NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1376772071|gb|PTP66394|]
View 

ATPase [Vibrio splendidus]

Protein Classification

COG3911 family protein( domain architecture ID 10008129)

COG3911 family protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
COG3911 COG3911
Predicted ATPase [General function prediction only];
1-173 3.03e-68

Predicted ATPase [General function prediction only];


:

Pssm-ID: 443117  Cd Length: 180  Bit Score: 205.44  E-value: 3.03e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376772071   1 MQP--IIITGGPGAGKTTLINALGDMGYPTLAESSRQLIEQQSQLENGILPWFDLPGFARLCLTVMNEQKEQA-NQHPVA 77
Cdd:COG3911     1 MMTrrIVITGGPGSGKTTLLNALARRGYACVPEAGREIIREQQAIGGDALPWTDPAAFAELMLEGRLRQYREAeALSGPV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376772071  78 FLDRAIPDICGYLTQANLKIDEVYREASQG--YHSQALFCRPEASIYVQDDVRPYPFEEALEIHHALVRVYQELGYEVVE 155
Cdd:COG3911    81 FFDRGIPDVLAYLRLLGLPVPEHLETAAAAfrYDRTVFILPPWPEIYTQDAERKQSFEEALRTYEALVETYRALGYELIE 160

                         170
                  ....*....|....*...
gi 1376772071 156 VPFMSVEERALFVKSHLG 173
Cdd:COG3911   161 VPKGSVEERVDFILSRLG 178
 
Name Accession Description Interval E-value
COG3911 COG3911
Predicted ATPase [General function prediction only];
1-173 3.03e-68

Predicted ATPase [General function prediction only];


Pssm-ID: 443117  Cd Length: 180  Bit Score: 205.44  E-value: 3.03e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376772071   1 MQP--IIITGGPGAGKTTLINALGDMGYPTLAESSRQLIEQQSQLENGILPWFDLPGFARLCLTVMNEQKEQA-NQHPVA 77
Cdd:COG3911     1 MMTrrIVITGGPGSGKTTLLNALARRGYACVPEAGREIIREQQAIGGDALPWTDPAAFAELMLEGRLRQYREAeALSGPV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376772071  78 FLDRAIPDICGYLTQANLKIDEVYREASQG--YHSQALFCRPEASIYVQDDVRPYPFEEALEIHHALVRVYQELGYEVVE 155
Cdd:COG3911    81 FFDRGIPDVLAYLRLLGLPVPEHLETAAAAfrYDRTVFILPPWPEIYTQDAERKQSFEEALRTYEALVETYRALGYELIE 160

                         170
                  ....*....|....*...
gi 1376772071 156 VPFMSVEERALFVKSHLG 173
Cdd:COG3911   161 VPKGSVEERVDFILSRLG 178
AAA_28 pfam13521
AAA domain;
4-164 3.27e-36

AAA domain;


Pssm-ID: 433278 [Multi-domain]  Cd Length: 164  Bit Score: 123.53  E-value: 3.27e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376772071   4 IIITGGPGAGKTTLINALGDM-GYPTLAESSRQLIEQQSQLENGILPW-FDLPGFARLCLTVMNEQKEQANQHPVAFLDR 81
Cdd:pfam13521   2 IVITGGPSTGKTTLAEALAARfGYPVVPEAAREILEELGADGGDALPWvEDLLAFARGVLEAQLEDEAAAAANDLLFFDR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376772071  82 AIPDICGYLTQANLKIDEVYREA--SQGYHsQALFCRPEASIyVQDDVRPYPFEEALEIHHALVRVYQELGYEVVEVPFM 159
Cdd:pfam13521  82 GPLDTLAYSRAYGGPCPPELEAAarASRYD-LVFLLPPDPEI-VQDGERREDPEERERFHERLREALRELGIPVIIVPRG 159


