|
Name |
Accession |
Description |
Interval |
E-value |
| PhoH |
COG1702 |
Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]; ... |
51-249 |
7.55e-113 |
|
Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms];
Pssm-ID: 441308 [Multi-domain] Cd Length: 325 Bit Score: 327.02 E-value: 7.55e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405046368 51 KTIKAKSEGQQALMNAIDAKNLVLALGPAGTGKTYLAIAKAVEALESGRVGRIVLSRPAVEAGESIGFLPGDAEDKLAPY 130
Cdd:COG1702 109 KPIRPKTPGQKRYVDAIRKNDIVFGIGPAGTGKTYLAVAMAVAALKRGEVKRIILTRPAVEAGEKLGFLPGDLKEKVDPY 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405046368 131 LRPLYDALSDRLSMKRVRALMAEGAIEIAPVGFMRGRTLNNAFVVIDEAQNCTYVQIKMLLTRLGWHSTMVVTGDPNQSD 210
Cdd:COG1702 189 LRPLYDALYDMLGPEKVERLIERGVIEIAPLAYMRGRTLNDAFVILDEAQNTTPEQMKMFLTRLGFGSKMVITGDITQID 268
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1405046368 211 LLP-ELSGLAPVAAKLEEVSNIAVVRLGDRDIVRHPLVAE 249
Cdd:COG1702 269 LPRgQKSGLVEALEILKGVEGIAFVYFTSKDVVRHPLVQR 308
|
|
| PhoH |
pfam02562 |
PhoH-like protein; PhoH is a cytoplasmic protein and predicted ATPase that is induced by ... |
53-251 |
1.26e-103 |
|
PhoH-like protein; PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Pssm-ID: 460592 [Multi-domain] Cd Length: 204 Bit Score: 299.01 E-value: 1.26e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405046368 53 IKAKSEGQQALMNAIDAKNLVLALGPAGTGKTYLAIAKAVEALESGRVGRIVLSRPAVEAGESIGFLPGDAEDKLAPYLR 132
Cdd:pfam02562 1 IKPKTLGQKRYVEAIKKNDIVFGIGPAGTGKTYLAVAMAVDALKNGKVKRIILTRPAVEAGEKLGFLPGDLEEKVDPYLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405046368 133 PLYDALSDRLSMKRVRALMAEGAIEIAPVGFMRGRTLNNAFVVIDEAQNCTYVQIKMLLTRLGWHSTMVVTGDPNQSDLL 212
Cdd:pfam02562 81 PLYDALYDMLGAEKVEKLLERGVIEVAPLAYMRGRTLNDAFIILDEAQNTTPEQMKMFLTRLGFNSKMVVTGDPTQIDLP 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1405046368 213 P-ELSGLAPVAAKLEEVSNIAVVRLGDRDIVRHPLVAEML 251
Cdd:pfam02562 161 KgQKSGLVEALEILKGVEGIGFIDFTLKDVVRHPLVQRIV 200
|
|
| PRK10536 |
PRK10536 |
phosphate starvation-inducible protein PhoH; |
2-246 |
7.59e-63 |
|
phosphate starvation-inducible protein PhoH;
Pssm-ID: 182529 Cd Length: 262 Bit Score: 197.70 E-value: 7.59e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405046368 2 SKRALKRQVREGAFDAGQFQgDDKIRRLPVDRGWSPLAHHNDDREQSyvkTIKAKSEGQQALMNAIDAKNLVLALGPAGT 81
Cdd:PRK10536 10 ARREAKRVLRRDSRSHKQRE-EESVTSLVQMGGVEAIGMARDSRDTS---PILARNEAQAHYLKAIESKQLIFATGEAGC 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405046368 82 GKTYLAIAKAVEALESGRVGRIVLSRPAVEAGESIGFLPGDAEDKLAPYLRPLYDALSDRLSMKRVR-ALMAE-GAIEIA 159
Cdd:PRK10536 86 GKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQyCLRPEiGKVEIA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405046368 160 PVGFMRGRTLNNAFVVIDEAQNCTYVQIKMLLTRLGWHSTMVVTGDPNQSDlLPE--LSGLAPVAAKLEEVSNIAVVRLG 237
Cdd:PRK10536 166 PFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCD-LPRgvKSGLSDALERFEEDEMVGIVRFG 244
|
....*....
