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Conserved domains on  [gi|123778484|sp|Q0VG18|]
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RecName: Full=Small integral membrane protein 24; Flags: Precursor

Protein Classification

MAP17 domain-containing protein( domain architecture ID 11239333)

MAP17 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MAP17 pfam15807
Membrane-associated protein 117 kDa, PDZK1-interacting protein 1; MAP17 is a family of ...
 17-120 2.76e-47

Membrane-associated protein 117 kDa, PDZK1-interacting protein 1; MAP17 is a family of proteins found in eukaryotes. It is a small non-glycosylated two-pass membrane protein, that is overexpressed in many tumours of different origins, including carcinomas.


:

Pssm-ID: 464886  Cd Length: 121  Bit Score: 147.98  E-value: 2.76e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123778484   17 PAEAQQASERRLKPWLVGLAAVVGFLFIVFILMLANRVWCAKGRAEDEEA-TFRMEHIMNENSQPSKADKKQKKKVDRKG 95
Cdd:pfam15807  17 PAEAQQATGRRLKPWLVGLAAVVVFLFIVFVLFLVNRFWCSKARAEDEEVtTFRMEGNKYEDVLPSGTEKRYKEKKAAKE 96

                          90       100
                  ....*....|....*....|....*
gi 123778484   96 GQSNEALELEEKESSDEERGKKTAL 120
Cdd:pfam15807  97 GRSNEGLELYENEPEDEEKVKTTAM 121
 
Name Accession Description Interval E-value
MAP17 pfam15807
Membrane-associated protein 117 kDa, PDZK1-interacting protein 1; MAP17 is a family of ...
 17-120 2.76e-47

Membrane-associated protein 117 kDa, PDZK1-interacting protein 1; MAP17 is a family of proteins found in eukaryotes. It is a small non-glycosylated two-pass membrane protein, that is overexpressed in many tumours of different origins, including carcinomas.


Pssm-ID: 464886  Cd Length: 121  Bit Score: 147.98  E-value: 2.76e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123778484   17 PAEAQQASERRLKPWLVGLAAVVGFLFIVFILMLANRVWCAKGRAEDEEA-TFRMEHIMNENSQPSKADKKQKKKVDRKG 95
Cdd:pfam15807  17 PAEAQQATGRRLKPWLVGLAAVVVFLFIVFVLFLVNRFWCSKARAEDEEVtTFRMEGNKYEDVLPSGTEKRYKEKKAAKE 96

                          90       100
                  ....*....|....*....|....*
gi 123778484   96 GQSNEALELEEKESSDEERGKKTAL 120
Cdd:pfam15807  97 GRSNEGLELYENEPEDEEKVKTTAM 121
 
Name Accession Description Interval E-value
MAP17 pfam15807
Membrane-associated protein 117 kDa, PDZK1-interacting protein 1; MAP17 is a family of ...
 17-120 2.76e-47

Membrane-associated protein 117 kDa, PDZK1-interacting protein 1; MAP17 is a family of proteins found in eukaryotes. It is a small non-glycosylated two-pass membrane protein, that is overexpressed in many tumours of different origins, including carcinomas.


Pssm-ID: 464886  Cd Length: 121  Bit Score: 147.98  E-value: 2.76e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 123778484   17 PAEAQQASERRLKPWLVGLAAVVGFLFIVFILMLANRVWCAKGRAEDEEA-TFRMEHIMNENSQPSKADKKQKKKVDRKG 95
Cdd:pfam15807  17 PAEAQQATGRRLKPWLVGLAAVVVFLFIVFVLFLVNRFWCSKARAEDEEVtTFRMEGNKYEDVLPSGTEKRYKEKKAAKE 96

                          90       100
                  ....*....|....*....|....*
gi 123778484   96 GQSNEALELEEKESSDEERGKKTAL 120
Cdd:pfam15807  97 GRSNEGLELYENEPEDEEKVKTTAM 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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