                  ....*
gi 1376772071 160 SVEER 164
Cdd:pfam13521 160 SVEER 164
PRK05416 PRK05416
RNase adapter RapZ;
1-105 4.65e-06

RNase adapter RapZ;


Pssm-ID: 235450  Cd Length: 288  Bit Score: 45.47  E-value: 4.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376772071   1 MQPIIITGGPGAGKTTLINALGDMGY-------PTLaessrqlieqqsqlengilpwfdLPGFARLCltvmneqKEQANQ 73
Cdd:PRK05416    6 MRLVIVTGLSGAGKSVALRALEDLGYycvdnlpPSL-----------------------LPKLVELL-------AQSGGI 55

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1376772071  74 HPVA---------FLDRaIPDICGYLTQANLKIDEVYREAS 105
Cdd:PRK05416   56 RKVAvvidvrsrpFFDD-LPEALDELRERGIDVRVLFLDAS 95
VirB11-like_ATPase cd01130
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ...
 4-21 2.73e-04

Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.


Pssm-ID: 410874 [Multi-domain]  Cd Length: 177  Bit Score: 39.45  E-value: 2.73e-04
                          10
                  ....*....|....*...
gi 1376772071   4 IIITGGPGAGKTTLINAL 21
Cdd:cd01130    15 ILISGGTGSGKTTLLNAL 32
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 2-21 2.41e-03

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 36.58  E-value: 2.41e-03
                           10        20
                   ....*....|....*....|
gi 1376772071    2 QPIIITGGPGAGKTTLINAL 21
Cdd:smart00382   3 EVILIVGPPGSGKTTLARAL 22
 
Name Accession Description Interval E-value
COG3911 COG3911
Predicted ATPase [General function prediction only];
1-173 3.03e-68

Predicted ATPase [General function prediction only];


Pssm-ID: 443117  Cd Length: 180  Bit Score: 205.44  E-value: 3.03e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376772071   1 MQP--IIITGGPGAGKTTLINALGDMGYPTLAESSRQLIEQQSQLENGILPWFDLPGFARLCLTVMNEQKEQA-NQHPVA 77
Cdd:COG3911     1 MMTrrIVITGGPGSGKTTLLNALARRGYACVPEAGREIIREQQAIGGDALPWTDPAAFAELMLEGRLRQYREAeALSGPV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376772071  78 FLDRAIPDICGYLTQANLKIDEVYREASQG--YHSQALFCRPEASIYVQDDVRPYPFEEALEIHHALVRVYQELGYEVVE 155
Cdd:COG3911    81 FFDRGIPDVLAYLRLLGLPVPEHLETAAAAfrYDRTVFILPPWPEIYTQDAERKQSFEEALRTYEALVETYRALGYELIE 160

                         170
                  ....*....|....*...
gi 1376772071 156 VPFMSVEERALFVKSHLG 173
Cdd:COG3911   161 VPKGSVEERVDFILSRLG 178
AAA_28 pfam13521
AAA domain;
4-164 3.27e-36

AAA domain;


Pssm-ID: 433278 [Multi-domain]  Cd Length: 164  Bit Score: 123.53  E-value: 3.27e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376772071   4 IIITGGPGAGKTTLINALGDM-GYPTLAESSRQLIEQQSQLENGILPW-FDLPGFARLCLTVMNEQKEQANQHPVAFLDR 81
Cdd:pfam13521   2 IVITGGPSTGKTTLAEALAARfGYPVVPEAAREILEELGADGGDALPWvEDLLAFARGVLEAQLEDEAAAAANDLLFFDR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376772071  82 AIPDICGYLTQANLKIDEVYREA--SQGYHsQALFCRPEASIyVQDDVRPYPFEEALEIHHALVRVYQELGYEVVEVPFM 159
Cdd:pfam13521  82 GPLDTLAYSRAYGGPCPPELEAAarASRYD-LVFLLPPDPEI-VQDGERREDPEERERFHERLREALRELGIPVIIVPRG 159


