|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
267-490 |
3.01e-19 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 87.86 E-value: 3.01e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 267 AEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEK-GEYETAISTLNDAVEQGREmRADYKVisksfaHIGNA 345
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRrGEYDRAIRIHQKLLERDPD-RAEALL------ELAQD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 346 YHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVK 417
Cdd:COG2956 86 YLKAGLLDRAEELLEKLLELDPDdaealrllAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIE 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1375789700 418 AYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 490
Cdd:COG2956 166 ALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKA 238
|
|
| STI1 |
pfam17830 |
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ... |
527-581 |
9.90e-18 |
|
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.
Pssm-ID: 436075 Cd Length: 55 Bit Score: 77.22 E-value: 9.90e-18
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 1375789700 527 PEETYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQTLIA 581
Cdd:pfam17830 1 DPELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYMQDPRVMTKLGVLMG 55
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
349-490 |
9.34e-16 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 76.49 E-value: 9.34e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 349 LGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE 428
Cdd:COG4785 26 LAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPD 105
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1375789700 429 DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 490
Cdd:COG4785 106 LAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKA 167
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
293-565 |
3.21e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 75.43 E-value: 3.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 293 KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMradykviSKSFAHIGNAYHKLGDLKKTIEYYQKSLtehrtadil 372
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD-------AEALYNLGLAYLRLGRYEEALADYEQAL--------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 373 tklrnaekELKKAEAEAYVNpekaeearlEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 452
Cdd:COG0457 70 --------ELDPDDAEALNN---------LGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEA 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 453 CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDTEVNNGSSAREIDQLYYKASQQRFQPGTSNETPEETYQ 532
Cdd:COG0457 133 YERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLA 212
|
250 260 270
....*....|....*....|....*....|...
gi 1375789700 533 RAMKDPEVAAIMQDPVMQSILQQAQQNPAALQE 565
Cdd:COG0457 213 ILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
396-490 |
4.71e-14 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 73.67 E-value: 4.71e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 396 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 475
Cdd:PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81
|
90
....*....|....*
gi 1375789700 476 AVKEYASALETLDAA 490
Cdd:PLN03088 82 KLEEYQTAKAALEKG 96
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
5-498 |
1.14e-13 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 73.86 E-value: 1.14e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 5 ADEYKQQGNAAFTAKDYDKAIELFTKAIEVSETPnhVLYSNRSACYTSLKKFSDALNDANECVKINPSWSKGYNRLGAAH 84
Cdd:TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDP--VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 85 LGLGdldeaesNYKKALeLDASNKAAKEGLdqvhRTQQARQAqpdlgltqlfadpnLIENLKKNA--KTSEMMKDPQlva 162
Cdd:TIGR00990 205 DGLG-------KYADAL-LDLTASCIIDGF----RNEQSAQA--------------VERLLKKFAesKAKEILETKP--- 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 163 kligykqnpqaigqdlftdPRL--MTIMATLMGV---DLNMDDINQSNSMPKepETSKSTEQKKDAEPQSDSTTSKENSS 237
Cdd:TIGR00990 256 -------------------ENLpsVTFVGNYLQSfrpKPRPAGLEDSNELDE--ETGNGQLQLGLKSPESKADESYEEAA 314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 238 KAPQreeskesEPMEVDEDDSKIEADKEKAEGNKFYKARQfDEAIEHYNKAWELHKDIT--YLnNRAAAEYEKGEYETAI 315
Cdd:TIGR00990 315 RAFE-------KALDLGKLGEKEAIALNLRGTFKCLKGKH-LEALADLSKSIELDPRVTqsYI-KRASMNLELGDPDKAE 385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 316 STLNDAVEQGRE------MRADYKVISKSFAHIGNAYHKLGDLKK--TIEYYQKSLTEHRT---ADILTKLRNAEKELkk 384
Cdd:TIGR00990 386 EDFDKALKLNSEdpdiyyHRAQLHFIKGEFAQAGKDYQKSIDLDPdfIFSHIQLGVTQYKEgsiASSMATFRRCKKNF-- 463
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 385 aeaeayvnPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM-------SFPEAIADCNKAI 457
Cdd:TIGR00990 464 --------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALalfqwkqDFIEAENLCEKAL 535
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 1375789700 458 EKDPNFVRAYIRKATAQIAVKEYASAL----ETLDAARTKDTEVN 498
Cdd:TIGR00990 536 IIDPECDIAVATMAQLLLQQGDVDEALklfeRAAELARTEGELVQ 580
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
5-126 |
1.49e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 70.81 E-value: 1.49e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 5 ADEYKQQGNAAFTAKDYDKAIELFTKAIEVSETpNHVLYSNRSACYTSLKKFSDALNDANECVKINPSWSKGYNRLGAAH 84
Cdd:COG0457 8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPD-DAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1375789700 85 LGLGDLDEAESNYKKALELDASNKAAKEGLDQVH----RTQQARQA 126
Cdd:COG0457 87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALlelgRYDEAIEA 132
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
5-110 |
1.51e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.49 E-value: 1.51e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 5 ADEYKQQGNAAFTAKDYDKAIELFTKAIEVSetPNHV-LYSNRSACYTSLKKFSDALNDANECVKINPSWSKGYNRLGAA 83
Cdd:COG3914 112 AEALFNLGNLLLALGRLEEALAALRRALALN--PDFAeAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNA 189
|
90 100
....*....|....*....|....*..
