|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
13-329 |
3.08e-92 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 277.76 E-value: 3.08e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 13 SVSLKQFVSRHINEIGLLVVIAILYLVFSLNAPGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVAFVSV 92
Cdd:COG1172 5 TTTARSLLRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 93 CLAFLLQ-FEVPLAIACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENEVLDWLGGQ 171
Cdd:COG1172 85 VAALLLVaLGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQGS 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 172 FLGVPVSALIMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAG 251
Cdd:COG1172 165 LLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPN 244
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1379571292 252 AANGLEFDVIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVLANILLTQRSSK 329
Cdd:COG1172 245 AGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRRAR 322
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
60-320 |
2.32e-73 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 227.29 E-value: 2.32e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 60 AATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLL-QFEVPLAIACLLVLLLGALMGTLAGVLRGVFNVPSFVATL 138
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLvNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 139 GLWSALRGMGLFMTNALPVPIDENEVLDWLG-GQFLGVPVSALIMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGI 217
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFFLGgGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 218 NVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVL 297
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240
|
250 260
....*....|....*....|...
gi 1379571292 298 LGINSFFQQVVRGVIIVVAVLAN 320
Cdd:cd06579 241 LGVSSFWQQIVKGAILLLAVALD 263
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
9-320 |
5.56e-63 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 202.64 E-value: 5.56e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 9 PQGKSVSLKQFVSRHINEIGLLVVIAIlylVFSLNaPGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVA 88
Cdd:PRK09512 5 VSGRRYFTKAWLIEQKSLIALLVLIAI---VSTLS-PNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 89 FVSVCLAFLLQFEVPLAIACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENEVLD-- 166
Cdd:PRK09512 81 LTGAVAASIVGIEVNALVAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTGFTDNADlf 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 167 -WLG-GQFLGVPVSALIMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAAR 244
Cdd:PRK09512 161 gWFGiGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVAR 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1379571292 245 LGSGNAGAANGLEFDVIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVLAN 320
Cdd:PRK09512 241 LSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVD 316
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
23-317 |
4.01e-37 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 136.43 E-value: 4.01e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 23 HINEIGLLVVIAILYLVFSLNAPG-FISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVAFV-SVCLAFLLQF 100
Cdd:NF040906 1 NLRQYGMLIALVAIVVLFQILTGGiLLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVgAVAAVLMVNW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 101 EVPLAIAcllvLLLGALMGTLAGVLRGVF----NVPSFVATLG------------------------------------- 139
Cdd:NF040906 81 GMPWWLA----VLLCLLVGALIGAWQGFWvayvGIPAFIVTLAgmlvfrgltlvvlggqsigpfpdgfqkissgflpdlf 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 140 --------------------LWSALRG-------------MGLFMTNALPVPIDENeVLDWLGGQFLGVPVSALIMMVLF 186
Cdd:NF040906 157 ggtglhlltlllgvlaaaalVWSQLRGrrrrikyglevepMALFIAKLVLIAAAIL-FFTYLLASYRGLPNVLIILGVLI 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 187 ALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFDVIAAVVV 266
Cdd:NF040906 236 LVYSFVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFI 315
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1379571292 267 GGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAV 317
Cdd:NF040906 316 GGASASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAV 366
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
55-317 |
1.61e-17 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 80.77 E-value: 1.61e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 55 NVLRDAATIGIAAWAMTLII-ISGEIDVSVGPMVAF-VSVCLAFLLQFEVPLAIACLLVLLLGALMGTLAGVLRGVFNVP 132
Cdd:pfam02653 4 NILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLgAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRLKIN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 133 SFVATLGLWSALRGMGLFMTNALPVPIDENEVLDWLGGQFLGVPVSALIMMVLFAL-----FVFISRKTAFGRSVFAVGG 207
Cdd:pfam02653 84 EVIITLLLNLAALGLALFLVTGILGGEGGTSGITGPSGFPGAFLSFAFAFIFLLALllvlaLWLLLYRTKFGRALRAVGE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 208 NATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAAN-GLEFDVIAAVVVGGTalsggrGSLFGTLLGVL 286
Cdd:pfam02653 164 NEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSNFGvGLGLDAIAAVVLGGA------GSPIGVVIGSL 237
|
250 260 270
....*....|....*....|....*....|..