                  ....*
gi 1376772071 160 SVEER 164
Cdd:pfam13521 160 SVEER 164
PRK05416 PRK05416
RNase adapter RapZ;
1-105 4.65e-06

RNase adapter RapZ;


Pssm-ID: 235450  Cd Length: 288  Bit Score: 45.47  E-value: 4.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376772071   1 MQPIIITGGPGAGKTTLINALGDMGY-------PTLaessrqlieqqsqlengilpwfdLPGFARLCltvmneqKEQANQ 73
Cdd:PRK05416    6 MRLVIVTGLSGAGKSVALRALEDLGYycvdnlpPSL-----------------------LPKLVELL-------AQSGGI 55

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1376772071  74 HPVA---------FLDRaIPDICGYLTQANLKIDEVYREAS 105
Cdd:PRK05416   56 RKVAvvidvrsrpFFDD-LPEALDELRERGIDVRVLFLDAS 95
CpaF COG4962
Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and ...
 4-21 4.28e-05

Pilus assembly protein, ATPase of CpaF family [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 443988 [Multi-domain]  Cd Length: 386  Bit Score: 42.85  E-value: 4.28e-05
                          10
                  ....*....|....*...
gi 1376772071   4 IIITGGPGAGKTTLINAL 21
Cdd:COG4962   185 ILVSGGTGSGKTTLLNAL 202
ATPase pfam06745
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and ...
 2-43 2.26e-04

KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and eukaryotes. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.


Pssm-ID: 429095 [Multi-domain]  Cd Length: 231  Bit Score: 40.31  E-value: 2.26e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1376772071   2 QPIIITGGPGAGKTT-----LINALGDMGYP----TLAESSRQLIEQQSQL 43
Cdd:pfam06745  20 RVVLITGGPGTGKTIfglqfLYNGALKYGEPgvfvTLEEPPEDLRENARSF 70
VirB11-like_ATPase cd01130
Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, ...
 4-21 2.73e-04

Type IV secretory pathway component VirB11-like; Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir (virulence) proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the bacterial Ti (tumor-inducing)-plasmid into plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11-related ATPases include Sulfolobus acidocaldarius FlaI, which plays key roles in archaellum (archaeal flagellum) assembly and motility functions, and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.


Pssm-ID: 410874 [Multi-domain]  Cd Length: 177  Bit Score: 39.45  E-value: 2.73e-04
                          10
                  ....*....|....*...
gi 1376772071   4 IIITGGPGAGKTTLINAL 21
Cdd:cd01130    15 ILISGGTGSGKTTLLNAL 32
RecD COG0507
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ...
 4-21 4.14e-04

ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];


Pssm-ID: 440273 [Multi-domain]  Cd Length: 514  Bit Score: 39.96  E-value: 4.14e-04
                          10
                  ....*....|....*...
gi 1376772071   4 IIITGGPGAGKTTLINAL 21
Cdd:COG0507   143 SVLTGGAGTGKTTTLRAL 160
ATP_bind_2 pfam03668
P-loop ATPase protein family; This family contains an ATP-binding site and could be an ATPase ...
 1-80 5.45e-04

P-loop ATPase protein family; This family contains an ATP-binding site and could be an ATPase (personal obs:C Yeats).


Pssm-ID: 397641  Cd Length: 284  Bit Score: 39.41  E-value: 5.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376772071   1 MQPIIITGGPGAGKTTLINALGDMGY-----------PTLAESSRQLIEQQSQLENgILPWFDLPGFARLcLTVMNEQKE 69
Cdd:pfam03668   1 IDLVIITGRSGAGKSVALRALEDLGYycvdnlppqllPRLVDFLLAAGSRISSVAV-VMDVRNRPFSGDL-DEQRNELAT 78

                          90
                  ....*....|.
gi 1376772071  70 QANQHPVAFLD 80
Cdd:pfam03668  79 RAITPRILFLE 89
DEXSc_RecD-like cd17933
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ...
 4-21 6.22e-04

DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.


