NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|74676506|sp|Q12035|]
View 

RecName: Full=rRNA-processing protein FCF2; AltName: Full=FAF1 copurifying factor 2

Protein Classification

Fcf2 domain-containing protein( domain architecture ID 10554729)

Fcf2 domain-containing protein such as Saccharomyces cerevisiae rRNA-processing protein FCF2 and human deoxynucleotidyltransferase terminal-interacting protein 2

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Fcf2 pfam08698
Fcf2 pre-rRNA processing; This is a family of eukaryotic nucleolar proteins that are involved ...
 102-190 1.45e-39

Fcf2 pre-rRNA processing; This is a family of eukaryotic nucleolar proteins that are involved in pre-rRNA processing.


:

Pssm-ID: 462566  Cd Length: 93  Bit Score: 131.11  E-value: 1.45e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74676506   102 DWFTLPKPDdnMRREVQRDLLLIKHRAALDPKRHYKKQ-RWEVPERFAIGTIIEDKSEFYSSRMNRKERKSTILETLMGD 180
Cdd:pfam08698   6 DWFNLPAPE--LTPELKRDLQLLKLRNALDPKRFYKKDdKKKLPKYFQVGTIIEGPTEFYSSRLTRKERKRTLVEELLAD 83

                          90
                  ....*....|
gi 74676506   181 EASNKYFKRK 190
Cdd:pfam08698  84 EEAKKYFKRK 93
 
Name Accession Description Interval E-value
Fcf2 pfam08698
Fcf2 pre-rRNA processing; This is a family of eukaryotic nucleolar proteins that are involved ...
 102-190 1.45e-39

Fcf2 pre-rRNA processing; This is a family of eukaryotic nucleolar proteins that are involved in pre-rRNA processing.


Pssm-ID: 462566  Cd Length: 93  Bit Score: 131.11  E-value: 1.45e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74676506   102 DWFTLPKPDdnMRREVQRDLLLIKHRAALDPKRHYKKQ-RWEVPERFAIGTIIEDKSEFYSSRMNRKERKSTILETLMGD 180
Cdd:pfam08698   6 DWFNLPAPE--LTPELKRDLQLLKLRNALDPKRFYKKDdKKKLPKYFQVGTIIEGPTEFYSSRLTRKERKRTLVEELLAD 83

                          90
                  ....*....|
gi 74676506   181 EASNKYFKRK 190
Cdd:pfam08698  84 EEAKKYFKRK 93
 
Name Accession Description Interval E-value
Fcf2 pfam08698
Fcf2 pre-rRNA processing; This is a family of eukaryotic nucleolar proteins that are involved ...
 102-190 1.45e-39

Fcf2 pre-rRNA processing; This is a family of eukaryotic nucleolar proteins that are involved in pre-rRNA processing.


Pssm-ID: 462566  Cd Length: 93  Bit Score: 131.11  E-value: 1.45e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 74676506   102 DWFTLPKPDdnMRREVQRDLLLIKHRAALDPKRHYKKQ-RWEVPERFAIGTIIEDKSEFYSSRMNRKERKSTILETLMGD 180
Cdd:pfam08698   6 DWFNLPAPE--LTPELKRDLQLLKLRNALDPKRFYKKDdKKKLPKYFQVGTIIEGPTEFYSSRLTRKERKRTLVEELLAD 83

                          90
                  ....*....|
gi 74676506   181 EASNKYFKRK 190
Cdd:pfam08698  84 EEAKKYFKRK 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH