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Conserved domains on  [gi|341941225|sp|Q08642|]
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RecName: Full=Protein-arginine deiminase type-2; AltName: Full=Peptidylarginine deiminase II; AltName: Full=Protein-arginine deiminase type II

Protein Classification

protein-arginine deiminase domain-containing protein( domain architecture ID 10553850)

protein-arginine deiminase (PAD) domain-containing protein may catalyze the conversion of protein-bound arginine residues to citrulline residues in a calcium ion-dependent manner

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PAD pfam03068
Protein-arginine deiminase (PAD); Members of this family are found in mammals. In the presence ...
292-670 0e+00

Protein-arginine deiminase (PAD); Members of this family are found in mammals. In the presence of calcium ions, PAD enzymes EC:3.5.3.15 catalyze the post-translational modification reaction responsible for the formation of citrulline residues: Protein L-arginine + H2O <=> Protein L-citrulline + NH3. Several types are recognized (and included in the family) on the basis of molecular mass, substrate specificity, and tissue localization. The expression of type I PAD is known to be under the control of oestrogen.


:

Pssm-ID: 460794  Cd Length: 393  Bit Score: 680.10  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941225  292 PIFTDTVMFRIAPWIMTPNILPPVSVFVCCMKDN--YLFLKEVKNLVEKTNCELKVCFQYMNRGDRWIQDEIEFGYIEAP 369
Cdd:pfam03068   1 PIFSDTVVFRVAPWIMTPNTQPPEEVYVCRGKENsqQGFVKELTDLVKKAGIQLPVCPFNENRGDRWMQDEMEFGYTQAP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941225  370 HKGFPVVLDSPRDGNLKDFPIKQLLGPDFGYVTREPLFETVTSLDSFGNLEVSPPVTVNGKEYPLGRILIGSS-FPLSGG 448
Cdd:pfam03068  81 GKGLPVVLDSPRGRGLEDFPFKQLLGPDFGYVTRETDGFGVSELDSFGNLEVSPPVTVGGKEYPLGRILIGSSsYPSEGG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941225  449 RRMTKVVRDFLQAQQVQAPVELYSDWLTVGHVDEFMTFIPIPGKKEFRLLMASTSACYQLFREKQKAGHGEAVMFKGLG- 527
Cdd:pfam03068 161 RRMTKVLRDFLAAQQVQPPVELFSDWLTVGHVDEFVQFVPADNKKGFRLLLASPRACYKLLEKLQEEGHGEALLFSGNGd 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941225  528 ----GMSSKRITINKILSNESLTQENQYFQRCLDWNRDILKRELALTEKDIIDLPALFKMD------ENHQARAFFPNMV 597
Cdd:pfam03068 241 tlhaNGREANTTINELLADESLIQQNLYVQKCIDWNRDILKRELGLTEDDIIDIPALFKLEltngpcKLLRAEAFFPNMV 320
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 341941225  598 NMIVLDKDLGIPKPFGPQVEEECCLETHVRGLLEPLGLACTFIDDISAYHKFLGEVHCGTNVRRKPFTFKWWH 670
Cdd:pfam03068 321 NMVVLGKYLGIPKPFGPIINGRCCLEEAVRSLLEPLGLNCTFIDDFYSYHVLGGEVHCGTNTRRKPFAFKWWE 393
PAD_M pfam08527
Protein-arginine deiminase (PAD) middle domain; This family represents the central ...
124-282 1.89e-100

Protein-arginine deiminase (PAD) middle domain; This family represents the central non-catalytic domain of protein-arginine deiminase. This domain has an immunoglobulin-like fold.


:

Pssm-ID: 462510  Cd Length: 159  Bit Score: 304.04  E-value: 1.89e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941225  124 IEISLDVDADRDGEVEKNNPKKASWTWGPEGQGAILLVNCDRDTPWLPKEDCSDEKVYSKQDLQDMSQMILRTKGPDRLP 203
Cdd:pfam08527   1 VEISLDVDADRDGVVEKNNPDKGSWTWGPNGQGAILLVNCDRDNPGSQKPDCEDSKVFSLEDLKDMSLMVLRTQGPSKLF 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 341941225  204 AGYEIVLYISMSDSDKVGVFYVENPFFGQRYIHILGRQKLYHVVKYTGGSAELLFFVEGLCFPDESFSGLVSIHVSLLE 282
Cdd:pfam08527  81 DGYKLVLHVSKSDADKVRVFHAQGGDSGSRYKLVLGPGKLSYVVEYLGGQAEITFYVEGLAFPDADFSGLVSISVSLLE 159
PAD_N pfam08526
Protein-arginine deiminase (PAD) N-terminal domain; This family represents the N-terminal ...
9-122 7.07e-45

Protein-arginine deiminase (PAD) N-terminal domain; This family represents the N-terminal non-catalytic domain of protein-arginine deiminase. This domain has a cupredoxin-like fold.


:

Pssm-ID: 462509  Cd Length: 113  Bit Score: 155.80  E-value: 7.07e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941225    9 MLRERTVRLQYGSRVEAVYVLGTQLWTDVYSAAPAGAKTFSLKHSEGVKVEVVRDGEAEEvVTNGKQRWALSPSSTLRLS 88
Cdd:pfam08526   1 MAFQRTVRLSLDSPTHAVCVLGTETLVDVYRSAPKGCKSFSVKGSPGVLVDIAPSVPRTT-EPSGTSRWPLDPNTDVLVS 79
                          90       100       110
                  ....*....|....*....|....*....|....
gi 341941225   89 MAQASTEASSDKVTVNYYEEEGSAPIDQAGLFLT 122
Cdd:pfam08526  80 MDSASSEVNDDKVSVSYYGPDEEAPLGTAVLYLT 113
 
Name Accession Description Interval E-value
PAD pfam03068
Protein-arginine deiminase (PAD); Members of this family are found in mammals. In the presence ...
292-670 0e+00

Protein-arginine deiminase (PAD); Members of this family are found in mammals. In the presence of calcium ions, PAD enzymes EC:3.5.3.15 catalyze the post-translational modification reaction responsible for the formation of citrulline residues: Protein L-arginine + H2O <=> Protein L-citrulline + NH3. Several types are recognized (and included in the family) on the basis of molecular mass, substrate specificity, and tissue localization. The expression of type I PAD is known to be under the control of oestrogen.


Pssm-ID: 460794  Cd Length: 393  Bit Score: 680.10  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941225  292 PIFTDTVMFRIAPWIMTPNILPPVSVFVCCMKDN--YLFLKEVKNLVEKTNCELKVCFQYMNRGDRWIQDEIEFGYIEAP 369
Cdd:pfam03068   1 PIFSDTVVFRVAPWIMTPNTQPPEEVYVCRGKENsqQGFVKELTDLVKKAGIQLPVCPFNENRGDRWMQDEMEFGYTQAP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941225  370 HKGFPVVLDSPRDGNLKDFPIKQLLGPDFGYVTREPLFETVTSLDSFGNLEVSPPVTVNGKEYPLGRILIGSS-FPLSGG 448
Cdd:pfam03068  81 GKGLPVVLDSPRGRGLEDFPFKQLLGPDFGYVTRETDGFGVSELDSFGNLEVSPPVTVGGKEYPLGRILIGSSsYPSEGG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941225  449 RRMTKVVRDFLQAQQVQAPVELYSDWLTVGHVDEFMTFIPIPGKKEFRLLMASTSACYQLFREKQKAGHGEAVMFKGLG- 527
Cdd:pfam03068 161 RRMTKVLRDFLAAQQVQPPVELFSDWLTVGHVDEFVQFVPADNKKGFRLLLASPRACYKLLEKLQEEGHGEALLFSGNGd 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941225  528 ----GMSSKRITINKILSNESLTQENQYFQRCLDWNRDILKRELALTEKDIIDLPALFKMD------ENHQARAFFPNMV 597
Cdd:pfam03068 241 tlhaNGREANTTINELLADESLIQQNLYVQKCIDWNRDILKRELGLTEDDIIDIPALFKLEltngpcKLLRAEAFFPNMV 320
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 341941225  598 NMIVLDKDLGIPKPFGPQVEEECCLETHVRGLLEPLGLACTFIDDISAYHKFLGEVHCGTNVRRKPFTFKWWH 670
Cdd:pfam03068 321 NMVVLGKYLGIPKPFGPIINGRCCLEEAVRSLLEPLGLNCTFIDDFYSYHVLGGEVHCGTNTRRKPFAFKWWE 393
PAD_M pfam08527
Protein-arginine deiminase (PAD) middle domain; This family represents the central ...
124-282 1.89e-100

Protein-arginine deiminase (PAD) middle domain; This family represents the central non-catalytic domain of protein-arginine deiminase. This domain has an immunoglobulin-like fold.


Pssm-ID: 462510  Cd Length: 159  Bit Score: 304.04  E-value: 1.89e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941225  124 IEISLDVDADRDGEVEKNNPKKASWTWGPEGQGAILLVNCDRDTPWLPKEDCSDEKVYSKQDLQDMSQMILRTKGPDRLP 203
Cdd:pfam08527   1 VEISLDVDADRDGVVEKNNPDKGSWTWGPNGQGAILLVNCDRDNPGSQKPDCEDSKVFSLEDLKDMSLMVLRTQGPSKLF 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 341941225  204 AGYEIVLYISMSDSDKVGVFYVENPFFGQRYIHILGRQKLYHVVKYTGGSAELLFFVEGLCFPDESFSGLVSIHVSLLE 282
Cdd:pfam08527  81 DGYKLVLHVSKSDADKVRVFHAQGGDSGSRYKLVLGPGKLSYVVEYLGGQAEITFYVEGLAFPDADFSGLVSISVSLLE 159
PAD_N pfam08526
Protein-arginine deiminase (PAD) N-terminal domain; This family represents the N-terminal ...
9-122 7.07e-45

Protein-arginine deiminase (PAD) N-terminal domain; This family represents the N-terminal non-catalytic domain of protein-arginine deiminase. This domain has a cupredoxin-like fold.


Pssm-ID: 462509  Cd Length: 113  Bit Score: 155.80  E-value: 7.07e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941225    9 MLRERTVRLQYGSRVEAVYVLGTQLWTDVYSAAPAGAKTFSLKHSEGVKVEVVRDGEAEEvVTNGKQRWALSPSSTLRLS 88
Cdd:pfam08526   1 MAFQRTVRLSLDSPTHAVCVLGTETLVDVYRSAPKGCKSFSVKGSPGVLVDIAPSVPRTT-EPSGTSRWPLDPNTDVLVS 79
                          90       100       110
                  ....*....|....*....|....*....|....
gi 341941225   89 MAQASTEASSDKVTVNYYEEEGSAPIDQAGLFLT 122
Cdd:pfam08526  80 MDSASSEVNDDKVSVSYYGPDEEAPLGTAVLYLT 113
PAD_N cd04214
N-terminal non-catalytic domain of protein-arginine deiminase; The N-terminal non-catalytic ...
15-123 2.30e-36

N-terminal non-catalytic domain of protein-arginine deiminase; The N-terminal non-catalytic domain of protein-arginine deiminase has a cupredoxin-like fold, but lacks the Cu binding site. PAD (protein-arginine deiminase) and protein L-arginine iminohydrolase catalyze the conversion of protein arginine residues to citrulline residues post-translationally in a process called citrullination. The modification plays crucial regulatory roles in development and cell differentiation.


Pssm-ID: 259876  Cd Length: 108  Bit Score: 132.12  E-value: 2.30e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941225  15 VRLQYGSRVEAVYVLGTQLWTDVYSAAPAGAKTFSLKHSEGVKVEVVRDGEAEEVVTnGKQRWALSPSSTLRLSMAQAST 94
Cdd:cd04214    1 LRLDTGSRTHAVCVLGTETTLDIYGSAPAGATSFSVKASPGVVVDVAHSPPAKKEPT-GLWPWPLDTDVEVTMTMKAASK 79
                         90       100
                 ....*....|....*....|....*....
gi 341941225  95 EASSDKVTVNYYEEEGSAPIDQAGLFLTA 123
Cdd:cd04214   80 EVNDSKVRVSYYGPKEDAPLGKAVLYLTG 108
 
Name Accession Description Interval E-value
PAD pfam03068
Protein-arginine deiminase (PAD); Members of this family are found in mammals. In the presence ...
292-670 0e+00

Protein-arginine deiminase (PAD); Members of this family are found in mammals. In the presence of calcium ions, PAD enzymes EC:3.5.3.15 catalyze the post-translational modification reaction responsible for the formation of citrulline residues: Protein L-arginine + H2O <=> Protein L-citrulline + NH3. Several types are recognized (and included in the family) on the basis of molecular mass, substrate specificity, and tissue localization. The expression of type I PAD is known to be under the control of oestrogen.


Pssm-ID: 460794  Cd Length: 393  Bit Score: 680.10  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941225  292 PIFTDTVMFRIAPWIMTPNILPPVSVFVCCMKDN--YLFLKEVKNLVEKTNCELKVCFQYMNRGDRWIQDEIEFGYIEAP 369
Cdd:pfam03068   1 PIFSDTVVFRVAPWIMTPNTQPPEEVYVCRGKENsqQGFVKELTDLVKKAGIQLPVCPFNENRGDRWMQDEMEFGYTQAP 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941225  370 HKGFPVVLDSPRDGNLKDFPIKQLLGPDFGYVTREPLFETVTSLDSFGNLEVSPPVTVNGKEYPLGRILIGSS-FPLSGG 448
Cdd:pfam03068  81 GKGLPVVLDSPRGRGLEDFPFKQLLGPDFGYVTRETDGFGVSELDSFGNLEVSPPVTVGGKEYPLGRILIGSSsYPSEGG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941225  449 RRMTKVVRDFLQAQQVQAPVELYSDWLTVGHVDEFMTFIPIPGKKEFRLLMASTSACYQLFREKQKAGHGEAVMFKGLG- 527
Cdd:pfam03068 161 RRMTKVLRDFLAAQQVQPPVELFSDWLTVGHVDEFVQFVPADNKKGFRLLLASPRACYKLLEKLQEEGHGEALLFSGNGd 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941225  528 ----GMSSKRITINKILSNESLTQENQYFQRCLDWNRDILKRELALTEKDIIDLPALFKMD------ENHQARAFFPNMV 597
Cdd:pfam03068 241 tlhaNGREANTTINELLADESLIQQNLYVQKCIDWNRDILKRELGLTEDDIIDIPALFKLEltngpcKLLRAEAFFPNMV 320
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 341941225  598 NMIVLDKDLGIPKPFGPQVEEECCLETHVRGLLEPLGLACTFIDDISAYHKFLGEVHCGTNVRRKPFTFKWWH 670
Cdd:pfam03068 321 NMVVLGKYLGIPKPFGPIINGRCCLEEAVRSLLEPLGLNCTFIDDFYSYHVLGGEVHCGTNTRRKPFAFKWWE 393
PAD_M pfam08527
Protein-arginine deiminase (PAD) middle domain; This family represents the central ...
124-282 1.89e-100

Protein-arginine deiminase (PAD) middle domain; This family represents the central non-catalytic domain of protein-arginine deiminase. This domain has an immunoglobulin-like fold.


Pssm-ID: 462510  Cd Length: 159  Bit Score: 304.04  E-value: 1.89e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941225  124 IEISLDVDADRDGEVEKNNPKKASWTWGPEGQGAILLVNCDRDTPWLPKEDCSDEKVYSKQDLQDMSQMILRTKGPDRLP 203
Cdd:pfam08527   1 VEISLDVDADRDGVVEKNNPDKGSWTWGPNGQGAILLVNCDRDNPGSQKPDCEDSKVFSLEDLKDMSLMVLRTQGPSKLF 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 341941225  204 AGYEIVLYISMSDSDKVGVFYVENPFFGQRYIHILGRQKLYHVVKYTGGSAELLFFVEGLCFPDESFSGLVSIHVSLLE 282
Cdd:pfam08527  81 DGYKLVLHVSKSDADKVRVFHAQGGDSGSRYKLVLGPGKLSYVVEYLGGQAEITFYVEGLAFPDADFSGLVSISVSLLE 159
PAD_N pfam08526
Protein-arginine deiminase (PAD) N-terminal domain; This family represents the N-terminal ...
9-122 7.07e-45

Protein-arginine deiminase (PAD) N-terminal domain; This family represents the N-terminal non-catalytic domain of protein-arginine deiminase. This domain has a cupredoxin-like fold.


Pssm-ID: 462509  Cd Length: 113  Bit Score: 155.80  E-value: 7.07e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941225    9 MLRERTVRLQYGSRVEAVYVLGTQLWTDVYSAAPAGAKTFSLKHSEGVKVEVVRDGEAEEvVTNGKQRWALSPSSTLRLS 88
Cdd:pfam08526   1 MAFQRTVRLSLDSPTHAVCVLGTETLVDVYRSAPKGCKSFSVKGSPGVLVDIAPSVPRTT-EPSGTSRWPLDPNTDVLVS 79
                          90       100       110
                  ....*....|....*....|....*....|....
gi 341941225   89 MAQASTEASSDKVTVNYYEEEGSAPIDQAGLFLT 122
Cdd:pfam08526  80 MDSASSEVNDDKVSVSYYGPDEEAPLGTAVLYLT 113
PAD_N cd04214
N-terminal non-catalytic domain of protein-arginine deiminase; The N-terminal non-catalytic ...
15-123 2.30e-36

N-terminal non-catalytic domain of protein-arginine deiminase; The N-terminal non-catalytic domain of protein-arginine deiminase has a cupredoxin-like fold, but lacks the Cu binding site. PAD (protein-arginine deiminase) and protein L-arginine iminohydrolase catalyze the conversion of protein arginine residues to citrulline residues post-translationally in a process called citrullination. The modification plays crucial regulatory roles in development and cell differentiation.


Pssm-ID: 259876  Cd Length: 108  Bit Score: 132.12  E-value: 2.30e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 341941225  15 VRLQYGSRVEAVYVLGTQLWTDVYSAAPAGAKTFSLKHSEGVKVEVVRDGEAEEVVTnGKQRWALSPSSTLRLSMAQAST 94
Cdd:cd04214    1 LRLDTGSRTHAVCVLGTETTLDIYGSAPAGATSFSVKASPGVVVDVAHSPPAKKEPT-GLWPWPLDTDVEVTMTMKAASK 79
                         90       100
                 ....*....|....*....|....*....
gi 341941225  95 EASSDKVTVNYYEEEGSAPIDQAGLFLTA 123
Cdd:cd04214   80 EVNDSKVRVSYYGPKEDAPLGKAVLYLTG 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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