View
Concise Results
Standard Results
Full Results
PD-(D/E)XK nuclease superfamily protein [Dyadobacter jiangsuensis]
Protein Classification
PD-(D/E)XK nuclease family protein ( domain architecture ID 11467507 )
PD-(D/E)XK nuclease family protein similar to ATP-dependent helicase/deoxyribonuclease subunit B (AddB), part of a heterodimer that acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease
List of domain hits
Name
Accession
Description
Interval
E-value
AddB
COG3857 ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
7-968
4.53e-53
ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
Pssm-ID: 443066 [Multi-domain]
Cd Length: 1019
Bit Score: 201.51
E-value: 4.53e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 7 LVAKR I LANHTSLDHVQIV VP TRRAAFFLMQE L ASETSEAMMSPGIMAIDDFVESICSLEIEDPVH LL F D ------ L YET 80
Cdd:COG3857 14 YLLEE I KEELKEGKPIILL VP EQMTFQAERAL L KRLGLGGSIRAQVLSFSRLAWRVLQETGGATRP LL S D agkrml L RKI 93
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 81 FR E IDPDVQ - F D R FM --- G WASV L LSDLDKIDQ Y LVKTDF L feylse AH A LARWQ E S L pegkslqgeggskqyfslf ENI 156
Cdd:COG3857 94 LE E HKDELK v F A R AA dkp G FIEQ L AELITELKR Y GITPED L ------ EE A AELLK E K L ------------------- RDL 148
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 157 NKV Y RSFRQR L IAKG k AYRGMAY R E LAE DIGSLAEA rp EG ER IY FA GF NA FT TS E RTIVT AL I K - AK KAEVLWDS D R --- 232
Cdd:COG3857 149 ALI Y EAYEEK L AGRY - IDSEDLL R L LAE KLEKSEFL -- EG AE IY ID GF TD FT PQ E LELLE AL L K k AK EVTITLTL D P del 225
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 233 -- YYMSEN T V --- V E AG K SLR --- E YQR S K E FG -- E W N WTGDDLLSTEKH I T I YGVP N ATLQTK - VA G E LYQQMK rf DSD 301
Cdd:COG3857 226 dl FSATGE T Y erl L E LA K ENG vev E FKK S P E LA hl E R N LFAYPPEEEPEG I E I IEAA N RRAEVE a VA R E IRRLVR -- EEG 303
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 302 EEPIPT A I V LA D ENLLL P MLYSLDQ E VR - DLNVTMGLSMRNSL L YT L VDGIF EL QQN vv E FR TKS gk MI R ------ IPKF 374
Cdd:COG3857 304 YRYRDI A V V VR D LEAYA P LIERVFA E YG i PYFIDEKRPLSHHP L VE L ILSLL EL VRS -- N FR YED -- VF R llktgl LRPL 379
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 375 GHKS ID KIL N HPFIRHYEHVALTP -- LE DGQTIIQRTLREITES N QV fls SEE L VALGD nh PL FQI L fth WQKNNAQQVI 452
Cdd:COG3857 380 SREE ID RLE N YVLAYGIRGRRWLE ry LE EEEELTDEEEEDLERL N EL --- RDR L LEPLL -- PL RER L --- KKAKTVREWA 451
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 453 RSF Y QLI E L L R ----------- E VYK D YKN A L E T E - YLYLFYT LL KQFEQTIEE ra E LIT L RTLKSFMFELIRQTRIPFS 520
Cdd:COG3857 452 EAL Y EFL E E L G vpekleewrea E EAG D LEE A R E H E q AWNALIE LL DELVEVLGD -- E KLS L EEFLRILESGLEELTFGLI 529
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 521 GEPISNL Q IM G MLET R A LDF ERIII L SV NEG TI P QAK R QNS L IPFD ----- AAQAVG L - PT HQHQEAVMSYH FYR L L Q RA 594
Cdd:COG3857 530 PPSLDQV Q VG G LDRA R G LDF KAVFV L GL NEG VF P ARP R EDG L LSDE ererl NELGLE L p PT SRERLLEERFL FYR A L T RA 609
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 595 SE - VHIL Y TSTNDAPGGGEK S RFVRQIEYELA E YNPKIRI E NKTVVFE T QQQQEL E EVVH ----- KDDALIAAIRAY L DG 668
Cdd:COG3857 610 SE r LYLS Y PLADEEGKALLP S PLIDRLRELFP E LEERSLL E EELEYIG T PESALS E LAAA lrqle LAPLWWDVYKWL L KL 689
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 669 kgi YPTH L NEFIR C SM QF Y L KHIAG vk E KE EV E E EL GMDKI GT WL HA S LER L ------- DHEFFL L DNDPS EE QIATVLR 741
Cdd:COG3857 690 --- SVSR L ETYAA C PF QF F L RYGLK -- L KE RE E Y EL DAPDR GT LF HA V LER F ykelkee GLDWAD L SDEEL EE LLEEAVE 764
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 742 E EFDR L FK G YVTDLGLN R IYYQIGEQQI --- LTF L RHH m A QKPRRKIL A A E QP ----- LHTRIQ L V L QGAYT p V R VG G K I 813
Cdd:COG3857 765 E LAPE L QN G ILLSSARY R YLLERLKRLL kra RRW L EEE - A RRSGFEPV A L E LS fgpeg GLPPLE L E L PNGRK - I R LR G R I 842
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 814 DRI ELA E -- G GT L YVM DYK T GS VELT gkqkladpvg REE V IR vdpdrkm G YVR QL WI Y e YLMYRRMK E ENGLKLR G TT Y n 891
Cdd:COG3857 843 DRI DRL E sd G RY L RII DYK S GS KKFD ---------- LDD V YY ------- G LAL QL PL Y - LDAALENL E GKEAEPA G AL Y - 903
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 892 fge YAV K SGFYSFRD P ------ K N L IANPL E IT E -------------- Q L APQ EF --- IEKSEVI L TDILNVM L DP D IPF 948
Cdd:COG3857 904 --- FHL K NPKLKAKK P lkklkm K G L LLDDP E VL E iiplkkdgsfknsk V L SEE EF eel LDHVREL L KEAGEEI L AG D FAI 980
1050 1060
....*....|....*....|..
gi 1369174257 949 R -- K T D D L T T CQ F C DFTG IC GR 968
Cdd:COG3857 981 N py R T K D R T A CQ Y C PYKS IC RF 1002
Name
Accession
Description
Interval
E-value
AddB
COG3857 ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
7-968
4.53e-53
ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
Pssm-ID: 443066 [Multi-domain]
Cd Length: 1019
Bit Score: 201.51
E-value: 4.53e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 7 LVAKR I LANHTSLDHVQIV VP TRRAAFFLMQE L ASETSEAMMSPGIMAIDDFVESICSLEIEDPVH LL F D ------ L YET 80
Cdd:COG3857 14 YLLEE I KEELKEGKPIILL VP EQMTFQAERAL L KRLGLGGSIRAQVLSFSRLAWRVLQETGGATRP LL S D agkrml L RKI 93
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 81 FR E IDPDVQ - F D R FM --- G WASV L LSDLDKIDQ Y LVKTDF L feylse AH A LARWQ E S L pegkslqgeggskqyfslf ENI 156
Cdd:COG3857 94 LE E HKDELK v F A R AA dkp G FIEQ L AELITELKR Y GITPED L ------ EE A AELLK E K L ------------------- RDL 148
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 157 NKV Y RSFRQR L IAKG k AYRGMAY R E LAE DIGSLAEA rp EG ER IY FA GF NA FT TS E RTIVT AL I K - AK KAEVLWDS D R --- 232
Cdd:COG3857 149 ALI Y EAYEEK L AGRY - IDSEDLL R L LAE KLEKSEFL -- EG AE IY ID GF TD FT PQ E LELLE AL L K k AK EVTITLTL D P del 225
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 233 -- YYMSEN T V --- V E AG K SLR --- E YQR S K E FG -- E W N WTGDDLLSTEKH I T I YGVP N ATLQTK - VA G E LYQQMK rf DSD 301
Cdd:COG3857 226 dl FSATGE T Y erl L E LA K ENG vev E FKK S P E LA hl E R N LFAYPPEEEPEG I E I IEAA N RRAEVE a VA R E IRRLVR -- EEG 303
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 302 EEPIPT A I V LA D ENLLL P MLYSLDQ E VR - DLNVTMGLSMRNSL L YT L VDGIF EL QQN vv E FR TKS gk MI R ------ IPKF 374
Cdd:COG3857 304 YRYRDI A V V VR D LEAYA P LIERVFA E YG i PYFIDEKRPLSHHP L VE L ILSLL EL VRS -- N FR YED -- VF R llktgl LRPL 379
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 375 GHKS ID KIL N HPFIRHYEHVALTP -- LE DGQTIIQRTLREITES N QV fls SEE L VALGD nh PL FQI L fth WQKNNAQQVI 452
Cdd:COG3857 380 SREE ID RLE N YVLAYGIRGRRWLE ry LE EEEELTDEEEEDLERL N EL --- RDR L LEPLL -- PL RER L --- KKAKTVREWA 451
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 453 RSF Y QLI E L L R ----------- E VYK D YKN A L E T E - YLYLFYT LL KQFEQTIEE ra E LIT L RTLKSFMFELIRQTRIPFS 520
Cdd:COG3857 452 EAL Y EFL E E L G vpekleewrea E EAG D LEE A R E H E q AWNALIE LL DELVEVLGD -- E KLS L EEFLRILESGLEELTFGLI 529