gi 1379571292 287 VITLIGN-GLVLLGINSFFQQVVRGVIIVVAV 317
Cdd:pfam02653 238 IIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
13-329 |
3.08e-92 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 277.76 E-value: 3.08e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 13 SVSLKQFVSRHINEIGLLVVIAILYLVFSLNAPGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVAFVSV 92
Cdd:COG1172 5 TTTARSLLRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 93 CLAFLLQ-FEVPLAIACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENEVLDWLGGQ 171
Cdd:COG1172 85 VAALLLVaLGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGGRPISGLPDAFRALGQGS 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 172 FLGVPVSALIMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAG 251
Cdd:COG1172 165 LLGIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPN 244
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1379571292 252 AANGLEFDVIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVLANILLTQRSSK 329
Cdd:COG1172 245 AGSGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLGVSSYWQQIVKGAIILLAVLLDRLRRRRRAR 322
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
60-320 |
2.32e-73 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 227.29 E-value: 2.32e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 60 AATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLL-QFEVPLAIACLLVLLLGALMGTLAGVLRGVFNVPSFVATL 138
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLvNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 139 GLWSALRGMGLFMTNALPVPIDENEVLDWLG-GQFLGVPVSALIMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGI 217
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLPPLFSFFLGgGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARLSGI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 218 NVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVL 297
Cdd:cd06579 161 NVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNGLNL 240
|
250 260
....*....|....*....|...
gi 1379571292 298 LGINSFFQQVVRGVIIVVAVLAN 320
Cdd:cd06579 241 LGVSSFWQQIVKGAILLLAVALD 263
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
4-317 |
1.25e-67 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 216.91 E-value: 1.25e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 4 SSLPLPQGKSVSLKQFVSRHINEIGLLVVIAILYLVFS-LNAPGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVS 82
Cdd:COG4214 2 STTAAPGGAVRSLRRLLGGDLRSLGMIIALVVIWIVFQiLTGGTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLS 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 83 VGPMVAFVSVCLAFLL-QFEVPLAIACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPIDE 161
Cdd:COG4214 82 VGSVSGFVGAVAAVLMvNWGLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGGGTIAPFD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 162 NEVL--------DWLG--------------------------------------------------------GQFLGVPV 177
Cdd:COG4214 162 PTFQaigngflpDILGtlswvlgavavaayvalqlrsrrrrrryglpveplwlfvlklallavlilgavyllNSYRGIPI 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 178 SALIMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLE 257
Cdd:COG4214 242 VVLILLVLVVVYTFVLTRTVFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFE 321
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 258 FDVIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAV 317
Cdd:COG4214 322 LDAIAAAVIGGTSLFGGVGTVYGAVIGALVMGSLNNGMSLLGVDSDWQQIVKGLVLLLAV 381
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
9-320 |
5.56e-63 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 202.64 E-value: 5.56e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 9 PQGKSVSLKQFVSRHINEIGLLVVIAIlylVFSLNaPGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVA 88
Cdd:PRK09512 5 VSGRRYFTKAWLIEQKSLIALLVLIAI---VSTLS-PNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 89 FVSVCLAFLLQFEVPLAIACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENEVLD-- 166
Cdd:PRK09512 81 LTGAVAASIVGIEVNALVAVPAALALGAAIGAVTGVIVAKGKVQAFIATLVMMLLLRGVTMVYTDGSPINTGFTDNADlf 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 167 -WLG-GQFLGVPVSALIMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAAR 244
Cdd:PRK09512 161 gWFGiGRPLGIPTPVWIMAIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVAR 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1379571292 245 LGSGNAGAANGLEFDVIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVLAN 320