Pssm-ID: 350691 [Multi-domain]  Cd Length: 155  Bit Score: 38.30  E-value: 6.22e-04
                          10
                  ....*....|....*...
gi 1376772071   4 IIITGGPGAGKTTLINAL 21
Cdd:cd17933    15 SVLTGGAGTGKTTTLKAL 32
NadR3 COG3172
Nicotinamide riboside kinase [Coenzyme transport and metabolism]; Nicotinamide riboside kinase ...
 4-173 1.23e-03

Nicotinamide riboside kinase [Coenzyme transport and metabolism]; Nicotinamide riboside kinase is part of the Pathway/BioSystem: NAD biosynthesis


Pssm-ID: 442405 [Multi-domain]  Cd Length: 178  Bit Score: 37.88  E-value: 1.23e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376772071   4 IIITGGPGAGKTTLINALGD-MGYPTLAESSRQLIEQqsqlENGILPWFDLPGFARlcLTVMNEQKEQANQHPVAFLDRA 82
Cdd:COG3172    11 IVLLGAESTGKTTLARALAAhYNTPWVPEYGREYLEE----KGRALTYDDLLAIAR--GQLALEDAAAKRANKLLFCDTD 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376772071  83 IPDICGYLTQANLKIDEVYREASQGYHSQA-LFCRPEASiYVQDDVRPYPfEEALEIHHALVRVYQELGyevveVPFM-- 159
Cdd:COG3172    85 ALTTKVYSELYFGKCPPWLEALAAQRRYDLyLLLDPDIP-WVADGLRDGP-EVREEFQQLLREELEERG-----IPYVvi 157

                         170
                  ....*....|....*.
gi 1376772071 160 --SVEERALFVKSHLG 173
Cdd:COG3172   158 sgDYEERLEQALAAID 173
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
 2-21 2.41e-03

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 36.58  E-value: 2.41e-03
                           10        20
                   ....*....|....*....|
gi 1376772071    2 QPIIITGGPGAGKTTLINAL 21
Cdd:smart00382   3 EVILIVGPPGSGKTTLARAL 22
cobW pfam02492
CobW/HypB/UreG, nucleotide-binding domain; This domain is found in HypB, a hydrogenase ...
 4-21 4.74e-03

CobW/HypB/UreG, nucleotide-binding domain; This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.


Pssm-ID: 396860  Cd Length: 179  Bit Score: 36.08  E-value: 4.74e-03
                          10
                  ....*....|....*...
gi 1376772071   4 IIITGGPGAGKTTLINAL 21
Cdd:pfam02492   3 TVITGFLGSGKTTLLNHL 20
THEP1 COG1618
Nucleoside-triphosphatase THEP1 [Nucleotide transport and metabolism];
4-26 5.29e-03

Nucleoside-triphosphatase THEP1 [Nucleotide transport and metabolism];


Pssm-ID: 441225 [Multi-domain]  Cd Length: 175  Bit Score: 36.03  E-value: 5.29e-03
                          10        20
                  ....*....|....*....|....*..
gi 1376772071   4 IIITGGPGAGKTTLI----NALGDMGY 26
Cdd:COG1618     3 IFITGRPGVGKTTLLlkvvEELRDEGL 29
NTPase_1 pfam03266
NTPase; This domain is found across all species from bacteria to human, and the function was ...
 4-27 6.45e-03

NTPase; This domain is found across all species from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme. The sequence carries both a Walker A and Walker B motif which together are characteriztic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue.