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 521 GEPISNL Q IM G MLET R A LDF ERIII L SV NEG TI P QAK R QNS L IPFD ----- AAQAVG L - PT HQHQEAVMSYH FYR L L Q RA 594
Cdd:COG3857 530 PPSLDQV Q VG G LDRA R G LDF KAVFV L GL NEG VF P ARP R EDG L LSDE ererl NELGLE L p PT SRERLLEERFL FYR A L T RA 609
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 595 SE - VHIL Y TSTNDAPGGGEK S RFVRQIEYELA E YNPKIRI E NKTVVFE T QQQQEL E EVVH ----- KDDALIAAIRAY L DG 668
Cdd:COG3857 610 SE r LYLS Y PLADEEGKALLP S PLIDRLRELFP E LEERSLL E EELEYIG T PESALS E LAAA lrqle LAPLWWDVYKWL L KL 689
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 669 kgi YPTH L NEFIR C SM QF Y L KHIAG vk E KE EV E E EL GMDKI GT WL HA S LER L ------- DHEFFL L DNDPS EE QIATVLR 741
Cdd:COG3857 690 --- SVSR L ETYAA C PF QF F L RYGLK -- L KE RE E Y EL DAPDR GT LF HA V LER F ykelkee GLDWAD L SDEEL EE LLEEAVE 764
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 742 E EFDR L FK G YVTDLGLN R IYYQIGEQQI --- LTF L RHH m A QKPRRKIL A A E QP ----- LHTRIQ L V L QGAYT p V R VG G K I 813
Cdd:COG3857 765 E LAPE L QN G ILLSSARY R YLLERLKRLL kra RRW L EEE - A RRSGFEPV A L E LS fgpeg GLPPLE L E L PNGRK - I R LR G R I 842
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 814 DRI ELA E -- G GT L YVM DYK T GS VELT gkqkladpvg REE V IR vdpdrkm G YVR QL WI Y e YLMYRRMK E ENGLKLR G TT Y n 891
Cdd:COG3857 843 DRI DRL E sd G RY L RII DYK S GS KKFD ---------- LDD V YY ------- G LAL QL PL Y - LDAALENL E GKEAEPA G AL Y - 903
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 892 fge YAV K SGFYSFRD P ------ K N L IANPL E IT E -------------- Q L APQ EF --- IEKSEVI L TDILNVM L DP D IPF 948
Cdd:COG3857 904 --- FHL K NPKLKAKK P lkklkm K G L LLDDP E VL E iiplkkdgsfknsk V L SEE EF eel LDHVREL L KEAGEEI L AG D FAI 980
1050 1060
....*....|....*....|..
gi 1369174257 949 R -- K T D D L T T CQ F C DFTG IC GR 968
Cdd:COG3857 981 N py R T K D R T A CQ Y C PYKS IC RF 1002
PDDEXK_1
pfam12705 PD-(D/E)XK nuclease superfamily; Members of this family belong to the PD-(D/E)XK nuclease ...
673-966
2.02e-20
PD-(D/E)XK nuclease superfamily; Members of this family belong to the PD-(D/E)XK nuclease superfamily
Pssm-ID: 432731 [Multi-domain]
Cd Length: 250
Bit Score: 91.83
E-value: 2.02e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 673 P TH L NEFIR C SMQ F Y L KHIA G VK E K EE VEEEL gmdk I GT WL HA S LER L d HEFFL L DNDPS EE QIATV L R E EFDR L FKG yv 752
Cdd:pfam12705 4 P SR L ETYLT C PLR F F L RYLL G LR E D EE LDAPD ---- L GT LV HA A LER F - YRWGR L PEEDL EE LLQAL L E E LWPE L GLQ -- 76
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 753 t DLG L N R IYYQI G EQ qiltflr HHMAQKPR R KILAAEQPLHTRIQLVLQGAY -- T P VR VG G K IDR IE L AEG G T L YVM DYK 830
Cdd:pfam12705 77 - SEI L P R LPWLA G RL ------- RRRLERML R RLAEWLRARRGFRPVAVELGF gg T T VR LV G R IDR VD L DGE G Y L RII DYK 148
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 831 TGS VELT gkqkladpvgreevirv DP D RKMGYVR QL WI Y e Y L MYRRMKEEN G L klrgttynfgey AVKSGFYSFR DP K nl 910
Cdd:pfam12705 149 TGS APPQ ----------------- SE D LDLYEGL QL LL Y - L L ALAAGEKAL G G ------------ PAGALYLRLD DP L -- 196
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1369174257 911 IANPLEITEQLAPQEFIEKSEVI L TDILNVM L DPDI P F R KTDD ltt C QF C DFTG IC 966
Cdd:pfam12705 197 KKDEEVVEPMVLTEDEFDALLQE L RELAEEI L AGEF P A R PGKK --- C RY C PYRS IC 249
TIGR03623
TIGR03623 probable DNA repair protein; Members of this protein family are bacterial proteins of about ...