gi 1375789700 84 HLGLGDLDEAESNYKKALELDASNKAA 110
Cdd:COG3914 190 LQDLGRLEEAIAAYRRALELDPDNADA 216
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
261-490 |
3.74e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 72.33 E-value: 3.74e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 261 EADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKgeyETAISTLNDAVEQGREMRADYKVISKSFA 340
Cdd:COG3914 9 LAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAA---AALLALAAGEAAAAAAALLLLAALLELAA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 341 HignAYHKLGDLKKTIEYYQKSLtehrtadiltklrnaekELKKAEAEAYVNpekaeearlEGKEYFTKSDWPNAVKAYT 420
Cdd:COG3914 86 L---LLQALGRYEEALALYRRAL-----------------ALNPDNAEALFN---------LGNLLLALGRLEEALAALR 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 421 EMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 490
Cdd:COG3914 137 RALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRA 206
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
203-573 |
8.31e-13 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 71.17 E-value: 8.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 203 QSNSMPKEPETSKSTEQK-KDAEPQSDSTTS--KENSSKAPQRE------ESKESEPMEVDEDDSKIEADKEKAEGNKFY 273
Cdd:TIGR00990 59 GQQQRESKPKISKKERRKrKQAEKETEGKTEekKSTAPKNAPVEpadelpEIDESSVANLSEEERKKYAAKLKEKGNKAY 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 274 KARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVeqgrEMRADYkviSKSFAHIGNAYHKLGDlk 353
Cdd:TIGR00990 139 RNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAAL----ELDPDY---SKALNRRANAYDGLGK-- 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 354 ktieyYQKSLTEHRTADILTKLRNA------EKELKK-AEAEAY----VNPEK--------------AEEARLEGKEYFT 408
Cdd:TIGR00990 210 -----YADALLDLTASCIIDGFRNEqsaqavERLLKKfAESKAKeileTKPENlpsvtfvgnylqsfRPKPRPAGLEDSN 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 409 KSDwPNAVKAYTEMIKRAPED--ARGYSNRAAALAK-----------------------LMSFP-EAIADCNKAIEKDPN 462
Cdd:TIGR00990 285 ELD-EETGNGQLQLGLKSPESkaDESYEEAARAFEKaldlgklgekeaialnlrgtfkcLKGKHlEALADLSKSIELDPR 363
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 463 FVRAYIRKATAQIAVKEYASALETLDAARTKDTEVNNgssareidqLYYKASQQRFQPGTSNETPEEtYQRAMK-DPE-V 540
Cdd:TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPD---------IYYHRAQLHFIKGEFAQAGKD-YQKSIDlDPDfI 433
|
410 420 430
....*....|....*....|....*....|....*..
gi 1375789700 541 AAIMQDPVMQSILQQAQQNPAALQEHMKN----PEVF 573
Cdd:TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNfpeaPDVY 470
|
|
| STI1 |
pfam17830 |
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 ... |
138-193 |
9.90e-13 |
|
STI1 domain; This entry corresponds to the STI1 domain that is found in two copies in the Sti1 protein.
Pssm-ID: 436075 Cd Length: 55 Bit Score: 62.96 E-value: 9.90e-13
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 1375789700 138 DPNLIENLKKNAKTSEMMKDPQLVAKLIGYKQNPQAIGQDLfTDPRLMTIMATLMG 193
Cdd:pfam17830 1 DPELLAKLAANPETRALLSDPEFVAKLQQIQKNPSSLQQYM-QDPRVMTKLGVLMG 55
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
269-491 |
1.16e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 68.11 E-value: 1.16e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 269 GNKFYKARQFDEAIEHYNKAWELHKD-ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMradykviSKSFAHIGNAYH 347
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEKALELDPDdAEALYNLGLAYLRLGRYEEALADYEQALELDPDD-------AEALNNLGLALQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 348 KLGDLKKTIEYYQKSLtehrtadiltklrnaekELKKAEAEAYVNpekaeearlEGKEYFTKSDWPNAVKAYTEMIKRAP 427
Cdd:COG0457 88 ALGRYEEALEDYDKAL-----------------ELDPDDAEALYN---------LGLALLELGRYDEAIEAYERALELDP 141
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1375789700 428 EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 491
Cdd:COG0457 142 DDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQ 205
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
269-487 |
1.29e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 68.22 E-value: 1.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 269 GNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEK-GEYETAISTLNDAVEQGREMRadykvisKSFAHIGNAYH 347
Cdd:COG2956 49 GNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKaGLLDRAEELLEKLLELDPDDA-------EALRLLAEIYE 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 348 KLGDLKKTIEYYQKSLTE--------HRTADILTKLRN---AEKELKKAEAeayVNPEKAEEARLEGKEYFTKSDWPNAV 416
Cdd:COG2956 122 QEGDWEKAIEVLERLLKLgpenahayCELAELYLEQGDydeAIEALEKALK---LDPDCARALLLLAELYLEQGDYEEAI 198
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1375789700 417 KAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNfVRAYIRKATAQIAVKEYASALETL 487
Cdd:COG2956 199 AALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLEAALALL 268
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
5-121 |
1.82e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 67.34 E-value: 1.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 5 ADEYKQQGNAAFTAKDYDKAIELFTKAIEVSetPNHV-LYSNRSACYTSLKKFSDALNDANECVKINPSWSKGYNRLGAA 83
Cdd:COG0457 42 AEALYNLGLAYLRLGRYEEALADYEQALELD--PDDAeALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLA 119
|
90 100 110
....*....|....*....|....*....|....*...
gi 1375789700 84 HLGLGDLDEAESNYKKALELDASNKAAKEGLDQVHRTQ 121
Cdd:COG0457 120 LLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
5-151 |
3.02e-12 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 66.48 E-value: 3.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 5 ADEYKQQGNAAFTAKDYDKAIELFTKAIEVSetPNHV-LYSNRSACYTSLKKFSDALNDANECVKINPSWSKGYNRLGAA 83
Cdd:COG4785 73 AQLYYERGVAYDSLGDYDLAIADFDQALELD--PDLAeAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIA 150
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1375789700 84 HLGLGDLDEAESNYKKALELDASNKAAkeGLDQVHRTQQARQAQPDLGLTQLFADPNLIENLKKNAKT 151
Cdd:COG4785 151 LYYLGRYELAIADLEKALELDPNDPER--ALWLYLAERKLDPEKALALLLEDWATAYLLQGDTEEARE 216
|
|
| PLN03088 |
PLN03088 |
SGT1, suppressor of G2 allele of SKP1; Provisional |
5-106 |
1.93e-11 |
|
SGT1, suppressor of G2 allele of SKP1; Provisional
Pssm-ID: 215568 [Multi-domain] Cd Length: 356 Bit Score: 65.96 E-value: 1.93e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 5 ADEYKQQGNAAFTAKDYDKAIELFTKAIEVSetPNHV-LYSNRSACYTSLKKFSDALNDANECVKINPSWSKGYNRLGAA 83
Cdd:PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLD--PNNAeLYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTA 79
|
90 100
....*....|....*....|...
gi 1375789700 84 HLGLGDLDEAesnyKKALELDAS 106
Cdd:PLN03088 80 CMKLEEYQTA----KAALEKGAS 98
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
275-467 |
2.39e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 66.56 E-value: 2.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 275 ARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQgremRADYkviSKSFAHIGNAYHKLGDLKK 354
Cdd:COG3914 58 ALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALAL----NPDN---AEALFNLGNLLLALGRLEE 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 355 TIEYYQKSLtehrtadiltklrnaekELKKAEAEAYVNpekaeearlEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS 434
Cdd:COG3914 131 ALAALRRAL-----------------ALNPDFAEAYLN---------LGEALRRLGRLEEAIAALRRALELDPDNAEALN 184
|
170 180 190
....*....|....*....|....*....|...
gi 1375789700 435 NRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY 467
Cdd:COG3914 185 NLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
|
|
| STI1 |
smart00727 |
Heat shock chaperonin-binding motif; |
537-576 |
8.87e-11 |
|
Heat shock chaperonin-binding motif;
Pssm-ID: 128966 Cd Length: 41 Bit Score: 56.89 E-value: 8.87e-11
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1375789700 537 DPEVAAIMQDPVMQSILQQAQQNPAALQEHMK-NPEVFKKI 576
Cdd:smart00727 1 DPEMALRLQNPQVQSLLQDMQQNPDMLAQMLQeNPQLLQLI 41
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
5-490 |
1.09e-10 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 64.72 E-value: 1.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 5 ADEYKQQGNAAFTAKDYDKAIELFTKAIEVSETPNHVLYSNRSAcYTSLKKFSDALNDANECVKINPSWSKGYNRLGAAH 84
Cdd:TIGR02917 397 AAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILS-YLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIY 475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 85 LGLGDLDEAESNYKKALELDASNKAAKEGLDQVHRTQQARQAQPDLGLTQLFADPNLIENLKKNAKTSEMMKDPQLVAKL 164
Cdd:TIGR02917 476 LGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAW 555
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 165 IG--YKQNPQAI------GQDLFTDPRLMTIMATLmgvdlnmDDINQSNSMPKEPETSKSTEQKKdaepQSDSTTSKENS 236
Cdd:TIGR02917 556 LEkaAELNPQEIepalalAQYYLGKGQLKKALAIL-------NEAADAAPDSPEAWLMLGRAQLA----AGDLNKAVSSF 624
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 237 SKApqreeskesepmeVDEDDSKIEADKEKAEGNKFykARQFDEAIEHYNKAWELHKDITylnnraAAEYEKGEYETAIS 316
Cdd:TIGR02917 625 KKL-------------LALQPDSALALLLLADAYAV--MKNYAKAITSLKRALELKPDNT------EAQIGLAQLLLAAK 683
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 317 TLNDAVEQGREMRADYKVISKSFAHIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKL-------RNAEKELKKAEAEA 389
Cdd:TIGR02917 684 RTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLhrallasGNTAEAVKTLEAWL 763
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 390 YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLmSFPEAIADCNKAIE---KDPNFVRA 466
Cdd:TIGR02917 764 KTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLEL-KDPRALEYAERALKlapNIPAILDT 842
|
490 500
....*....|....*....|....
gi 1375789700 467 YirkATAQIAVKEYASALETLDAA 490
Cdd:TIGR02917 843 L---GWLLVEKGEADRALPLLRKA 863
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
380-490 |
1.49e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 59.25 E-value: 1.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 380 KELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 459
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|.
gi 1375789700 460 DPNFVRAYIRKATAQIAVKEYASALETLDAA 490
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
5-110 |
2.03e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 63.47 E-value: 2.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 5 ADEYKQQGNAAFTAKDYDKAIELFTKAIEVSetPNHVL-YSNRSACYTSLKKFSDALNDANECVKINPSWSKGYNRLGAA 83
Cdd:COG3914 78 AALLELAALLLQALGRYEEALALYRRALALN--PDNAEaLFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEA 155
|
90 100
....*....|....*....|....*..