Cdd:PRK09512 241 LSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVD 316
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
20-318 |
2.59e-56 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 186.04 E-value: 2.59e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 20 VSRHINEIGLLVVIAILYLVFSLNAPGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLLQ 99
Cdd:PRK11285 23 LWRIWDQYGMLVVFAVLFIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAVVIN 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 100 FEVPLAIACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENEVLDWLGGQFLGVPVSA 179
Cdd:PRK11285 103 ATESLWLGVAAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDGKAVGISDERFFALGYANFFGVPAPI 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 180 LIMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFD 259
Cdd:PRK11285 183 WLTVACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSIGFELI 262
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1379571292 260 VIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVL 318
Cdd:PRK11285 263 VISACVLGGVSLKGGIAKISGVVAGVLILGTVENAMNLLNISPFYQYVVRGLILLAAVL 321
|
|
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
30-291 |
5.20e-45 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 155.88 E-value: 5.20e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 30 LVVIAILYLVFSLNAPGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLL-QFEVPLAIAC 108
Cdd:PRK11618 12 IGVFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLIgDYGWSPLLAF 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 109 LLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGlFMTNALPVPIDeNEVLDWLGGQFLGVP------VSALIM 182
Cdd:PRK11618 92 PLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVS-FLVSEESIPIN-HPFYDTLSSLAWKLPgggrlsAMALIM 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 183 MVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFDVIA 262
Cdd:PRK11618 170 LAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAAVGVELDAIA 249
|
250 260
....*....|....*....|....*....
gi 1379571292 263 AVVVGGTALSGGRGSLFGTLLGVLVITLI 291
Cdd:PRK11618 250 AVVIGGTLLTGGVGTVLGTLFGVLIQGLI 278
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
22-322 |
1.77e-39 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 142.13 E-value: 1.77e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 22 RHINEIGLLVVIAILYLVFSLNAPGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLLQ-- 99
Cdd:PRK09478 11 TYLKEGGIYVVLLVLLAIIIIQDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQsm 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 100 ----------FEVPLAIACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPV-PI---DENEVL 165
Cdd:PRK09478 91 dnankvfpelATMPIALVILIVCAIGAVIGLINGLIIAYLNVTPFIATLGTMIIVYGINSLYYDFVGAsPIsgfDSGFST 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 166 DWLGGQFLG-VPVSALIMMVLFALFV--FISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLA 242
Cdd:PRK09478 171 FAQGFVALGsFRLSYITFYALIAVAFvwVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEA 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 243 ARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVLANIL 322
Cdd:PRK09478 251 GRIGSATNNLGFMYELDAIAACVVGGVSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDSL 330
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
28-317 |
2.84e-39 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 140.68 E-value: 2.84e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 28 GLLVVIAILYLVFSLNAPG-FISLNN-QMNVLRDAATIGIAAWAMTLIIISGeIDVSVGPMVAFVSVCLAFLLQFEV-PL 104
Cdd:PRK09699 13 GTFFILAIIVAIFGSLSPEyFLTTNNiTQIFVQSSVTVLIGMGEFFAILVAG-IDLSVGAILALSGMVTAKLMLAGVdPF 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 105 AIACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENEVLDWLGGQFLGVPVSALIMMV 184
Cdd:PRK09699 92 LAALIGGVLVGGALGAINGCLVNWTGLHPFIITLGTNAIFRGITLVISDANSVYGFSFDFVNFFAASVIGIPVPVIFSLI 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 185 LFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFDVIAAV 264
Cdd:PRK09699 172 VALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASA 251
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1379571292 265 VVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAV 317
Cdd:PRK09699 252 IIGGTSFFGGKGRIFSVVIGGLIIGTINNGLNILQVQTYYQLVVMGGLIIAAV 304
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
23-317 |
4.01e-37 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 136.43 E-value: 4.01e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 23 HINEIGLLVVIAILYLVFSLNAPG-FISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVAFV-SVCLAFLLQF 100
Cdd:NF040906 1 NLRQYGMLIALVAIVVLFQILTGGiLLRPLNVTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVgAVAAVLMVNW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 101 EVPLAIAcllvLLLGALMGTLAGVLRGVF----NVPSFVATLG------------------------------------- 139
Cdd:NF040906 81 GMPWWLA----VLLCLLVGALIGAWQGFWvayvGIPAFIVTLAgmlvfrgltlvvlggqsigpfpdgfqkissgflpdlf 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 140 --------------------LWSALRG-------------MGLFMTNALPVPIDENeVLDWLGGQFLGVPVSALIMMVLF 186
Cdd:NF040906 157 ggtglhlltlllgvlaaaalVWSQLRGrrrrikyglevepMALFIAKLVLIAAAIL-FFTYLLASYRGLPNVLIILGVLI 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 187 ALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFDVIAAVVV 266
Cdd:NF040906 236 LVYSFVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRVTFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFI 315
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1379571292 267 GGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAV 317
Cdd:NF040906 316 GGASASGGVGTVVGAIIGALVMGVLNNGMSILGIGIDWQQVIKGLVLLAAV 366
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
26-314 |
1.38e-34 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 129.08 E-value: 1.38e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 26 EIGLLVVIAILYLVFSLNAPGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLLQFEVPLA 105
Cdd:PRK15432 10 ELTALLAIVLLFVLLGFLDRQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLLNAGYSLP 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 106 IACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPIDENEVLDWLGGQFLGVPVSALIMMVL 185
Cdd:PRK15432 90 VACLATLLLGLLAGFFNGVLVAWLRIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPILLGISPIGWLTLIL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 186 FALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFDVIAAVV 265
Cdd:PRK15432 170 ILAMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIAACV 249
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 1379571292 266 VGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIV 314
Cdd:PRK15432 250 LGGISLLGGSGTIIGAVLGAYFLTQIDSVLVLLRIPAWWNDFIAGLVLL 298
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
26-318 |
2.94e-24 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 100.67 E-value: 2.94e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 26 EIGLLVVIAILYLVFSLNAPGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLLQFEVPLA 105
Cdd:PRK15038 8 ELALAALLVIEILAFGLINPRMLDINVLLFSTSDFICIGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGVPMP 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 106 IACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPIDEN------EVLDWLGGQFLGVPVSA 179
Cdd:PRK15038 88 LAILLTLLLGALCGLINAGLIIYTGVNPLVITLGTLYLFGGSALLLSGMAGATGYEGiggfpmAFTDFANLDVLGLPVPL 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 180 LIMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFD 259
Cdd:PRK15038 168 IIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMP 247
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1379571292 260 VIAAVVVGGTALSGGRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVL 318
Cdd:PRK15038 248 AITAVVLGGANIYGGSGSIIGTALAVLLVGYLQQGLQMAGVPNQISSALSGALLIVVVV 306
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
55-317 |
1.61e-17 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 80.77 E-value: 1.61e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 55 NVLRDAATIGIAAWAMTLII-ISGEIDVSVGPMVAF-VSVCLAFLLQFEVPLAIACLLVLLLGALMGTLAGVLRGVFNVP 132
Cdd:pfam02653 4 NILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLgAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRLKIN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 133 SFVATLGLWSALRGMGLFMTNALPVPIDENEVLDWLGGQFLGVPVSALIMMVLFAL-----FVFISRKTAFGRSVFAVGG 207
Cdd:pfam02653 84 EVIITLLLNLAALGLALFLVTGILGGEGGTSGITGPSGFPGAFLSFAFAFIFLLALllvlaLWLLLYRTKFGRALRAVGE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 208 NATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAAN-GLEFDVIAAVVVGGTalsggrGSLFGTLLGVL 286
Cdd:pfam02653 164 NEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPSNFGvGLGLDAIAAVVLGGA------GSPIGVVIGSL 237
|
250 260 270
....*....|....*....|....*....|..
