|
Name |
Accession |
Description |
Interval |
E-value |
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
254-402 |
2.04e-17 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 84.27 E-value: 2.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 254 LINLYIYRSQFDDAIKALDVVIAENPTNADYWNVKGSLYEAQKNMDQAVECFLKAIEISPNMPEALGNLGRIYFNQAiqr 333
Cdd:COG3914 118 LGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLG--- 194
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1391517395 334 nneiselsdnaqytkakdeevlpLFKKALPYYEKAHSLKPNEDEYMVALRGIYYNLGDAENLKKIEAQM 402
Cdd:COG3914 195 -----------------------RLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELL 240
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
251-353 |
2.94e-10 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 60.72 E-value: 2.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 251 ILKLINLYIYRSQFDDAIKALDVVIAENPTNADYWNVKGSLYEAQKNMDQAVECFLKAIEISPN-MPEALGNLGRI---- 325
Cdd:cd24142 3 LLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLGQLsgge 82
|
90 100 110
....*....|....*....|....*....|...
gi 1391517395 326 ----YFNQAIQR-NNEISELSDNAQYTKAKDEE 353
Cdd:cd24142 83 ealqYYEKGIEIlEEELQALQAASAEAEEEAEE 115
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
164-394 |
2.36e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 59.33 E-value: 2.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 164 GQIRYNAAIAALQSGDHQLAIKALSDARNGGYNENDVYKFLVY------EYEQTKDTVNLINTLKEGDQ----------- 226
Cdd:TIGR02917 56 AEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARayllqgKFQQVLDELPGKTLLDDEGAaellalrglay 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 227 --RFKNEMVEVTDEQGNVSMQKENTYILKLINLYIYRSQFDDAIKALDVVIAENPTNADYWNVKGSLYEAQKNMDQAVEC 304
Cdd:TIGR02917 136 lgLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 305 FLKAIEISPNMPEALGNLGRI-----YFNQAIQRNNEISELSDN---AQYTKAKDEEVLPLFKKALPYYEKAHSLKPNED 376
Cdd:TIGR02917 216 YRKAIALRPNNIAVLLALATIlieagEFEEAEKHADALLKKAPNsplAHYLKALVDFQKKNYEDARETLQDALKSAPEYL 295
|
250
....*....|....*...
gi 1391517395 377 EYMVALRGIYYNLGDAEN 394
Cdd:TIGR02917 296 PALLLAGASEYQLGNLEQ 313
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
165-315 |
1.44e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 53.27 E-value: 1.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 165 QIRYNAAIAALQSGDHQLAIKALSDARNGGYNENDVYKFLVYEYEQTKDTVNLINTLKEGdqrfknemvevtdeqgnVSM 244
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEA-----------------LEL 67
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1391517395 245 QKENTYILKLI-NLYIYRSQFDDAIKALDVVIAENPTNADYWNVKGSLYEAQKNMDQAVECFLKAIEISPNM 315
Cdd:COG4783 68 DPDEPEARLNLgLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
252-316 |
8.17e-06 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 43.09 E-value: 8.17e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1391517395 252 LKLINLYIYRSQFDDAIKALDVVIAENPT---NADYWNVKGSLYEAQKNMDQAVECFLKAIEISPNMP 316
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
282-315 |
3.12e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.81 E-value: 3.12e-04
10 20 30
....*....|....*....|....*....|....
gi 1391517395 282 ADYWNVKGSLYEAQKNMDQAVECFLKAIEISPNM 315
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| PRK12450 |
PRK12450 |
foldase protein PrsA; Reviewed |
53-286 |
5.22e-04 |
|
foldase protein PrsA; Reviewed
Pssm-ID: 138982 [Multi-domain] Cd Length: 309 Bit Score: 41.61 E-value: 5.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 53 NKFFELEMNKKIIGKEANEAeMYQALEKSTDLFNKALALDTLPNEKGKVKPRYLKDIRNNFKNNLDNYAnagiyyFNGKD 132
Cdd:PRK12450 65 SRVFETQYANKVSDKEVEKA-YKQTADQYGTSFKTVLAQSGLTPETYKKQIRLTKLVEYAVKEQAKNET------ISKKD 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 133 FKKAYDIWTDYVNiTKMPIMDKQEmPADSIVGQIRYNAAIAAlqsgdhqlaikALSDARNGGYNENDVYKFLVYEYEQTK 212
Cdd:PRK12450 138 YRQAYDAYTPTMT-AEIMQFEKEE-DAKAALEAVKAEGADFA-----------AIAKEKTIAADKKTTYTFDSGETTLPA 204
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1391517395 213 DTVNLINTLKEGDqrfKNEMVEVTDEqgnvSMQKENTYILKLINLYIYRSQFDDAIKAL-DVVIAENPTNADYWN 286
Cdd:PRK12450 205 EVVRAASGLKEGN---RSEIITALDP----ATSKRTYHIIKVTKKATKKADWKAYQKRLkDIIVTGKLKDPDFQN 272
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
277-374 |
6.43e-04 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 40.43 E-value: 6.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 277 ENPTNADY--WNVkGSLYEAQKNMDQAVECFLKAIEISPNMPEALGNLGRIYFNQAiqrnnEISElsdnaqyTKAKDEEV 354
Cdd:PRK02603 66 EDPNDRSYilYNM-GIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRG-----EKAE-------EAGDQDEA 132
|
90 100
....*....|....*....|
gi 1391517395 355 LPLFKKALPYYEKAHSLKPN 374
Cdd:PRK02603 133 EALFDKAAEYWKQAIRLAPN 152
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
254-402 |
2.04e-17 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 84.27 E-value: 2.04e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 254 LINLYIYRSQFDDAIKALDVVIAENPTNADYWNVKGSLYEAQKNMDQAVECFLKAIEISPNMPEALGNLGRIYFNQAiqr 333
Cdd:COG3914 118 LGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLG--- 194
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1391517395 334 nneiselsdnaqytkakdeevlpLFKKALPYYEKAHSLKPNEDEYMVALRGIYYNLGDAENLKKIEAQM 402
Cdd:COG3914 195 -----------------------RLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELL 240
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
256-393 |
9.99e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 73.50 E-value: 9.99e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 256 NLYIYRSQFDDAIKALDVVIAENPTNADYWNVKGSLYEAQKNMDQAVECFLKAIEISPNMPEALGNLGRIY-----FNQA 330
Cdd:COG0457 16 LAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALqalgrYEEA 95
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1391517395 331 IQRNNEISELSDN---AQYTKAKDEEVLPLFKKALPYYEKAHSLKPNEDEYMVALRGIYYNLGDAE 393
Cdd:COG0457 96 LEDYDKALELDPDdaeALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
167-402 |
4.90e-13 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 68.99 E-value: 4.90e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 167 RYNAAIAALQSGDHQLAIKALSDARNGGYNENDVYKFLVYEYEQTKDTVNLI----NTLKEGDQRFK--NEMVEVTDEQG 240
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIrihqKLLERDPDRAEalLELAQDYLKAG 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 241 N-----------VSMQKENTYIL-KLINLYIYRSQFDDAIKALDVVIAENPTNADYWNVKGSLYEAQKNMDQAVECFLKA 308
Cdd:COG2956 91 LldraeelleklLELDPDDAEALrLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 309 IEISPNMPEALGNLGRIY-----FNQAIQRNNEISELSDNAQYTKAKDEEV---LPLFKKALPYYEKAHSLKPNEDEYMV 380
Cdd:COG2956 171 LKLDPDCARALLLLAELYleqgdYEEAIAALERALEQDPDYLPALPRLAELyekLGDPEEALELLRKALELDPSDDLLLA 250
|
250 260
....*....|....*....|..
gi 1391517395 381 ALRGIYYNLGDAENLKKIEAQM 402
Cdd:COG2956 251 LADLLERKEGLEAALALLERQL 272
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
266-385 |
7.17e-13 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 65.03 E-value: 7.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 266 DAIKALDVVIAENPTNADYWNVKGSLYEAQKNMDQAVECFLKAIEISPNMPEALGNLGRIY------------FNQAIQR 333
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALlaagdteeaeelLERALAL 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1391517395 334 NNEiselSDNAQYTKAKDEEVLPLFKKALPYYEKAHSLKPNEDEYMVALRGI 385
Cdd:COG4235 81 DPD----NPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
250-375 |
1.11e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 64.83 E-value: 1.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 250 YILKLINLYIYRSQFDDAIKALDVVIAENPTNADYWNVKGSLYEAQKNMDQAVECFLKAIEISPNMPEALGNLGRIYFNQ 329
Cdd:COG4783 6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1391517395 330 --------AIQRNNEISELSDNAQYTKAKDEEVLPLFKKALPYYEKAHSLKPNE 375
Cdd:COG4783 86 gdydealaLLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
275-393 |
5.25e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 65.41 E-value: 5.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 275 IAENPTNADYWNVKGSLYEAQKNMDQAVECFLKAIEISPNMPEALGNLGRIY------------FNQAIQRNNEISElsd 342
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYlrlgryeealadYEQALELDPDDAE--- 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1391517395 343 nAQYTKAKDEEVLPLFKKALPYYEKAHSLKPNEDEYMVALRGIYYNLGDAE 393
Cdd:COG0457 78 -ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYD 127
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
251-353 |
2.94e-10 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 60.72 E-value: 2.94e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 251 ILKLINLYIYRSQFDDAIKALDVVIAENPTNADYWNVKGSLYEAQKNMDQAVECFLKAIEISPN-MPEALGNLGRI---- 325
Cdd:cd24142 3 LLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLGQLsgge 82
|
90 100 110
....*....|....*....|....*....|...
gi 1391517395 326 ----YFNQAIQR-NNEISELSDNAQYTKAKDEE 353
Cdd:cd24142 83 ealqYYEKGIEIlEEELQALQAASAEAEEEAEE 115
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
257-329 |
9.42e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 55.18 E-value: 9.42e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1391517395 257 LYIYRSQFDDAIKALDVVIAENPTNADYWNVKGSLYEAQKNMDQAVEcFLKAIEISPNMPEALGNLGRIYFNQ 329
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLEL 72
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
256-402 |
1.02e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 58.48 E-value: 1.02e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 256 NLYIYRSQFDDAIKALDVVIAENPTNADYWNVKGSLYEAQKNMDQAVECFLKAIEISPNMPEALGNLGRIYFNQAiQRNN 335
Cdd:COG0457 84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLG-RYEE 162
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1391517395 336 EISELSDNAQYTKAKDEEVLPLFKKALPYYEKAHSLKPNEDEYMVALRGIYYNLGDAENLKKIEAQM 402
Cdd:COG0457 163 ALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALAL 229
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
164-394 |
2.36e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 59.33 E-value: 2.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 164 GQIRYNAAIAALQSGDHQLAIKALSDARNGGYNENDVYKFLVY------EYEQTKDTVNLINTLKEGDQ----------- 226
Cdd:TIGR02917 56 AEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARayllqgKFQQVLDELPGKTLLDDEGAaellalrglay 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 227 --RFKNEMVEVTDEQGNVSMQKENTYILKLINLYIYRSQFDDAIKALDVVIAENPTNADYWNVKGSLYEAQKNMDQAVEC 304
Cdd:TIGR02917 136 lgLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAA 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 305 FLKAIEISPNMPEALGNLGRI-----YFNQAIQRNNEISELSDN---AQYTKAKDEEVLPLFKKALPYYEKAHSLKPNED 376
Cdd:TIGR02917 216 YRKAIALRPNNIAVLLALATIlieagEFEEAEKHADALLKKAPNsplAHYLKALVDFQKKNYEDARETLQDALKSAPEYL 295
|
250
....*....|....*...
gi 1391517395 377 EYMVALRGIYYNLGDAEN 394
Cdd:TIGR02917 296 PALLLAGASEYQLGNLEQ 313
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
252-366 |
2.85e-09 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 58.85 E-value: 2.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 252 LKLINLYIYRSQFDDAIKALDVVIAENPTNADYWNVKGSLYEAQKNMDQAVECFLKAIEISPNMPEALGNLGRIYFNQAi 331
Cdd:COG3914 150 LNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQAC- 228
|
90 100 110
....*....|....*....|....*....|....*
gi 1391517395 332 qrnnEISELSDNAQYTKAKDEEVLPLFKKALPYYE 366
Cdd:COG3914 229 ----DWEVYDRFEELLAALARGPSELSPFALLYLP 259
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
253-329 |
3.78e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 55.35 E-value: 3.78e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1391517395 253 KLINLYIYRSQFDDAIKALDVVIAENPTNADYWNVKGSLYEAQKNMDQAVECFLKAIEISPNMPEALGNLGRIYFNQ 329
Cdd:COG5010 59 PSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSL 135
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
165-315 |
1.44e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 53.27 E-value: 1.44e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 165 QIRYNAAIAALQSGDHQLAIKALSDARNGGYNENDVYKFLVYEYEQTKDTVNLINTLKEGdqrfknemvevtdeqgnVSM 244
Cdd:COG4783 5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEA-----------------LEL 67
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1391517395 245 QKENTYILKLI-NLYIYRSQFDDAIKALDVVIAENPTNADYWNVKGSLYEAQKNMDQAVECFLKAIEISPNM 315
Cdd:COG4783 68 DPDEPEARLNLgLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
165-329 |
1.72e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 52.04 E-value: 1.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 165 QIRYNAAIAALQSGDHQLAIKALSDARNGGYNENDVYKFLVYEYEQTKDTVNLINTLKE------GDQRFKNEMVEVTDE 238
Cdd:COG2956 77 EALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERllklgpENAHAYCELAELYLE 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 239 QGNVSMQKEN------------TYILKLINLYIYRSQFDDAIKALDVVIAENPTNADYWNVKGSLYEAQKNMDQAVECFL 306
Cdd:COG2956 157 QGDYDEAIEAlekalkldpdcaRALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLR 236
|
170 180
....*....|....*....|...
gi 1391517395 307 KAIEISPNMPEALgNLGRIYFNQ 329
Cdd:COG2956 237 KALELDPSDDLLL-ALADLLERK 258
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
256-401 |
1.99e-07 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 51.45 E-value: 1.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 256 NLYIYRSQFDDAIKALDVVIAENPTNADYWNVKGSLYEAQKNMDQAVECFLKAIEISPNMPEALGNLGRIYFNQaiqrnn 335
Cdd:COG4785 81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYL------ 154
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1391517395 336 eiselsdnAQYTKAKDEevlplfkkalpyYEKAHSLKPNEDEYMVALRGIYYNLGDAENLKKIEAQ 401
Cdd:COG4785 155 --------GRYELAIAD------------LEKALELDPNDPERALWLYLAERKLDPEKALALLLED 200
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
252-392 |
2.77e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 52.78 E-value: 2.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 252 LKLINLYIYRSQFDDAIKALDVVIAENPTNADYWNVKGSLYEAQKNMDQAVECFLKAIEISPNMPEALGNLGRIyfnqAI 331
Cdd:TIGR02917 435 LLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARI----DI 510
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1391517395 332 QRNN---EISELSDNAQYTKAKDEEVLPLFK---------KALPYYEKAHSLKPNEDEYMVALRGIYYNLGDA 392
Cdd:TIGR02917 511 QEGNpddAIQRFEKVLTIDPKNLRAILALAGlylrtgneeEAVAWLEKAAELNPQEIEPALALAQYYLGKGQL 583
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
252-402 |
2.97e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 52.78 E-value: 2.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 252 LKLINLYIYRSQFDDAIKALDVVIAENPTNADYWNVKGSLYEAQKNMDQAVECFLKAIEISPNMPEALGNLGRIYfnqAI 331
Cdd:TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAY---AV 647
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1391517395 332 QRNNeiselsdnaqytkakdeevlplfKKALPYYEKAHSLKPNEDEYMVALRGIYYNLGDAENLKKIEAQM 402
Cdd:TIGR02917 648 MKNY-----------------------AKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
291-374 |
6.96e-07 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.09 E-value: 6.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 291 LYEAQKNMDQAVECFLKAIEISPNMPEALGNLGRIYFNQ-------AIQRNNEISELSDNAQYTKAKDEEVLPLFKKALP 363
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQgrydeaiALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|.
gi 1391517395 364 YYEKAHSLKPN 374
Cdd:COG3063 81 YLERALELDPS 91
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
250-314 |
7.24e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.00 E-value: 7.24e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1391517395 250 YILKLINLYIYRSQFDDAIKALDVVIAENPTNADYWNVKGSLYEAQKNMDQAVECFLKAIEISPN 314
Cdd:COG4235 53 ALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
252-316 |
8.17e-06 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 43.09 E-value: 8.17e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1391517395 252 LKLINLYIYRSQFDDAIKALDVVIAENPT---NADYWNVKGSLYEAQKNMDQAVECFLKAIEISPNMP 316
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFPEspdAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
291-401 |
2.72e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.18 E-value: 2.72e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 291 LYEAQKNMDQAVECFLKAIEISPNMPEALGNLGRIYFNQAiqrnneiselsdnaqytkakdeevlpLFKKALPYYEKAHS 370
Cdd:COG5010 63 LYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG--------------------------DKDEAKEYYEKALA 116
|
90 100 110
....*....|....*....|....*....|.
gi 1391517395 371 LKPNEDEYMVALRGIYYNLGDAENLKKIEAQ 401
Cdd:COG5010 117 LSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
282-393 |
6.21e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.49 E-value: 6.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 282 ADYWNVKGSLYEAQKNMDQAVECFLKAIEISPNMPEALGNLGRIYFN-----QAIQRNNEISELSDN---AQYTKAKDEE 353
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQlgdldEAIVLLHEALELDPDepeARLNLGLALL 83
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1391517395 354 VLPLFKKALPYYEKAHSLKPNEDEYMVALRGIYYNLGDAE 393
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPD 123
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
282-314 |
1.19e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.94 E-value: 1.19e-04
10 20 30
....*....|....*....|....*....|...
gi 1391517395 282 ADYWNVKGSLYEAQKNMDQAVECFLKAIEISPN 314
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
282-314 |
2.00e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 38.15 E-value: 2.00e-04
10 20 30
....*....|....*....|....*....|...
gi 1391517395 282 ADYWNVKGSLYEAQKNMDQAVECFLKAIEISPN 314
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
258-329 |
2.74e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 40.36 E-value: 2.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 258 YIYRSQFDDAIKALDVVIAENPT-----NADYWnvKGSLYEAQKNMDQAVECFLKAIEISPN---MPEALGNLGRIYFNQ 329
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNsplapDALYW--LGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLEL 80
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
282-315 |
3.12e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.81 E-value: 3.12e-04
10 20 30
....*....|....*....|....*....|....
gi 1391517395 282 ADYWNVKGSLYEAQKNMDQAVECFLKAIEISPNM 315
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| PRK12450 |
PRK12450 |
foldase protein PrsA; Reviewed |
53-286 |
5.22e-04 |
|
foldase protein PrsA; Reviewed
Pssm-ID: 138982 [Multi-domain] Cd Length: 309 Bit Score: 41.61 E-value: 5.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 53 NKFFELEMNKKIIGKEANEAeMYQALEKSTDLFNKALALDTLPNEKGKVKPRYLKDIRNNFKNNLDNYAnagiyyFNGKD 132
Cdd:PRK12450 65 SRVFETQYANKVSDKEVEKA-YKQTADQYGTSFKTVLAQSGLTPETYKKQIRLTKLVEYAVKEQAKNET------ISKKD 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 133 FKKAYDIWTDYVNiTKMPIMDKQEmPADSIVGQIRYNAAIAAlqsgdhqlaikALSDARNGGYNENDVYKFLVYEYEQTK 212
Cdd:PRK12450 138 YRQAYDAYTPTMT-AEIMQFEKEE-DAKAALEAVKAEGADFA-----------AIAKEKTIAADKKTTYTFDSGETTLPA 204
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1391517395 213 DTVNLINTLKEGDqrfKNEMVEVTDEqgnvSMQKENTYILKLINLYIYRSQFDDAIKAL-DVVIAENPTNADYWN 286
Cdd:PRK12450 205 EVVRAASGLKEGN---RSEIITALDP----ATSKRTYHIIKVTKKATKKADWKAYQKRLkDIIVTGKLKDPDFQN 272
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
