|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15081 |
PRK15081 |
glutathione ABC transporter permease GsiC; Provisional |
1-306 |
0e+00 |
|
glutathione ABC transporter permease GsiC; Provisional
Pssm-ID: 185039 [Multi-domain] Cd Length: 306 Bit Score: 604.78 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 1 MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEADAQVIELVRQQLGLDQPLYHQFWHYISNAVQGDFGLS 80
Cdd:PRK15081 1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLAAGPEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 81 MVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELG 160
Cdd:PRK15081 81 MVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVELG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 161 WLPTVGADSWQHYILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG 240
Cdd:PRK15081 161 WLPTVGADSWQHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1392724488 241 FLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAINPAIRYK 306
Cdd:PRK15081 241 FLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIRYK 306
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
1-305 |
3.93e-147 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 415.62 E-value: 3.93e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 1 MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEADAQVIELVRQQLGLDQPLYHQFWHYISNAVQGDFGLS 80
Cdd:COG0601 1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 81 MVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELG 160
Cdd:COG0601 81 FVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 161 WLPTVGA--------DSWQHYILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVV 232
Cdd:COG0601 161 WLPVSGRvspwedflDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVV 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1392724488 233 TMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAINPAIRY 305
Cdd:COG0601 241 TVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRL 313
|
|
| nickel_nikB |
TIGR02789 |
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ... |
1-306 |
5.66e-90 |
|
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131836 [Multi-domain] Cd Length: 314 Bit Score: 270.48 E-value: 5.66e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 1 MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPA----RLIAGPEADaQVIELVRQQLGLDQPLYHQFWHYISNAVQGD 76
Cdd:TIGR02789 1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPAedylRLSHIPPTD-EAIADMRHSLGLDQPLYVQYFHWLWNALHLD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 77 FGLSMVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFS 156
Cdd:TIGR02789 80 FGISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 157 VELGWLPTVGADSWQHYILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMG 236
Cdd:TIGR02789 160 VYLNLLPTNGAGTWQHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITALG 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 237 LQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAINPAIRYK 306
Cdd:TIGR02789 240 MHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRIRRK 309
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
113-305 |
2.13e-30 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 113.16 E-value: 2.13e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 113 GMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFsvelgwlptvGADSWQHYILPSLTLGAAVAAVMARFT 192
Cdd:pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA----------ILSILGHGILPAIILALLGWAGYARLI 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 193 RASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYP 272
Cdd:pfam00528 71 RRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYP 150
|
170 180 190
....*....|....*....|....*....|...
gi 1392724488 273 VIQAEILLFSLEFILINLVVDVLYAAINPAIRY 305
Cdd:pfam00528 151 EIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
95-283 |
1.43e-20 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 86.95 E-value: 1.43e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 95 FMPTLWLTITSMVWAVIFGMAAGIIAAvWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELGWlptvgaDSWQHYI 174
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILA-RKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW------GILPGLG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 175 LPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFN 254
Cdd:cd06261 74 LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153
|
170 180 190
....*....|....*....|....*....|...
gi 1392724488 255 ----WPGLGRLLVDSVEMRDYPVIQAEILLFSL 283
Cdd:cd06261 154 geapGPGTGLLLIFAILFPGDLGVAAAVALILL 186
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK15081 |
PRK15081 |
glutathione ABC transporter permease GsiC; Provisional |
1-306 |
0e+00 |
|
glutathione ABC transporter permease GsiC; Provisional
Pssm-ID: 185039 [Multi-domain] Cd Length: 306 Bit Score: 604.78 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 1 MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEADAQVIELVRQQLGLDQPLYHQFWHYISNAVQGDFGLS 80
Cdd:PRK15081 1 MLNYVIKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLAAGPEADAQVVALVRQQLGLDQPLPHQFWHYISNALQGDFGTS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 81 MVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELG 160
Cdd:PRK15081 81 MVSRRPVSEEIASRFMPTLWLTITSMVWAVIFGMAIGIASAVWRNRWPDRLGMTLAVSGISFPAFALGMLLMQVFSVELG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 161 WLPTVGADSWQHYILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG 240
Cdd:PRK15081 161 WLPTVGADSWQHYILPSLTLGAAVAAVMARFTRASFVEVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFG 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1392724488 241 FLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAINPAIRYK 306
Cdd:PRK15081 241 FLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEVLLFSLEFILINLVVDVLYAAINPAIRYK 306
|
|
| DppB |
COG0601 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
1-305 |
3.93e-147 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440366 [Multi-domain] Cd Length: 314 Bit Score: 415.62 E-value: 3.93e-147
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 1 MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEADAQVIELVRQQLGLDQPLYHQFWHYISNAVQGDFGLS 80
Cdd:COG0601 1 MLRYILRRLLQAIPVLLGVSTLVFLLLRLLPGDPAAALLGPRATPEAIAALRAELGLDQPLLVQYLDWLGGLLRGDLGTS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 81 MVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELG 160
Cdd:COG0601 81 FVYGRPVSDLIAERLPVTLELALLALLLALLIGIPLGILAALRRGSWLDRLITVLALLGISIPSFWLGLLLILLFAVKLG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 161 WLPTVGA--------DSWQHYILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVV 232
Cdd:COG0601 161 WLPVSGRvspwedflDALRHLILPALTLALGSLAGIARLTRSSMLEVLGQDYVRTARAKGLSERRVLLRHALRNALIPVV 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1392724488 233 TMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAINPAIRY 305
Cdd:COG0601 241 TVLGLQLGGLLGGAVVVETVFSWPGLGRLLVDAILNRDYPVVQGIVLLIAVLVVLVNLLVDLLYALLDPRIRL 313
|
|
| nickel_nikB |
TIGR02789 |
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of ... |
1-306 |
5.66e-90 |
|
nickel ABC transporter, permease subunit NikB; This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131836 [Multi-domain] Cd Length: 314 Bit Score: 270.48 E-value: 5.66e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 1 MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPA----RLIAGPEADaQVIELVRQQLGLDQPLYHQFWHYISNAVQGD 76
Cdd:TIGR02789 1 MLNYILRRLLLLIPVVLAASLLAFILIHLGPSDPAedylRLSHIPPTD-EAIADMRHSLGLDQPLYVQYFHWLWNALHLD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 77 FGLSMVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFS 156
Cdd:TIGR02789 80 FGISYISDRPVLDEIARSLPATLELAGFALVIVVLVSVPLGILAARYRDRLPDHAVRFIIFLGVSIPNFWLAFLLVWGFS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 157 VELGWLPTVGADSWQHYILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMG 236
Cdd:TIGR02789 160 VYLNLLPTNGAGTWQHLVLPAVTLALMSVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRNAILPMITALG 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 237 LQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAINPAIRYK 306
Cdd:TIGR02789 240 MHIGELLGGTFVIENIFSWPGVGRYAISAIFNRDYPVIQCYTLLMGLLFVFCNLIVDLFQALLDPRIRRK 309
|
|
| PRK10914 |
PRK10914 |
dipeptide ABC transporter permease DppB; |
1-306 |
4.78e-87 |
|
dipeptide ABC transporter permease DppB;
Pssm-ID: 182834 [Multi-domain] Cd Length: 339 Bit Score: 263.98 E-value: 4.78e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 1 MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAG-----PEADAQVIElvrqQLGLDQPLYHQFWHYISNAVQG 75
Cdd:PRK10914 1 MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGergisPERHAQLLA----ELGLDKPMWQQYLHYIWGVMHG 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 76 DFGLSMVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVF 155
Cdd:PRK10914 77 DLGISLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 156 SVELGWLPTVG-------------------------------ADSWQHYILPSLTLGAAVAAVMARFTRASFVDVLSEDY 204
Cdd:PRK10914 157 SVHWNLTPVSGrvsdmvflddsnpltgfmlidtaiwgedgnfIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDY 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 205 MRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFSLE 284
Cdd:PRK10914 237 IRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATM 316
|
330 340
....*....|....*....|..
gi 1392724488 285 FILINLVVDVLYAAINPAIRYK 306
Cdd:PRK10914 317 IILVNLLVDLLYGVVNPRIRHK 338
|
|
| PRK10352 |
PRK10352 |
nickel transporter permease NikB; Provisional |
1-304 |
1.27e-85 |
|
nickel transporter permease NikB; Provisional
Pssm-ID: 182400 [Multi-domain] Cd Length: 314 Bit Score: 259.63 E-value: 1.27e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 1 MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPA----RLIAGPEADaQVIELVRQQLGLDQPLYHQFWHYISNAVQGD 76
Cdd:PRK10352 1 MLRYILRRLLLLIPMLLAASVIIFLMLRLGTGDPAldylRLSNLPPTP-EMLASTRTMLGLDQPLYVQYGTWLWKALHLD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 77 FGLSMVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFS 156
Cdd:PRK10352 80 FGISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFS 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 157 VELGWLPTVGADSWQHYILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMG 236
Cdd:PRK10352 160 VYLQWLPAMGYGGWQHIILPAVSIAFMSLAINARLLRASMLEVAGQRHVTWARLRGLSERQVERRHILRNASLPMITAVG 239
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1392724488 237 LQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAINPAIR 304
Cdd:PRK10352 240 MHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPVIQCFTLMMVVVFVVCNLIVDLLNAALDPRIR 307
|
|
| oppB |
PRK09471 |
oligopeptide ABC transporter permease OppB; |
1-305 |
1.31e-66 |
|
oligopeptide ABC transporter permease OppB;
Pssm-ID: 181886 [Multi-domain] Cd Length: 306 Bit Score: 210.69 E-value: 1.31e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 1 MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDParLIAGPEADAQVIELVRQQLGLDQPLYHQFWHYISNAVQGDFGLS 80
Cdd:PRK09471 1 MLKFILRRCLEAIPTLFILITISFFMMRLAPGSP--FTGERTLPPEVMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPS 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 81 MVSR-RPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVEL 159
Cdd:PRK09471 79 FKYKdYSVNDLVASSFPVSAKLGAAAFFLAVILGVSAGVIAALKQNTKWDYTVMGFAMTGVVIPSFVVAPLLVLIFAITL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 160 GWLPTVG--ADSWQHYILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGL 237
Cdd:PRK09471 159 HWLPGGGwnGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIILRHALKPALLPVLSYMGP 238
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1392724488 238 QFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAINPAIRY 305
Cdd:PRK09471 239 AFVGIITGSMVIETIFGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY 306
|
|
| PRK15110 |
PRK15110 |
peptide ABC transporter permease SapB; |
1-301 |
1.89e-48 |
|
peptide ABC transporter permease SapB;
Pssm-ID: 185065 [Multi-domain] Cd Length: 321 Bit Score: 164.09 E-value: 1.89e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 1 MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEAdaqvielvrqqlgldqplyhqFWHYISNAVQGDFGLS 80
Cdd:PRK15110 1 MIIFTLRRLLLLIVTLFLLTLVGFSLSYFTPHAPLQGASLWDA---------------------WVFWFNGLLHWDFGVS 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 81 MVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELG 160
Cdd:PRK15110 60 SINGQPISEQLKEVFPATMELCILAFGFALLVGIPVGIIAGVTRHKWQDNLISALALLGFSIPVFWLALLLTLFFSLTLG 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 161 WLPTVG----------------ADSW---------------QHYILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTAR 209
Cdd:PRK15110 140 WLPVSGrfdllyevkpvtgfalIDAWlsdspwrdemimsaiRHMILPVITLAVAPTTEVIRLMRISTIEVYDQNYVKAAA 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 210 AKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFSLEFILIN 289
Cdd:PRK15110 220 TRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAIRQQDYAAISAGVMVVGSLVIIVN 299
|
330
....*....|..
gi 1392724488 290 LVVDVLYAAINP 301
Cdd:PRK15110 300 VLSDILGAMANP 311
|
|
| YejB |
COG4174 |
ABC-type microcin C transport system, permease component YejB [Secondary metabolites ... |
1-305 |
1.17e-41 |
|
ABC-type microcin C transport system, permease component YejB [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443333 [Multi-domain] Cd Length: 363 Bit Score: 147.64 E-value: 1.17e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 1 MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDP-----ARL----------IAGPEA--------------------DA 45
Cdd:COG4174 1 MGAYILRRLLLMIPTLLGIMLINFVIVQFAPGGPveqviAQLqgtgggatgrISGGGGdagggaaagggskyrgarglDP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 46 QVIELVRQQLGLDQPLYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRfMPT-----LWLT-ITSMVwavifGMAAGII 119
Cdd:COG4174 81 EFIAELEKQYGFDKPAHERFLLMLKNYLRFDFGESYFRDISVIDLILEK-LPVsislgLWSTlLTYLI-----SIPLGIR 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 120 AAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFS------------------VELGWLPTVGADSWqHYILPSLTLG 181
Cdd:COG4174 155 KAVRDGSRFDVWTSTVIIVGYAIPGFLFAILLIVLFAggsyfdwfplrgltsdnwDQLSWWGKILDYLW-HLTLPVTAMV 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 182 AAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQF-GFLLGGSIVVEKVFNWPGLGR 260
Cdd:COG4174 234 IGGFATLTLLTKNSFLDEIRKQYVLTARAKGLSERRVLYGHVFRNAMLIVIAGFPAAFiGAFFTGSLLIETIFSLDGLGL 313
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1392724488 261 LLVDSVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAINPAIRY 305
Cdd:COG4174 314 LGFEAVVNRDYPVVFGTLYIFTLIGLVLKLISDLTYVLVDPRIDF 358
|
|
| PRK15133 |
PRK15133 |
microcin C ABC transporter permease YejB; Provisional |
1-306 |
2.82e-31 |
|
microcin C ABC transporter permease YejB; Provisional
Pssm-ID: 185087 [Multi-domain] Cd Length: 364 Bit Score: 119.85 E-value: 2.82e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 1 MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDP----------------------------ARLIAGPEADAQ------ 46
Cdd:PRK15133 1 MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPvdqaiaaiefgqagglpgaggegvrashAQTGVGNISDSNyrggrg 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 47 ----VIELVRQQLGLDQPLYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIAAV 122
Cdd:PRK15133 81 ldpeVIAEITHRYGFDKPLHERYFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 123 WRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFS--VELGWLPTVGADSWQ---------------HYILPSLTLGAAVA 185
Cdd:PRK15133 161 RNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAggSYFDLFPLRGLVSANfdslpwyqkitdylwHITLPVLATVIGGF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 186 AVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQF-GFLLGGSIVVEKVFNWPGLGRLLVD 264
Cdd:PRK15133 241 AALTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFiSMFFTGSLLIEVMFSLNGLGLLGYE 320
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 1392724488 265 SVEMRDYPVIQAEILLFSLEFILINLVVDVLYAAINPAIRYK 306
Cdd:PRK15133 321 ATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRIDFE 362
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
113-305 |
2.13e-30 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 113.16 E-value: 2.13e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 113 GMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFsvelgwlptvGADSWQHYILPSLTLGAAVAAVMARFT 192
Cdd:pfam00528 1 GIPLGIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIA----------ILSILGHGILPAIILALLGWAGYARLI 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 193 RASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYP 272
Cdd:pfam00528 71 RRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGLGLLLIEAILGYDYP 150
|
170 180 190
....*....|....*....|....*....|...
