLPHIEDGTV-IFIG 139
Cdd:COG2255 88 PAIEKPGD--LAailtnlEEGDVLFIDEIHRLSRVVEEILYPAMEDFRLdIVIG 139
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
13-241 |
2.42e-12 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 68.57 E-value: 2.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 13 FRPLAAKMRPTNLEQYFGQSHLIGEgkpLRKAIQAGHIHSMILW-GPPGTGKTTLAEIIAQRINAE-------------- 77
Cdd:PRK14957 3 YQALARKYRPQSFAEVAGQQHALNS---LVHALETQKVHHAYLFtGTRGVGKTTLGRLLAKCLNCKtgvtaepcnkcenc 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 78 -----------VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGT--VIFIGATTEN 144
Cdd:PRK14957 80 vainnnsfidlIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPeyVKFILATTDY 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 145 PSFELnnALLSRARVYVLKSLTTAEIEQVLQQAvedpergLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAee 224
Cdd:PRK14957 160 HKIPV--TILSRCIQLHLKHISQADIKDQLKII-------LAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFC-- 228
|
250
....*....|....*..
gi 1357211446 225 tenGKKIDRTLLKEVLG 241
Cdd:PRK14957 229 ---GGELKQAQIKQMLG 242
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
16-212 |
8.49e-12 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 67.44 E-value: 8.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 16 LAAKMRPTNLEQYFGQSHLIgegKPLRKAI--QAGHiHSMILWGPPGTGKTTLAEIIAQRINAEveriSAVT-------S 86
Cdd:PRK14949 6 LARKWRPATFEQMVGQSHVL---HALTNALtqQRLH-HAYLFTGTRGVGKTSLARLFAKGLNCE----QGVTatpcgvcS 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 87 GIKEIREA-------IDRAKQNRLADRKTIL---------------FVDEVHRFNKSQQDAFLPHIEDGT--VIFIGATT 142
Cdd:PRK14949 78 SCVEIAQGrfvdlieVDAASRTKVDDTRELLdnvqyrpsrgrfkvyLIDEVHMLSRSSFNALLKTLEEPPehVKFLLATT 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 143 EnPSfELNNALLSRARVYVLKSLTTAEIEQVLQQAvedpergLGKERLILEENLLQVLAEYVNGDARLAL 212
Cdd:PRK14949 158 D-PQ-KLPVTVLSRCLQFNLKSLTQDEIGTQLNHI-------LTQEQLPFEAEALTLLAKAANGSMRDAL 218
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
16-216 |
2.27e-11 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 65.53 E-value: 2.27e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 16 LAAKMRPTNLEQYFGQSHLIgegKPLRKAIQAGHI-HSMILWGPPGTGKTTLAEIIAQRINAE----------------- 77
Cdd:PRK14965 6 LARKYRPQTFSDLTGQEHVS---RTLQNAIDTGRVaHAFLFTGARGVGKTSTARILAKALNCEqgltaepcnvcppcvei 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 78 --------VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGT--VIFIGATTEnpSF 147
Cdd:PRK14965 83 tegrsvdvFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPphVKFIFATTE--PH 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1357211446 148 ELNNALLSRARVYVLKSLTTAEIEQVLQQAVEdperglgKERLILEENLLQVLAEYVNGDARLALNCLE 216
Cdd:PRK14965 161 KVPITILSRCQRFDFRRIPLQKIVDRLRYIAD-------QEGISISDAALALVARKGDGSMRDSLSTLD 222
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
16-212 |
9.81e-11 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 64.10 E-value: 9.81e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 16 LAAKMRPTNLEQYFGQSHLIgegKPLRKAIQAGHIHSMILW-GPPGTGKTTLAEIIAQRINAE----------------- 77
Cdd:PRK07003 6 LARKWRPKDFASLVGQEHVV---RALTHALDGGRLHHAYLFtGTRGVGKTTLSRIFAKALNCEtgvtsqpcgvcracrei 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 78 --------VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGT--VIFIGATTENPSF 147
Cdd:PRK07003 83 degrfvdyVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPphVKFILATTDPQKI 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1357211446 148 ELnnALLSRARVYVLKSLTTAEIeqvlqqaVEDPERGLGKERLILEENLLQVLAEYVNGDARLAL 212
Cdd:PRK07003 163 PV--TVLSRCLQFNLKQMPAGHI-------VSHLERILGEERIAFEPQALRLLARAAQGSMRDAL 218
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
51-165 |
1.49e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 59.31 E-value: 1.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 51 HSMILWGPPGTGKTTLAEIIAQRINAEVERISAV------------------------TSGIKEIREAIDRAKQNrladR 106
Cdd:smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIdgedileevldqllliivggkkasGSGELRLRLALALARKL----K 78
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 107 KTILFVDEVHRFNKSQQDAFL----------PHIEDGTVIFIGATT-ENPSFELNNALLSRARVYVLKSL 165
Cdd:smart00382 79 PDVLILDEITSLLDAEQEALLllleelrlllLLKSEKNLTVILTTNdEKDLGPALLRRRFDRRIVLLLIL 148
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
51-249 |
2.59e-10 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 60.67 E-value: 2.59e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 51 HSMILWGPPGTGKTTLAEIIAQRIN---AEVERISAVTS----GIKEIREAIDRAKQNRladrkTILFVDEVHRFNKS-- 121
Cdd:COG1223 36 RKILFYGPPGTGKTMLAEALAGELKlplLTVRLDSLIGSylgeTARNLRKLFDFARRAP-----CVIFFDEFDAIAKDrg 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 122 -QQD---------AFLPHIED--GTVIFIGATteNPSFELNNALLSR-ARVYVLKSLTTAEIEQVLqqavedpERGLGKE 188
Cdd:COG1223 111 dQNDvgevkrvvnALLQELDGlpSGSVVIAAT--NHPELLDSALWRRfDEVIEFPLPDKEERKEIL-------ELNLKKF 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1357211446 189 RLILEEN---LLQVLAEYVNGD-ARLALNCLELMVdmaeeTENGKKIDRTLLKEVLGERQARFDK 249
Cdd:COG1223 182 PLPFELDlkkLAKKLEGLSGADiEKVLKTALKKAI-----LEDREKVTKEDLEEALKQRKERKKE 241
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
16-212 |
2.60e-10 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 62.59 E-value: 2.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 16 LAAKMRPTNLEQYFGQSHLIgegKPLRKAIQAGHIHSMILW-GPPGTGKTTLAEIIAQRINAE----------------- 77
Cdd:PRK12323 6 LARKWRPRDFTTLVGQEHVV---RALTHALEQQRLHHAYLFtGTRGVGKTTLSRILAKSLNCTgadgeggitaqpcgqcr 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 78 -------------VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED--GTVIFIGATT 142
Cdd:PRK12323 83 acteidagrfvdyIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEppEHVKFILATT 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 143 ENPSFELnnALLSRARVYVLKSLTTAEIeqvlqqaVEDPERGLGKERLILEENLLQVLAEYVNGDARLAL 212
Cdd:PRK12323 163 DPQKIPV--TVLSRCLQFNLKQMPPGHI-------VSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDAL 223
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
52-159 |
3.53e-10 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 58.45 E-value: 3.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 52 SMILWGPPGTGKTTLAEIIAQRINAEVERISA-------VTSGIKEIREAIDRAKQNRLAdrktILFVDEVHRFNKSQQD 124
Cdd:cd19481 28 GILLYGPPGTGKTLLAKALAGELGLPLIVVKLssllskyVGESEKNLRKIFERARRLAPC----ILFIDEIDAIGRKRDS 103
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1357211446 125 ------------AFLPHIEDGT----VIFIGATteNPSFELNNALLSRARV 159
Cdd:cd19481 104 sgesgelrrvlnQLLTELDGVNsrskVLVIAAT--NRPDLLDPALLRPGRF 152
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
16-241 |
5.01e-10 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 61.34 E-value: 5.01e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 16 LAAKMRPTNLEQYFGQSHLIgegKPLRKAIQAGHIHSMILW-GPPGTGKTTLAEIIAQRINAEV-----------ERISA 83
Cdd:PRK14964 3 LALKYRPSSFKDLVGQDVLV---RILRNAFTLNKIPQSILLvGASGVGKTTCARIISLCLNCSNgptsdpcgtchNCISI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 84 VTSGIKEIREaIDRAKQNRLADRKTIL---------------FVDEVHRFNKSQQDAFLPHIED--GTVIFIGATTENPS 146
Cdd:PRK14964 80 KNSNHPDVIE-IDAASNTSVDDIKVILenscylpisskfkvyIIDEVHMLSNSAFNALLKTLEEpaPHVKFILATTEVKK 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 147 FELnnALLSRARVYVLKSLTTAEIEQVLQQAVEdperglgKERLILEENLLQVLAEYVNGDARLALNCLELMVdmaeeTE 226
Cdd:PRK14964 159 IPV--TIISRCQRFDLQKIPTDKLVEHLVDIAK-------KENIEHDEESLKLIAENSSGSMRNALFLLEQAA-----IY 224
|
250
....*....|....*
gi 1357211446 227 NGKKIDRTLLKEVLG 241
Cdd:PRK14964 225 SNNKISEKSVRDLLG 239
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
19-241 |
1.32e-09 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 60.27 E-value: 1.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 19 KMRPTNLEQYFGQSHLIgegKPLRKAIQAGHI-HSMILWGPPGTGKTTLAEIIAQRINAEV------------------E 79