254-326 |
6.25e-04 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 41.43 E-value: 6.25e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1391517395 254 LINLYIyRSQFDDAIKALDVV---IAENPTNADYWNVKGSLYEAQKNMDQAVECFLKAIEISPNmPEALGNLGRIY 326
Cdd:COG3071 228 LVRLYG-RLQGGDPAKQLKRAekwLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLL 301
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
277-374 |
6.43e-04 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 40.43 E-value: 6.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 277 ENPTNADY--WNVkGSLYEAQKNMDQAVECFLKAIEISPNMPEALGNLGRIYFNQAiqrnnEISElsdnaqyTKAKDEEV 354
Cdd:PRK02603 66 EDPNDRSYilYNM-GIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRG-----EKAE-------EAGDQDEA 132
|
90 100
....*....|....*....|
gi 1391517395 355 LPLFKKALPYYEKAHSLKPN 374
Cdd:PRK02603 133 EALFDKAAEYWKQAIRLAPN 152
|
|
| TPR_11 |
pfam13414 |
TPR repeat; |
289-329 |
8.33e-04 |
|
TPR repeat;
Pssm-ID: 315977 [Multi-domain] Cd Length: 42 Bit Score: 36.68 E-value: 8.33e-04
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 1391517395 289 GSLYEAQKNMDQAVECFLKAIEISPNMPEALGNLGRIYFNQ 329
Cdd:pfam13414 1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
208-336 |
2.19e-03 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 39.79 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 208 YEQTKDTVNLINTLKE----GDQRFKNEMVEVTDEQGNVSMQkentyilklinlyiyRSQFDDAIKALDVVIAENPTNAD 283
Cdd:PRK11788 151 YQQEKDWQKAIDVAERleklGGDSLRVEIAHFYCELAQQALA---------------RGDLDAARALLKKALAADPQCVR 215
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 1391517395 284 YWNVKGSLYEAQKNMDQAVECFLKAIEISPN-MPEALGNLGRIYfnQAIQRNNE 336
Cdd:PRK11788 216 ASILLGDLALAQGDYAAAIEALERVEEQDPEyLSEVLPKLMECY--QALGDEAE 267
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
300-393 |
2.25e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 38.06 E-value: 2.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1391517395 300 QAVECFLKAIEISPNMPEALGNLGRIYFNQaiqrNNeiselsdnaqytkakdeevlplFKKALPYYEKAHSLKPNEDEYM 379
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRL----GR----------------------YDEALAAYEKALRLDPDNADAL 54
|
90
....*....|....
gi 1391517395 380 VALRGIYYNLGDAE 393
Cdd:COG4235 55 LDLAEALLAAGDTE 68
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
300-374 |
3.14e-03 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 38.06 E-value: 3.14e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1391517395 300 QAVECFLKAIEISPNMPEALGNLGRIYF---NQAIQR-NNEISELsdnaqytkakdeevlpLFKKALPYYEKAHSLKPN 374
Cdd:CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICHyrgEQAIEQgDSEIAEA----------------WFDQAAEYWKQAIALAPG 152
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
282-314 |
4.65e-03 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 34.42 E-value: 4.65e-03
10 20 30
....*....|....*....|....*....|...
gi 1391517395 282 ADYWNVKGSLYEAQKNMDQAVECFLKAIEISPN 314
Cdd:pfam07719 1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
252-317 |
4.87e-03 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 37.91 E-value: 4.87e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1391517395 252 LKLINLYIYRSQFDDAIKALDVVIAEnPTNADYWNVKGSLYEAQKNMDQAVECFLKAIEISPNMPE 317
Cdd:COG2976 131 LRLARVLLAQKKYDEALATLDAVKPE-AFAALYAELRGDILLAQGDKAEARAAYQKALAALPEDAP 195
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
256-313 |
6.09e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 37.25 E-value: 6.09e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 1391517395 256 NLYIYRSQFDDAIKALDVVIAENPTNADYWNVKGSLYEAQKNMDQAVECFLKAIEISP 313
Cdd:COG5010 96 LLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
254-314 |
8.74e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 35.53 E-value: 8.74e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1391517395 254 LINLYIYRSQFDDAIkALDVVIAENPTNADYWNVKGSLYEAQKNMDQAVECFLKAIEISPN 314
Cdd:COG3063 32 LGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
|
|
| |