gi 1379571292 287 VITLIGN-GLVLLGINSFFQQVVRGVIIVVAV 317
Cdd:pfam02653 238 IIGLVQSlGLGALGSPPELSLLVLGALLILVL 269
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
118-317 |
1.80e-15 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 75.01 E-value: 1.80e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 118 MGTLAGVLRGV----FNVPSFVATLGLWSALRGMGLFMTNALPVPIDENEVLDWLGGQF-----LGVPVSALIMMVLFAL 188
Cdd:cd06574 56 AGAAAGLVTGFlhtrLKINGLLAGILIMIGLYSINLRIMGGPNIPLGTRDTLLGLLLLFgisgtLSIPVVLLLIVLLVLF 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 189 FVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFDVIAAVVVGG 268
Cdd:cd06574 136 LVIWFLRTKLGLAMRATGDNPDMARSLGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGG 215
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1379571292 269 TALSG--GRGSLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAV 317
Cdd:cd06574 216 AIVGRrtIKASILGVIIGAILYRIALALALGSGLIPSDLKLITAGVIVLVL 266
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
179-318 |
5.25e-13 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 67.85 E-value: 5.25e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 179 ALIMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAAN-GLE 257
Cdd:cd06581 128 VLAVLLLVLLLLRRLVRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVSPESFGfALS 207
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1379571292 258 FDVIAAVVVggtalsGGRGSLFGTLLGVLVITLIGNglVLLGINSFFQQVVRGVIIVVAVL 318
Cdd:cd06581 208 IELLLMVVL------GGLGSLLGPVLGAALLVLLPE--LLRSLGPGLRLLVFGLLLILVVL 260
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
125-318 |
6.05e-13 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 68.17 E-value: 6.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 125 LRGVFNVPSFVATLGLWSALRGMGLFM--TNALPVPIDENEVLDWLG----GQFLGVPVSALIMMVLFALFVfisRKTAF 198
Cdd:COG0559 87 LRGAPPLALLLATIGLSLVLQGLVLLIfgADPRSFPALLSGSVELGGvsipAYRLFIIVVALVLLAALWLFL---RRTRL 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 199 GRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSgNAGAANGLEFDVIAAVVVGGTalsggrGSL 278
Cdd:COG0559 164 GLAMRAVAQNREAARLMGINVDRVIALTFALGAALAGLAGVLLAPIYSV-SPTMGFLLGLKAFAAVVLGGL------GSI 236
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1379571292 279 FGTLLGVLVITLIgNGLVLLGINSFFQQVVrGVIIVVAVL 318
Cdd:COG0559 237 PGAVVGGLLLGLA-ESLGAAYLPSGYKDVV-AFVLLILVL 274
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
179-318 |
1.06e-12 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 67.41 E-value: 1.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 179 ALIMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLE- 257
Cdd:COG4177 138 VLALLVLVLLLLRRLVRSRFGRALRAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGFVSPESFSFLLs 217
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1379571292 258 FDVIAAVVVggtalsGGRGSLFGTLLGVLVITLIGNGLVLLGinsFFQQVVRGVIIVVAVL 318
Cdd:COG4177 218 IEILLMVVL------GGLGSLLGPVLGAVLLVLLPELLRSLP---EYRLLIFGLLLILVVL 269
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
92-291 |
3.33e-10 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 59.75 E-value: 3.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 92 VCLAFLLQFEVPLAIACLLVLLLGALMGTL--AGVLRGVFNVP--SFVATLGLWSALRGMG--LFMTNALPVPIDENEVL 165