Cdd:PRK05563 9 KWRPQTFEDVVGQEHIT---KTLKNAIKQGKIsHAYLFSGPRGTGKTSAAKIFAKAVNCLNppdgepcneceickaitnG 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 80 RISAVT-------SGIKEIREAIDRAKQNRLADRKTILFVDEVHR-----FNksqqdAFLPHIEDGT--VIFIGATTEN- 144
Cdd:PRK05563 86 SLMDVIeidaasnNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMlstgaFN-----ALLKTLEEPPahVIFILATTEPh 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 145 --PSfelnnALLSRARVYVLKSLTTAEIEQVL-----QQAVEDPERGL------------------------GKERLILE 193
Cdd:PRK05563 161 kiPA-----TILSRCQRFDFKRISVEDIVERLkyildKEGIEYEDEALrliaraaeggmrdalsildqaisfGDGKVTYE 235
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1357211446 194 -----------ENLLQVLAEYVNGDARLALNCLELMVDMaeetenGKKIDRtLLKEVLG 241
Cdd:PRK05563 236 dalevtgsvsqEALDDLVDAIVEGDVAKALKILEELLDE------GKDPNR-FIEDLIY 287
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
15-224 |
3.32e-09 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 58.92 E-value: 3.32e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 15 PLAAKMRPTNLEQYFGQSHLigeGKPLRKAIQAGHIHSMILW-GPPGTGKTTLAEIIAQRINAE----------VERISA 83
Cdd:PRK14959 5 SLTARYRPQTFAEVAGQETV---KAILSRAAQENRVAPAYLFsGTRGVGKTTIARIFAKALNCEtaptgepcntCEQCRK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 84 VTSG----IKEIREA----IDRAKQNRLA-------DRKTILFVDEVHRFNKSQQDAFLPHIED--GTVIFIGATTENPS 146
Cdd:PRK14959 82 VTQGmhvdVVEIDGAsnrgIDDAKRLKEAigyapmeGRYKVFIIDEAHMLTREAFNALLKTLEEppARVTFVLATTEPHK 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1357211446 147 FELnnALLSRARVYVLKSLTTAEIEQVLQQAvedpergLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMAEE 224
Cdd:PRK14959 162 FPV--TIVSRCQHFTFTRLSEAGLEAHLTKV-------LGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGES 230
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
52-156 |
9.52e-09 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 53.84 E-value: 9.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 52 SMILWGPPGTGKTTLAEIIAQRI-NAEVERI--SAVTS-----GIKEIREAIDRAKQN---RLADRKTILFVDEVHRFNK 120
Cdd:pfam07728 1 GVLLVGPPGTGKTELAERLAAALsNRPVFYVqlTRDTTeedlfGRRNIDPGGASWVDGplvRAAREGEIAVLDEINRANP 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1357211446 121 SQQDAFLP-------HIEDGT---------VIFIGATTENPS--FELNNALLSR 156
Cdd:pfam07728 81 DVLNSLLSllderrlLLPDGGelvkaapdgFRLIATMNPLDRglNELSPALRSR 134
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
16-261 |
1.03e-08 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 57.43 E-value: 1.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 16 LAAKMRPTNLEQYFGQSHLIgegKPLRKAIQAGHIHSMILW-GPPGTGKTTLAEIIAQRINAE----------------- 77
Cdd:PRK14958 6 LARKWRPRCFQEVIGQAPVV---RALSNALDQQYLHHAYLFtGTRGVGKTTISRILAKCLNCEkgvsanpcndcencrei 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 78 --------VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED--GTVIFIGATTENpsF 147
Cdd:PRK14958 83 degrfpdlFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEppSHVKFILATTDH--H 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 148 ELNNALLSRARVYVLKSLTTAEIEQVLQQAvedpergLGKERLILEENLLQVLAEYVNGDARLALNclelMVDMAEETEN 227
Cdd:PRK14958 161 KLPVTVLSRCLQFHLAQLPPLQIAAHCQHL-------LKEENVEFENAALDLLARAANGSVRDALS----LLDQSIAYGN 229
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1357211446 228 GK-----------KIDRTLLKEVLgerQARFDKQGDRFYDLISAL 261
Cdd:PRK14958 230 GKvliadvktmlgTIEPLLLFDIL---EALAAKAGDRLLGCVTRL 271
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
19-242 |
1.32e-08 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 56.15 E-value: 1.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 19 KMRPTNLEQYFGQSHLIgegKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRINAEV-------------------- 78
Cdd:PRK12402 8 KYRPALLEDILGQDEVV---ERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPwennftefnvadffdqgkky 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 79 ----ERISAVTSGIKEIREA-IDRAKQ--NRLA-------DRKTILFvDEVHRFNKSQQDAFLPHIE--DGTVIFIGATT 142
Cdd:PRK12402 85 lvedPRFAHFLGTDKRIRSSkIDNFKHvlKEYAsyrplsaDYKTILL-DNAEALREDAQQALRRIMEqySRTCRFIIATR 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 143 eNPSfELNNALLSRARVYVLKSLTTAEIEQVLQQAVEdperglgKERLILEENLLQVLAEYVNGDARLALNCLELMVdma 222
Cdd:PRK12402 164 -QPS-KLIPPIRSRCLPLFFRAPTDDELVDVLESIAE-------AEGVDYDDDGLELIAYYAGGDLRKAILTLQTAA--- 231
|
250 260
....*....|....*....|
gi 1357211446 223 eetENGKKIDRTLLKEVLGE 242
Cdd:PRK12402 232 ---LAAGEITMEAAYEALGD 248
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
13-240 |
3.32e-08 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 55.28 E-value: 3.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 13 FRPLAAKMRPTNLEQYFGQSHLIGEgkpLRKAIQAGHI-HSMILWGPPGTGKTTLAEIIAQRINAE-------------- 77
Cdd:PRK14955 3 YQVIARKYRPKKFADITAQEHITRT---IQNSLRMGRVgHGYIFSGLRGVGKTTAARVFAKAVNCQrmiddadylqevte 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 78 -------------------VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGT--VI 136
Cdd:PRK14955 80 pcgecescrdfdagtslniSEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPphAI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 137 FIGATTEnpSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEdperglgKERLILEENLLQVLAEYVNGDARLALNCLE 216
Cdd:PRK14955 160 FIFATTE--LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICE-------AEGISVDADALQLIGRKAQGSMRDAQSILD 230
|
250 260
....*....|....*....|....
gi 1357211446 217 LMVDMAEETENGKKIDRTLLKEVL 240
Cdd:PRK14955 231 QVIAFSVESEGEGSIRYDKVAELL 254
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
16-163 |
4.97e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 54.78 E-value: 4.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 16 LAAKMRPTNLEQYFGQSHLIgegKPLRKAIQAGHI-HSMILWGPPGTGKTTLAEIIAQRIN--------------AEVER 80
Cdd:PRK06305 7 SSRKYRPQTFSEILGQDAVV---AVLKNALRFNRAaHAYLFSGIRGTGKTTLARIFAKALNcqnptedqepcnqcASCKE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 81 ISAVTS------------GIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED--GTVIFIGATTENps 146
Cdd:PRK06305 84 ISSGTSldvleidgashrGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEppQHVKFFLATTEI-- 161
|
170
....*....|....*..
gi 1357211446 147 FELNNALLSRARVYVLK 163
Cdd:PRK06305 162 HKIPGTILSRCQKMHLK 178
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
16-216 |
6.23e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 54.65 E-value: 6.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 16 LAAKMRPTNLEQYFGQSHLigeGKPLRKAIQAGHI-HSMILWGPPGTGKTTLAEIIAQRINAE----------------- 77
Cdd:PRK08451 4 LALKYRPKHFDELIGQESV---SKTLSLALDNNRLaHAYLFSGLRGSGKTSSARIFARALVCEqgpsstpcdtciqcqsa 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 78 --------VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED--GTVIFIGATTEnpSF 147
Cdd:PRK08451 81 lenrhidiIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEppSYVKFILATTD--PL 158
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1357211446 148 ELNNALLSRARVYVLKSLTTAEIEQVLQQAVEdperglgKERLILEENLLQVLAEYVNGDARLALNCLE 216
Cdd:PRK08451 159 KLPATILSRTQHFRFKQIPQNSIISHLKTILE-------KEGVSYEPEALEILARSGNGSLRDTLTLLD 220
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
13-240 |
7.03e-08 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 54.56 E-value: 7.03e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 13 FRPLAAKMRPTNLEQYFGQSHLIGEgkpLRKAIQAGHI-HSMILWGPPGTGKTTLAEIIAQRINAE-------------- 77
Cdd:PRK14954 3 YQVIARKYRPSKFADITAQEHITHT---IQNSLRMDRVgHGYIFSGLRGVGKTTAARVFAKAVNCQrmiddpvylqevte 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 78 -------------------VERISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED--GTVI 136
Cdd:PRK14954 80 pcgecescrdfdagtslniSEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEppPHAI 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 137 FIGATTEnpSFELNNALLSRARVYVLKSLTTAEIEQVLQQAVEdperglgKERLILEENLLQVLAEYVNGDARLALNCLE 216
Cdd:PRK14954 160 FIFATTE--LHKIPATIASRCQRFNFKRIPLDEIQSQLQMICR-------AEGIQIDADALQLIARKAQGSMRDAQSILD 230
|
250 260
....*....|....*....|....
gi 1357211446 217 LMVDMAEETENGKKIDRTLLKEVL 240
Cdd:PRK14954 231 QVIAFSVGSEAEKVIAYQGVAELL 254
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
13-143 |
7.33e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 54.52 E-value: 7.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 13 FRPLAAKMRPTNLEQYFGQSHLIgegKPLRKAIQAGHI-HSMILWGPPGTGKTTLAEIIAQRINAEVERIS--------- 82
Cdd:PRK09111 11 YRVLARKYRPQTFDDLIGQEAMV---RTLTNAFETGRIaQAFMLTGVRGVGKTTTARILARALNYEGPDGDggptidlcg 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 83 ---------------------AVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFL-------PHiedgt 134
Cdd:PRK09111 88 vgehcqaimegrhvdvlemdaASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLktleeppPH----- 162
|
....*....
gi 1357211446 135 VIFIGATTE 143
Cdd:PRK09111 163 VKFIFATTE 171
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
15-262 |
1.64e-07 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 53.39 E-value: 1.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 15 PLAAKMRPTNLEQYFGQSHLIGEGKPLRKAIQAGHIH-SMILWGPPGTGKTTLAEIIAQRINAEV-------ERISAVts 86
Cdd:PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKkALLLYGPPGVGKTSLAHALANDYGWEVielnasdQRTADV-- 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 87 gikeIREAIDRAKQNR--LADRKTILFVDEVhrfnksqqDAFLPHIEDGTV---IFIGATTENP---------SFELNNa 152
Cdd:PRK04195 81 ----IERVAGEAATSGslFGARRKLILLDEV--------DGIHGNEDRGGAraiLELIKKAKQPiiltandpyDPSLRE- 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 153 LLSRARVYVLKSLTTAEIEQVLqqavedpERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVdmaeetENGKKID 232
Cdd:PRK04195 148 LRNACLMIEFKRLSTRSIVPVL-------KRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIA------EGYGKLT 214
|
250 260 270
....*....|....*....|....*....|
gi 1357211446 233 RTLLKEvLGERqarfDKQGDRFYDLISALH 262
Cdd:PRK04195 215 LEDVKT-LGRR----DREESIFDALDAVFK 239
|
|
| RecA-like_VPS4-like |
cd19509 |
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This ... |
52-161 |
4.65e-07 |
|
ATPase domain of VPS4, ATAD1, K, KTNA1, Spastin, FIGL-1 and similar ATPase domains; This subfamily includes the ATPase domains of vacuolar protein sorting-associated protein 4 (VPS4), ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase), Katanin p60 ATPase-containing subunit A1 (KTNA1), Spastin, and Fidgetin-Like 1 (FIGL-1). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410917 [Multi-domain] Cd Length: 163 Bit Score: 49.27 E-value: 4.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 52 SMILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREA--IDRAKQNRLADRKT-ILFVDEV-----------HR 117
Cdd:cd19509 34 GILLYGPPGTGKTLLARAVASESGSTFFSISASSLVSKWVGESekIVRALFALARELQPsIIFIDEIdsllsergsgeHE 113
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1357211446 118 FNKSQQDAFL------PHIEDGTVIFIGATteNPSFELNNALLSR--ARVYV 161
Cdd:cd19509 114 ASRRVKTEFLvqmdgvLNKPEDRVLVLGAT--NRPWELDEAFLRRfeKRIYI 163
|
|
| DnaA |
COG0593 |
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair]; |
55-250 |
5.54e-07 |
|
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
Pssm-ID: 440358 [Multi-domain] Cd Length: 303 Bit Score: 50.96 E-value: 5.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 55 LWGPPGTGKTTLAEIIAQRI-----NAEVERISA---VTSGIKEIRE-AIDRAKQN-RLADrktILFVDEVHRF--NKSQ 122
Cdd:COG0593 39 LYGGVGLGKTHLLHAIGNEAlennpGARVVYLTAeefTNDFINAIRNnTIEEFKEKyRSVD---VLLIDDIQFLagKEAT 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 123 QDAFLpHI------EDGTVIFIGATTenPSfELNNA---LLSRarvyvLKSLTTAEIE--------QVLQQAVEDpergl 185
Cdd:COG0593 116 QEEFF-HTfnalreAGKQIVLTSDRP--PK-ELPGLeerLRSR-----LEWGLVVDIQppdletriAILRKKAAD----- 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1357211446 186 gkERLILEENLLQVLAEYVNGDARlalnCLELMVD--MAEETENGKKIDRTLLKEVLGERQARFDKQ 250
Cdd:COG0593 182 --RGLELPDEVLEYLARRIERNVR----ELEGALNrlDAYALLTGRPITLELAREVLKDLLRAQKKE 242
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
19-215 |
5.63e-07 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 51.14 E-value: 5.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 19 KMRPTNLEQYFGQSHLIgegKPLRKAIQAGHIHSMILWGP-PGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAIDR 97
Cdd:PHA02544 14 KYRPSTIDECILPAADK---ETFKSIVKKGRIPNMLLHSPsPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRNRLTR 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 98 -AKQNRLADRKTILFVDEVHRfnksqqdAFLPHIEDGTVIFIGATTENPSFEL--NN------ALLSRARVYVLKSLTTA 168
Cdd:PHA02544 91 fASTVSLTGGGKVIIIDEFDR-------LGLADAQRHLRSFMEAYSKNCSFIItaNNkngiiePLRSRCRVIDFGVPTKE 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1357211446 169 EIEQVLQQAVEDPERGLGKERLILEenlLQVLAEYVNG---DARLALNCL 215
Cdd:PHA02544 164 EQIEMMKQMIVRCKGILEAEGVEVD---MKVLAALVKKnfpDFRRTINEL 210
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
41-114 |
1.03e-06 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 50.39 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 41 LRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRINAE--VERISAVTS-----GIKEIREAIDRAKQNrladRKTILFVD 113
Cdd:COG1222 103 LFRKYGIEPPKGVLLYGPPGTGKTLLAKAVAGELGAPfiRVRGSELVSkyigeGARNVREVFELAREK----APSIIFID 178
|
.
gi 1357211446 114 E 114
Cdd:COG1222 179 E 179
|
|
| RecA-like_NVL_r1-like |
cd19518 |
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
53-115 |
1.65e-06 |
|
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410926 [Multi-domain] Cd Length: 169 Bit Score: 48.17 E-value: 1.65e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 53 MILWGPPGTGKTTLAEIIAQRINAEVERISA--VTSGI-----KEIREAIDRAKQNrladRKTILFVDEV 115
Cdd:cd19518 37 VLLHGPPGCGKTMLANAIAGELKVPFLKISAteIVSGVsgeseEKIRELFDQAISN----APCIVFIDEI 102
|
|
| COG2842 |
COG2842 |
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons]; ... |
41-239 |
3.68e-06 |
|
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons];
Pssm-ID: 442090 [Multi-domain] Cd Length: 254 Bit Score: 48.02 E-value: 3.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 41 LRKAIQAGHIhsMILWGPPGTGKT-TLAEIIAQRINA----------------EVER---ISAVTSGIKEIREAIdrakQ 100
Cdd:COG2842 43 LDEARALPGI--GVVYGESGVGKTtAAREYANRNPNViyvtaspswtskelleELAEelgIPAPPGTIADLRDRI----L 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 101 NRLADRKTILFVDEVHRFNKsQQDAFLPHIEDGT---VIFIGatteNPSFElnnALLSR-ARVY-------VLKSLTTAE 169
Cdd:COG2842 117 ERLAGTGRLLIIDEADHLKP-KALEELRDIHDETgvgVVLIG----MERLP---AKLKRyEQLYsrigfwvEFKPLSLED 188
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 170 IEQVLQQAVEdperglgkerlILEENLLQVLAEYVNGDARLALNCLELMVDMAeETENGKKIDRTLLKEV 239
Cdd:COG2842 189 VRALAEAWGE-----------LTDPDLLELLHRITRGNLRRLDRTLRLAARAA-KRNGLTKITLDHVRAA 246
|
|
| DEXXQc_Upf1-like |
cd17934 |
DEXXQ-box helicase domain of Upf1-like helicase; The Upf1-like helicase family includes UPF1, ... |
54-139 |
6.35e-06 |
|
DEXXQ-box helicase domain of Upf1-like helicase; The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), coronavirus Nsp13, and similar proteins. They belong to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 438708 [Multi-domain] Cd Length: 121 Bit Score: 45.30 E-value: 6.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 54 ILWGPPGTGKT-TLAEIIAQRINAE-VERIsAVTsgikeireaidrAKQNRLADRKTILFVDEVhrfnkSQQ---DAFLP 128
Cdd:cd17934 3 LIQGPPGTGKTtTIAAIVLQLLKGLrGKRV-LVT------------AQSNVAVDNVDVVIIDEA-----SQItepELLIA 64
|
90
....*....|.
gi 1357211446 129 HIEDGTVIFIG 139
Cdd:cd17934 65 LIRAKKVVLVG 75
|
|
| RecA-like_PAN_like |
cd19502 |
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily ... |
54-115 |
1.03e-05 |
|
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily contains ATPase subunits of the eukaryotic 26S proteasome, and of the archaeal proteasome which carry out ATP-dependent degradation of substrates of the ubiquitin-proteasome pathway. The eukaryotic 26S proteasome consists of a proteolytic 20S core particle (CP), and a 19S regulatory particle (RP) which provides the ATP-dependence and the specificity for ubiquitinated proteins. In the archaea the RP is a homohexameric complex of proteasome-activating nucleotidase (PAN). This subfamily also includes various eukaryotic 26S subunits including, proteasome 26S subunit, ATPase 2 (PSMC2, also known as S7 and MSS1) which is a member of the 19S RP and has a chaperone like activity; and proteasome 20S subunit alpha 6 (PSMA6, also known as IOTA, p27K, and PROS27) which is a member of the 20S CP. This RecA-like_PAN subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410910 [Multi-domain] Cd Length: 171 Bit Score: 45.79 E-value: 1.03e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1357211446 54 ILWGPPGTGKTTLAEIIAQRINAEVERISA-------VTSGIKEIREAIDRAKQNrladRKTILFVDEV 115
Cdd:cd19502 41 LLYGPPGTGKTLLAKAVANHTDATFIRVVGselvqkyIGEGARLVRELFEMAREK----APSIIFIDEI 105
|
|
| RecA-like_CDC48_NLV2_r1-like |
cd19503 |
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ... |
54-115 |
1.67e-05 |
|
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410911 [Multi-domain] Cd Length: 165 Bit Score: 44.97 E-value: 1.67e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1357211446 54 ILWGPPGTGKTTLAEIIAQRINAEVERIS--AVTSGI-----KEIREAIDRAKQNRLAdrktILFVDEV 115
Cdd:cd19503 38 LLHGPPGTGKTLLARAVANEAGANFLSISgpSIVSKYlgeseKNLREIFEEARSHAPS----IIFIDEI 102
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
19-215 |
2.39e-05 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 46.02 E-value: 2.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 19 KMRPTNLEQYFGQSHLIgegKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRI------------NAEVERisavts 86
Cdd:PRK00440 10 KYRPRTLDEIVGQEEIV---ERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELygedwrenflelNASDER------ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 87 GIKEIREAID---RAKQNRLADRKtILFVDEVHRFNKSQQDAFLPHIEdgtvIFigatTENPSFELN--------NALLS 155
Cdd:PRK00440 81 GIDVIRNKIKefaRTAPVGGAPFK-IIFLDEADNLTSDAQQALRRTME----MY----SQNTRFILScnysskiiDPIQS 151
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 156 RARVYVLKSLTTAEIEQVLQQAVEdperglgKERLILEENLLQVLAEYVNGDARLALNCL 215
Cdd:PRK00440 152 RCAVFRFSPLKKEAVAERLRYIAE-------NEGIEITDDALEAIYYVSEGDMRKAINAL 204
|
|
| CMPK |
cd02020 |
Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine ... |
57-109 |
3.01e-05 |
|
Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Pssm-ID: 238978 [Multi-domain] Cd Length: 147 Bit Score: 44.01 E-value: 3.01e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1357211446 57 GPPGTGKTTLAEIIAQRIN-----------AEVERISAVTSGIKEIREAIDRaKQNRLADRKTI 109
Cdd:cd02020 6 GPAGSGKSTVAKLLAKKLGlpyldtggirtEEVGKLASEVAAIPEVRKALDE-RQRELAKKPGI 68
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
52-139 |
3.26e-05 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 43.48 E-value: 3.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 52 SMILWGPPGTGKTTLAEIIAQRINAEVERISAVT----SGIKEIREAIDRAKQNRLADRKT------------------- 108
Cdd:pfam13401 7 ILVLTGESGTGKTTLLRRLLEQLPEVRDSVVFVDlpsgTSPKDLLRALLRALGLPLSGRLSkeellaalqqlllalavav 86
|
90 100 110
....*....|....*....|....*....|....*.
gi 1357211446 109 ILFVDEVHRFnKSQQDAFLPHIEDG-----TVIFIG 139
Cdd:pfam13401 87 VLIIDEAQHL-SLEALEELRDLLNLsskllQLILVG 121
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
15-216 |
3.67e-05 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 45.49 E-value: 3.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 15 PLAAKMRPTNLEQYFGQSHLIGEgkpLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRI------NAEVERISAVTSGI 88
Cdd:PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSR---LQVIARDGNMPNLILSGPPGTGKTTSILALAHELlgpnykEAVLELNASDDRGI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 89 KEIREAIDRAKQNRLA---DRKTILFVDEVHRFNKSQQDAFLPHIE--DGTVIFigATTENPSFELNNALLSRARVYVLK 163
Cdd:PLN03025 79 DVVRNKIKMFAQKKVTlppGRHKIVILDEADSMTSGAQQALRRTMEiySNTTRF--ALACNTSSKIIEPIQSRCAIVRFS 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1357211446 164 SLTTAEIEQVLQQAVEdperglgKERLILEENLLQVLAEYVNGDARLALNCLE 216
Cdd:PLN03025 157 RLSDQEILGRLMKVVE-------AEKVPYVPEGLEAIIFTADGDMRQALNNLQ 202
|
|
| RecA-like_spastin |
cd19524 |
ATPase domain of spastin; Spastin is an ATP-dependent microtubule-severing protein involved in ... |
53-161 |
4.03e-05 |
|
ATPase domain of spastin; Spastin is an ATP-dependent microtubule-severing protein involved in microtubule dynamics; it specifically recognizes and cuts microtubules that are polyglutamylated. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410932 [Multi-domain] Cd Length: 164 Bit Score: 43.69 E-value: 4.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 53 MILWGPPGTGKTTLAEIIAQRINAEVERISA-------VTSGIKEIRE--AIDRAKQnrladrKTILFVDEV-------- 115
Cdd:cd19524 36 LLLFGPPGNGKTMLAKAVAAESNATFFNISAasltskyVGEGEKLVRAlfAVARELQ------PSIIFIDEVdsllsers 109
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1357211446 116 ---HRFNKSQQDAFLPHIE------DGTVIFIGATteNPSFELNNALLSR--ARVYV 161
Cdd:cd19524 110 egeHEASRRLKTEFLIEFDgvqsngDDRVLVMGAT--NRPQELDDAVLRRftKRVYV 164
|
|
| DEXXQc_Helz-like |
cd18038 |
DEXXQ/H-box helicase domain of Helz-like helicase; This subfamily contains HELZ, Mov10L1, and ... |
43-72 |
4.16e-05 |
|
DEXXQ/H-box helicase domain of Helz-like helicase; This subfamily contains HELZ, Mov10L1, and similar proteins. Helicase with zinc finger (HELZ) acts as a helicase that plays a role in RNA metabolism during development. Moloney leukemia virus 10-like protein 1 (Mov10L1) binds Piwi-interacting RNA (piRNA) precursors to initiate piRNA processing. All are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350796 [Multi-domain] Cd Length: 229 Bit Score: 44.53 E-value: 4.16e-05
10 20 30
....*....|....*....|....*....|...
