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Conserved domains on  [gi|1398711226|gb|PYA04549|]
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hypothetical protein DMW43_14960 [Serratia marcescens]

Protein Classification

lipoprotein( domain architecture ID 10009443)

lipoprotein similar to Pseudomonas aeruginosa lipopeptide LppL that contains a region that acts as an export signal

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YifL COG5567
Small periplasmic lipoprotein YifL (function unknown) [Function unknown];
1-41 1.43e-12

Small periplasmic lipoprotein YifL (function unknown) [Function unknown];


:

Pssm-ID: 444309  Cd Length: 43  Bit Score: 55.30  E-value: 1.43e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 1398711226  1 MKKQLRYALMAVLVTGLAGCGLKGPLYFPPADPASQKPAKP 41
Cdd:COG5567    1 MKKLLRLLLLLLLLFTLAGCGLKGPLYLPPAEKEKQPSQKQ 41
 
Name Accession Description Interval E-value
YifL COG5567
Small periplasmic lipoprotein YifL (function unknown) [Function unknown];
1-41 1.43e-12

Small periplasmic lipoprotein YifL (function unknown) [Function unknown];


Pssm-ID: 444309  Cd Length: 43  Bit Score: 55.30  E-value: 1.43e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 1398711226  1 MKKQLRYALMAVLVTGLAGCGLKGPLYFPPADPASQKPAKP 41
Cdd:COG5567    1 MKKLLRLLLLLLLLFTLAGCGLKGPLYLPPAEKEKQPSQKQ 41
LPAM_2 pfam13627
Prokaryotic lipoprotein-attachment site; In prokaryotes, membrane lipoproteins are synthesized ...
 8-29 3.55e-07

Prokaryotic lipoprotein-attachment site; In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.


Pssm-ID: 433360  Cd Length: 22  Bit Score: 41.60  E-value: 3.55e-07
                         10        20
                 ....*....|....*....|..
gi 1398711226  8 ALMAVLVTGLAGCGLKGPLYFP 29
Cdd:pfam13627  1 LLLLALLLLLAGCGQKGPLYLP 22
 
Name Accession Description Interval E-value
YifL COG5567
Small periplasmic lipoprotein YifL (function unknown) [Function unknown];
1-41 1.43e-12

Small periplasmic lipoprotein YifL (function unknown) [Function unknown];


Pssm-ID: 444309  Cd Length: 43  Bit Score: 55.30  E-value: 1.43e-12
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 1398711226  1 MKKQLRYALMAVLVTGLAGCGLKGPLYFPPADPASQKPAKP 41
Cdd:COG5567    1 MKKLLRLLLLLLLLFTLAGCGLKGPLYLPPAEKEKQPSQKQ 41
LPAM_2 pfam13627
Prokaryotic lipoprotein-attachment site; In prokaryotes, membrane lipoproteins are synthesized ...
 8-29 3.55e-07

Prokaryotic lipoprotein-attachment site; In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.


Pssm-ID: 433360  Cd Length: 22  Bit Score: 41.60  E-value: 3.55e-07
                         10        20
                 ....*....|....*....|..
gi 1398711226  8 ALMAVLVTGLAGCGLKGPLYFP 29
Cdd:pfam13627  1 LLLLALLLLLAGCGQKGPLYLP 22
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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