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Conserved domains on  [gi|2577295307|sp|Q1K730|]
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RecName: Full=Large ribosomal subunit protein bL27m

Protein Classification

bL27 family ribosomal protein( domain architecture ID 10470195)

bL27 family ribosomal protein such as mitochondrial 39S ribosomal protein L27 from vertebrates and 54S ribosomal protein L27 from fungi

Gene Ontology:  GO:0006412|GO:0003735
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ribosomal_L27 pfam01016
Ribosomal L27 protein;
61-142 1.01e-32

Ribosomal L27 protein;


:

Pssm-ID: 460025  Cd Length: 77  Bit Score: 118.61  E-value: 1.01e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2577295307  61 ASVKAQGAYRlKPKRTIPKKLGAKKTGDQYVIPGNIIYKQRGTLWHPGENTIMGRDHTIHAAVAGYVKYYRdpqlHPDRQ 140
Cdd:pfam01016   1 AHKKGGGSTR-NGRDSNGKRLGVKKFGGQFVKAGNIIVRQRGTKFHPGENVGMGKDHTLFALVDGYVKFER----KPKRK 75


                  ..
gi 2577295307 141 YI 142
Cdd:pfam01016  76 YV 77
 
Name Accession Description Interval E-value
Ribosomal_L27 pfam01016
Ribosomal L27 protein;
61-142 1.01e-32

Ribosomal L27 protein;


Pssm-ID: 460025  Cd Length: 77  Bit Score: 118.61  E-value: 1.01e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2577295307  61 ASVKAQGAYRlKPKRTIPKKLGAKKTGDQYVIPGNIIYKQRGTLWHPGENTIMGRDHTIHAAVAGYVKYYRdpqlHPDRQ 140
Cdd:pfam01016   1 AHKKGGGSTR-NGRDSNGKRLGVKKFGGQFVKAGNIIVRQRGTKFHPGENVGMGKDHTLFALVDGYVKFER----KPKRK 75


                  ..
gi 2577295307 141 YI 142
Cdd:pfam01016  76 YV 77
rpmA PRK05435
50S ribosomal protein L27; Validated
 78-145 3.08e-22

50S ribosomal protein L27; Validated


Pssm-ID: 235464  Cd Length: 82  Bit Score: 90.09  E-value: 3.08e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2577295307  78 PKKLGAKKTGDQYVIPGNIIYKQRGTLWHPGENTIMGRDHTIHAAVAGYVKYYRdpqLHPDRQYIGVV 145
Cdd:PRK05435   18 SKRLGVKRFGGQFVKAGNIIVRQRGTKFHPGVNVGRGKDHTLFALVDGVVKFER---KGRNRKYVSVV 82
RpmA COG0211
Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L27 ...
 78-145 5.82e-22

Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L27 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439981  Cd Length: 82  Bit Score: 89.34  E-value: 5.82e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2577295307  78 PKKLGAKKTGDQYVIPGNIIYKQRGTLWHPGENTIMGRDHTIHAAVAGYVKYYRDPQlhpDRQYIGVV 145
Cdd:COG0211    18 SKRLGVKRFGGQKVKAGNIIVRQRGTKFHPGKNVGMGKDHTLFALVDGVVKFERKGK---GRKFVSVV 82
L27 TIGR00062
ribosomal protein L27; Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have ...
 61-145 4.05e-19

ribosomal protein L27; Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have an additional C-terminal domain. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272882 [Multi-domain]  Cd Length: 84  Bit Score: 81.70  E-value: 4.05e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2577295307  61 ASVKAQGAYRlKPKRTIPKKLGAKKTGDQYVIPGNIIYKQRGTLWHPGENTIMGRDHTIHAAVAGYVKYYRDPQlHPDRQ 140
Cdd:TIGR00062   2 ATKKGVGSTK-NGRDSAAKRLGVKKAGGQFVRAGSIIVRQRGTKFHPGENVGMGKDHTLFALSDGVVKFELKGF-HRKRK 79


                  ....*
gi 2577295307 141 YIGVV 145
Cdd:TIGR00062  80 FVSVV 84
 
Name Accession Description Interval E-value
Ribosomal_L27 pfam01016
Ribosomal L27 protein;
61-142 1.01e-32

Ribosomal L27 protein;


Pssm-ID: 460025  Cd Length: 77  Bit Score: 118.61  E-value: 1.01e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2577295307  61 ASVKAQGAYRlKPKRTIPKKLGAKKTGDQYVIPGNIIYKQRGTLWHPGENTIMGRDHTIHAAVAGYVKYYRdpqlHPDRQ 140
Cdd:pfam01016   1 AHKKGGGSTR-NGRDSNGKRLGVKKFGGQFVKAGNIIVRQRGTKFHPGENVGMGKDHTLFALVDGYVKFER----KPKRK 75


                  ..
gi 2577295307 141 YI 142
Cdd:pfam01016  76 YV 77
rpmA PRK05435
50S ribosomal protein L27; Validated
 78-145 3.08e-22

50S ribosomal protein L27; Validated


Pssm-ID: 235464  Cd Length: 82  Bit Score: 90.09  E-value: 3.08e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2577295307  78 PKKLGAKKTGDQYVIPGNIIYKQRGTLWHPGENTIMGRDHTIHAAVAGYVKYYRdpqLHPDRQYIGVV 145
Cdd:PRK05435   18 SKRLGVKRFGGQFVKAGNIIVRQRGTKFHPGVNVGRGKDHTLFALVDGVVKFER---KGRNRKYVSVV 82
RpmA COG0211
Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L27 ...
 78-145 5.82e-22

Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L27 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 439981  Cd Length: 82  Bit Score: 89.34  E-value: 5.82e-22
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2577295307  78 PKKLGAKKTGDQYVIPGNIIYKQRGTLWHPGENTIMGRDHTIHAAVAGYVKYYRDPQlhpDRQYIGVV 145
Cdd:COG0211    18 SKRLGVKRFGGQKVKAGNIIVRQRGTKFHPGKNVGMGKDHTLFALVDGVVKFERKGK---GRKFVSVV 82
L27 TIGR00062
ribosomal protein L27; Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have ...
 61-145 4.05e-19

ribosomal protein L27; Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have an additional C-terminal domain. [Protein synthesis, Ribosomal proteins: synthesis and modification]


Pssm-ID: 272882 [Multi-domain]  Cd Length: 84  Bit Score: 81.70  E-value: 4.05e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2577295307  61 ASVKAQGAYRlKPKRTIPKKLGAKKTGDQYVIPGNIIYKQRGTLWHPGENTIMGRDHTIHAAVAGYVKYYRDPQlHPDRQ 140
Cdd:TIGR00062   2 ATKKGVGSTK-NGRDSAAKRLGVKKAGGQFVRAGSIIVRQRGTKFHPGENVGMGKDHTLFALSDGVVKFELKGF-HRKRK 79


                  ....*
gi 2577295307 141 YIGVV 145
Cdd:TIGR00062  80 FVSVV 84
rpl27 CHL00121
ribosomal protein L27; Reviewed
 78-129 3.93e-14

ribosomal protein L27; Reviewed


Pssm-ID: 214370  Cd Length: 86  Bit Score: 67.34  E-value: 3.93e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2577295307  78 PKKLGAKKTGDQYVIPGNIIYKQRGTLWHPGENTIMGRDHTIHAAVAGYVKY 129
Cdd:CHL00121   18 AKRLGVKRFGGEKVSAGNILIRQRGTKFKPGLNVGCGKDFTLYALIDGFVKF 69
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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