gi 1357211446 43 KAIQAGHIHS--MILWGPPGTGKT-TLAEIIAQ 72
Cdd:cd18038 11 RNIVTGTSRPppYIIFGPPGTGKTvTLVEAILQ 43
|
|
| CDC48 |
TIGR01243 |
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ... |
53-242 |
6.78e-05 |
|
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Pssm-ID: 273521 [Multi-domain] Cd Length: 733 Bit Score: 45.28 E-value: 6.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 53 MILWGPPGTGKTTLAEIIAQRINAEVERISA-------VTSGIKEIREAIDRAKQNRLAdrktILFVDEVhrfnksqqDA 125
Cdd:TIGR01243 215 VLLYGPPGTGKTLLAKAVANEAGAYFISINGpeimskyYGESEERLREIFKEAEENAPS----IIFIDEI--------DA 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 126 FLPHIED-----------------------GTVIFIGATteNPSFELNNALLSRARV---YVLKSLTTAEIEQVLQQAVe 179
Cdd:TIGR01243 283 IAPKREEvtgevekrvvaqlltlmdglkgrGRVIVIGAT--NRPDALDPALRRPGRFdreIVIRVPDKRARKEILKVHT- 359
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1357211446 180 dperglgKERLILEENLLQVLAEYVNG--DARLALNCLELMVDMAEETENGKKID---RTLLKEVLGE 242
Cdd:TIGR01243 360 -------RNMPLAEDVDLDKLAEVTHGfvGADLAALAKEAAMAALRRFIREGKINfeaEEIPAEVLKE 420
|
|
| RecA-like_VCP_r2 |
cd19529 |
second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ... |
53-115 |
9.35e-05 |
|
second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ATPase domains; The Valosin-containing protein-like ATPase of Thermoplasma acidophilum (VAT), is an archaeal homolog of the ubiquitous Cdc48/p97. It is a protein unfoldase that functions in concert with the 20S proteasome by unfolding proteasome substrates and passing them on for degradation. VAT forms a homohexamer, each monomer contains two tandem ATPase domains, referred to as D1 and D2, and an N-terminal domain. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410937 [Multi-domain] Cd Length: 159 Bit Score: 42.87 E-value: 9.35e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 53 MILWGPPGTGKTTLAEIIAQRINAEV------ERISA-VTSGIKEIREAIDRAKQNrladRKTILFVDEV 115
Cdd:cd19529 30 ILLYGPPGTGKTLLAKAVATESNANFisvkgpELLSKwVGESEKAIREIFRKARQV----APCVIFFDEI 95
|
|
| RecA-like_CDC48_r2-like |
cd19511 |
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase ... |
54-115 |
1.37e-04 |
|
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase domains; This subfamily includes the second of two ATPase domains of the molecular chaperone CDC48 in yeast and p97 or VCP in metazoans, Peroxisomal biogenesis factor 1 (PEX1) and -6 (PEX6), Valosin-containing protein-like ATPase (VAT), and nuclear VCP-like protein (NVL). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410919 [Multi-domain] Cd Length: 159 Bit Score: 42.27 E-value: 1.37e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1357211446 54 ILWGPPGTGKTTLAEIIAQRINAEVERISA-------VTSGIKEIREAIDRAKQNrladRKTILFVDEV 115
Cdd:cd19511 31 LLYGPPGCGKTLLAKALASEAGLNFISVKGpelfskyVGESERAVREIFQKARQA----APCIIFFDEI 95
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
16-212 |
1.63e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 43.93 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 16 LAAKMRPTNLEQYFGQSHLIgegKPLRKAIQAGHIHSMILW-GPPGTGKTTLAEIIAQRINAEVER----ISAVTSGIKE 90
Cdd:PRK14951 6 LARKYRPRSFSEMVGQEHVV---QALTNALTQQRLHHAYLFtGTRGVGKTTVSRILAKSLNCQGPDgqggITATPCGVCQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 91 IREAIDR----------AKQNRLAD----------------RKTILFVDEVHRFNKSQQDAFLPHIEDGT--VIFIGATT 142
Cdd:PRK14951 83 ACRDIDSgrfvdyteldAASNRGVDevqqlleqavykpvqgRFKVFMIDEVHMLTNTAFNAMLKTLEEPPeyLKFVLATT 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 143 EnPSfELNNALLSRARVYVLKSLTTAEIEQVLQQAvedpergLGKERLILEENLLQVLAEYVNGDARLAL 212
Cdd:PRK14951 163 D-PQ-KVPVTVLSRCLQFNLRPMAPETVLEHLTQV-------LAAENVPAEPQALRLLARAARGSMRDAL 223
|
|
| clpC |
CHL00095 |
Clp protease ATP binding subunit |
54-175 |
1.72e-04 |
|
Clp protease ATP binding subunit
Pssm-ID: 214361 [Multi-domain] Cd Length: 821 Bit Score: 43.89 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 54 ILWGPPGTGKTTLAEIIAQRI-NAEVERIS--------------AVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHR- 117
Cdd:CHL00095 204 ILIGEPGVGKTAIAEGLAQRIvNRDVPDILedklvitldiglllAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTl 283
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1357211446 118 FNKSQQD-----AFL--PHIEDGTVIFIGATTEN---PSFELNNALLSR-ARVYVlKSLTTAEIEQVLQ 175
Cdd:CHL00095 284 IGAGAAEgaidaANIlkPALARGELQCIGATTLDeyrKHIEKDPALERRfQPVYV-GEPSVEETIEILF 351
|
|
| DExxQc_SF1-N |
cd17914 |
DEXQ-box helicase domain of superfamily 1 helicase; The superfamily (SF)1 family members ... |
57-139 |
1.94e-04 |
|
DEXQ-box helicase domain of superfamily 1 helicase; The superfamily (SF)1 family members include UvrD/Rep, Pif1-like, and Upf-1-like proteins. Like SF2, they do not form toroidal, predominantly hexameric structures like SF3-6. Their helicase core is surrounded by C and N-terminal domains with specific functions such as nucleases, RNA or DNA binding domains or domains engaged in protein-protein interactions. SF1 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 438706 [Multi-domain] Cd Length: 121 Bit Score: 40.93 E-value: 1.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 57 GPPGTGKT-TLAEIIA---QRINAEVERISAVTSgikeireaidrakQNRLADRKTILFVDEVHRFNKSQQDAFLPHIED 132
Cdd:cd17914 6 GPPGTGKTrVLVKIVAalmQNKNGEPGRILLVTP-------------TNKAAAQLDNILVDEAAQILEPETSRLIDLALD 72
|
....*...
gi 1357211446 133 -GTVIFIG 139
Cdd:cd17914 73 qGRVILVG 80
|
|
| RecA-like_FtsH |
cd19501 |
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc ... |
54-115 |
2.42e-04 |
|
ATP-dependent zinc metalloprotease FtsH; FtsH ATPase is a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. It is anchored to the cytoplasmic membrane such that the amino- and carboxy-termini are exposed to the cytoplasm. It presents a membrane-bound hexameric structure that is able to unfold and degrade protein substrates. It is comprised of an N-terminal transmembrane region and the larger C-terminal cytoplasmic region, which consists of an ATPase domain and a protease domain. This RecA-Like FTsH subfamily represents the ATPase domain, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410909 [Multi-domain] Cd Length: 171 Bit Score: 41.83 E-value: 2.42e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1357211446 54 ILWGPPGTGKTTLAEIIAQRINAEVERISA-------VTSGIKEIREAIDRAKQNRLAdrktILFVDEV 115
Cdd:cd19501 41 LLVGPPGTGKTLLAKAVAGEAGVPFFSISGsdfvemfVGVGASRVRDLFEQAKKNAPC----IVFIDEI 105
|
|
| RecA-like_Figl-1 |
cd19525 |
ATPase domain of Fidgetin-Like 1 (FIGL-1); FIGL-1 may participate in DNA repair in the nucleus; ... |
53-161 |
2.85e-04 |
|
ATPase domain of Fidgetin-Like 1 (FIGL-1); FIGL-1 may participate in DNA repair in the nucleus; it may be involved in DNA double-strand break repair via homologous recombination. Caenorhabditis elegans FIGL-1 is a nuclear protein and controls the mitotic progression in the germ line and mouse FIGL-1 may be involved in the control of male meiosis. human FIGL-1 has been shown to be a centrosome protein involved in ciliogenesis perhaps as a microtubule-severing protein. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410933 [Multi-domain] Cd Length: 186 Bit Score: 41.90 E-value: 2.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 53 MILWGPPGTGKTTLAEIIAQRINAEVERISA-------VTSGIKEIRE--AIDRAKQnrladrKTILFVDEV-------- 115
Cdd:cd19525 58 ILLFGPPGTGKTLIGKCIASQSGATFFSISAssltskwVGEGEKMVRAlfSVARCKQ------PAVIFIDEIdsllsqrg 131
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1357211446 116 ---HRFNKSQQDAFLPHIE------DGTVIFIGATteNPSFELNNALLSR--ARVYV 161
Cdd:cd19525 132 egeHESSRRIKTEFLVQLDgattssEDRILVVGAT--NRPQEIDEAARRRlvKRLYI 186
|
|
| PspF |
COG1221 |
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain ... |
32-154 |
3.02e-04 |
|
Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms];
Pssm-ID: 440834 [Multi-domain] Cd Length: 835 Bit Score: 43.17 E-value: 3.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 32 SHLIGEGKPLRKAI-QA--------GHIHSMILwGPPGTGKTTLAEII------AQRINAEVERIS-------------- 82
Cdd:COG1221 104 DNLIGANGSLKNAIeQAkaailyppKGLHTLIL-GPTGVGKSFFAELMyeyaieIGVLPEDAPFVVfncadyannpqllm 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 83 ---------AVTSGIKEIREAIDRAKqnrladrKTILFVDEVHRFNKSQQDAFLPHIEDGT--------------VIFIG 139
Cdd:COG1221 183 sqlfgyvkgAFTGADKDKEGLIEKAD-------GGILFLDEVHRLPPEGQEMLFTFMDKGIyrrlgetektrkanVRIIF 255
|
170
....*....|....*
gi 1357211446 140 ATTENPsfelNNALL 154
Cdd:COG1221 256 ATTEDP----ESSLL 266
|
|
| DEXXQc_SMUBP2 |
cd18044 |
DEXXQ-box helicase domain of SMUBP2; SMUBP2 (also called immunoglobulin mu-binding protein 2, ... |
42-72 |
4.24e-04 |
|
DEXXQ-box helicase domain of SMUBP2; SMUBP2 (also called immunoglobulin mu-binding protein 2, or IGHMBP2) is a 5' to 3' helicase that unwinds RNA and DNA duplexes in an ATP-dependent reaction. It is a DNA-binding protein specific to 5'-phosphorylated single-stranded guanine-rich sequence (5'-GGGCT-3') related to the immunoglobulin mu chain switch region. The IGHMBP2 gene is responsible for Charcot-Marie-Tooth disease (CMT) type 2S and spinal muscular atrophy with respiratory distress type 1 (SMARD1). It is also thought to play a role in frontotemporal dementia (FTD) with amyotrophic lateral sclerosis (ALS) and major depressive disorder (MDD). SMUBP2 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350802 [Multi-domain] Cd Length: 191 Bit Score: 41.06 E-value: 4.24e-04
10 20 30
....*....|....*....|....*....|..