gi 1392724488 273 VIQAEILLFSLEFILINLVVDVLYAAINPAIRY 305
Cdd:pfam00528 151 EIQGPVLAAALILLLLNLLVDILQRLLDPRVRK 183
|
|
| BPD_transp_1_N |
pfam19300 |
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal ... |
1-102 |
1.71e-21 |
|
Binding-prot-dependent transport system membrane comp, N-term; This is the N-terminal transmembrane domain of the Binding-protein-dependent transport system inner membrane component.
Pssm-ID: 437132 [Multi-domain] Cd Length: 114 Bit Score: 87.28 E-value: 1.71e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 1 MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEADAQVIELVRQQLGLDQPLYHQFWHYISNAVQGD---- 76
Cdd:pfam19300 1 MLRFLVRRTLGAVVILLIISAVTFFLFYAIPRDPARLACGKNCTPETLALIRHNLGLDKPIPVQYWHFLSGIFAGRdfga 80
|
90 100 110
....*....|....*....|....*....|....
gi 1392724488 77 --------FGLSMVSRRPVADEIASRFMPTLWLT 102
Cdd:pfam19300 81 vghcpapcLGYSFANNEPVWDTIMDRFPTTLSLA 114
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
95-283 |
1.43e-20 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 86.95 E-value: 1.43e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 95 FMPTLWLTITSMVWAVIFGMAAGIIAAvWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELGWlptvgaDSWQHYI 174
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILA-RKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGW------GILPGLG 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 175 LPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFN 254
Cdd:cd06261 74 LPALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGG 153
|
170 180 190
....*....|....*....|....*....|...
gi 1392724488 255 ----WPGLGRLLVDSVEMRDYPVIQAEILLFSL 283
Cdd:cd06261 154 geapGPGTGLLLIFAILFPGDLGVAAAVALILL 186
|
|
| DppC |
COG1173 |
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ... |
98-241 |
8.41e-11 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440786 [Multi-domain] Cd Length: 275 Bit Score: 61.28 E-value: 8.41e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 98 TLWLTITSMVWAVIFGMAAGIIAAVWRnRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELGWLptvgadswqhyilpS 177
Cdd:COG1173 81 SLLVGLLAVLIALVIGVLLGLLAGYFG-GWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNV--------------I 145
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1392724488 178 LTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMGLQFGF 241
Cdd:COG1173 146 LALGLTGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVLPPLIVQATLGIAS 209
|
|
| PRK15021 |
PRK15021 |
microcin C ABC transporter permease; Provisional |
99-259 |
1.71e-04 |
|
microcin C ABC transporter permease; Provisional
Pssm-ID: 184982 [Multi-domain] Cd Length: 341 Bit Score: 42.66 E-value: 1.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 99 LWLTITSMVWAVIFGMAAGIIAA---VWRNRWPD------RLSMTIAVSGISFPAFALGMLLIQVFsvelGWLPTVGAds 169
Cdd:PRK15021 148 LMLTLCSSVMGVLAGALQGYYGGkvdLWGQRFIEvwsgmpTLFLIILLSSVVQPNFWWLLAITVLF----GWMSLVGV-- 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1392724488 170 wqhyilpsltlgaavaavmarfTRASFVDVLSEDYMRTARAKGVSETWVVLKHGLRNAMIPVVTMMglqfGFLLGGSIVV 249
Cdd:PRK15021 222 ----------------------VRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFL----PFILCSSITT 275
|
170
....*....|
gi 1392724488 250 EKVFNWPGLG 259
Cdd:PRK15021 276 LTSLDFLGFG 285
|
|
| |