Cdd:cd06582 39 VAYTLLVALGLPFWLALLLALLVAALLGVLleRLVLRPLRGAPllTLLITFGGLLILLQGLllIFGGDPRVPPPPLLSGS 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 166 DWLGGQFLGVP--VSALIMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAA 243
Cdd:cd06582 119 VELGGVTIPPYrlFIIAVALVLLAALYLFLRRTRLGRAIRAVAQNPEAARLLGINVRRVFALTFALGAALAGLAGVLLAP 198
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1379571292 244 RLGSgNAGAANGLEFDVIAAVVVGGTalsggrGSLFGTLLGVLVITLI 291
Cdd:cd06582 199 ITGV-SPTMGLLLLLKAFAAVVLGGL------GSIPGAVVGGLLLGLA 239
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
119-332 |
2.31e-08 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 54.74 E-value: 2.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 119 GTLAGVLRGVFNVPSFVATLGL-WSALRGMGLFMTNALPVP---------IDENEVLDWLGGQFlGVPVSALIMMVLFAL 188
Cdd:COG4603 131 AAIPGLLKARFGVNEVITTLMLnYIALYLVNYLVRGPLRDPgsgfpqtppIPESARLPRLLPGT-RLHLGLLIALLAAVL 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 189 FVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTG-ILLAARLGSGNAGAANGLEFDVIAAVVVg 267
Cdd:COG4603 210 VWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGALAGLAGaVEVLGVQGRLTPGFSPGYGFTGIAVALL- 288
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1379571292 268 gtalsgGRGSLFGTLLGVLVITLIGNGLVLL----GINSFFQQVVRGVIIVVAVLANILLTQRSSKAKR 332
Cdd:COG4603 289 ------GRNNPLGIILAALLFGALYVGGDAMqralGVPSEIVDVIQGLIILFVLAADFLIRYRLRRRRR 351
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
180-316 |
2.39e-08 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 53.98 E-value: 2.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 180 LIMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTG-ILLAARLGSGNAGAANGLEF 258
Cdd:cd06580 99 LLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGaYLVLGVQGRFTEGMSAGYGF 178
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1379571292 259 DVIAAVVVggtalsgGRGSLFGTLLGVLVITLIGNGLVLL----GINSFFQQVVRGVIIVVA 316
Cdd:cd06580 179 IAIAVALL-------GRWNPLGILLAALLFGALEAGGIALqrsgGVPSELVQVLPGIIVLFV 233
|
|
| NupQ |
COG1079 |
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and ... |
167-268 |
8.53e-06 |
|
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and metabolism];
Pssm-ID: 440697 [Multi-domain] Cd Length: 309 Bit Score: 46.60 E-value: 8.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 167 WLGGQFLGVPVSALIMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLA-ARL 245
Cdd:COG1079 139 VLGPLLFGQSPLVYLALLLVPLVWWVLYRTRFGLRLRAVGENPAAADALGINVYRIRYLAVLIGGALAGLGGAYLSlGYV 218
|
90 100
....*....|....*....|...
gi 1379571292 246 GSGNAGAANGLEFDVIAAVVVGG 268
Cdd:COG1079 219 GSFTEGMTAGRGFIALAAVIFGR 241
|
|
| PRK10740 |
PRK10740 |
high-affinity branched-chain amino acid ABC transporter permease LivH; |
183-318 |
6.75e-03 |
|
high-affinity branched-chain amino acid ABC transporter permease LivH;
Pssm-ID: 182689 [Multi-domain] Cd Length: 308 Bit Score: 37.98 E-value: 6.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1379571292 183 MVLFALFVFIsRKTAFGRSVFAVGGNATAAQLCGINVRRVRILIFTLSGLLAAVTGILLAARLGSGNAgaanglEFDVIA 262
Cdd:PRK10740 166 LAMLALTIFI-RYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINP------YIGFMA 238
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1379571292 263 AVVVGGTALSGGRGSLFGTLLGVLVITlIGNGLVLLGINSFFQQVVRGVIIVVAVL 318
Cdd:PRK10740 239 GMKAFTAAVLGGIGSIPGAMIGGLILG-IAEALSSAYLSTEYKDVVSFALLILVLL 293
|
|
| |