gi 1357211446 42 RKAIQAGHIhsMILWGPPGTGKT-TLAEIIAQ 72
Cdd:cd18044 11 KFALSQKDV--ALIHGPPGTGKTtTVVEIILQ 40
|
|
| cdc6 |
PRK00411 |
ORC1-type DNA replication protein; |
41-231 |
4.28e-04 |
|
ORC1-type DNA replication protein;
Pssm-ID: 234751 [Multi-domain] Cd Length: 394 Bit Score: 42.53 E-value: 4.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 41 LRKAIQAGHIHSMILWGPPGTGKTTLA-----EIIAQ-------RINAEVER-----ISAVTSGIKEI---------REA 94
Cdd:PRK00411 46 LRPALRGSRPLNVLIYGPPGTGKTTTVkkvfeELEEIavkvvyvYINCQIDRtryaiFSEIARQLFGHpppssglsfDEL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 95 IDRAKqNRLADRKTILFV--DEVHR-FNKSQQDAF-----LPHIEDGT---VIFIGATTEnpsfeLNNALLSRARVYVLK 163
Cdd:PRK00411 126 FDKIA-EYLDERDRVLIValDDINYlFEKEGNDVLysllrAHEEYPGArigVIGISSDLT-----FLYILDPRVKSVFRP 199
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1357211446 164 SL------TTAEIEQVLQQAVEdpeRGLGKErlILEENLLQVLAEYV---NGDARLALNCLELMVDMAeETENGKKI 231
Cdd:PRK00411 200 EEiyfppyTADEIFDILKDRVE---EGFYPG--VVDDEVLDLIADLTareHGDARVAIDLLRRAGLIA-EREGSRKV 270
|
|
| MoxR |
COG0714 |
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway ... |
48-81 |
4.37e-04 |
|
MoxR-like ATPase [General function prediction only]; MoxR-like ATPase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis
Pssm-ID: 440478 [Multi-domain] Cd Length: 292 Bit Score: 42.08 E-value: 4.37e-04
10 20 30
....*....|....*....|....*....|....
gi 1357211446 48 GHIhsmILWGPPGTGKTTLAEIIAQRINAEVERI 81
Cdd:COG0714 32 GHL---LLEGVPGVGKTTLAKALARALGLPFIRI 62
|
|
| RecA-like_ATAD1 |
cd19520 |
ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ... |
53-156 |
6.45e-04 |
|
ATPase domain of ATPase family AAA domain-containing protein 1 and similar ATPase domains; ATPase family AAA domain-containing protein 1 (ATAD1, also known as Thorase) is an ATPase that plays a critical role in regulating the surface expression of alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid (AMPA) receptors, thereby regulating synaptic plasticity, learning and memory. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410928 [Multi-domain] Cd Length: 166 Bit Score: 40.49 E-value: 6.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 53 MILWGPPGTGKTTLAEIIAQRINAEVERISAVTSGIKEIREAidrakqNRLAD---------RKTILFVDEVHRFNKSQQ 123
Cdd:cd19520 38 VLLYGPPGCGKTMLAKATAKEAGARFINLQVSSLTDKWYGES------QKLVAavfslasklQPSIIFIDEIDSFLRQRS 111
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1357211446 124 ------------------DAFLPHIEDgTVIFIGATteNPSFELNNALLSR 156
Cdd:cd19520 112 stdheatammkaefmslwDGLSTDGNC-RVIVMGAT--NRPQDLDEAILRR 159
|
|
| RecA-like_NSF-SEC18_r1-like |
cd19504 |
first of two ATPase domains of NSF and SEC18, and similar ATPase domains; ... |
49-81 |
7.36e-04 |
|
first of two ATPase domains of NSF and SEC18, and similar ATPase domains; N-ethylmaleimide-sensitive factor (NSF) and Saccharomyces cerevisiae Vesicular-fusion protein Sec18, key factors for eukaryotic trafficking, are ATPases and SNARE disassembly chaperones. NSF/Sec18 activate or prime SNAREs, the terminal catalysts of membrane fusion. Sec18/NSF associates with SNARE complexes through binding Sec17/alpha-SNAP. Sec18 has an N-terminal cap domain and two nucleotide-binding domains (D1 and D2) which form the two rings of the hexameric complex. The hydrolysis of ATP by D1 generates most of the energy necessary to disassemble inactive SNARE bundles, while the D2 ring binds ATP to stabilize the homohexamer. This subfamily includes the first (D1) ATPase domain of NSF/Sec18, and belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410912 [Multi-domain] Cd Length: 177 Bit Score: 40.17 E-value: 7.36e-04
10 20 30
....*....|....*....|....*....|...
gi 1357211446 49 HIHSMILWGPPGTGKTTLAEIIAQRINAEVERI 81
Cdd:cd19504 34 HVKGILLYGPPGTGKTLMARQIGKMLNAREPKI 66
|
|
| RecA-like_CDC48_r1-like |
cd19519 |
first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP ... |
53-134 |
7.50e-04 |
|
first of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r1-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410927 [Multi-domain] Cd Length: 166 Bit Score: 40.11 E-value: 7.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 53 MILWGPPGTGKTTLAEIIAQRINAEV-----ERISAVTSGIKE--IREAIDRAKQNRLAdrktILFVDEVhrfnksqqDA 125
Cdd:cd19519 37 ILLYGPPGTGKTLIARAVANETGAFFflingPEIMSKLAGESEsnLRKAFEEAEKNAPA----IIFIDEI--------DA 104
|
....*....
gi 1357211446 126 FLPHIEDGT 134
Cdd:cd19519 105 IAPKREKTH 113
|
|
| Mg_chelatase |
pfam01078 |
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that ... |
51-135 |
7.92e-04 |
|
Magnesium chelatase, subunit ChlI; Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa.
Pssm-ID: 426032 [Multi-domain] Cd Length: 207 Bit Score: 40.60 E-value: 7.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 51 HSMILWGPPGTGKTTLaeiiAQRINA-----------EVERISAVtSGIKEIREAIDRAK----------------QNR- 102
Cdd:pfam01078 23 HNLLMIGPPGSGKTML----AKRLPGilpplteaealEVTAIHSV-AGLGGDGGLIRRRPfraphhsasaaalvggGSIp 97
|
90 100 110
....*....|....*....|....*....|....*....
gi 1357211446 103 ------LADRKtILFVDEVHRFNKSQQDAFLPHIEDGTV 135
Cdd:pfam01078 98 rpgeisLAHNG-VLFLDELPEFKRRVLESLRQPLEDGEI 135
|
|
| PTZ00361 |
PTZ00361 |
26 proteosome regulatory subunit 4-like protein; Provisional |
54-115 |
1.03e-03 |
|
26 proteosome regulatory subunit 4-like protein; Provisional
Pssm-ID: 185575 [Multi-domain] Cd Length: 438 Bit Score: 41.30 E-value: 1.03e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1357211446 54 ILWGPPGTGKTTLAEIIAQRINAEVERIsaVTS---------GIKEIREAIDRAKQNrladRKTILFVDEV 115
Cdd:PTZ00361 221 ILYGPPGTGKTLLAKAVANETSATFLRV--VGSeliqkylgdGPKLVRELFRVAEEN----APSIVFIDEI 285
|
|
| Fap7 |
COG1936 |
Broad-specificity NMP kinase [Nucleotide transport and metabolism]; |
53-82 |
1.34e-03 |
|
Broad-specificity NMP kinase [Nucleotide transport and metabolism];
Pssm-ID: 441539 [Multi-domain] Cd Length: 173 Bit Score: 39.41 E-value: 1.34e-03
10 20 30
....*....|....*....|....*....|..
gi 1357211446 53 MILW--GPPGTGKTTLAEIIAQRINAEVERIS 82
Cdd:COG1936 1 MRIAitGTPGTGKTTVAKLLAERLGLEVIHLN 32
|
|
| RecA-like_ATAD3-like |
cd19512 |
ATPase domains of ATPase AAA-domain protein 3A (ATAD3A), -3B, and -3C, and similar ATPase ... |
53-127 |
1.40e-03 |
|
ATPase domains of ATPase AAA-domain protein 3A (ATAD3A), -3B, and -3C, and similar ATPase domains; ATPase AAA-domain protein 3 (ATAD3) is a ubiquitously expressed mitochondrial protein involved in mitochondrial dynamics, DNA-nucleoid structural organization, cholesterol transport and steroidogenesis. The ATAD3 gene family in human comprises three paralog genes: ATAD3A, ATAD3B and ATAD3C. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410920 [Multi-domain] Cd Length: 150 Bit Score: 39.05 E-value: 1.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 53 MILWGPPGTGKTTLAEIIAQR--------INAEVERISAvtSGIKEIREAIDRAKQNRladRKTILFVDEVhrfnksqqD 124
Cdd:cd19512 25 ILFYGPPGTGKTLFAKKLALHsgmdyaimTGGDVAPMGR--EGVTAIHKVFDWANTSR---RGLLLFVDEA--------D 91
|
...
gi 1357211446 125 AFL 127
Cdd:cd19512 92 AFL 94
|
|
| PRK03992 |
PRK03992 |
proteasome-activating nucleotidase; Provisional |
55-115 |
1.64e-03 |
|
proteasome-activating nucleotidase; Provisional
Pssm-ID: 179699 [Multi-domain] Cd Length: 389 Bit Score: 40.59 E-value: 1.64e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1357211446 55 LWGPPGTGKTTLAEIIAQRINAEVERISA-------VTSGIKEIREAIDRAKQNRLAdrktILFVDEV 115
Cdd:PRK03992 170 LYGPPGTGKTLLAKAVAHETNATFIRVVGselvqkfIGEGARLVRELFELAREKAPS----IIFIDEI 233
|
|
| PRK09087 |
PRK09087 |
hypothetical protein; Validated |
54-243 |
1.67e-03 |
|
hypothetical protein; Validated
Pssm-ID: 169652 [Multi-domain] Cd Length: 226 Bit Score: 39.66 E-value: 1.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 54 ILWGPPGTGKTTLAEIIAQRINA------EVERISAVTSGIKEIR-EAIDRAKQNrladrKTILFvdevHRFNKSQQdaf 126
Cdd:PRK09087 48 VLAGPVGSGKTHLASIWREKSDAllihpnEIGSDAANAAAEGPVLiEDIDAGGFD-----ETGLF----HLINSVRQ--- 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 127 lphieDGTVIFIGATTENPSFELN-NALLSRarvyvLKSLTTAEIEQvlqqavedPERGL---------GKERLILEENL 196
Cdd:PRK09087 116 -----AGTSLLMTSRLWPSSWNVKlPDLKSR-----LKAATVVEIGE--------PDDALlsqvifklfADRQLYVDPHV 177
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1357211446 197 LQVLaeyVNGDARlALNCLELMVDMAEET--ENGKKIDRTLLKEVLGER 243
Cdd:PRK09087 178 VYYL---VSRMER-SLFAAQTIVDRLDRLalERKSRITRALAAEVLNEM 222
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
19-143 |
1.85e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 40.74 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 19 KMRPTNLEQYFGQSHLIGegkPLRKAIQAGHIHSMILW-GPPGTGKTTLAEIIAQRINAE-------------------- 77
Cdd:PRK07764 8 RYRPATFAEVIGQEHVTE---PLSTALDSGRINHAYLFsGPRGCGKTSSARILARSLNCVegptstpcgecdscvalapg 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 78 ------VERISAVT-SGIKEIREAIDRAKQNRLADRKTILFVDEVHR-----FNksqqdAFL-------PHiedgtVIFI 138
Cdd:PRK07764 85 gpgsldVTEIDAAShGGVDDARELRERAFFAPAESRYKIFIIDEAHMvtpqgFN-----ALLkiveeppEH-----LKFI 154
|
....*
gi 1357211446 139 GATTE 143
Cdd:PRK07764 155 FATTE 159
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
41-261 |
2.65e-03 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 39.83 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 41 LRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQR----------------INAEVERIS-AVTSGI-KEIREAIDRAKQ-- 100
Cdd:COG1474 42 LRPALRGERPSNVLIYGPTGTGKTAVAKYVLEEleeeaeergvdvrvvyVNCRQASTRyRVLSRIlEELGSGEDIPSTgl 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 101 ------NRLADR-----KTILFV-DEVHRFNKSQQDAFL------------PHIedgTVIFIgatTENPSF--ELNNALL 154
Cdd:COG1474 122 stdelfDRLYEAlderdGVLVVVlDEIDYLVDDEGDDLLyqllraneelegARV---GVIGI---SNDLEFleNLDPRVK 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 155 SR--ARVYVLKSLTTAEIEQVLQQAVedpERGLGKErlILEENLLQVLAEYV---NGDARLALNCLELMVDMAEEtENGK 229
Cdd:COG1474 196 SSlgEEEIVFPPYDADELRDILEDRA---ELAFYDG--VLSDEVIPLIAALAaqeHGDARKAIDLLRVAGEIAER-EGSD 269
|
250 260 270
....*....|....*....|....*....|..
gi 1357211446 230 KIDRTLLKEVLGERQArfdkqgDRFYDLISAL 261
Cdd:COG1474 270 RVTEEHVREAREKIER------DRLLEVLRGL 295
|
|
| AAA_11 |
pfam13086 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
39-72 |
2.69e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins.
Pssm-ID: 404072 [Multi-domain] Cd Length: 248 Bit Score: 39.25 E-value: 2.69e-03
10 20 30
....*....|....*....|....*....|....*
gi 1357211446 39 KPLRKAIQAGHIhSMIlWGPPGTGKT-TLAEIIAQ 72
Cdd:pfam13086 4 EAIRSALSSSHF-TLI-QGPPGTGKTtTIVELIRQ 36
|
|
| RecA-like_VPS4 |
cd19521 |
ATPase domain of vacuolar protein sorting-associated protein 4; Vacuolar protein ... |
53-115 |
2.80e-03 |
|
ATPase domain of vacuolar protein sorting-associated protein 4; Vacuolar protein sorting-associated protein 4 (Vps4) is believed to be involved in intracellular protein transport out of a prevacuolar endosomal compartment. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410929 [Multi-domain] Cd Length: 170 Bit Score: 38.69 E-value: 2.80e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 53 MILWGPPGTGKTTLAEIIAQRINAEVERISA---VTSGIKE----IREAIDRAKQNrladRKTILFVDEV 115
Cdd:cd19521 43 ILLYGPPGTGKSYLAKAVATEANSTFFSVSSsdlVSKWMGEseklVKQLFAMAREN----KPSIIFIDEV 108
|
|
| COG0645 |
COG0645 |
Predicted kinase, contains AAA domain [General function prediction only]; |
57-78 |
2.89e-03 |
|
Predicted kinase, contains AAA domain [General function prediction only];
Pssm-ID: 440410 [Multi-domain] Cd Length: 164 Bit Score: 38.36 E-value: 2.89e-03
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
14-82 |
3.02e-03 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 40.21 E-value: 3.02e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1357211446 14 RPLAAKMRPTNLEQYFGQSHLIgegKPLRKAIQAGHIHSMILWGPPGTGK--TTLAEIIAQ----RINAEVERIS 82
Cdd:PRK04132 7 KPWVEKYRPQRLDDIVGQEHIV---KRLKHYVKTGSMPHLLFAGPPGVGKclTGDTKVIANgelfEIGELVEKIS 78
|
|
| RecA-like_CDC48_r2-like |
cd19528 |
second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or ... |
53-122 |
3.23e-03 |
|
second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP in metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the second of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r2-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410936 [Multi-domain] Cd Length: 161 Bit Score: 38.26 E-value: 3.23e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1357211446 53 MILWGPPGTGKTTLAEIIAQRINAEVERISA---VTSGIKE----IREAIDRAKqnrlADRKTILFVDEVHRFNKSQ 122
Cdd:cd19528 30 VLFYGPPGCGKTLLAKAIANECQANFISVKGpelLTMWFGEseanVRDIFDKAR----AAAPCVLFFDELDSIAKAR 102
|
|
| PTZ00454 |
PTZ00454 |
26S protease regulatory subunit 6B-like protein; Provisional |
54-115 |
3.99e-03 |
|
26S protease regulatory subunit 6B-like protein; Provisional
Pssm-ID: 240423 [Multi-domain] Cd Length: 398 Bit Score: 39.36 E-value: 3.99e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1357211446 54 ILWGPPGTGKTTLAEIIAQRINAEVerISAVTS---------GIKEIREAIDRAKQNRLAdrktILFVDEV 115
Cdd:PTZ00454 183 LLYGPPGTGKTMLAKAVAHHTTATF--IRVVGSefvqkylgeGPRMVRDVFRLARENAPS----IIFIDEV 247
|
|
| PRK10865 |
PRK10865 |
ATP-dependent chaperone ClpB; |
34-116 |
4.14e-03 |
|
ATP-dependent chaperone ClpB;
Pssm-ID: 182791 [Multi-domain] Cd Length: 857 Bit Score: 39.44 E-value: 4.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 34 LIGEGKPLRKAIQAGHIHSM---ILWGPPGTGKTTLAEIIAQRI-NAEVER-----------ISAVTSGIKEIREAIDRA 98
Cdd:PRK10865 180 VIGRDEEIRRTIQVLQRRTKnnpVLIGEPGVGKTAIVEGLAQRIiNGEVPEglkgrrvlaldMGALVAGAKYRGEFEERL 259
|
90 100
....*....|....*....|..
gi 1357211446 99 KQ--NRLADRK--TILFVDEVH 116
Cdd:PRK10865 260 KGvlNDLAKQEgnVILFIDELH 281
|
|
| Adk |
COG0563 |
Adenylate kinase or related kinase [Nucleotide transport and metabolism]; Adenylate kinase or ... |
54-97 |
4.16e-03 |
|
Adenylate kinase or related kinase [Nucleotide transport and metabolism]; Adenylate kinase or related kinase is part of the Pathway/BioSystem: Pyrimidine biosynthesis
Pssm-ID: 440329 [Multi-domain] Cd Length: 212 Bit Score: 38.57 E-value: 4.16e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1357211446 54 ILWGPPGTGKTTLAEIIAQRINaeVERIS-------AVTSGI---KEIREAIDR 97
Cdd:COG0563 4 ILLGPPGAGKGTQAKRLAEKYG--IPHIStgdmlraAVKAGTelgKKAKEYMDA 55
|
|
| DEXXQc_Mov10L1 |
cd18078 |
DEXXQ-box helicase domain of Mov10L1; Moloney leukemia virus 10-like protein 1 (Mov10L1) binds ... |
34-72 |
5.23e-03 |
|
DEXXQ-box helicase domain of Mov10L1; Moloney leukemia virus 10-like protein 1 (Mov10L1) binds Piwi-interacting RNA (piRNA) precursors to initiate piRNA processing. Mov10L1 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350836 [Multi-domain] Cd Length: 230 Bit Score: 38.50 E-value: 5.23e-03
10 20 30 40
....*....|....*....|....*....|....*....|
gi 1357211446 34 LIGEGKPLrkaiqaghihSMILWGPPGTGKT-TLAEIIAQ 72
Cdd:cd18078 14 LGGECRPL----------PYILFGPPGTGKTvTIIEAILQ 43
|
|
| DEXXQc_SF1 |
cd18043 |
DEXXQ-box helicase domain of Superfamily 1 helicases; Superfamily 1 (SF1) helicases are ... |
42-71 |
5.81e-03 |
|
DEXXQ-box helicase domain of Superfamily 1 helicases; Superfamily 1 (SF1) helicases are nucleic acid motor proteins that couple ATP hydrolysis to translocation along with the concomitant unwinding of DNA or RNA. This is central to many aspects of cellular DNA and RNA metabolism and accordingly, they are implicated in a wide range of nucleic acid processing events including DNA replication, recombination, and repair as well as many aspects of RNA metabolism. Superfamily 1 helicases are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350801 [Multi-domain] Cd Length: 127 Bit Score: 36.79 E-value: 5.81e-03
10 20 30
....*....|....*....|....*....|..
gi 1357211446 42 RKAI-QAGHIHSMILWGPPGTGKT-TLAEIIA 71
Cdd:cd18043 5 EAAIiSARNGKNVVIQGPPGTGKSqTIANIIA 36
|
|
| T7SS_EccA |
TIGR03922 |
type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the ... |
47-252 |
5.88e-03 |
|
type VII secretion AAA-ATPase EccA; This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 188437 [Multi-domain] Cd Length: 557 Bit Score: 39.06 E-value: 5.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 47 AGHIHSMILWGPPGTGKTTLAEIIAQRINA----------EVERISAVTSGIKEireaiDRAKQNRLADRKT--ILFVDE 114
Cdd:TIGR03922 309 AQTSNHMLFAGPPGTGKTTIARVVAKIYCGlgvlrkplvrEVSRADLIGQYIGE-----SEAKTNEIIDSALggVLFLDE 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 115 VHR-----------FNKSQQDAFLPHIED--GTVIFIGATTENPS---FELNNALLSR-ARVYVLKSLTTAEIEQVLQQA 177
Cdd:TIGR03922 384 AYTlvetgygqkdpFGLEAIDTLLARMENdrDRLVVIGAGYRKDLdkfLEVNEGLRSRfTRVIEFPSYSPDELVEIARRM 463
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1357211446 178 VEDPERGLGKERLILEENLLQVLAEY----VNGDARLALNCLelmvdmaeetENGKKIdRTLLKEVLGERQARFDKQGD 252
Cdd:TIGR03922 464 ATERDSVLDDAAADALLEAATTLAQDttpdANGDLRRGLDIA----------GNGRFV-RNVVERAEEERDFRLDHSDR 531
|
|
| CDC48 |
TIGR01243 |
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two ... |
53-115 |
6.33e-03 |
|
AAA family ATPase, CDC48 subfamily; This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Pssm-ID: 273521 [Multi-domain] Cd Length: 733 Bit Score: 39.12 E-value: 6.33e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 53 MILWGPPGTGKTTLAEIIAQRINAEV------ERISA-VTSGIKEIREAIDRAKQNRLAdrktILFVDEV 115
Cdd:TIGR01243 490 VLLFGPPGTGKTLLAKAVATESGANFiavrgpEILSKwVGESEKAIREIFRKARQAAPA----IIFFDEI 555
|
|
| COG1373 |
COG1373 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
54-120 |
7.06e-03 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440984 [Multi-domain] Cd Length: 405 Bit Score: 38.39 E-value: 7.06e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1357211446 54 ILWGPPGTGKTTLAEIIAQR------INAEVERI-SAVTSGIKEIREAIdrakqNRLADRKTILFVDEVHRFNK 120
Cdd:COG1373 24 VITGPRQVGKTTLLKQLAKElenilyINLDDPRLrALAEEDPDDLLEAL-----KELYPGKTYLFLDEIQRVPE 92
|
|
| ftsH |
CHL00176 |
cell division protein; Validated |
54-115 |
7.43e-03 |
|
cell division protein; Validated
Pssm-ID: 214386 [Multi-domain] Cd Length: 638 Bit Score: 38.88 E-value: 7.43e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1357211446 54 ILWGPPGTGKTTLAEIIAQRinAEVERISAVTS---------GIKEIREAIDRAKQNrladRKTILFVDEV 115
Cdd:CHL00176 220 LLVGPPGTGKTLLAKAIAGE--AEVPFFSISGSefvemfvgvGAARVRDLFKKAKEN----SPCIVFIDEI 284
|
|
| ATP-synt_ab |
pfam00006 |
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP ... |
57-112 |
8.80e-03 |
|
ATP synthase alpha/beta family, nucleotide-binding domain; This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.
Pssm-ID: 425417 [Multi-domain] Cd Length: 212 Bit Score: 37.34 E-value: 8.80e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1357211446 57 GPPGTGKTTLAEIIAQRINAEVERISAVtsGIK--EIREAIDRAKQNRLADRkTILFV 112
Cdd:pfam00006 21 GGSGVGKTVLAGMIARQASADVVVYALI--GERgrEVREFIEELLGSGALKR-TVVVV 75
|
|
| ExeA |
COG3267 |
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, ... |
57-116 |
9.16e-03 |
|
Type II secretory pathway ATPase component GspA/ExeA/MshM [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 442498 [Multi-domain] Cd Length: 261 Bit Score: 37.84 E-value: 9.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1357211446 57 GPPGTGKTTLAEIIAQRINAEVERISAVTSGIK--EIREAI---------------------DRAKQNRLADRKTILFVD 113
Cdd:COG3267 50 GEVGTGKTTLLRRLLERLPDDVKVAYIPNPQLSpaELLRAIadelglepkgaskadllrqlqEFLLELAAAGRRVVLIID 129
|
...
gi 1357211446 114 EVH 116
Cdd:COG3267 130 EAQ 132
|
|
| AAA_14 |
pfam13173 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
54-117 |
9.23e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 463799 [Multi-domain] Cd Length: 128 Bit Score: 36.41 E-value: 9.23e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1357211446 54 ILWGPPGTGKTTLAEIIAQR---------INAEVERISavtsgiKEIREAIDRAKQNRLADRKTILFVDEVHR 117
Cdd:pfam13173 6 VITGPRQVGKTTLLLQLIKEllppenilyINLDDPRLL------KLADFELLELFLELLYPGKTYLFLDEIQR 72
|
|
| YifB |
COG0606 |
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational ... |
47-68 |
9.29e-03 |
|
Predicted Mg-chelatase, contains ChlI-like and ATPase domains, YifB family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440371 [Multi-domain] Cd Length: 502 Bit Score: 38.10 E-value: 9.29e-03
|
| TIMELESS |
pfam04821 |
Timeless protein; The timeless gene in Drosophila melanogaster and its homologs in a number of ... |
191-221 |
9.91e-03 |
|
Timeless protein; The timeless gene in Drosophila melanogaster and its homologs in a number of other insects and mammals (including human) are involved in circadian rhythm control. This family includes a related proteins from a number of fungal species.
Pssm-ID: 461444 Cd Length: 273 Bit Score: 37.55 E-value: 9.91e-03
10 20 30
....*....|....*....|....*....|..
gi 1357211446 191 ILEENLLQVLAEYVNGD-ARLALNCLELMVDM 221
Cdd:pfam04821 39 LVQNDLLPILLQWTEGDgKKIALACLELLVNL 70
|
|
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