482-836
2.42e-08
probable DNA repair protein; Members of this protein family are bacterial proteins of about 900 amino acids in length. Members show extended homology to proteins in TIGR02786, the AddB protein of double-strand break repair via homologous recombination. Members of this family, therefore, may be DNA repair proteins.
Pssm-ID: 274682 [Multi-domain]
Cd Length: 874
Bit Score: 58.13
E-value: 2.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 482 Y TLL K QF E QTIE E R A E L ITLRTLKS F -- MFE L I RQ -- TRIP F SG E - P ISNL Q IM G M LE TRA L D F ERIIILSVNEGTI P QA 556
Cdd:TIGR03623 409 Y QAV K AW E ELLA E F A A L DLVSPALT F se ALR L L RQ la AETL F QP E t P EAPI Q VL G L LE AAG L Q F DALWVMGLTDEQW P AP 488
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 557 K R Q N SLI P FDAAQ AVG L P t H QHQ E AVMS Y H --- FY RLL QR A S EV HIL Y TSTN dap G GG E K -- S RFVRQIE ------ Y ELA 625
Cdd:TIGR03623 489 P R P N PFL P LALQR AVG M P - H ASA E RELD Y A rqv TQ RLL KS A P EV VFS Y PRRD --- G DR E L rp S PLIAHLP lkaeed A ELA 564
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 626 E Y NPKI rienktvvfetqqqqeleevvhkdd A LI AA IR --- AYL D GKGI y P THLN E F I R ----------- C SMQFYLK H I 691
Cdd:TIGR03623 565 D Y QDLA ------------------------- A AV AA GS rle VLD D AQAP - P LAAG E R I S ggtgllkaqaa C PFRAFAQ H R 618
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 692 A G VKEK EE VE ee L G M D KI -- GT WL H AS LE ---- RL DHEFF L LDN D PS E ------ E Q I ATV L R EE FD R --- L F KGYVTD L G 756
Cdd:TIGR03623 619 L G ARAL EE PV -- D G L D AL er GT LV H RV LE lfwe RL KNQEA L NAL D EA E leqlia E A I EEA L A EE RA R hsq T F PERFLE L E 696
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 757 LN R I yyqig E Q QI L TF L RHHM a QK P RRKIL A A EQ PLHTR I Q lvlqgayt PVRVGGK IDRI - E LA E G GT L y VM DYKTG SVE 835
Cdd:TIGR03623 697 QE R L ----- L Q LL L EW L ELER - KR P PFEVV A T EQ NHSIE I G -------- GLELKLR IDRI d R LA D G SR L - II DYKTG APS 761
.
gi 1369174257 836 L 836
Cdd:TIGR03623 762 V 762
Name
Accession
Description
Interval
E-value
AddB
COG3857 ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
7-968
4.53e-53
ATP-dependent helicase/DNAse subunit B [Replication, recombination and repair];
Pssm-ID: 443066 [Multi-domain]
Cd Length: 1019
Bit Score: 201.51
E-value: 4.53e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 7 LVAKR I LANHTSLDHVQIV VP TRRAAFFLMQE L ASETSEAMMSPGIMAIDDFVESICSLEIEDPVH LL F D ------ L YET 80
Cdd:COG3857 14 YLLEE I KEELKEGKPIILL VP EQMTFQAERAL L KRLGLGGSIRAQVLSFSRLAWRVLQETGGATRP LL S D agkrml L RKI 93
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 81 FR E IDPDVQ - F D R FM --- G WASV L LSDLDKIDQ Y LVKTDF L feylse AH A LARWQ E S L pegkslqgeggskqyfslf ENI 156
Cdd:COG3857 94 LE E HKDELK v F A R AA dkp G FIEQ L AELITELKR Y GITPED L ------ EE A AELLK E K L ------------------- RDL 148
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 157 NKV Y RSFRQR L IAKG k AYRGMAY R E LAE DIGSLAEA rp EG ER IY FA GF NA FT TS E RTIVT AL I K - AK KAEVLWDS D R --- 232
Cdd:COG3857 149 ALI Y EAYEEK L AGRY - IDSEDLL R L LAE KLEKSEFL -- EG AE IY ID GF TD FT PQ E LELLE AL L K k AK EVTITLTL D P del 225
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 233 -- YYMSEN T V --- V E AG K SLR --- E YQR S K E FG -- E W N WTGDDLLSTEKH I T I YGVP N ATLQTK - VA G E LYQQMK rf DSD 301
Cdd:COG3857 226 dl FSATGE T Y erl L E LA K ENG vev E FKK S P E LA hl E R N LFAYPPEEEPEG I E I IEAA N RRAEVE a VA R E IRRLVR -- EEG 303
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 302 EEPIPT A I V LA D ENLLL P MLYSLDQ E VR - DLNVTMGLSMRNSL L YT L VDGIF EL QQN vv E FR TKS gk MI R ------ IPKF 374
Cdd:COG3857 304 YRYRDI A V V VR D LEAYA P LIERVFA E YG i PYFIDEKRPLSHHP L VE L ILSLL EL VRS -- N FR YED -- VF R llktgl LRPL 379
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 375 GHKS ID KIL N HPFIRHYEHVALTP -- LE DGQTIIQRTLREITES N QV fls SEE L VALGD nh PL FQI L fth WQKNNAQQVI 452
Cdd:COG3857 380 SREE ID RLE N YVLAYGIRGRRWLE ry LE EEEELTDEEEEDLERL N EL --- RDR L LEPLL -- PL RER L --- KKAKTVREWA 451
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 453 RSF Y QLI E L L R ----------- E VYK D YKN A L E T E - YLYLFYT LL KQFEQTIEE ra E LIT L RTLKSFMFELIRQTRIPFS 520
Cdd:COG3857 452 EAL Y EFL E E L G vpekleewrea E EAG D LEE A R E H E q AWNALIE LL DELVEVLGD -- E KLS L EEFLRILESGLEELTFGLI 529
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 521 GEPISNL Q IM G MLET R A LDF ERIII L SV NEG TI P QAK R QNS L IPFD ----- AAQAVG L - PT HQHQEAVMSYH FYR L L Q RA 594
Cdd:COG3857 530 PPSLDQV Q VG G LDRA R G LDF KAVFV L GL NEG VF P ARP R EDG L LSDE ererl NELGLE L p PT SRERLLEERFL FYR A L T RA 609
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 595 SE - VHIL Y TSTNDAPGGGEK S RFVRQIEYELA E YNPKIRI E NKTVVFE T QQQQEL E EVVH ----- KDDALIAAIRAY L DG 668
Cdd:COG3857 610 SE r LYLS Y PLADEEGKALLP S PLIDRLRELFP E LEERSLL E EELEYIG T PESALS E LAAA lrqle LAPLWWDVYKWL L KL 689
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 669 kgi YPTH L NEFIR C SM QF Y L KHIAG vk E KE EV E E EL GMDKI GT WL HA S LER L ------- DHEFFL L DNDPS EE QIATVLR 741
Cdd:COG3857 690 --- SVSR L ETYAA C PF QF F L RYGLK -- L KE RE E Y EL DAPDR GT LF HA V LER F ykelkee GLDWAD L SDEEL EE LLEEAVE 764
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 742 E EFDR L FK G YVTDLGLN R IYYQIGEQQI --- LTF L RHH m A QKPRRKIL A A E QP ----- LHTRIQ L V L QGAYT p V R VG G K I 813
Cdd:COG3857 765 E LAPE L QN G ILLSSARY R YLLERLKRLL kra RRW L EEE - A RRSGFEPV A L E LS fgpeg GLPPLE L E L PNGRK - I R LR G R I 842
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 814 DRI ELA E -- G GT L YVM DYK T GS VELT gkqkladpvg REE V IR vdpdrkm G YVR QL WI Y e YLMYRRMK E ENGLKLR G TT Y n 891
Cdd:COG3857 843 DRI DRL E sd G RY L RII DYK S GS KKFD ---------- LDD V YY ------- G LAL QL PL Y - LDAALENL E GKEAEPA G AL Y - 903
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 892 fge YAV K SGFYSFRD P ------ K N L IANPL E IT E -------------- Q L APQ EF --- IEKSEVI L TDILNVM L DP D IPF 948
Cdd:COG3857 904 --- FHL K NPKLKAKK P lkklkm K G L LLDDP E VL E iiplkkdgsfknsk V L SEE EF eel LDHVREL L KEAGEEI L AG D FAI 980
1050 1060
....*....|....*....|..
