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Conserved domains on  [gi|81711988|sp|Q7TUF8|]
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RecName: Full=NAD(P)H-quinone oxidoreductase subunit 3; AltName: Full=NAD(P)H dehydrogenase subunit 3; AltName: Full=NADH-plastoquinone oxidoreductase subunit 3; AltName: Full=NDH-1 subunit 3; Short=NDH-C

Protein Classification

NAD(P)H-quinone oxidoreductase subunit 3( domain architecture ID 10000018)

NAD(P)H-quinone oxidoreductase subunit 3 (NDH-C) is part of the NDH-1 complex that catalyzes the transfer of electrons from NAD(P)H to quinone in a respiratory and/or photosynthetic chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ndhC CHL00022
NADH dehydrogenase subunit 3
 1-120 5.27e-60

NADH dehydrogenase subunit 3


:

Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 179.80  E-value: 5.27e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81711988    1 MFSLPGYEYFLGFLIIAAAVPILALVTNLIVSPKGRTGERKLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLY 80
Cdd:CHL00022   1 MFLLYEYDIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 81711988   81 PWAVAFNRLGLLAFIEALIFITILVIALAYAWRKGALEWS 120
Cdd:CHL00022  81 PWAMSFDVLGVSAFIEALIFVLILIVGLVYAWRKGALEWS 120
 
Name Accession Description Interval E-value
ndhC CHL00022
NADH dehydrogenase subunit 3
 1-120 5.27e-60

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 179.80  E-value: 5.27e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81711988    1 MFSLPGYEYFLGFLIIAAAVPILALVTNLIVSPKGRTGERKLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLY 80
Cdd:CHL00022   1 MFLLYEYDIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 81711988   81 PWAVAFNRLGLLAFIEALIFITILVIALAYAWRKGALEWS 120
Cdd:CHL00022  81 PWAMSFDVLGVSAFIEALIFVLILIVGLVYAWRKGALEWS 120
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 4-119 3.36e-42

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 134.86  E-value: 3.36e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81711988   4 LPGYEYFLGFLIIAAAVPILALVTNLIVSPKGRTGERKLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWA 83
Cdd:COG0838   2 LSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWA 81

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 81711988  84 VAFNRLGLLAFIEALIFITILVIALAYAWRKGALEW 119
Cdd:COG0838  82 VVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
25-118 8.76e-39

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 125.23  E-value: 8.76e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81711988    25 LVTNLIVSPKGRTGERKLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFNRLGLLAFIEALIFITIL 104
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 81711988   105 VIALAYAWRKGALE 118
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
 
Name Accession Description Interval E-value
ndhC CHL00022
NADH dehydrogenase subunit 3
 1-120 5.27e-60

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 179.80  E-value: 5.27e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81711988    1 MFSLPGYEYFLGFLIIAAAVPILALVTNLIVSPKGRTGERKLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLY 80
Cdd:CHL00022   1 MFLLYEYDIFWAFLIISSLIPILAFLISGLLAPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLY 80

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 81711988   81 PWAVAFNRLGLLAFIEALIFITILVIALAYAWRKGALEWS 120
Cdd:CHL00022  81 PWAMSFDVLGVSAFIEALIFVLILIVGLVYAWRKGALEWS 120
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 1-120 6.54e-55

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 166.96  E-value: 6.54e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81711988    1 MFSLPGYEYFLGFLIIAAAVPILALVTNLIVSPKGRTGERKLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLY 80
Cdd:PRK06602   2 TEVLAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLF 81

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 81711988   81 PWAVAFNRLGLLAFIEALIFITILVIALAYAWRKGALEWS 120
Cdd:PRK06602  82 PWAVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALDWE 121
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 4-119 3.36e-42

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 134.86  E-value: 3.36e-42
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81711988   4 LPGYEYFLGFLIIAAAVPILALVTNLIVSPKGRTGERKLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWA 83
Cdd:COG0838   2 LSDYLPILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPWA 81

                        90       100       110
                ....*....|....*....|....*....|....*.
gi 81711988  84 VAFNRLGLLAFIEALIFITILVIALAYAWRKGALEW 119
Cdd:COG0838  82 VVFRELGWFGLIEMLVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
25-118 8.76e-39

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 125.23  E-value: 8.76e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81711988    25 LVTNLIVSPKGRTGERKLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFNRLGLLAFIEALIFITIL 104
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAIL 80

                          90
                  ....*....|....
gi 81711988   105 VIALAYAWRKGALE 118
Cdd:pfam00507  81 LVGLVYAWKKGALE 94
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
13-119 1.34e-37

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 123.31  E-value: 1.34e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81711988   13 FLIIAAAVPILALVTNLIVSPKGRTGERKLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFNRLGLL 92
Cdd:PRK07756  15 FLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGLF 94

                         90       100
                 ....*....|....*....|....*..
gi 81711988   93 AFIEALIFITILVIALAYAWRKGALEW 119
Cdd:PRK07756  95 ALIEMLIFVVMLLVGLAYAWKKKVLQW 121
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 4-119 1.12e-24

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 90.50  E-value: 1.12e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81711988    4 LPGYEYFLGFLIIAAAVPILALVTNLIVSPKGRTGERKLTYESGMEPIGGAWI--QFNIRYYMFALVFVIFDVETVFLYP 81
Cdd:PRK07928   1 MNVYIPILVLGALAAAFAVVSVVVASLVGPKRYNRAKLEAYECGIEPTPQPAGggRFPVKYYLTAMLFIVFDIEIVFLYP 80

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 81711988   82 WAVAFNRLGLLAFIEALIFITILVIALAYAWRKGALEW 119
Cdd:PRK07928  81 WAVSFDALGVFGLVEMALFMLTVFVAYAYVWRRGGLEW 118
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
1-119 6.86e-22

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 83.56  E-value: 6.86e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81711988    1 MFSLPGYEYFLGFLIIAAAVPILALVTNLIVSPKGRTGERKL---TYESGMEPIGGAwIQFNIRYYMFALVFVIFDVETV 77
Cdd:PRK08489   5 DLSHPYFGVFVLLVLTFVAFFLTTRLARFISRKLAQKNTEKLklaIYECGPEPVKQP-NRISSHFYIMALLFILFDVEIV 83

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 81711988   78 FLYPWAVAFNRLGLLAFIEALIFITILVIALAYAWRKGALEW 119
Cdd:PRK08489  84 FMFPWAVDFKLLGLFGLIEMLLFIVLLTIGFIYAWKKGALEW 125
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 14-119 5.68e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 70.89  E-value: 5.68e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81711988   14 LIIAAAVPILALVTNLIVSPKGRTGERKLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFNRLGLLA 93
Cdd:MTH00055  12 LLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFG 91

                         90       100
                 ....*....|....*....|....*.
gi 81711988   94 FIEALIFITILVIALAYAWRKGALEW 119
Cdd:MTH00055  92 FWVMYLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 7-119 6.40e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 70.73  E-value: 6.40e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81711988    7 YEYFLGFLIIAAAVPILALVTNLIVSPKGRTGERKLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAF 86
Cdd:MTH00030  10 FSTLLGVGIILLLVSISFTLGNSRIGLTKPDSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVF 89

                         90       100       110
                 ....*....|....*....|....*....|...
gi 81711988   87 NRLGLLAFIEALIFITILVIALAYAWRKGALEW 119
Cdd:MTH00030  90 NQLNLFSFWIVYTFLIVLAIGLAYEWIKGGLEW 122
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 10-119 7.39e-15

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 65.08  E-value: 7.39e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81711988   10 FLGFLIIAAAVPILALVTNLIVSPKGRTGERKLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFNRL 89
Cdd:MTH00018   3 LFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQI 82

                         90       100       110
                 ....*....|....*....|....*....|
gi 81711988   90 GLLAFIEALIFITILVIALAYAWRKGALEW 119
Cdd:MTH00018  83 APFGFWTMVGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 10-120 1.02e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 62.18  E-value: 1.02e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81711988   10 FLGFLIIAAAVPILALVTnLIVSPKGRTGERKLT-YESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFNR 88
Cdd:MTH00148   5 LLSLLFALILSPVLLLLG-LVLSKRSYSDREKSSpFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGS 83

                         90       100       110
                 ....*....|....*....|....*....|...
gi 81711988   89 LGLLAFIEAL-IFITILVIALAYAWRKGALEWS 120
Cdd:MTH00148  84 SFSVWSLTSLfIFLLILILGLFHEWNEGSLDWV 116
PRK06432 PRK06432
NADH dehydrogenase subunit A; Validated
 60-119 4.72e-13

NADH dehydrogenase subunit A; Validated


Pssm-ID: 102372  Cd Length: 144  Bit Score: 61.37  E-value: 4.72e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 81711988   60 IRYYMFALVFVIFDVETVFLYPWAVAFNRLGLLAFIEALIFITILVIALAYAWRKGALEW 119
Cdd:PRK06432  83 NQYYIVVLLFVVFDVDMLLLFPWAFDFKRLGLIPFIETLIFLAMPLFAVYYAFKMGYMRW 142
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 10-119 6.48e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 60.18  E-value: 6.48e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81711988   10 FLGFLIIAAAVPILALVTNLIVSPKGRTGERKLT-YESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAFNR 88
Cdd:MTH00161   2 ILIILLIILLISIILMILASLLSKKSIMDREKSSpFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKT 81

                         90       100       110
                 ....*....|....*....|....*....|..
gi 81711988   89 LGLLAF-IEALIFITILVIALAYAWRKGALEW 119
Cdd:MTH00161  82 SNMMSWlITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 44-120 1.35e-11

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 56.87  E-value: 1.35e-11
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81711988   44 YESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLY--PWAVAFNRLGLLaFIEALIFITILVIALAYAWRKGALEWS 120
Cdd:MTH00106  37 YECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLplPWASQTNNLNTM-LTMALLLISLLALSLAYEWTQKGLEWT 114
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 14-120 5.43e-11

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 55.25  E-value: 5.43e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81711988   14 LIIAAAVPILALVTNLIVSPKGRTGERKLT-YESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPW-AVAFNRLGL 91
Cdd:MTH00012   8 MMISLILPPLVLGAAWVLAARSTADREKTSpFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVpTILMTSTSK 87

                         90       100
                 ....*....|....*....|....*....
gi 81711988   92 LAFIEALIFITILVIALAYAWRKGALEWS 120
Cdd:MTH00012  88 TVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 10-119 1.82e-10

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 53.83  E-value: 1.82e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81711988   10 FLGFLIIAAAVPILALVTNLIVSPKGRTGERKLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYP--WAVAFN 87
Cdd:MTH00042   4 LIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPlpPATLIT 83

                         90       100       110
                 ....*....|....*....|....*....|..
gi 81711988   88 RLGLLAFIeALIFITILVIALAYAWRKGALEW 119
Cdd:MTH00042  84 NPSTLLPI-SLIFLIILTIGLVYEWVNGGLEW 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 14-119 1.83e-10

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 53.73  E-value: 1.83e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81711988   14 LIIAAAVPILALVTNLIVSPKGRTGERKLTYESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYP--WAVAFNRLgL 91
Cdd:MTH00113   7 LTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPlpWAINLTTP-T 85

                         90       100
                 ....*....|....*....|....*...
gi 81711988   92 LAFIEALIFITILVIALAYAWRKGALEW 119
Cdd:MTH00113  86 TTLTWATIILTLLTLGLIYEWLQGGLEW 113
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 44-119 8.02e-10

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 52.30  E-value: 8.02e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81711988   44 YESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLY--PWAVAFNRLGLLAFIEALIFItILVIALAYAWRKGALEW 119
Cdd:MTH00069  36 YECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLptPWASQLNTPTNTLFWSTLILI-LLTLGLIYEWIQGGLEW 112
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 11-119 3.13e-09

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 50.76  E-value: 3.13e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81711988   11 LGFLIIAAAVPILALVTNLIVSPKGRTGERKLT-YESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWA-VAFNR 88
Cdd:MTH00202   5 LFMSILSILISSLLFLVSWMLSFRSLMDREKSSpFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPlVLKSS 84

                         90       100       110
                 ....*....|....*....|....*....|.
gi 81711988   89 LGLLAFIEALIFITILVIALAYAWRKGALEW 119
Cdd:MTH00202  85 WSKGGLLGGTIFLLILIGGLIHEWKEGSLDW 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 44-119 1.57e-08

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 48.76  E-value: 1.57e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81711988   44 YESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYP--WAvafNRLG--LLAFIEALIFITILVIALAYAWRKGALEW 119
Cdd:MTH00136  38 YECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPlpWG---DQLPspLLTFFWATAVLILLTLGLIYEWLQGGLEW 114
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 44-119 3.18e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 45.27  E-value: 3.18e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81711988   44 YESGMEPIGGAWIQFNIRYYMFALVFVIFDVETVFLYPWAVAfNRLGLLAFIEALIFITILVIALAYAWRKGALEW 119
Cdd:MTH00203  38 YECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWS-NQLSSLSLLLAFLFLILLTLGLIYEWLQGGLEW 112
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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