gi 1405046368 238 DRDIVRHPL 246
Cdd:PRK10536 245 KEDCVRSAL 253
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
69-99 |
9.79e-05 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 42.46 E-value: 9.79e-05
10 20 30
....*....|....*....|....*....|.
gi 1405046368 69 AKNLVLaLGPAGTGKTYLAIAKAVEALESGR 99
Cdd:NF038214 90 AENVLL-LGPPGTGKTHLAIALGYAACRQGY 119
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
59-117 |
9.03e-04 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 38.69 E-value: 9.03e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1405046368 59 GQQALMNAIDAKNLVLALGPAGTGKTYLaIAKAVEALESGRvGRIVLSRP----AVEAGESIG 117
Cdd:cd17933 1 EQKAAVRLVLRNRVSVLTGGAGTGKTTT-LKALLAALEAEG-KRVVLAAPtgkaAKRLSESTG 61
|
|
| DEXDc |
smart00487 |
DEAD-like helicases superfamily; |
60-194 |
2.60e-03 |
|
DEAD-like helicases superfamily;
Pssm-ID: 214692 [Multi-domain] Cd Length: 201 Bit Score: 37.86 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405046368 60 QQALMNAI--DAKNLVLAlGPAGTGKTYLAIAKAVEALESGRVGRIVLSRPAVEAGESIgflpGDAEDKLAPYLRPLYDA 137
Cdd:smart00487 13 QKEAIEALlsGLRDVILA-APTGSGKTLAALLPALEALKRGKGGRVLVLVPTRELAEQW----AEELKKLGPSLGLKVVG 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405046368 138 LSDRLSMKRVRALMAEGAIEI--APVGFMRGRTLNNA-------FVVIDEAQ----NCTYVQIKMLLTRL 194
Cdd:smart00487 88 LYGGDSKREQLRKLESGKTDIlvTTPGRLLDLLENDKlslsnvdLVILDEAHrlldGGFGDQLEKLLKLL 157
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PhoH |
COG1702 |
Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]; ... |
51-249 |
7.55e-113 |
|
Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms];
Pssm-ID: 441308 [Multi-domain] Cd Length: 325 Bit Score: 327.02 E-value: 7.55e-113
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405046368 51 KTIKAKSEGQQALMNAIDAKNLVLALGPAGTGKTYLAIAKAVEALESGRVGRIVLSRPAVEAGESIGFLPGDAEDKLAPY 130
Cdd:COG1702 109 KPIRPKTPGQKRYVDAIRKNDIVFGIGPAGTGKTYLAVAMAVAALKRGEVKRIILTRPAVEAGEKLGFLPGDLKEKVDPY 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405046368 131 LRPLYDALSDRLSMKRVRALMAEGAIEIAPVGFMRGRTLNNAFVVIDEAQNCTYVQIKMLLTRLGWHSTMVVTGDPNQSD 210
Cdd:COG1702 189 LRPLYDALYDMLGPEKVERLIERGVIEIAPLAYMRGRTLNDAFVILDEAQNTTPEQMKMFLTRLGFGSKMVITGDITQID 268
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1405046368 211 LLP-ELSGLAPVAAKLEEVSNIAVVRLGDRDIVRHPLVAE 249
Cdd:COG1702 269 LPRgQKSGLVEALEILKGVEGIAFVYFTSKDVVRHPLVQR 308
|
|
| PhoH |
pfam02562 |
PhoH-like protein; PhoH is a cytoplasmic protein and predicted ATPase that is induced by ... |
53-251 |
1.26e-103 |
|
PhoH-like protein; PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.
Pssm-ID: 460592 [Multi-domain] Cd Length: 204 Bit Score: 299.01 E-value: 1.26e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405046368 53 IKAKSEGQQALMNAIDAKNLVLALGPAGTGKTYLAIAKAVEALESGRVGRIVLSRPAVEAGESIGFLPGDAEDKLAPYLR 132
Cdd:pfam02562 1 IKPKTLGQKRYVEAIKKNDIVFGIGPAGTGKTYLAVAMAVDALKNGKVKRIILTRPAVEAGEKLGFLPGDLEEKVDPYLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405046368 133 PLYDALSDRLSMKRVRALMAEGAIEIAPVGFMRGRTLNNAFVVIDEAQNCTYVQIKMLLTRLGWHSTMVVTGDPNQSDLL 212
Cdd:pfam02562 81 PLYDALYDMLGAEKVEKLLERGVIEVAPLAYMRGRTLNDAFIILDEAQNTTPEQMKMFLTRLGFNSKMVVTGDPTQIDLP 160
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 1405046368 213 P-ELSGLAPVAAKLEEVSNIAVVRLGDRDIVRHPLVAEML 251
Cdd:pfam02562 161 KgQKSGLVEALEILKGVEGIGFIDFTLKDVVRHPLVQRIV 200
|
|
| PRK10536 |
PRK10536 |
phosphate starvation-inducible protein PhoH; |
2-246 |
7.59e-63 |
|
phosphate starvation-inducible protein PhoH;
Pssm-ID: 182529 Cd Length: 262 Bit Score: 197.70 E-value: 7.59e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405046368 2 SKRALKRQVREGAFDAGQFQgDDKIRRLPVDRGWSPLAHHNDDREQSyvkTIKAKSEGQQALMNAIDAKNLVLALGPAGT 81
Cdd:PRK10536 10 ARREAKRVLRRDSRSHKQRE-EESVTSLVQMGGVEAIGMARDSRDTS---PILARNEAQAHYLKAIESKQLIFATGEAGC 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405046368 82 GKTYLAIAKAVEALESGRVGRIVLSRPAVEAGESIGFLPGDAEDKLAPYLRPLYDALSDRLSMKRVR-ALMAE-GAIEIA 159
Cdd:PRK10536 86 GKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQyCLRPEiGKVEIA 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405046368 160 PVGFMRGRTLNNAFVVIDEAQNCTYVQIKMLLTRLGWHSTMVVTGDPNQSDlLPE--LSGLAPVAAKLEEVSNIAVVRLG 237
Cdd:PRK10536 166 PFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCD-LPRgvKSGLSDALERFEEDEMVGIVRFG 244
|
....*....
gi 1405046368 238 DRDIVRHPL 246
Cdd:PRK10536 245 KEDCVRSAL 253
|
|
| YlaK |
COG1875 |
Predicted ribonuclease YlaK, contains NYN-type RNase and PhoH-family ATPase domains [General ... |
53-225 |
2.20e-50 |
|
Predicted ribonuclease YlaK, contains NYN-type RNase and PhoH-family ATPase domains [General function prediction only];
Pssm-ID: 441479 [Multi-domain] Cd Length: 441 Bit Score: 170.65 E-value: 2.20e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405046368 53 IKAKSEGQQALMNA-----IDaknLVLALGPAGTGKTYLAIAKAVEA-LESGRVGRIVLSRPAVEAGESIGFLPGDAEDK 126
Cdd:COG1875 228 IKPRNREQRFALDLlldpdID---LVTLLGKAGTGKTLLALAAGLEQvLEEKRYRKIIVTRPTVPVGEDIGFLPGTEEEK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405046368 127 LAPYLRPLYDAL-----SDRLSMKRVRA---LMAEGAIEIAPVGFMRGRTLNNAFVVIDEAQNCTYVQIKMLLTRLGWHS 198
Cdd:COG1875 305 MAPWMQAIYDNLeflvsSDEKKGEWGRSideLLDRGRIEIESLTFIRGRSLPNQFVIIDEAQNLTPHQVKTIITRAGEGT 384
|
170 180 190
....*....|....*....|....*....|
gi 1405046368 199 TMVVTGDPNQSD---LLPELSGLAPVAAKL 225
Cdd:COG1875 385 KIVLTGDPAQIDnpyLDEHSNGLTYVVERF 414
|
|
| DnaC |
COG1484 |
DNA replication protein DnaC [Replication, recombination and repair]; |
68-98 |
3.09e-05 |
|
DNA replication protein DnaC [Replication, recombination and repair];
Pssm-ID: 441093 [Multi-domain] Cd Length: 242 Bit Score: 44.00 E-value: 3.09e-05
10 20 30
....*....|....*....|....*....|.
gi 1405046368 68 DAKNLVLaLGPAGTGKTYLAIAKAVEALESG 98
Cdd:COG1484 98 RGENLIL-LGPPGTGKTHLAIALGHEACRAG 127
|
|
| Zot |
COG4128 |
Zona occludens toxin, predicted ATPase [General function prediction only]; |
77-181 |
7.38e-05 |
|
Zona occludens toxin, predicted ATPase [General function prediction only];
Pssm-ID: 443304 [Multi-domain] Cd Length: 276 Bit Score: 43.16 E-value: 7.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405046368 77 GPAGTGKTYLAIAK-AVEALESGRvgRIVLSRPAVEAGESIGFLPGDAEDKLAPYLRPLYDALSDRLSMKRVRALmaega 155
Cdd:COG4128 8 GVPGSGKSYEAVWFlIIPALKKGR--RVITNIPGLKILERIAEHLGLAVPDTAELINVDTDDPDGLEKMARWFHW----- 80
|
90 100
....*....|....*....|....*.
gi 1405046368 156 ieiAPVGfmrgrtlnnAFVVIDEAQN 181
Cdd:COG4128 81 ---APDG---------ALIVIDEAQR 94
|
|
| IS21_help_AAA |
NF038214 |
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ... |
69-99 |
9.79e-05 |
|
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.
Pssm-ID: 439516 Cd Length: 232 Bit Score: 42.46 E-value: 9.79e-05
10 20 30
....*....|....*....|....*....|.
gi 1405046368 69 AKNLVLaLGPAGTGKTYLAIAKAVEALESGR 99
Cdd:NF038214 90 AENVLL-LGPPGTGKTHLAIALGYAACRQGY 119
|
|
| IstB_IS21 |
pfam01695 |
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ... |
68-133 |
4.03e-04 |
|
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Pssm-ID: 426385 [Multi-domain] Cd Length: 238 Bit Score: 40.51 E-value: 4.03e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1405046368 68 DAKNLVLaLGPAGTGKTYLAIAKAVEALESG------RVGRIVLSRPAVEAgesigflPGDAEDKLAPYLRP 133
Cdd:pfam01695 91 RAQNVVL-LGPPGVGKTHLAIALGVEACRAGysvrftSAADLVNQLKRAHG-------DGKLTRKLQQLLKP 154
|
|
| McrB |
COG1401 |
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB ... |
70-138 |
4.63e-04 |
|
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB [Defense mechanisms];
Pssm-ID: 441011 [Multi-domain] Cd Length: 477 Bit Score: 40.91 E-value: 4.63e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1405046368 70 KNLVLAlGPAGTGKTYLA--IAKAVEALESGRVgRIVLSRPA------VEagesiGFLPGDAEDKLAPYLRPLYDAL 138
Cdd:COG1401 222 KNVILA-GPPGTGKTYLArrLAEALGGEDNGRI-EFVQFHPSwsyedfLL-----GYRPSLDEGKYEPTPGIFLRFC 291
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
59-117 |
9.03e-04 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 38.69 E-value: 9.03e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1405046368 59 GQQALMNAIDAKNLVLALGPAGTGKTYLaIAKAVEALESGRvGRIVLSRP----AVEAGESIG 117
Cdd:cd17933 1 EQKAAVRLVLRNRVSVLTGGAGTGKTTT-LKALLAALEAEG-KRVVLAAPtgkaAKRLSESTG 61
|
|
| HelD |
COG3973 |
DNA helicase IV [Replication, recombination and repair]; |
133-209 |
9.57e-04 |
|
DNA helicase IV [Replication, recombination and repair];