gi 1369174257 949 R -- K T D D L T T CQ F C DFTG IC GR 968
Cdd:COG3857 981 N py R T K D R T A CQ Y C PYKS IC RF 1002
COG3893
COG3893 Inactivated superfamily I helicase [Replication, recombination and repair];
1-850
4.14e-50
Inactivated superfamily I helicase [Replication, recombination and repair];
Pssm-ID: 443100 [Multi-domain]
Cd Length: 965
Bit Score: 191.93
E-value: 4.14e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 1 MPS FL NLV A KRI LA NH ---- TS L DH V Q I VV PTRRAA FF L MQELASETSE A MMS P G I MAID D FV E SICS L EI --- ED P VHL 73
Cdd:COG3893 9 GAP FL DAL A AGL LA RL agdp LA L AR V T I LL PTRRAA RA L REAFLRLLGR A LLL P R I RPLG D LD E DELL L DL ppa IS P LER 88
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 74 LFD L YETF R EIDPDVQ --- FDRFMGW A SV L LSDL D KIDQYL V KTDF L FEYLSEAH A l AR WQ ES L pegkslqgeggskqyf 150
Cdd:COG3893 89 RLL L ARLV R RWADALV pas PADALDL A DS L ARLM D ELETEG V DLEA L ADLVPDDL A - GH WQ RT L ---------------- 151
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 151 slf ENINK V YRSFRQR L IAK G KAYRGMAY R E L A E DIGSLAE A R P E G e RIYF AG FNAF T TSERTIVT A LIKAKKAE V LWD - 229
Cdd:COG3893 152 --- DFLKI V TEAWPAI L AER G LIDPAARR R A L L E ALAARWR A A P A G - PVIA AG STGS T PATARLLA A VARLPQGA V VLP g 227
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 230 ------------------------- S DR YYMSENT V VEA G KSLREYQ R SKEFG E ---------- W NWT G DDL L ste KHI T 274
Cdd:COG3893 228 ldldldeaawaalaedhpqyglkrl L DR LGVTRED V RPW G ATPALPA R ARLLS E alrpaettda W RDL G AAA L --- AGL T 304
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 275 IYGVPNATLQTKVAGE - L YQQM krfdsd EEP I - PT A I V LA D EN L LLPMLYS L DQEVRDLNVTM G LSMRNSLLYT L VDGIF 352
Cdd:COG3893 305 LIEAADPEEEALAIAL a L REAL ------ EEP G r TA A L V TP D RA L ARRVAAE L ERWGIEVDDSA G WPLSTTPAGA L LRLLL 378
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 353 EL QQN vvefrtksgkmirip KFGHKSIDKI L N HP FI R ------- H YEH V AL tp LE DG --- QTIIQRT L REITESNQVFL - 421
Cdd:COG3893 379 EL AAE --------------- PLAPVALLAL L K HP LV R lglgrgd H RRA V RA -- LE LA lrr GGRPAPG L AGLRAALARAR p 441
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 422 - SS E ELV AL G D N ----- H PL FQIL ft HWQ K NNAQQVIRSFYQ L I E L L REVYKDYKN AL ET - E YLYLFYT LL KQFEQTIEE 494
Cdd:COG3893 442 d DA E AAA AL L D R leaal A PL LALF -- AAG K RPLADWLAALRA L L E A L GADEEGGED AL WA g E AGEALLE LL AELAAAAGA 519
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 495 RAE L i TLRTLKSFMFE L IRQ T RIPFS G E P ISNL QI M G M LE T R ALD F ERI I ILSV NEG TI P Q A K R QNSLIPFDAAQ A V GLP 574
Cdd:COG3893 520 GGP L - SAAEYPALLRA L LEG T TVRPP G G P HPRV QI L G L LE A R LQR F DAV I LGGL NEG VW P P A P R PDPWLSRPMRR A L GLP 598
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 575 T HQHQEAVMSYH F YRL L q R A S EV HILY - TSTND AP gg GEK SR FVRQI E YE L AEYNPKIRIENKTVVFETQQQQELEEVVH 653
Cdd:COG3893 599 T PERRIGLAAHD F AQA L - G A P EV VLSR a RRSDG AP -- TVP SR WLQRL E AL L GGAALAAMGARWLAWARALDRPAPVAPAA 675
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 654 KDDALIAAI R A yldgkgiy P THLNEF I RCSMQFYLKHIAGVKEKEEVEEELGM D KIGTWLHAS L ERLDH EFF LLDNDPSE 733
Cdd:COG3893 676 RPAPKPPVA R R -------- P RLSSVT I ETLLRDPPYAYYARRLLLLLLLPPLA D PPAAARGGL L HHALL EFF EREPPALP 747
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 734 EQI A TV L REEFDRLFKGYVTDLGLNRIYYQIGEQQILT F LR hh MAQKP RR KILAA E QPLHTRIQLV L Q G AYTPVRV ggk I 813
Cdd:COG3893 748 ADA A AA L LLALAEALLALAAAPAAAAAWWARRLRRAAA F AA -- AEEER RR ALARE E AEEEGGRLAL L E G GLLLLLR --- R 822
890 900 910
....*....|....*....|....*....|....*..