gi 1375789700 84 HLGLGDLDEAESNYKKALELDASNKAA 110
Cdd:COG3914 156 LRRLGRLEEAIAALRRALELDPDNAEA 182
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
12-122 |
3.22e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 61.28 E-value: 3.22e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 12 GNAAFTAKDYDKAIELFTKAIEVSETPNHVLYsNRSACYTSLKKFSDALNDANECVKINPSWSKGYNRLGAAHLGLGDLD 91
Cdd:COG2956 83 AQDYLKAGLLDRAEELLEKLLELDPDDAEALR-LLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYD 161
|
90 100 110
....*....|....*....|....*....|.
gi 1375789700 92 EAESNYKKALELDASNKAAKEGLDQVHRTQQ 122
Cdd:COG2956 162 EAIEALEKALKLDPDCARALLLLAELYLEQG 192
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
392-490 |
6.31e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 60.02 E-value: 6.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 392 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 471
Cdd:COG0457 4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83
|
90
....*....|....*....
gi 1375789700 472 TAQIAVKEYASALETLDAA 490
Cdd:COG0457 84 LALQALGRYEEALEDYDKA 102
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
8-149 |
1.05e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 59.25 E-value: 1.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 8 YKQQGNAAFTAKDYDKAIELFTKAIEVSETpNHVLYSNRSACYTSLKKFSDALNDANECVKINPSWSKGYNRLGAAHLGL 87
Cdd:COG0457 79 LNNLGLALQALGRYEEALEDYDKALELDPD-DAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1375789700 88 GDLDEAESNYKKALELDASNKAAKEGLDQVHRTQQARQAQPDLGLTQLFADPNLIENLKKNA 149
Cdd:COG0457 158 GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAAL 219
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
5-130 |
1.89e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 58.97 E-value: 1.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 5 ADEYKQQGNAAFTAKDYDKAIELFTKAIEVSetPNHV-LYSNRSACYTSLKKFSDALNDANECVKINPSWSKGYNRLGAA 83
Cdd:COG2956 144 AHAYCELAELYLEQGDYDEAIEALEKALKLD--PDCArALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAEL 221
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1375789700 84 HLGLGDLDEAESNYKKALELDASNKAAKEGLDQVHRTQQARQAQPDL 130
Cdd:COG2956 222 YEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALL 268
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
8-107 |
5.59e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.81 E-value: 5.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 8 YKQQGNAAFTAKDYDKAIELFTKAIEVSetPNHV-LYSNRSACYTSLKKFSDALNDANECVKINPSWSKGYNRLGAAHLG 86
Cdd:COG4783 41 FALLGEILLQLGDLDEAIVLLHEALELD--PDEPeARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRA 118
|
90 100
....*....|....*....|.
gi 1375789700 87 LGDLDEAESNYKKALELDASN 107
Cdd:COG4783 119 LGRPDEAIAALEKALELDPDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
5-119 |
6.34e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.81 E-value: 6.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 5 ADEYKQQGNAAFTAKDYDKAIELFTKAIEVSETpNHVLYSNRSACYTSLKKFSDALNDANECVKINPSWSKGYNRLGAAH 84
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPD-NPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110
....*....|....*....|....*....|....*
gi 1375789700 85 LGLGDLDEAESNYKKALELDASNKAAKEGLDQVHR 119
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYR 117
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
374-496 |
8.80e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 54.43 E-value: 8.80e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 374 KLRNAEKELKKAEAEayvNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 453
Cdd:COG4783 19 DYDEAEALLEKALEL---DPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALL 95
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1375789700 454 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDTE 496
Cdd:COG4783 96 EKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
5-104 |
2.58e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.43 E-value: 2.58e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 5 ADEYKQQGNAAFTAKDYDKAIELFTKAIEVSETpNHVLYSNRSACYTSLKKFSDALNDANECVKINPSWSKGYNRLGAAH 84
Cdd:COG5010 54 FAIESPSDNLYNKLGDFEESLALLEQALQLDPN-NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALL 132
|
90 100
....*....|....*....|
gi 1375789700 85 LGLGDLDEAESNYKKALELD 104
Cdd:COG5010 133 LSLGQDDEAKAALQRALGTS 152
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
39-110 |
3.31e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 54.63 E-value: 3.31e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1375789700 39 NHVLYSNRSACYTSLKKFSDALNDANECVKINPSWSKGYNRLGAAHLGLGDLDEAESNYKKALELDASNKAA 110
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA 78
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
14-106 |
3.70e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 51.32 E-value: 3.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 14 AAFTAKDYDKAIELFTKAIEVSetPNHV-LYSNRSACYTSLKKFSDALnDANECVKINPSWSKGYNRLGAAHLGLGDLDE 92
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELD--PDNAdALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDE 77
|
90
....*....|....
gi 1375789700 93 AESNYKKALELDAS 106
Cdd:COG3063 78 ALAYLERALELDPS 91
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
343-565 |
5.91e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 54.35 E-value: 5.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 343 GNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRN---AEKELKKAEA---EAYVNPEKAEEARLE-GKEYFTKSDWPN 414
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLEEALELDpETVEAHLALGNlyrRRGEYDRAIRihqKLLERDPDRAEALLElAQDYLKAGLLDR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 415 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 494
Cdd:COG2956 95 AEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1375789700 495 teVNNGSSAREIDQLYYKASQQrfqpgtsnETPEETYQRAMK-DPEVAAIMqdPVMQSILQQAQQNPAALQE 565
Cdd:COG2956 175 --PDCARALLLLAELYLEQGDY--------EEAIAALERALEqDPDYLPAL--PRLAELYEKLGDPEEALEL 234
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
394-515 |
1.16e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 50.96 E-value: 1.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 394 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 473
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLA 81
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1375789700 474 QIAVKEYASALETLDAARTKDTEvnNGSSAREIDQLYYKASQ 515
Cdd:COG4783 82 LLKAGDYDEALALLEKALKLDPE--HPEAYLRLARAYRALGR 121
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
406-494 |
1.22e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 49.78 E-value: 1.22e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 406 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAdCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 485
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
....*....
gi 1375789700 486 TLDAARTKD 494
Cdd:COG3063 81 YLERALELD 89
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
344-494 |
1.42e-07 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 51.11 E-value: 1.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 344 NAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMI 423
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1375789700 424 KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 494
Cdd:COG5010 82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
300-509 |
2.80e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 51.84 E-value: 2.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 300 NRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAHiGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRN-- 377
Cdd:COG4785 2 YALALALLLALALAAAAASKAAILLAALLFAAVLALAIALAD-LALALAAAALAAAALAAERIDRALALPDLAQLYYErg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 378 -----------AEKELKKAEAEayvNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSF 446
Cdd:COG4785 81 vaydslgdydlAIADFDQALEL---DPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRY 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1375789700 447 PEAIADCNKAIEKDPNFVRAYIRKATAQiAVKEYASALETLDAARTKDTEV-NNGSSAREIDQL 509
Cdd:COG4785 158 ELAIADLEKALELDPNDPERALWLYLAE-RKLDPEKALALLLEDWATAYLLqGDTEEARELFKL 220
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
10-114 |
4.36e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 51.65 E-value: 4.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 10 QQGNAAFTAKDYDKAIELFTKAIEVSetPNHV-LYSNRSACYTSLKKFSDALNDANECVKINPSWSKGYNRLGAAHLGLG 88
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELD--PETVeAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90
|
90 100
....*....|....*....|....*.
gi 1375789700 89 DLDEAESNYKKALELDASNKAAKEGL 114
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLL 116
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
297-463 |
5.27e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 49.03 E-value: 5.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 297 YLNNRAAAEYEKGEYETAISTLNDAVEQGREMradykviSKSFAHIGNAYHKLGDLKKTIEYYQKSLtehrtadiltklr 376
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDN-------PEAFALLGEILLQLGDLDEAIVLLHEAL------------- 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 377 naekELKKAEAEAYVNpekaeearlEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKA 456
Cdd:COG4783 66 ----ELDPDEPEARLN---------LGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKA 132
|
....*..
gi 1375789700 457 IEKDPNF 463
Cdd:COG4783 133 LELDPDD 139
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
3-484 |
1.11e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 51.62 E-value: 1.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 3 LTADEYKQQGNAAFTAKDYDKAIELFTKAIEVsetpnhVLYSNRSacYTSLKKFSDALNDANECVKI-NPSWSKGYNRLG 81
Cdd:TIGR02917 61 LLGKIYLALGDYAAAEKELRKALSLGYPKNQV------LPLLARA--YLLQGKFQQVLDELPGKTLLdDEGAAELLALRG 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 82 AAHLGLGDLDEAESNYKKALELDASNKAAKEGLDQVHRTQ-QARQAQPDLGlTQLFADPNLIENLKKNAKTSEMMKDPQL 160
Cdd:TIGR02917 133 LAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAEnRFDEARALID-EVLTADPGNVDALLLKGDLLLSLGNIEL 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 161 VAkligykqnpQAIGQDLFTDPRlmtimatlmgvdLNMDDINQSNSmpkepetskSTEQKKDAEPQSDSTTSKEnssKAP 240
Cdd:TIGR02917 212 AL---------AAYRKAIALRPN------------NIAVLLALATI---------LIEAGEFEEAEKHADALLK---KAP 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 241 QREESKESEPMeVDEDDSKIEADKEKAE-----GNKFYKARQFDEAIEHYNKAWE------------LHKDITYLNNRAA 303
Cdd:TIGR02917 259 NSPLAHYLKAL-VDFQKKNYEDARETLQdalksAPEYLPALLLAGASEYQLGNLEqayqylnqilkyAPNSHQARRLLAS 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 304 AEYEKGEYETAISTLNDAVEQGremradyKVISKSFAHIGNAYHKLGDLKKTIEYYQKS------LTEHRTADILTKL-- 375
Cdd:TIGR02917 338 IQLRLGRVDEAIATLSPALGLD-------PDDPAALSLLGEAYLALGDFEKAAEYLAKAteldpeNAAARTQLGISKLsq 410
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 376 ---RNAEKELKKAeaeAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 452
Cdd:TIGR02917 411 gdpSEAIADLETA---AQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREA 487
|
490 500 510
....*....|....*....|....*....|....*....
gi 1375789700 453 CNKAIEKDPNFVRAYIRKAT-------AQIAVKEYASAL 484
Cdd:TIGR02917 488 FEKALSIEPDFFPAAANLARidiqegnPDDAIQRFEKVL 526
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
8-135 |
2.74e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 49.34 E-value: 2.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 8 YKQQGNAAFTAKDYDKAIELFTKAIEVSETPNHVLYsNRSACYTSLKKFSDALNDANECVKINPSWSKGYNRLGAAHLGL 87
Cdd:COG2956 113 LRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYC-ELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQ 191
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1375789700 88 GDLDEAESNYKKALELDASNKAAKEGLDQVHRtqqaRQAQPDLGLTQL 135
Cdd:COG2956 192 GDYEEAIAALERALEQDPDYLPALPRLAELYE----KLGDPEEALELL 235
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
423-490 |
3.58e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 48.46 E-value: 3.58e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1375789700 423 IKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 490
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQA 68
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
415-494 |
4.21e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.54 E-value: 4.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 415 AVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 494
Cdd:COG4235 2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
5-122 |
4.91e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.88 E-value: 4.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 5 ADEYKQQGNAAFTAKDYDKAIELFTKAIEVSETPNHVLYSNRSACYTSLKKFSDALNDANECVKINPSWSKGYNRLGAAH 84
Cdd:COG5010 19 KLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLY 98
|
90 100 110
....*....|....*....|....*....|....*...
gi 1375789700 85 LGLGDLDEAESNYKKALELDASNKAAKEGLDQVHRTQQ 122
Cdd:COG5010 99 SRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG 136
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
49-130 |
7.05e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.78 E-value: 7.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 49 CYTSLKKFSDALNDANECVKINPSWSKGYNRLGAAHLGLGDLDEAESnYKKALELDASNKAAKEGLDQVH-RTQQARQAQ 127
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLlELGDYDEAL 79
|
...
gi 1375789700 128 PDL 130
Cdd:COG3063 80 AYL 82
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
272-363 |
1.58e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.80 E-value: 1.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 272 FYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYkvisksfAHIGNAYHKLG 350
Cdd:COG4783 48 LLQLGDLDEAIVLLHEALELDpDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAY-------LRLARAYRALG 120
|
90
....*....|...
gi 1375789700 351 DLKKTIEYYQKSL 363
Cdd:COG4783 121 RPDEAIAALEKAL 133
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
5-102 |
2.83e-05 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 45.68 E-value: 2.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 5 ADEYKQQGNAAFTAKDYDKAIELFTKAIEVSetPNHVL-YSNRSACYTSLKKFSDALNDANECVKINPS------W---- 73
Cdd:COG4785 107 AEAYNNRGLAYLLLGDYDAALEDFDRALELD--PDYAYaYLNRGIALYYLGRYELAIADLEKALELDPNdperalWlyla 184
|
90 100 110
....*....|....*....|....*....|....*....
gi 1375789700 74 ------SKGYNRL----GAAHLGLGDLDEAESNYKKALE 102
Cdd:COG4785 185 erkldpEKALALLledwATAYLLQGDTEEARELFKLALA 223
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
272-369 |
2.87e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 42.85 E-value: 2.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 272 FYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAIstlndAVEQGREMRADYkviSKSFAHIGNAYHKLG 350
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDpDNADALNNLGLLLLEQGRYDEAI-----ALEKALKLDPNN---AEALLNLAELLLELG 73
|
90
....*....|....*....
gi 1375789700 351 DLKKTIEYYQKSLTEHRTA 369
Cdd:COG3063 74 DYDEALAYLERALELDPSA 92
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
309-496 |
3.85e-05 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 46.62 E-value: 3.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 309 GEYETAISTLNDAVEQGREMRADYKvisksfAHIGNAYHKLGDLKKTIEYYQKSLT-EHRTADILTKL-RNAEKELKKAE 386
Cdd:TIGR02917 104 GKFQQVLDELPGKTLLDDEGAAELL------ALRGLAYLGLGQLELAQKSYEQALAiDPRSLYAKLGLaQLALAENRFDE 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 387 AEAYV------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 460
Cdd:TIGR02917 178 ARALIdevltaDPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKA 257
|
170 180 190
....*....|....*....|....*....|....*.
gi 1375789700 461 PNFVRAYIRKATAQIAVKEYASALETLDAARTKDTE 496
Cdd:TIGR02917 258 PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE 293
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
12-110 |
4.09e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.46 E-value: 4.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 12 GNAAFTAKDYDKAIELFTKAIEVSETpNHVLYSNRSACYTSLKKFSDALNDANECVKINPSWSKGYNRLGAAHLGLGDLD 91
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPD-NADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYA 102
|
90
....*....|....*....
gi 1375789700 92 EAESNYKKALELDASNKAA 110
Cdd:COG4235 103 EAIAAWQKLLALLPADAPA 121
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
53-122 |
6.10e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 46.14 E-value: 6.10e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 53 LKKFSDALNDANECVKINPSWSKGYNRLGAAHLGLGDLDEAESNYKKALELDASNKAAKEGLDQVHRTQQ 122
Cdd:COG3914 91 LGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLG 160
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
14-112 |
6.53e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 42.67 E-value: 6.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 14 AAFTAKDYDKAIELFTKAIEvsETPNHVLYSN----RSACYTSLKKFSDALNDANECVKINPSWSK---GYNRLGAAHLG 86
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLK--RYPNSPLAPDalywLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLE 79
|
90 100
....*....|....*....|....*.
gi 1375789700 87 LGDLDEAESNYKKALELDASNKAAKE 112
Cdd:COG1729 80 LGDYDKARATLEELIKKYPDSEAAKE 105
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
430-463 |
6.85e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 40.10 E-value: 6.85e-05
10 20 30
....*....|....*....|....*....|....
gi 1375789700 430 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 463
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
74-107 |
8.09e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 39.71 E-value: 8.09e-05
10 20 30
....*....|....*....|....*....|....
gi 1375789700 74 SKGYNRLGAAHLGLGDLDEAESNYKKALELDASN 107
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
272-366 |
8.94e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.03 E-value: 8.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 272 FYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMradykviSKSFAHIGNAYHKLG 350
Cdd:COG5010 64 YNKLGDFEESLALLEQALQLDpNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDN-------PNAYSNLAALLLSLG 136
|
90
....*....|....*.
gi 1375789700 351 DLKKTIEYYQKSLTEH 366
Cdd:COG5010 137 QDDEAKAALQRALGTS 152
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
269-363 |
1.66e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 43.37 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 269 GNKFYKARQFDEAIEHYNKAWELHKDITY-LNNRAAAEYEKGEYETAISTLNDAVE------------QGREMRADY-KV 334
Cdd:COG4785 114 GLAYLLLGDYDAALEDFDRALELDPDYAYaYLNRGIALYYLGRYELAIADLEKALEldpndperalwlYLAERKLDPeKA 193
|
90 100
....*....|....*....|....*....
gi 1375789700 335 ISKSFAHIGNAYHKLGDLKKTIEYYQKSL 363
Cdd:COG4785 194 LALLLEDWATAYLLQGDTEEARELFKLAL 222
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
74-107 |
1.71e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.97 E-value: 1.71e-04
10 20 30
....*....|....*....|....*....|....
gi 1375789700 74 SKGYNRLGAAHLGLGDLDEAESNYKKALELDASN 107
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
262-390 |
2.16e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 41.72 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 262 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVE-QGREMRADYKvisksf 339
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDpDNPEAFALLGEILLQLGDLDEAIVLLHEALElDPDEPEARLN------ 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1375789700 340 ahIGNAYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKEL-KKAEAEAY 390
Cdd:COG4783 78 --LGLALLKAGDYDEALALLEKALKLDpEHPEAYLRLARAYRALgRPDEAIAA 128
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
271-366 |
3.26e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.36 E-value: 3.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 271 KFYKARQFDEAIEHYNKAWELHKDITY----LNNRAAAEYEKGEYETAISTLNDAVEQgremRADYKVISKSFAHIGNAY 346
Cdd:COG1729 2 ALLKAGDYDEAIAAFKAFLKRYPNSPLapdaLYWLGEAYYALGDYDEAAEAFEKLLKR----YPDSPKAPDALLKLGLSY 77
|
90 100
....*....|....*....|
gi 1375789700 347 HKLGDLKKTIEYYQKSLTEH 366
Cdd:COG1729 78 LELGDYDKARATLEELIKKY 97
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
269-363 |
3.66e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 40.76 E-value: 3.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 269 GNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVE-QGREMRADYkvisksfaHIGNAY 346
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDpDNADALLDLAEALLAAGDTEEAEELLERALAlDPDNPEALY--------LLGLAA 95
|
90
....*....|....*..
gi 1375789700 347 HKLGDLKKTIEYYQKSL 363
Cdd:COG4235 96 FQQGDYAEAIAAWQKLL 112
|
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
10-114 |
4.89e-04 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 41.76 E-value: 4.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 10 QQGNAAFTAKDYDKAIELFTKAIEVSETPN--HVLYSNRSACYTSLKKFSDALNDANEcvKINPSWSKGYNRL-GAAHLG 86
Cdd:COG2976 95 LLAKAAVDAGDLDKAAAQLQWVLDNAKDPAlkALARLRLARVLLAQKKYDEALATLDA--VKPEAFAALYAELrGDILLA 172
|
90 100
....*....|....*....|....*...
gi 1375789700 87 LGDLDEAESNYKKALELDASNKAAKEGL 114
Cdd:COG2976 173 QGDKAEARAAYQKALAALPEDAPLRQLL 200
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
199-442 |
4.92e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 4.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 199 DDINQSNSMPKEPETSKSTEQKKDAEPQSDSTTSKENSSKAPQREESKESE-PMEVDEDDSKIEADKEKAEGNKfyKARQ 277
Cdd:PTZ00121 1345 AEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEaKKKAEEDKKKADELKKAAAAKK--KADE 1422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 278 FDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAHigNAYHKLGDLKKTIE 357
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD--EAKKKAEEAKKKAD 1500
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 358 YYQKSLTEHRTADILTKLRNAEK--ELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSN 435
Cdd:PTZ00121 1501 EAKKAAEAKKKADEAKKAEEAKKadEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAL 1580
|
....*..
gi 1375789700 436 RAAALAK 442
Cdd:PTZ00121 1581 RKAEEAK 1587
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
298-363 |
5.97e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 38.91 E-value: 5.97e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1375789700 298 LNNRAAAEYEKGEYETAISTLNDAVEQGRE-MRADYKVISKSFAHIGNAYHKLGDLKKTIEYYQKSL 363
Cdd:pfam13424 6 LNNLAAVLRRLGRYDEALELLEKALEIARRlLGPDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
277-361 |
6.91e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 41.79 E-value: 6.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 277 QFDEAIEHYNKAWE-LHKDITYLNNRAA-AEYEKGEYETAISTLNDAVEQgremRADYKvisKSFAHI--GNAYHKLGDL 352
Cdd:COG4700 104 RYDEAIELYEEALTgIFADDPHILLGLAqALFELGRYAEALETLEKLIAK----NPDFK---SSDAHLlyARALEALGDL 176
|
....*....
gi 1375789700 353 KKTIEYYQK 361
Cdd:COG4700 177 EAAEAELEA 185
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
430-463 |
7.47e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.04 E-value: 7.47e-04
10 20 30
....*....|....*....|....*....|....
gi 1375789700 430 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 463
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
58-126 |
1.36e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 39.22 E-value: 1.36e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1375789700 58 DALNDANECVKINPSWSKGYNRLGAAHLGLGDLDEAESNYKKALELDASNKAAKEGLDQV----HRTQQARQA 126
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAllaaGDTEEAEEL 73
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
283-461 |
1.92e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 39.17 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 283 EHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAHIGNAYHKLGDLKKTIEYYQKS 362
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 363 LtehrtadiltklrnaekELKKAEAEAYVNpekaeearlEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK 442
Cdd:COG5010 81 L-----------------QLDPNNPELYYN---------LALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLS 134
|
170
....*....|....*....
gi 1375789700 443 LMSFPEAIADCNKAIEKDP 461
Cdd:COG5010 135 LGQDDEAKAALQRALGTSP 153
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
75-104 |
2.47e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 35.58 E-value: 2.47e-03
10 20 30
....*....|....*....|....*....|
gi 1375789700 75 KGYNRLGAAHLGLGDLDEAESNYKKALELD 104
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELD 31
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
23-126 |
3.62e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.06 E-value: 3.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 23 KAIELFTKAIEvsETPNHV-LYSNRSACYTSLKKFSDALNDANECVKINPSWSKGYNRLGAAHLGLGDLDEAESNYKKAL 101
Cdd:COG4235 1 EAIARLRQALA--ANPNDAeGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERAL 78
|
90 100
....*....|....*....|....*....
gi 1375789700 102 ELDASNKAAKEGL----DQVHRTQQARQA 126
Cdd:COG4235 79 ALDPDNPEALYLLglaaFQQGDYAEAIAA 107
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
5-37 |
4.84e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 34.70 E-value: 4.84e-03
10 20 30
....*....|....*....|....*....|...
gi 1375789700 5 ADEYKQQGNAAFTAKDYDKAIELFTKAIEVSET 37
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
401-494 |
4.93e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 39.33 E-value: 4.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 401 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEY 480
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLL 92
|
90
....*....|....
gi 1375789700 481 ASALETLDAARTKD 494
Cdd:COG2956 93 DRAEELLEKLLELD 106
|
|
| PRK10370 |
PRK10370 |
formate-dependent nitrite reductase complex subunit NrfG; Provisional |
367-485 |
5.28e-03 |
|
formate-dependent nitrite reductase complex subunit NrfG; Provisional
Pssm-ID: 182415 [Multi-domain] Cd Length: 198 Bit Score: 38.34 E-value: 5.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 367 RTADIL---TKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSnraaALAKL 443
Cdd:PRK10370 41 RLADPLhqfASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYA----ALATV 116
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 1375789700 444 MSF-------PEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 485
Cdd:PRK10370 117 LYYqagqhmtPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE 165
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
12-102 |
5.76e-03 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 38.71 E-value: 5.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 12 GNAAFTAKDYDKAIELFTKAIEvSETPN--HVLYSnRSACYTSLKKFSDALNDANECVKINPSwskgyNRLGAAHL---- 85
Cdd:COG4700 96 ADALLELGRYDEAIELYEEALT-GIFADdpHILLG-LAQALFELGRYAEALETLEKLIAKNPD-----FKSSDAHLlyar 168
|
90 100
....*....|....*....|
gi 1375789700 86 ---GLGDLDEAESNYKKALE 102
Cdd:COG4700 169 aleALGDLEAAEAELEALAR 188
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
5-37 |
6.38e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 34.73 E-value: 6.38e-03
10 20 30
....*....|....*....|....*....|...
gi 1375789700 5 ADEYKQQGNAAFTAKDYDKAIELFTKAIEVSET 37
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| SNAP |
pfam14938 |
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are ... |
256-361 |
7.14e-03 |
|
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are involved in vesicular transport between the endoplasmic reticulum and Golgi apparatus. They act as adaptors between SNARE (integral membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive factor). They are structurally similar to TPR repeats.
Pssm-ID: 405606 [Multi-domain] Cd Length: 273 Bit Score: 38.70 E-value: 7.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 256 DDSKIE--ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDI--------TYLNnrAAAEYEKGEYETAISTLNDAVE-- 323
Cdd:pfam14938 19 KSSKYEeaADLYIQAANAYKLAKNWEEAGEAFEKAAECQLKLgskdeaanAYVE--AAKCYKKVDPEEAVRALEKAIEiy 96
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1375789700 324 --QGR-EMRADYKVisksfaHIGNAYHK-LGDLKKTIEYYQK 361
Cdd:pfam14938 97 teMGRfRRAAKHKK------EIAELYEQeLGDLEKAIEAYEQ 132
|
|
| PLN03112 |
PLN03112 |
cytochrome P450 family protein; Provisional |
527-577 |
7.22e-03 |
|
cytochrome P450 family protein; Provisional
Pssm-ID: 215583 [Multi-domain] Cd Length: 514 Bit Score: 39.04 E-value: 7.22e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 1375789700 527 PEETYQRAMKDPEVAAIMQDPVMQSILQQAQQNPAALQEHMKNPEVFKKIQ 577
Cdd:PLN03112 284 PGENGKEHMDDVEIKALMQDMIAAATDTSAVTNEWAMAEVIKNPRVLRKIQ 334
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
410-496 |
7.47e-03 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 39.02 E-value: 7.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1375789700 410 SDWPNAVKAYTEMIKRAPEDargYSNRAA---------ALAKlMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEY 480
Cdd:PRK11788 155 KDWQKAIDVAERLEKLGGDS---LRVEIAhfycelaqqALAR-GDLDAARALLKKALAADPQCVRASILLGDLALAQGDY 230
|
90
....*....|....*.
gi 1375789700 481 ASALETLDAARTKDTE 496
Cdd:PRK11788 231 AAAIEALERVEEQDPE 246
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
336-364 |
8.17e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 34.34 E-value: 8.17e-03
10 20
....*....|....*....|....*....
gi 1375789700 336 SKSFAHIGNAYHKLGDLKKTIEYYQKSLT 364
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALE 29
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
336-363 |
8.23e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 34.32 E-value: 8.23e-03
10 20
....*....|....*....|....*...
gi 1375789700 336 SKSFAHIGNAYHKLGDLKKTIEYYQKSL 363
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKAL 28
|
|
| |