Pssm-ID: 443173 [Multi-domain] Cd Length: 699 Bit Score: 40.23 E-value: 9.57e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1405046368 133 PLYDALSDRLSmkrvralmaegaieiapvGFMRGRTLnnAFVVIDEAQNCTYVQIKMLLtRLGWHSTMVVTGDPNQS 209
Cdd:COG3973 452 ALLDELAELLG------------------GPDRTWTY--GHVVVDEAQDLSPMQWRVLK-RRFPSASFTIVGDLAQA 507
|
|
| PRK09183 |
PRK09183 |
transposase/IS protein; Provisional |
69-98 |
1.37e-03 |
|
transposase/IS protein; Provisional
Pssm-ID: 181681 Cd Length: 259 Bit Score: 39.30 E-value: 1.37e-03
10 20 30
....*....|....*....|....*....|
gi 1405046368 69 AKNLVLaLGPAGTGKTYLAIAKAVEALESG 98
Cdd:PRK09183 102 NENIVL-LGPSGVGKTHLAIALGYEAVRAG 130
|
|
| DEXDc |
smart00487 |
DEAD-like helicases superfamily; |
60-194 |
2.60e-03 |
|
DEAD-like helicases superfamily;
Pssm-ID: 214692 [Multi-domain] Cd Length: 201 Bit Score: 37.86 E-value: 2.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405046368 60 QQALMNAI--DAKNLVLAlGPAGTGKTYLAIAKAVEALESGRVGRIVLSRPAVEAGESIgflpGDAEDKLAPYLRPLYDA 137
Cdd:smart00487 13 QKEAIEALlsGLRDVILA-APTGSGKTLAALLPALEALKRGKGGRVLVLVPTRELAEQW----AEELKKLGPSLGLKVVG 87
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1405046368 138 LSDRLSMKRVRALMAEGAIEI--APVGFMRGRTLNNA-------FVVIDEAQ----NCTYVQIKMLLTRL 194
Cdd:smart00487 88 LYGGDSKREQLRKLESGKTDIlvTTPGRLLDLLENDKlslsnvdLVILDEAHrlldGGFGDQLEKLLKLL 157
|
|
| COG3972 |
COG3972 |
Superfamily I DNA and RNA helicases [Replication, recombination and repair]; |
41-94 |
4.34e-03 |
|
Superfamily I DNA and RNA helicases [Replication, recombination and repair];
Pssm-ID: 443172 [Multi-domain] Cd Length: 565 Bit Score: 38.27 E-value: 4.34e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 1405046368 41 HNDDREQSYVKTIKAKSEGQQALMNAIDAKNLVLAlGPAGTGKTYLAIAKAVEA 94
Cdd:COG3972 145 NLVSLEDFFLPLIAVLDLQQERIARSIPDGPQRIR-GVAGSGKTVLLAAKAAYL 197
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
57-118 |
6.31e-03 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 37.65 E-value: 6.31e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1405046368 57 SEGQQ-ALMNAIDAKNLVLALGPAGTGKTYLaIAKAVEALESGRvGRIVLSRP----AVEAGESIGF 118
Cdd:COG0507 126 SDEQReAVALALTTRRVSVLTGGAGTGKTTT-LRALLAALEALG-LRVALAAPtgkaAKRLSESTGI 190
|
|
| AAA_30 |
pfam13604 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
57-118 |
8.56e-03 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. There is a Walker A and Walker B.
Pssm-ID: 433343 [Multi-domain] Cd Length: 191 Bit Score: 36.39 E-value: 8.56e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1405046368 57 SEGQQALMNAI--DAKNLVLALGPAGTGKTYlAIAKAVEALESGrvGRIVL-----SRPAVEAGESIGF 118
Cdd:pfam13604 3 NAEQAAAVRALltSGDRVAVLVGPAGTGKTT-ALKALREAWEAA--GYRVIglaptGRAAKVLGEELGI 68
|
|
| |
