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Conserved domains on  [gi|1374806689|gb|PTG71478|]
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hypothetical protein BU676_00785 [Staphylococcus chromogenes]

Protein Classification

YneF family protein( domain architecture ID 10007960)

YneF family protein similar to Lactococcus lactis UPF0154 protein YnbE

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YneF COG3763
Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];
23-75 5.89e-16

Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];


:

Pssm-ID: 442977  Cd Length: 71  Bit Score: 65.34  E-value: 5.89e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1374806689 23 VGGFFLARKYMMDYLKKNPPINEEMLRMMMMQMGQKPSQKKINQMMTMMNKNM 75
Cdd:COG3763   19 AGGFFIARKYMKKYLKKNPPINEDMIRAMMMQMGQKPSEKKINQMMNQMKKQK 71
 
Name Accession Description Interval E-value
YneF COG3763
Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];
23-75 5.89e-16

Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];


Pssm-ID: 442977  Cd Length: 71  Bit Score: 65.34  E-value: 5.89e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1374806689 23 VGGFFLARKYMMDYLKKNPPINEEMLRMMMMQMGQKPSQKKINQMMTMMNKNM 75
Cdd:COG3763   19 AGGFFIARKYMKKYLKKNPPINEDMIRAMMMQMGQKPSEKKINQMMNQMKKQK 71
UPF0154 pfam03672
Uncharacterized protein family (UPF0154); This family contains a set of short bacterial ...
 23-73 5.65e-14

Uncharacterized protein family (UPF0154); This family contains a set of short bacterial proteins of unknown function.


Pssm-ID: 427437  Cd Length: 60  Bit Score: 59.92  E-value: 5.65e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1374806689 23 VGGFFLARKYMMDYLKKNPPINEEMLRMMMMQMGQKPSQKKINQMMTMMNK 73
Cdd:pfam03672 10 VGGFFIARKYMEKQLKENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMKK 60
PRK01844 PRK01844
YneF family protein;
25-75 1.73e-13

YneF family protein;


Pssm-ID: 100947  Cd Length: 72  Bit Score: 58.87  E-value: 1.73e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1374806689 25 GFFLARKYMMDYLKKNPPINEEMLRMMMMQMGQKPSQKKINQMMTMMNKNM 75
Cdd:PRK01844  21 GFFIARKYMMNYLQKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAMNKQQ 71
 
Name Accession Description Interval E-value
YneF COG3763
Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];
23-75 5.89e-16

Uncharacterized conserved protein YneF, UPF0154 family [Function unknown];


Pssm-ID: 442977  Cd Length: 71  Bit Score: 65.34  E-value: 5.89e-16
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1374806689 23 VGGFFLARKYMMDYLKKNPPINEEMLRMMMMQMGQKPSQKKINQMMTMMNKNM 75
Cdd:COG3763   19 AGGFFIARKYMKKYLKKNPPINEDMIRAMMMQMGQKPSEKKINQMMNQMKKQK 71
UPF0154 pfam03672
Uncharacterized protein family (UPF0154); This family contains a set of short bacterial ...
 23-73 5.65e-14

Uncharacterized protein family (UPF0154); This family contains a set of short bacterial proteins of unknown function.


Pssm-ID: 427437  Cd Length: 60  Bit Score: 59.92  E-value: 5.65e-14
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1374806689 23 VGGFFLARKYMMDYLKKNPPINEEMLRMMMMQMGQKPSQKKINQMMTMMNK 73
Cdd:pfam03672 10 VGGFFIARKYMEKQLKENPPINEKMIRAMMMQMGRKPSEKQIKQMMRSMKK 60
PRK01844 PRK01844
YneF family protein;
25-75 1.73e-13

YneF family protein;


Pssm-ID: 100947  Cd Length: 72  Bit Score: 58.87  E-value: 1.73e-13
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 1374806689 25 GFFLARKYMMDYLKKNPPINEEMLRMMMMQMGQKPSQKKINQMMTMMNKNM 75
Cdd:PRK01844  21 GFFIARKYMMNYLQKNPPINEQMLKMMMMQMGQKPSQKKINQMMSAMNKQQ 71
PRK00523 PRK00523
hypothetical protein; Provisional
 25-74 1.25e-05

hypothetical protein; Provisional


Pssm-ID: 179056  Cd Length: 72  Bit Score: 38.92  E-value: 1.25e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|
gi 1374806689 25 GFFLARKYMMDYLKKNPPINEEMLRMMMMQMGQKPSQKKINQMMTMMNKN 74
Cdd:PRK00523  22 GYFVSKKMFKKQIRENPPITENMIRAMYMQMGRKPSESQIKQVMRSVKNA 71
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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