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Conserved domains on  [gi|1380798328|gb|PUP83009|]
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DUF2554 domain-containing protein [Salmonella enterica subsp. enterica]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2554 super family cl12417
Protein of unknown function (DUF2554); This family of proteins with unknown function appears ...
 1-76 2.49e-47

Protein of unknown function (DUF2554); This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.


The actual alignment was detected with superfamily member pfam10829:

Pssm-ID: 313921  Cd Length: 76  Bit Score: 144.47  E-value: 2.49e-47
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1380798328  1 MLTKTLSVVLLTCALFSGQLLAKQQDHAFVWFATGGHQLRHEADSDELRAAAEESAEGLRDHHNWQKSRKPESYFR 76
Cdd:pfam10829  1 MFTKALSVVLLTCALFSGQLLAGHKDHAFVWFANGDHQLRHEADSDELRAAAEESAEGLREHFNWQKSRKPEAGFR 76
 
Name Accession Description Interval E-value
DUF2554 pfam10829
Protein of unknown function (DUF2554); This family of proteins with unknown function appears ...
 1-76 2.49e-47

Protein of unknown function (DUF2554); This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.


Pssm-ID: 313921  Cd Length: 76  Bit Score: 144.47  E-value: 2.49e-47
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1380798328  1 MLTKTLSVVLLTCALFSGQLLAKQQDHAFVWFATGGHQLRHEADSDELRAAAEESAEGLRDHHNWQKSRKPESYFR 76
Cdd:pfam10829  1 MFTKALSVVLLTCALFSGQLLAGHKDHAFVWFANGDHQLRHEADSDELRAAAEESAEGLREHFNWQKSRKPEAGFR 76
 
Name Accession Description Interval E-value
DUF2554 pfam10829
Protein of unknown function (DUF2554); This family of proteins with unknown function appears ...
 1-76 2.49e-47

Protein of unknown function (DUF2554); This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.


Pssm-ID: 313921  Cd Length: 76  Bit Score: 144.47  E-value: 2.49e-47
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1380798328  1 MLTKTLSVVLLTCALFSGQLLAKQQDHAFVWFATGGHQLRHEADSDELRAAAEESAEGLRDHHNWQKSRKPESYFR 76
Cdd:pfam10829  1 MFTKALSVVLLTCALFSGQLLAGHKDHAFVWFANGDHQLRHEADSDELRAAAEESAEGLREHFNWQKSRKPEAGFR 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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