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Conserved domains on  [gi|81895526|sp|Q80ZW2|]
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RecName: Full=Protein THEM6; Flags: Precursor

Protein Classification

thioesterase family protein( domain architecture ID 10594194)

thioesterase family protein belonging to the Hotdog fold superfamily, similar to 1,4-dihydroxy-2-naphthoyl-CoA hydrolase, which catalyzes the hydrolysis of 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA) to 1,4-dihydroxy-2-naphthoate (DHNA) during the synthesis of menaquinones and phylloquinone (vitamin K1)

CATH:  3.10.129.10
Gene Ontology:  GO:0016790
PubMed:  15307895
SCOP:  3000149

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
4HBT_2 pfam13279
Thioesterase-like superfamily; This family contains a wide variety of enzymes, principally ...
 54-185 3.26e-26

Thioesterase-like superfamily; This family contains a wide variety of enzymes, principally thioesterases. These enzymes are part of the Hotdog fold superfamily.


:

Pssm-ID: 463826  Cd Length: 121  Bit Score: 97.41  E-value: 3.26e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81895526    54 VLPSDLDLLLHMNNARYLREADVARAAHLTRCGV-LGALRDLNAHTVLAASCARYRRSLRLFEPFEVHTRLQGWDDRAFY 132
Cdd:pfam13279   1 VRPGDIDANGHMNNARYLRYFEEARDRFLERLGLdLAYREALGIGLILAEAHVRYRRELKLGDELTVETRLIDWDAKRFH 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 81895526   133 LEARFVSLrDGFVCALLRFRQHVLGTSpdrvvqhlckrRVEPPELPEDLKHWI 185
Cdd:pfam13279  81 LEHRFLSP-DGKLVATAETRLVFVDYE-----------TRKPAPIPEELLEAL 121
 
Name Accession Description Interval E-value
4HBT_2 pfam13279
Thioesterase-like superfamily; This family contains a wide variety of enzymes, principally ...
 54-185 3.26e-26

Thioesterase-like superfamily; This family contains a wide variety of enzymes, principally thioesterases. These enzymes are part of the Hotdog fold superfamily.


Pssm-ID: 463826  Cd Length: 121  Bit Score: 97.41  E-value: 3.26e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81895526    54 VLPSDLDLLLHMNNARYLREADVARAAHLTRCGV-LGALRDLNAHTVLAASCARYRRSLRLFEPFEVHTRLQGWDDRAFY 132
Cdd:pfam13279   1 VRPGDIDANGHMNNARYLRYFEEARDRFLERLGLdLAYREALGIGLILAEAHVRYRRELKLGDELTVETRLIDWDAKRFH 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 81895526   133 LEARFVSLrDGFVCALLRFRQHVLGTSpdrvvqhlckrRVEPPELPEDLKHWI 185
Cdd:pfam13279  81 LEHRFLSP-DGKLVATAETRLVFVDYE-----------TRKPAPIPEELLEAL 121
4HBT cd00586
4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate ...
 49-153 2.10e-19

4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).


Pssm-ID: 238329 [Multi-domain]  Cd Length: 110  Bit Score: 79.57  E-value: 2.10e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81895526  49 RYAGRVLPSDLDLLLHMNNARYLREADVARAAHLTRCGVLGA-LRDLNAHTVLAASCARYRRSLRLFEPFEVHTRLQGWD 127
Cdd:cd00586   2 TLEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDeLEEQGLGLVVVELEIDYLRPLRLGDRLTVETRVLRLG 81

                        90       100
                ....*....|....*....|....*.
gi 81895526 128 DRAFYLEARFVSlRDGFVCALLRFRQ 153
Cdd:cd00586  82 RKSFTFEQEIFR-EDGELLATAETVL 106
FadM COG0824
Acyl-CoA thioesterase FadM [Lipid transport and metabolism]; Acyl-CoA thioesterase FadM is ...
 53-186 2.24e-18

Acyl-CoA thioesterase FadM [Lipid transport and metabolism]; Acyl-CoA thioesterase FadM is part of the Pathway/BioSystem: Menaquinone biosynthesis


Pssm-ID: 440586 [Multi-domain]  Cd Length: 139  Bit Score: 77.63  E-value: 2.24e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81895526  53 RVLPSDLDLLLHMNNARYLREADVARAAHLTRCGV-LGALRDLNAHTVLAASCARYRRSLRLFEPFEVHTRLQGWDDRAF 131
Cdd:COG0824  11 RVRFGDTDAMGHVNNANYLRYFEEARTEFLRALGLsYAELEEEGIGLVVVEAEIDYLRPARYGDELTVETRVVRLGGSSL 90

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 81895526 132 YLEARFVSLRDGFVCALLRFRQhvlgtspdrVVQHLCKRRvePPELPEDLKHWIS 186
Cdd:COG0824  91 TFEYEIFRADDGELLATGETVL---------VFVDLETGR--PVPLPDELRAALE 134
TIGR00051 TIGR00051
acyl-CoA thioester hydrolase, YbgC/YbaW family; This model describes a subset of related ...
 53-124 1.24e-04

acyl-CoA thioester hydrolase, YbgC/YbaW family; This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon. [Unknown function, General]


Pssm-ID: 129161 [Multi-domain]  Cd Length: 117  Bit Score: 40.09  E-value: 1.24e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81895526    53 RVLPSDLDLLLHMNNARYLREADVARAAHLTRCGVL-GALRDLNAHTVLAASCARYRRSLRLFEPFEVHTRLQ 124
Cdd:TIGR00051   3 RVYYEDTDAQGIVYHANYLRYCERARTEFLRSLGFPqSVLRAEGVAFVVVNINIEYKKPARLDDVLEIRTQIE 75
 
Name Accession Description Interval E-value
4HBT_2 pfam13279
Thioesterase-like superfamily; This family contains a wide variety of enzymes, principally ...
 54-185 3.26e-26

Thioesterase-like superfamily; This family contains a wide variety of enzymes, principally thioesterases. These enzymes are part of the Hotdog fold superfamily.


Pssm-ID: 463826  Cd Length: 121  Bit Score: 97.41  E-value: 3.26e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81895526    54 VLPSDLDLLLHMNNARYLREADVARAAHLTRCGV-LGALRDLNAHTVLAASCARYRRSLRLFEPFEVHTRLQGWDDRAFY 132
Cdd:pfam13279   1 VRPGDIDANGHMNNARYLRYFEEARDRFLERLGLdLAYREALGIGLILAEAHVRYRRELKLGDELTVETRLIDWDAKRFH 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 81895526   133 LEARFVSLrDGFVCALLRFRQHVLGTSpdrvvqhlckrRVEPPELPEDLKHWI 185
Cdd:pfam13279  81 LEHRFLSP-DGKLVATAETRLVFVDYE-----------TRKPAPIPEELLEAL 121
4HBT cd00586
4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate ...
 49-153 2.10e-19

4-hydroxybenzoyl-CoA thioesterase (4HBT). Catalyzes the final step in the 4-chlorobenzoate degradation pathway in which 4-chlorobenzoate is converted to 4-hydroxybenzoate in certain soil-dwelling bacteria. 4HBT forms a homotetramer with four active sites. There is no evidence to suggest that 4HBT is related to the type I thioesterases functioning in primary or secondary metabolic pathways. Each subunit of the 4HBT tetramer adopts a so-called hot-dog fold similar to those of beta-hydroxydecanoyl-ACP dehydratase, (R)-specific enoyl-CoA hydratase, and type II, thioesterase (TEII).


Pssm-ID: 238329 [Multi-domain]  Cd Length: 110  Bit Score: 79.57  E-value: 2.10e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81895526  49 RYAGRVLPSDLDLLLHMNNARYLREADVARAAHLTRCGVLGA-LRDLNAHTVLAASCARYRRSLRLFEPFEVHTRLQGWD 127
Cdd:cd00586   2 TLEIRVRFGDTDAAGHVNNARYLRYFEEAREEFLRELGLGYDeLEEQGLGLVVVELEIDYLRPLRLGDRLTVETRVLRLG 81

                        90       100
                ....*....|....*....|....*.
gi 81895526 128 DRAFYLEARFVSlRDGFVCALLRFRQ 153
Cdd:cd00586  82 RKSFTFEQEIFR-EDGELLATAETVL 106
FadM COG0824
Acyl-CoA thioesterase FadM [Lipid transport and metabolism]; Acyl-CoA thioesterase FadM is ...
 53-186 2.24e-18

Acyl-CoA thioesterase FadM [Lipid transport and metabolism]; Acyl-CoA thioesterase FadM is part of the Pathway/BioSystem: Menaquinone biosynthesis


Pssm-ID: 440586 [Multi-domain]  Cd Length: 139  Bit Score: 77.63  E-value: 2.24e-18
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81895526  53 RVLPSDLDLLLHMNNARYLREADVARAAHLTRCGV-LGALRDLNAHTVLAASCARYRRSLRLFEPFEVHTRLQGWDDRAF 131
Cdd:COG0824  11 RVRFGDTDAMGHVNNANYLRYFEEARTEFLRALGLsYAELEEEGIGLVVVEAEIDYLRPARYGDELTVETRVVRLGGSSL 90

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*
gi 81895526 132 YLEARFVSLRDGFVCALLRFRQhvlgtspdrVVQHLCKRRvePPELPEDLKHWIS 186
Cdd:COG0824  91 TFEYEIFRADDGELLATGETVL---------VFVDLETGR--PVPLPDELRAALE 134
hot_dog cd03440
The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl ...
 49-151 2.72e-06

The hotdog fold was initially identified in the E. coli FabA (beta-hydroxydecanoyl-acyl carrier protein (ACP)-dehydratase) structure and subsequently in 4HBT (4-hydroxybenzoyl-CoA thioesterase) from Pseudomonas. A number of other seemingly unrelated proteins also share the hotdog fold. These proteins have related, but distinct, catalytic activities that include metabolic roles such as thioester hydrolysis in fatty acid metabolism, and degradation of phenylacetic acid and the environmental pollutant 4-chlorobenzoate. This superfamily also includes the PaaI-like protein FapR, a non-catalytic bacterial homolog involved in transcriptional regulation of fatty acid biosynthesis.


Pssm-ID: 239524 [Multi-domain]  Cd Length: 100  Bit Score: 44.39  E-value: 2.72e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81895526  49 RYAGRVLPSDLDLLLHMNNARYLREADVARAAHLTRCGVLGALrdlnahTVLAASCARYRRSLRLFEPFEVHTRLQGWDD 128
Cdd:cd03440   2 VLRLTVTPEDIDGGGIVHGGLLLALADEAAGAAAARLGGRGLG------AVTLSLDVRFLRPVRPGDTLTVEAEVVRVGR 75

                        90       100
                ....*....|....*....|...
gi 81895526 129 RAFYLEARFVSlRDGFVCALLRF 151
Cdd:cd03440  76 SSVTVEVEVRN-EDGKLVATATA 97
TIGR00051 TIGR00051
acyl-CoA thioester hydrolase, YbgC/YbaW family; This model describes a subset of related ...
 53-124 1.24e-04

acyl-CoA thioester hydrolase, YbgC/YbaW family; This model describes a subset of related acyl-CoA thioesterases that include several at least partially characterized proteins. YbgC is an acyl-CoA thioesterase associated with the Tol-Pal system. YbaW is part of the FadM regulon. [Unknown function, General]


Pssm-ID: 129161 [Multi-domain]  Cd Length: 117  Bit Score: 40.09  E-value: 1.24e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81895526    53 RVLPSDLDLLLHMNNARYLREADVARAAHLTRCGVL-GALRDLNAHTVLAASCARYRRSLRLFEPFEVHTRLQ 124
Cdd:TIGR00051   3 RVYYEDTDAQGIVYHANYLRYCERARTEFLRSLGFPqSVLRAEGVAFVVVNINIEYKKPARLDDVLEIRTQIE 75
FatA COG3884
Acyl-ACP thioesterase [Lipid transport and metabolism];
53-72 8.87e-03

Acyl-ACP thioesterase [Lipid transport and metabolism];


Pssm-ID: 443092 [Multi-domain]  Cd Length: 242  Bit Score: 36.08  E-value: 8.87e-03
                        10        20
                ....*....|....*....|
gi 81895526  53 RVLPSDLDLLLHMNNARYLR 72
Cdd:COG3884 155 TVRYSDIDTNGHVNNARYLE 174
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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