gi 1369174257 814 DRIELAE G GTLYVM D Y KT GSVELTG K QK L A D PVGREE 850
Cdd:COG3893 823 RDRDDDD G DGDGGD D D KT TTTGPPA K KL L L D LQLLLL 859
Slr0479
COG2887 RecB family exonuclease [Replication, recombination and repair];
673-966
1.56e-28
RecB family exonuclease [Replication, recombination and repair];
Pssm-ID: 442133 [Multi-domain]
Cd Length: 248
Bit Score: 115.13
E-value: 1.56e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 673 P THLNEFI RC SMQF Y LKH I A G VKEKE E VE ee LGMDKI GT WL HA S LER L dhe FF L LDNDPSE E QIATV L R E EFDR L FKG yv 752
Cdd:COG2887 5 P SRIETLL RC PLRY Y ARY I L G LRDPL E PP -- PDAADR GT LV HA V LER F --- YK L PADELPA E ELLAL L E E AWAE L GFE -- 77
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 753 t D LGLNRIYYQIG E QQILT FL RHH m AQKPRRKIL A A E QPLHTRIQL vlqgayt P VR VG G K IDRI ELAEG G T L Y V M DYKTG 832
Cdd:COG2887 78 - D PWAAALWLERA E RLLEA FL EWE - RAPAGLEPV A V E VEFELELPG ------- G VR LR G R IDRI DRLPD G R L V V V DYKTG 148
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 833 SVEL T GKQKLA DP vgreevirvdpdrkmgyvr QL WI Y EYLMY R RMK eenglklrgttynf G EYAVKSGFYSFR D PKNLI a 912
Cdd:COG2887 149 KAPS T KDEAGE DP ------------------- QL AL Y ALALE R GFE -------------- G LVPAGARLVYLG D LGKKK - 194
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1369174257 913 n P L EIT E qlapq E FI E KS E VI L TDILNVML DP DI PF RKTDDLTT C QF CD FTGI C 966
Cdd:COG2887 195 - V L DPL E ----- E EL E EA E ER L EELAAAIA DP EG PF PARPNPPL C RY CD YRHL C 242
PDDEXK_1
pfam12705 PD-(D/E)XK nuclease superfamily; Members of this family belong to the PD-(D/E)XK nuclease ...
673-966
2.02e-20
PD-(D/E)XK nuclease superfamily; Members of this family belong to the PD-(D/E)XK nuclease superfamily
Pssm-ID: 432731 [Multi-domain]
Cd Length: 250
Bit Score: 91.83
E-value: 2.02e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 673 P TH L NEFIR C SMQ F Y L KHIA G VK E K EE VEEEL gmdk I GT WL HA S LER L d HEFFL L DNDPS EE QIATV L R E EFDR L FKG yv 752
Cdd:pfam12705 4 P SR L ETYLT C PLR F F L RYLL G LR E D EE LDAPD ---- L GT LV HA A LER F - YRWGR L PEEDL EE LLQAL L E E LWPE L GLQ -- 76
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 753 t DLG L N R IYYQI G EQ qiltflr HHMAQKPR R KILAAEQPLHTRIQLVLQGAY -- T P VR VG G K IDR IE L AEG G T L YVM DYK 830
Cdd:pfam12705 77 - SEI L P R LPWLA G RL ------- RRRLERML R RLAEWLRARRGFRPVAVELGF gg T T VR LV G R IDR VD L DGE G Y L RII DYK 148
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 831 TGS VELT gkqkladpvgreevirv DP D RKMGYVR QL WI Y e Y L MYRRMKEEN G L klrgttynfgey AVKSGFYSFR DP K nl 910
Cdd:pfam12705 149 TGS APPQ ----------------- SE D LDLYEGL QL LL Y - L L ALAAGEKAL G G ------------ PAGALYLRLD DP L -- 196
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 1369174257 911 IANPLEITEQLAPQEFIEKSEVI L TDILNVM L DPDI P F R KTDD ltt C QF C DFTG IC 966
Cdd:pfam12705 197 KKDEEVVEPMVLTEDEFDALLQE L RELAEEI L AGEF P A R PGKK --- C RY C PYRS IC 249
TIGR03623
TIGR03623 probable DNA repair protein; Members of this protein family are bacterial proteins of about ...
482-836
2.42e-08
probable DNA repair protein; Members of this protein family are bacterial proteins of about 900 amino acids in length. Members show extended homology to proteins in TIGR02786, the AddB protein of double-strand break repair via homologous recombination. Members of this family, therefore, may be DNA repair proteins.
Pssm-ID: 274682 [Multi-domain]
Cd Length: 874
Bit Score: 58.13
E-value: 2.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 482 Y TLL K QF E QTIE E R A E L ITLRTLKS F -- MFE L I RQ -- TRIP F SG E - P ISNL Q IM G M LE TRA L D F ERIIILSVNEGTI P QA 556
Cdd:TIGR03623 409 Y QAV K AW E ELLA E F A A L DLVSPALT F se ALR L L RQ la AETL F QP E t P EAPI Q VL G L LE AAG L Q F DALWVMGLTDEQW P AP 488
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 557 K R Q N SLI P FDAAQ AVG L P t H QHQ E AVMS Y H --- FY RLL QR A S EV HIL Y TSTN dap G GG E K -- S RFVRQIE ------ Y ELA 625
Cdd:TIGR03623 489 P R P N PFL P LALQR AVG M P - H ASA E RELD Y A rqv TQ RLL KS A P EV VFS Y PRRD --- G DR E L rp S PLIAHLP lkaeed A ELA 564
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 626 E Y NPKI rienktvvfetqqqqeleevvhkdd A LI AA IR --- AYL D GKGI y P THLN E F I R ----------- C SMQFYLK H I 691
Cdd:TIGR03623 565 D Y QDLA ------------------------- A AV AA GS rle VLD D AQAP - P LAAG E R I S ggtgllkaqaa C PFRAFAQ H R 618
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 692 A G VKEK EE VE ee L G M D KI -- GT WL H AS LE ---- RL DHEFF L LDN D PS E ------ E Q I ATV L R EE FD R --- L F KGYVTD L G 756
Cdd:TIGR03623 619 L G ARAL EE PV -- D G L D AL er GT LV H RV LE lfwe RL KNQEA L NAL D EA E leqlia E A I EEA L A EE RA R hsq T F PERFLE L E 696
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 757 LN R I yyqig E Q QI L TF L RHHM a QK P RRKIL A A EQ PLHTR I Q lvlqgayt PVRVGGK IDRI - E LA E G GT L y VM DYKTG SVE 835
Cdd:TIGR03623 697 QE R L ----- L Q LL L EW L ELER - KR P PFEVV A T EQ NHSIE I G -------- GLELKLR IDRI d R LA D G SR L - II DYKTG APS 761
.
gi 1369174257 836 L 836
Cdd:TIGR03623 762 V 762
addB_alphas
TIGR02786 double-strand break repair protein AddB, alphaproteobacterial type; AddAB is a system well ...
526-840
3.56e-08
double-strand break repair protein AddB, alphaproteobacterial type; AddAB is a system well described in the Firmicutes as a replacement for RecBCD in many prokaryotes for the repair of double stranded break DNA damage. More recently, a distantly related gene pair conserved in many alphaproteobacteria was shown also to function in double-stranded break repair in Rhizobium etli. This family consists of AddB proteins of the alphaproteobacteial type. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274300 [Multi-domain]
Cd Length: 1021
Bit Score: 57.83
E-value: 3.56e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 526 NLQ I M G M LE T R ALDFERII I LSV NEG TI P Q A K R QNSLIPFDAAQAV GLP THQHQEAVMSYH F YRL L qra SEVHILY T ST - 604
Cdd:TIGR02786 606 RIF I W G A LE A R LQTADLVV I GGL NEG VW P P A P R NDPFLSRPMRHEL GLP PPERRIGLSAHD F QQA L --- GAKEVVL T RA a 682
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 605 -- ND AP G gg EK SR FVRQI E YELAE ynpkirienktv VFETQQQQEL E EVV H KDD AL IAAIRA ------------ YLDGKG 670
Cdd:TIGR02786 683 rs GG AP A -- VP SR WLQRL E ALAGA ------------ DVLEEMRRRG E RYL H WAR AL DEPQDV apatrpaprppv ADRPRH 748
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 671 IYP T HLNEFI R CSMQF Y LK HI AGVKEKEEVEEELGMDKI GT WL H AS LER ldhe F FLLDN DP SEEQI A TV LR EEFDRL F KG 750
Cdd:TIGR02786 749 FSV T EIETLR R DPYAI Y AR HI LKLRPLDPLDRDPEAADR GT LI H DI LER ---- F VREYP DP LPADA A DA LR KIGRAE F AS 824
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1369174257 751 YVTDLGLNRIYYQIGEQQILT F LRHHM A QKPRRKILA AE Q pl HT R IQ LV LQ gay TPVRVG G KI DRI ELAEG G TLYVM DYK 830
Cdd:TIGR02786 825 LNLPPTAEALWWPRFARAADW F ADWER A RRLDVRRIF AE A -- RG R KE LV GE --- RGFTLS G RA DRI DRTPD G SAAIL DYK 899
330
....*....|
gi 1369174257 831 TG SVE l T GKQ 840
Cdd:TIGR02786 900 TG APP - S GKQ 908
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