Pssm-ID: 460869  Cd Length: 168  Bit Score: 35.68  E-value: 6.45e-03
                          10        20
                  ....*....|....*....|....*...
gi 1376772071   4 IIITGGPGAGKTTL----INALGDMGYP 27
Cdd:pfam03266   2 IFITGPPGVGKTTLvlkvAELLKSSGVK 29
Srp102 COG2229
Signal recognition particle receptor subunit beta, a GTPase [Intracellular trafficking, ...
 4-21 6.50e-03

Signal recognition particle receptor subunit beta, a GTPase [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 441830 [Multi-domain]  Cd Length: 189  Bit Score: 35.57  E-value: 6.50e-03
                          10
                  ....*....|....*...
gi 1376772071   4 IIITGGPGAGKTTLINAL 21
Cdd:COG2229    15 IVYAGPFGAGKTTFVRSI 32
ABCD_peroxisomal_ALDP cd03223
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ...
 6-82 7.15e-03

ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).


Pssm-ID: 213190 [Multi-domain]  Cd Length: 166  Bit Score: 35.59  E-value: 7.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1376772071   6 ITGGPGAGKTTLINAL--------GDMGYPTLAESSrqLIEQQSQLENG------ILPWFDL--PG------FARLCLTv 63
Cdd:cd03223    32 ITGPSGTGKSSLFRALaglwpwgsGRIGMPEGEDLL--FLPQRPYLPLGtlreqlIYPWDDVlsGGeqqrlaFARLLLH- 108

                          90
                  ....*....|....*....
gi 1376772071  64 mneqkeqanQHPVAFLDRA 82
Cdd:cd03223   109 ---------KPKFVFLDEA 118
VirB11 COG0630
Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell ...
 2-21 7.34e-03

Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI [Cell motility, Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440395 [Multi-domain]  Cd Length: 462  Bit Score: 36.21  E-value: 7.34e-03
                          10        20
                  ....*....|....*....|
gi 1376772071   2 QPIIITGGPGAGKTTLINAL 21
Cdd:COG0630   291 KSVLVAGGTASGKTTLLNAL 310
YejR COG0523
Zinc metallochaperone YeiR/ZagA and related GTPases, G3E family [General function prediction ...
 1-21 7.74e-03

Zinc metallochaperone YeiR/ZagA and related GTPases, G3E family [General function prediction only];


Pssm-ID: 440289 [Multi-domain]  Cd Length: 318  Bit Score: 35.92  E-value: 7.74e-03
                          10        20
                  ....*....|....*....|....
gi 1376772071   1 MQPI---IITGGPGAGKTTLINAL 21
Cdd:COG0523     1 DKRIpvtVLTGFLGAGKTTLLNHL 24
AAA_19 pfam13245
AAA domain;
3-20 7.94e-03

AAA domain;


Pssm-ID: 433059 [Multi-domain]  Cd Length: 136  Bit Score: 34.89  E-value: 7.94e-03
                          10
                  ....*....|....*...
gi 1376772071   3 PIIITGGPGAGKTTLINA 20
Cdd:pfam13245  13 VVLLTGGPGTGKTTTIRH 30
PRK09435 PRK09435
methylmalonyl Co-A mutase-associated GTPase MeaB;
6-39 8.51e-03

methylmalonyl Co-A mutase-associated GTPase MeaB;


Pssm-ID: 236515  Cd Length: 332  Bit Score: 35.95  E-value: 8.51e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 1376772071   6 ITGGPGAGKTTLINALGDMgyptlaessrqLIEQ 39
Cdd:PRK09435   61 ITGVPGVGKSTFIEALGMH-----------LIEQ 83
PRK13764 PRK13764
ATPase; Provisional
 4-44 9.32e-03

ATPase; Provisional


Pssm-ID: 184311 [Multi-domain]  Cd Length: 602  Bit Score: 35.97  E-value: 9.32e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1376772071   4 IIITGGPGAGKTTLINALG----DMGY--PTLaESSRQL-----IEQQSQLE 44
Cdd:PRK13764  260 ILIAGAPGAGKSTFAQALAefyaDMGKivKTM-ESPRDLqvppeITQYSKLE 310
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH