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Conserved domains on  [gi|12230927|sp|Q51468|]
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RecName: Full=Flagellar biosynthetic protein FliP

Protein Classification

flagellar type III secretion system pore protein FliP( domain architecture ID 10003557)

flagellar type III secretion system pore protein FliP plays a role in the flagellum-specific transport system

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
30-253 2.36e-131

Flagellar biosynthesis protein FliP [Cell motility];


:

Pssm-ID: 440949  Cd Length: 249  Bit Score: 370.98  E-value: 2.36e-131
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927  30 TSISAITVTTNG-QGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMF 108
Cdd:COG1338  25 PGLPSLSLTLGGaGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQALGTQQTPPNQVLIGLALFLTFF 104

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927 109 VMAPVFDKINSQALQPYLNEQIPAQEALQKAEVPLKAFMLAQTRTSDLELFVRLSKRTDIGSPEATPLTILVPAFVTSEL 188
Cdd:COG1338 105 VMAPVFDQIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPPPETPEDVPLRVLIPAFVISEL 184

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 12230927 189 KTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSFG 253
Cdd:COG1338 185 KTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGSLVRSFG 249
 
Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
30-253 2.36e-131

Flagellar biosynthesis protein FliP [Cell motility];


Pssm-ID: 440949  Cd Length: 249  Bit Score: 370.98  E-value: 2.36e-131
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927  30 TSISAITVTTNG-QGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMF 108
Cdd:COG1338  25 PGLPSLSLTLGGaGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQALGTQQTPPNQVLIGLALFLTFF 104

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927 109 VMAPVFDKINSQALQPYLNEQIPAQEALQKAEVPLKAFMLAQTRTSDLELFVRLSKRTDIGSPEATPLTILVPAFVTSEL 188
Cdd:COG1338 105 VMAPVFDQIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPPPETPEDVPLRVLIPAFVISEL 184

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 12230927 189 KTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSFG 253
Cdd:COG1338 185 KTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGSLVRSFG 249
fliP PRK05699
flagellar biosynthesis protein FliP; Reviewed
 31-254 4.28e-124

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 235566  Cd Length: 245  Bit Score: 352.57  E-value: 4.28e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927   31 SISAITVTTNGQGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVM 110
Cdd:PRK05699  23 PLPGLNLLPGANGGQEYSLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLLRQALGTQQTPPNQVLIGLALFLTFFIM 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927  111 APVFDKINSQALQPYLNEQIPAQEALQKAEVPLKAFMLAQTRTSDLELFVRLSKrTDIGSPEATPLTILVPAFVTSELKT 190
Cdd:PRK05699 103 SPVFDKIYDDAIQPYLDEKITLEEALERAAAPLREFMLKQTREKDLALFAKLAG-EPPKTPEDVPLSVLVPAFVLSELKT 181

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 12230927  191 AFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSFGT 254
Cdd:PRK05699 182 AFQIGFLIFLPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNLLVGSLVQSFGG 245
FliP pfam00813
FliP family;
57-248 5.08e-108

FliP family;


Pssm-ID: 425882  Cd Length: 191  Bit Score: 309.73  E-value: 5.08e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927    57 MTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINSQALQPYLNEQIPAQEAL 136
Cdd:pfam00813   1 LTVLSLAPAILIMMTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTFFIMAPVFQQIYEDALQPYLAGEITQEEAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927   137 QKAEVPLKAFMLAQTRTSDLELFVRLSKRTDiGSPEATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAM 216
Cdd:pfam00813  81 ERASEPLREFMLKQTREKDLALFLDLAGQWP-ETAEDVPLTVLIPAFVISELKTAFQIGFLIYLPFLVIDLVVASVLMSM 159

                         170       180       190
                  ....*....|....*....|....*....|..
gi 12230927   217 GMMMLSPLIISLPFKIMLFVLVDGWALIIGTL 248
Cdd:pfam00813 160 GMMMLPPVTISLPFKLLLFVLVDGWTLLVGSL 191
fliP TIGR01103
flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis ...
 56-252 1.59e-98

flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes in motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 211625  Cd Length: 197  Bit Score: 286.20  E-value: 1.59e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927    56 IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINSQALQPYLNEQIPAQEA 135
Cdd:TIGR01103   1 LLTVLSLAPAILIMMTSFTRIVIVLSILRSALGLQSTPPNQVLLGLALFLTFFVMAPTFDRIYDDAYQPLLDNQISEQEA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927   136 LQKAEVPLKAFMLAQTRTSDLELFVRLSKRTDIGSPEATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMA 215
Cdd:TIGR01103  81 YQKAEEPLREFMLRQTRDKDLALFMRLAKIPKPQTPEAVPLRVLVPAFMLSELKTAFQIGFLIFIPFLIIDLVVASVLMA 160

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 12230927   216 MGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSF 252
Cdd:TIGR01103 161 MGMMMLPPVMISLPFKLMLFVLVDGWNLLVGSLVQSF 197
 
Name Accession Description Interval E-value
FliP COG1338
Flagellar biosynthesis protein FliP [Cell motility];
30-253 2.36e-131

Flagellar biosynthesis protein FliP [Cell motility];


Pssm-ID: 440949  Cd Length: 249  Bit Score: 370.98  E-value: 2.36e-131
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927  30 TSISAITVTTNG-QGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMF 108
Cdd:COG1338  25 PGLPSLSLTLGGaGGGQTYSLSLQILLLLTVLSLAPAILLMMTSFTRIIIVLSFLRQALGTQQTPPNQVLIGLALFLTFF 104

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927 109 VMAPVFDKINSQALQPYLNEQIPAQEALQKAEVPLKAFMLAQTRTSDLELFVRLSKRTDIGSPEATPLTILVPAFVTSEL 188
Cdd:COG1338 105 VMAPVFDQIYDDALQPYLAGEITQEEALERASEPLREFMLKQTREKDLALFADLAGEPPPETPEDVPLRVLIPAFVISEL 184

                       170       180       190       200       210       220
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 12230927 189 KTAFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSFG 253
Cdd:COG1338 185 KTAFQIGFLIFLPFLVIDLVVASVLMSMGMMMLPPVMISLPFKLLLFVLVDGWNLLVGSLVRSFG 249
fliP PRK05699
flagellar biosynthesis protein FliP; Reviewed
 31-254 4.28e-124

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 235566  Cd Length: 245  Bit Score: 352.57  E-value: 4.28e-124
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927   31 SISAITVTTNGQGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVM 110
Cdd:PRK05699  23 PLPGLNLLPGANGGQEYSLSLQLLLLLTVLSLAPAILLMMTSFTRIIIVLSLLRQALGTQQTPPNQVLIGLALFLTFFIM 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927  111 APVFDKINSQALQPYLNEQIPAQEALQKAEVPLKAFMLAQTRTSDLELFVRLSKrTDIGSPEATPLTILVPAFVTSELKT 190
Cdd:PRK05699 103 SPVFDKIYDDAIQPYLDEKITLEEALERAAAPLREFMLKQTREKDLALFAKLAG-EPPKTPEDVPLSVLVPAFVLSELKT 181

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 12230927  191 AFQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSFGT 254
Cdd:PRK05699 182 AFQIGFLIFLPFLIIDLVVASVLMSMGMMMLPPVIISLPFKLLLFVLVDGWNLLVGSLVQSFGG 245
FliP pfam00813
FliP family;
57-248 5.08e-108

FliP family;


Pssm-ID: 425882  Cd Length: 191  Bit Score: 309.73  E-value: 5.08e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927    57 MTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINSQALQPYLNEQIPAQEAL 136
Cdd:pfam00813   1 LTVLSLAPAILIMMTSFTRIVIVLSFLRNALGTQQTPPNQVLIGLALFLTFFIMAPVFQQIYEDALQPYLAGEITQEEAL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927   137 QKAEVPLKAFMLAQTRTSDLELFVRLSKRTDiGSPEATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMAM 216
Cdd:pfam00813  81 ERASEPLREFMLKQTREKDLALFLDLAGQWP-ETAEDVPLTVLIPAFVISELKTAFQIGFLIYLPFLVIDLVVASVLMSM 159

                         170       180       190
                  ....*....|....*....|....*....|..
gi 12230927   217 GMMMLSPLIISLPFKIMLFVLVDGWALIIGTL 248
Cdd:pfam00813 160 GMMMLPPVTISLPFKLLLFVLVDGWTLLVGSL 191
fliP TIGR01103
flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis ...
 56-252 1.59e-98

flagellar biosynthetic protein FliP; This model describes bacterial flagellar biogenesis protein fliP, which is one of the genes in motility locus on the bacterial chromosome that is involved in structure and function of bacterial flagellum. It was demonstrated that mutants in fliP locus were non-flagellated and non-motile, while revertants were flagellated and motile. [Cellular processes, Chemotaxis and motility]


Pssm-ID: 211625  Cd Length: 197  Bit Score: 286.20  E-value: 1.59e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927    56 IMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINSQALQPYLNEQIPAQEA 135
Cdd:TIGR01103   1 LLTVLSLAPAILIMMTSFTRIVIVLSILRSALGLQSTPPNQVLLGLALFLTFFVMAPTFDRIYDDAYQPLLDNQISEQEA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927   136 LQKAEVPLKAFMLAQTRTSDLELFVRLSKRTDIGSPEATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLVVSSVLMA 215
Cdd:TIGR01103  81 YQKAEEPLREFMLRQTRDKDLALFMRLAKIPKPQTPEAVPLRVLVPAFMLSELKTAFQIGFLIFIPFLIIDLVVASVLMA 160

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 12230927   216 MGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSF 252
Cdd:TIGR01103 161 MGMMMLPPVMISLPFKLMLFVLVDGWNLLVGSLVQSF 197
PRK12430 PRK12430
putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional
 32-254 2.94e-80

putative bifunctional flagellar biosynthesis protein FliO/FliP; Provisional


Pssm-ID: 237101 [Multi-domain]  Cd Length: 379  Bit Score: 245.95  E-value: 2.94e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927   32 ISAITVTTNGQGQQEYSVSLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMA 111
Cdd:PRK12430 157 IPGLTSHILDDGSQTWSVPVQTLVFLTSLTFLPAFLLMMTSFTRIVIVFGLLRNALGTPYAPPNQILLGLALFLTFFIMS 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927  112 PVFDKINSQALQPYLNEQIPAQEALQKAEVPLKAFMLAQTRTSDLELFVRLSKRTDIGSPEATPLTILVPAFVTSELKTA 191
Cdd:PRK12430 237 PTFDKIYKDAYLPFSQEKINMDDAILKGAMPLKKFMLNQTRTPDLELFSKLAHISSYKNKNEIPMRILLPSFITSELKTA 316

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 12230927  192 FQIGFMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSFGT 254
Cdd:PRK12430 317 FQIGFTIFIPFLIIDLVVASVLMALGMMMVPPSTISLPFKLMLFVLVDGWQLLITSLAHSFNT 379
EscR COG4790
Type III secretory pathway, EscR/YscR component [Intracellular trafficking, secretion, and ...
 51-252 5.51e-71

Type III secretory pathway, EscR/YscR component [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 443819  Cd Length: 216  Bit Score: 216.58  E-value: 5.51e-71
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927  51 LQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINSQALQPYLNEQI 130
Cdd:COG4790   8 LSLILLLALLSLLPFLVVMGTSFLKISVVLSLLRNALGVQQVPPNMVLNGIALILTLFVMAPVGQEIYDRLQAAPVDFSS 87

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927 131 PAQ--EALQKAEVPLKAFMLAQTRTSDLELFVRLSKRT----DIGSPEATPLTILVPAFVTSELKTAFQIGFMIFIPFLI 204
Cdd:COG4790  88 SASvlEAVDAGLEPLRDFLKKNTDPEERAFFLDAAQRLwpeeYAAKLKPDDLLVLLPAFVLSELTSAFKIGFLLYLPFVV 167

                       170       180       190       200
                ....*....|....*....|....*....|....*....|....*...
gi 12230927 205 IDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSF 252
Cdd:COG4790 168 IDLVVSNILLALGMMMVSPMTISLPFKLLLFVLVDGWTLLLHGLVLSY 215
PRK12797 PRK12797
type III secretion system protein YscR; Provisional
 51-250 5.95e-65

type III secretion system protein YscR; Provisional


Pssm-ID: 237210  Cd Length: 213  Bit Score: 201.25  E-value: 5.95e-65
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927   51 LQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINSQALQPYLNEQI 130
Cdd:PRK12797   8 LQLIILLALLSLLPLIAVMGTSFLKISVVLSLLRNALGVQQVPPNMALYGLALILTLFVMAPVGLAIQDRLQQPPLSLQD 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927  131 PA--QEALQKAEVPLKAFMLAQTRTSDLELFVRLSKRTD----IGSPEATPLTILVPAFVTSELKTAFQIGFMIFIPFLI 204
Cdd:PRK12797  88 PDsvLQLLDAALAPLRDFLKKHTDERERTFFVRSAQRIWpeeaADSLKKDDLLILIPAFTLSELTRAFEIGFLLYLPFIV 167

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 12230927  205 IDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAG 250
Cdd:PRK12797 168 IDLIISNILLAMGMMMVSPTTISLPFKLLLFVLVDGWSRLLHGLVL 213
fliP PRK12783
flagellar biosynthesis protein FliP; Reviewed
 51-252 3.38e-56

flagellar biosynthesis protein FliP; Reviewed


Pssm-ID: 171720  Cd Length: 255  Bit Score: 180.45  E-value: 3.38e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927   51 LQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINSQALQPYLNEQI 130
Cdd:PRK12783  51 IQLVALLTVLSLAPGLLVMVTSFTRFAVALSFLRSGLGLQSTPANLFLVSLALFMTFYVMAPTFDRAWNEGVKPLQENRI 130

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927  131 PAQEALQKAEVPLKAFMLAQTRTSDLELFVRLSKRTDIGSP--EATPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDLV 208
Cdd:PRK12783 131 SEEEAFGKIVDPFREFMTQHVRPKDLQTFTDLASRSFPKAEagEKIDLRILIPAFMISELRRGFEIGFLIVLPFLVIDMI 210

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....
gi 12230927  209 VSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSF 252
Cdd:PRK12783 211 VATIVMSMGMMMLPPTVISLPFKVLFFVLIDGWNLLVSGLVRSF 254
yscR TIGR01102
type III secretion apparatus protein, YscR/HrcR family; This model identifies the generic ...
 53-248 2.19e-53

type III secretion apparatus protein, YscR/HrcR family; This model identifies the generic virulence translocation proteins in bacteria. It derives its name:'Yop' from Yersinia enterocolitica species, where this virulence protein was identified. In bacterial pathogenesis, Yop effector proteins are translocated into the eukaryotic cells. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 130172  Cd Length: 202  Bit Score: 171.37  E-value: 2.19e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927    53 ILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINSQALQPYLNEQIPA 132
Cdd:TIGR01102   1 LIAVLAALSLLPFIIVVGTSFLKISVVLGILRNALGVQQVPPNMALYGIALILSMFVMAPVGHQAQDRFHQEPVAYSNID 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927   133 --QEALQKAEVPLKAFMLAQTRTSDLELFVRLSKRT----DIGSPEATPLTILVPAFVTSELKTAFQIGFMIFIPFLIID 206
Cdd:TIGR01102  81 flQKSLDAGLAPYREFLKKNTDEDEVAFFERSTQKMwpkeMADRLKKDSLLILLPAFTLSELTAAFKIGFLLYLPFIVID 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 12230927   207 LVVSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTL 248
Cdd:TIGR01102 161 LIVSNILLALGMMMVSPMTISLPFKLLLFVLIDGWSRLLHGL 202
PRK09617 PRK09617
type III secretion system protein; Reviewed
 55-252 4.29e-51

type III secretion system protein; Reviewed


Pssm-ID: 236593  Cd Length: 243  Bit Score: 166.84  E-value: 4.29e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927   55 LIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINSQALQPYLNEQIPAQE 134
Cdd:PRK09617  30 VILIFLALSPFLVMLLTSFLKIIIVLSLLRNALGVQQTPPSQVLNGIALILSIYIMFPTGVAMYNDAQKGIESNAVPRSL 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927  135 -----------ALQKAEVPLKAFMLAQTRTSDLELFVRLSKRT----DIGSPEATPLTILVPAFVTSELKTAFQIGFMIF 199
Cdd:PRK09617 110 fsaegaetvfvAANKSKEPLRSFLIKNTPKPQIASFYKISQKTfppeIRDALTPSDFMIIIPAFIMGQLKNAFEIGVLIY 189

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 12230927  200 IPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIIGTLAGSF 252
Cdd:PRK09617 190 LPFFVIDLVTANVLLAMGMMMLSPLSISLPLKLLLVVMVDGWTLLLEGLMISF 242
spaP PRK12796
EscR/YscR/HrcR family type III secretion system export apparatus protein;
50-244 3.05e-38

EscR/YscR/HrcR family type III secretion system export apparatus protein;


Pssm-ID: 237209  Cd Length: 221  Bit Score: 133.18  E-value: 3.05e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927   50 SLQILLIMTALSFIPAFVMLMTSFTRIIIVFSILRQALGLQSTPSNQVLVGLALFLTMFVMAPVFDKINSQalqpYLNEQ 129
Cdd:PRK12796   4 DISLIALLSFFTLLPFIIASGTCFIKFSIVFVMVRNALGLQQVPSNMTLNGIALLLSMFVMMPVIQDIYVY----FQNEP 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 12230927  130 IP---AQEALQKAEVPLKAFMLAQTRTSDLEL---FVRL-SKRTDIGSPEAT-------PLTILVPAFVTSELKTAFQIG 195
Cdd:PRK12796  80 VDfnnIASVVKFVDEGLGGYRDYLIKYSDPELvrfFERAqKKRSYGDEAEANdhdkdeiSLFSLLPAYALSEIKSAFKIG 159

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 12230927  196 FMIFIPFLIIDLVVSSVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALI 244
Cdd:PRK12796 160 FYLYLPFVVVDLVVSSVLLALGMMMMSPVTISVPIKLILFVAMDGWTLL 208
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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