NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1359342038|gb|PRT11009|]
View 

ABC transporter permease [Bacillus toyonensis]

Protein Classification

Veg family protein( domain architecture ID 10008574)

Veg family protein similar to Bacillus subtilis protein Veg that stimulates biofilm formation via transcriptional activation of extracellular matrix genes

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
COG4466 COG4466
Uncharacterized conserved protein Veg, DUF1021 family [Function unknown];
1-79 1.96e-40

Uncharacterized conserved protein Veg, DUF1021 family [Function unknown];


:

Pssm-ID: 443563  Cd Length: 87  Bit Score: 128.00  E-value: 1.96e-40
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1359342038  1 MSKRLDEIKSELDHHLGQRLMLKANSGRRKTVEQSGVLAETYRSVFVVQLDQQEDALQRVSYSYADVLTETVELTFYGE 79
Cdd:COG4466    3 MPNTLAEIKKELESHVGKRVKLKANKGRKKIVEREGVLEETYPSVFVVELDQEENAFRRVSYSYSDVLTETVELTFCDD 81
 
Name Accession Description Interval E-value
COG4466 COG4466
Uncharacterized conserved protein Veg, DUF1021 family [Function unknown];
1-79 1.96e-40

Uncharacterized conserved protein Veg, DUF1021 family [Function unknown];


Pssm-ID: 443563  Cd Length: 87  Bit Score: 128.00  E-value: 1.96e-40
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1359342038  1 MSKRLDEIKSELDHHLGQRLMLKANSGRRKTVEQSGVLAETYRSVFVVQLDQQEDALQRVSYSYADVLTETVELTFYGE 79
Cdd:COG4466    3 MPNTLAEIKKELESHVGKRVKLKANKGRKKIVEREGVLEETYPSVFVVELDQEENAFRRVSYSYSDVLTETVELTFCDD 81
VEG pfam06257
Biofilm formation stimulator VEG; VEG is a family that is highly conserved among Gram-positive ...
 15-74 3.23e-30

Biofilm formation stimulator VEG; VEG is a family that is highly conserved among Gram-positive bacteria. It stimulates biofilm formation through inducing transcription of the tapA-sipW-tasA operon. The products of this operon are resposible for production of the amyloid fibre (TasA) component of the biofilm. Veg or a Veg-induced protein acts as an antirepressor of SinR - part of the major overall biofilm transcriptional control system - to regulate and stimulate biofilm formation. Veg is transcribed at high levels during both exponential growth and sporulation.


Pssm-ID: 461864  Cd Length: 61  Bit Score: 101.38  E-value: 3.23e-30
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359342038 15 HLGQRLMLKANSGRRKTVEQSGVLAETYRSVFVVQLDQQEDALQRVSYSYADVLTETVEL 74
Cdd:pfam06257  2 HIGQKVTVKANKGRKKTIEREGVLEETYPSVFVVKLDEDENNFRRVSYSYTDILTKTVEL 61
 
Name Accession Description Interval E-value
COG4466 COG4466
Uncharacterized conserved protein Veg, DUF1021 family [Function unknown];
1-79 1.96e-40

Uncharacterized conserved protein Veg, DUF1021 family [Function unknown];


Pssm-ID: 443563  Cd Length: 87  Bit Score: 128.00  E-value: 1.96e-40
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1359342038  1 MSKRLDEIKSELDHHLGQRLMLKANSGRRKTVEQSGVLAETYRSVFVVQLDQQEDALQRVSYSYADVLTETVELTFYGE 79
Cdd:COG4466    3 MPNTLAEIKKELESHVGKRVKLKANKGRKKIVEREGVLEETYPSVFVVELDQEENAFRRVSYSYSDVLTETVELTFCDD 81
VEG pfam06257
Biofilm formation stimulator VEG; VEG is a family that is highly conserved among Gram-positive ...
 15-74 3.23e-30

Biofilm formation stimulator VEG; VEG is a family that is highly conserved among Gram-positive bacteria. It stimulates biofilm formation through inducing transcription of the tapA-sipW-tasA operon. The products of this operon are resposible for production of the amyloid fibre (TasA) component of the biofilm. Veg or a Veg-induced protein acts as an antirepressor of SinR - part of the major overall biofilm transcriptional control system - to regulate and stimulate biofilm formation. Veg is transcribed at high levels during both exponential growth and sporulation.


Pssm-ID: 461864  Cd Length: 61  Bit Score: 101.38  E-value: 3.23e-30
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1359342038 15 HLGQRLMLKANSGRRKTVEQSGVLAETYRSVFVVQLDQQEDALQRVSYSYADVLTETVEL 74
Cdd:pfam06257  2 HIGQKVTVKANKGRKKTIEREGVLEETYPSVFVVKLDEDENNFRRVSYSYTDILTKTVEL 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH