|
Name |
Accession |
Description |
Interval |
E-value |
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
1-838 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 1421.39 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 1 MANILRTII-ENDKGEVRKLTKIAKKVEGYANEMEALSDEELQAKTDEFKERYQNGETLDDLLPEAFAVVREASKRVLGL 79
Cdd:PRK12904 1 MLGLLKKIFgSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 80 YPYRVQIMGGVVLHHGDVPEMRTGEGKTLTATMPVYLNALAGEGVHVVTVNEYLATRDATEMGELYSWLGLSVGINLAAK 159
Cdd:PRK12904 81 RHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 160 SSSEKREAYNCDITYSTNAEIGFDYLRDNMVVRKENMVQRPLNFALVDEVDSVLIDEARTPLIVSGPvSTETNQLYHRAD 239
Cdd:PRK12904 161 SPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGP-AEDSSELYKRAN 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 240 SFVKTLSED-DYAIDTPTKTIGLKDSGIDKAEEYFHLENLYDIDNVALTHYIDNALRANYIMLLDIDYVVsEEQEILIVD 318
Cdd:PRK12904 240 KIVPTLEKEgDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIV-KDGEVVIVD 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 319 QFTGRTMEGRRFSDGLHQAIEAKEGVPIQDESKTSASITYQNMFRMYKKLAGMTGTAKTEEEEFREIYNMRIIPIPTNRP 398
Cdd:PRK12904 319 EFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRP 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 399 VARIDHQDLLYPTLEAKFRAVVADVKERHEKGQPVLVGTVAVETSDLISKMLVQAGVPHEVLNAKNHFKEAQIIMNAGQR 478
Cdd:PRK12904 399 MIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAKNHEREAEIIAQAGRP 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 479 GAVTIATNMAGRGTDIKLG------------------------------EGVRELGGLCVIGTERHESRRIDNQLRGRSG 528
Cdd:PRK12904 479 GAVTIATNMAGRGTDIKLGgnpemlaaalleeeteeqiakikaewqeehEEVLEAGGLHVIGTERHESRRIDNQLRGRSG 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 529 RQGDPGESQFYLSLEDELMRRFGSERIKAFLDRFIEEDnDVVIKSRMLTNQVESAQRRVEGNNYDTRKQVLQYDDVMREQ 608
Cdd:PRK12904 559 RQGDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMKE-GEAIEHKMVTRAIENAQKKVEGRNFDIRKQLLEYDDVMNDQ 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 609 REIIYAERYDVITAErDLAPEIKAIIKRTIERTVDSH---SQLDRKESLDAILNFAKTNLLPEDTISLHDIEDLNYEDIK 685
Cdd:PRK12904 638 RKVIYAQRNEILEGE-DLSETILDMREDVIEDLVDAYippGSYEEDWDLEGLEEALKTDFGLELPIEEWLEEGLDEEELR 716
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 686 DLLYDAALKNYDRQIAKLrDEEAVREFQKVLILMVVDNKWTDHIDALDQLRSSVGLRGYAQNNPIVEYQSEGFRMFQDMI 765
Cdd:PRK12904 717 ERILEAAEEAYEEKEEEL-GEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPLQEYKREGFELFEEML 795
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81845199 766 GAIEFDVTRTMMKAQIheqereketesrttaeqnisaqstispqdpifknvgrnDKCPCGSGKKFKNCHGRKR 838
Cdd:PRK12904 796 DSIKEEVVRTLMKVQI--------------------------------------DPCPCGSGKKYKHCHGRLA 830
|
|
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
1-836 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1421.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 1 MANILRTII--ENDKgEVRKLTKIAKKVEGYANEMEALSDEELQAKTDEFKERYQNGETLDDLLPEAFAVVREASKRVLG 78
Cdd:COG0653 1 MGKLLKKIFgsRNDR-ELKRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKRVLG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 79 LYPYRVQIMGGVVLHHGDVPEMRTGEGKTLTATMPVYLNALAGEGVHVVTVNEYLATRDATEMGELYSWLGLSVGINLAA 158
Cdd:COG0653 80 MRHFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 159 KSSSEKREAYNCDITYSTNAEIGFDYLRDNMVVRKENMVQRPLNFALVDEVDSVLIDEARTPLIVSGPvSTETNQLYHRA 238
Cdd:COG0653 160 MDPEERRAAYAADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGP-AEDSTDLYYRI 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 239 DSFVKTLSED-DYAIDTPTKTIGLKDSGIDKAEEYFHLENLYDIDNVALTHYIDNALRANYIMLLDIDYVVsEEQEILIV 317
Cdd:COG0653 239 NKLVPRLKRDgDYTVDEKARTVTLTEEGIEKVEKLLGIDNLYDPENIELVHHLNQALRAHALFKRDVDYIV-KDGEVVIV 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 318 DQFTGRTMEGRRFSDGLHQAIEAKEGVPIQDESKTSASITYQNMFRMYKKLAGMTGTAKTEEEEFREIYNMRIIPIPTNR 397
Cdd:COG0653 318 DEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYGLDVVVIPTNR 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 398 PVARIDHQDLLYPTLEAKFRAVVADVKERHEKGQPVLVGTVAVETSDLISKMLVQAGVPHEVLNAKNHFKEAQIIMNAGQ 477
Cdd:COG0653 398 PMIRKDEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVLNAKQHEREAEIVAQAGR 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 478 RGAVTIATNMAGRGTDIKLG---------------------------------EGVRELGGLCVIGTERHESRRIDNQLR 524
Cdd:COG0653 478 PGAVTIATNMAGRGTDIVLGgnpeflaaaeladrgleweeaiakikaewqaehEEVLEAGGLHVIGTERHESRRIDNQLR 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 525 GRSGRQGDPGESQFYLSLEDELMRRFGSERIKAFLDRF-IEEdnDVVIKSRMLTNQVESAQRRVEGNNYDTRKQVLQYDD 603
Cdd:COG0653 558 GRSGRQGDPGSSRFYLSLEDDLMRIFGSDRIKGMMDKLgMEE--GEPIEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDD 635
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 604 VMREQREIIYAERYDVITAErDLAPEIKAIIKRTIERTVDSHSQLDRKES---LDAILNFAKTNLLPEDTIS-LHDIEDL 679
Cdd:COG0653 636 VMNDQRKVIYEQRREILEGE-DLSETILDMREDVIEDLVDEYIPEGSYPEqwdLEGLEEALKELFGLDLPIEeWLDEEGL 714
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 680 NYEDIKDLLYDAALKNYDRQIAKLrDEEAVREFQKVLILMVVDNKWTDHIDALDQLRSSVGLRGYAQNNPIVEYQSEGFR 759
Cdd:COG0653 715 DEEELRERLLEAADEAYEEKEEEL-GPEVMRELERVVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQKDPLVEYKREAFE 793
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 760 MFQDMIGAIEFDVTRTMMKAQIH--EQEREKETESRTTAEQNISAQSTISPQDPI--FKNVGRNDKCPCGSGKKFKNCHG 835
Cdd:COG0653 794 LFEEMLDSIKEEVVRYLFRVQVRseEEREEVEEERRENHADPAGEEEEEAPKQPVrkGPKVGRNDPCPCGSGKKYKHCHG 873
|
.
gi 81845199 836 R 836
Cdd:COG0653 874 K 874
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
26-768 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1136.60 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 26 VEGYANEMEALSDEELQAKTDEFKERYQ-NGETLDDLLPEAFAVVREASKRVLGLYPYRVQIMGGVVLHHGDVPEMRTGE 104
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLAkQGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 105 GKTLTATMPVYLNALAGEGVHVVTVNEYLATRDATEMGELYSWLGLSVGINLAAKSSSEKREAYNCDITYSTNAEIGFDY 184
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 185 LRDNMVVRKENMVQRPLNFALVDEVDSVLIDEARTPLIVSGPVSTETNqLYHRADSFVKTLS-EDDYAIDTPTKTIGLKD 263
Cdd:TIGR00963 161 LRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTE-LYVQANKFAKALEkEVDYEVDEKNRAVLLTE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 264 SGIDKAEEYFHLENLYDIDNVALTHYIDNALRANYIMLLDIDYVVsEEQEILIVDQFTGRTMEGRRFSDGLHQAIEAKEG 343
Cdd:TIGR00963 240 QGMKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFQKDVDYIV-RDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEG 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 344 VPIQDESKTSASITYQNMFRMYKKLAGMTGTAKTEEEEFREIYNMRIIPIPTNRPVARIDHQDLLYPTLEAKFRAVVADV 423
Cdd:TIGR00963 319 VEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDLVYKTEEEKWKAVVEEI 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 424 KERHEKGQPVLVGTVAVETSDLISKMLVQAGVPHEVLNAKNHFKEAQIIMNAGQRGAVTIATNMAGRGTDIKLgEGVREL 503
Cdd:TIGR00963 399 KERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAGRGTDIKL-EEVKEL 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 504 GGLCVIGTERHESRRIDNQLRGRSGRQGDPGESQFYLSLEDELMRRFGSERIKAFLDRFIEEDnDVVIKSRMLTNQVESA 583
Cdd:TIGR00963 478 GGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMRIFGGDRLEGLMRRLGMDD-DEPIESKMVSRALESA 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 584 QRRVEGNNYDTRKQVLQYDDVMREQREIIYAERYDVITAErDLAPEIKAIIKRTIERTVDSHSQLDRKE---SLDAILNF 660
Cdd:TIGR00963 557 QKRVEGRNFDIRKQLLEYDDVLNKQREVIYAERRRVLESE-DLSELILQMLESTLDRIVDAYINEEKLSeewDLEGLIEK 635
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 661 AKTNLLPEDTISLHDIEDLNYEDIKDLLYDAALKNYDRQIAKLrDEEAVREFQKVLILMVVDNKWTDHIDALDQLRSSVG 740
Cdd:TIGR00963 636 LKTLFLLDGDLTPEDLENLTSEDLKELLLEKIRAAYDEKEEQL-ESERMREFERYVLLQSIDRKWKEHLDAMDLLREGIG 714
|
730 740
....*....|....*....|....*...
gi 81845199 741 LRGYAQNNPIVEYQSEGFRMFQDMIGAI 768
Cdd:TIGR00963 715 LRSYGQKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
11-383 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 697.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 11 NDKgEVRKLTKIAKKVEGYANEMEALSDEELQAKTDEFKERYQNGETLDDLLPEAFAVVREASKRVLGLYPYRVQIMGGV 90
Cdd:smart00957 9 NDR-ELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFDVQLIGGI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 91 VLHHGDVPEMRTGEGKTLTATMPVYLNALAGEGVHVVTVNEYLATRDATEMGELYSWLGLSVGINLAAKSSSEKREAYNC 170
Cdd:smart00957 88 VLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSPEERRAAYAA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 171 DITYSTNAEIGFDYLRDNMVVRKENMVQRPLNFALVDEVDSVLIDEARTPLIVSGPVSTETNQLYHRADSFVKTLSED-D 249
Cdd:smart00957 168 DITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDESSDLYHRADKFVPRLKEDeD 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 250 YAIDTPTKTIGLKDSGIDKAEEYFHLENLYDIDNVALTHYIDNALRANYIMLLDIDYVVSEEqEILIVDQFTGRTMEGRR 329
Cdd:smart00957 248 YTVDEKSRTVELTEEGIEKAEKLLGIDNLYDPENIELLHHVNQALRAHYLFKRDVDYIVRDG-EVVIVDEFTGRVMEGRR 326
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 81845199 330 FSDGLHQAIEAKEGVPIQDESKTSASITYQNMFRMYKKLAGMTGTAKTEEEEFR 383
Cdd:smart00957 327 YSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEFR 380
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
15-383 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 643.01 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 15 EVRKLTKIAKKVEGYANEMEALSDEELQAKTDEFKERYQNGETLDDLLPEAFAVVREASKRVLGLYPYRVQIMGGVVLHH 94
Cdd:pfam07517 12 DLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYDVQLIGGLVLHE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 95 GDVPEMRTGEGKTLTATMPVYLNALAGEGVHVVTVNEYLATRDATEMGELYSWLGLSVGINLAAKSSSEKREAYNCDITY 174
Cdd:pfam07517 92 GKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDPEERRAAYNADITY 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 175 STNAEIGFDYLRDNMVVRKENMVQRPLNFALVDEVDSVLIDEARTPLIVSGPVSTETNqLYHRADSFVKTLSED-DYAID 253
Cdd:pfam07517 172 GTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSE-LYREADRLVKSLEEDgDYEID 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 254 TPTKTIGLKDSGIDKAEEYFHLENLYDIDNVALTHYIDNALRANYIMLLDIDYVVSEEqEILIVDQFTGRTMEGRRFSDG 333
Cdd:pfam07517 251 EKSKNVELTEKGIEKIEKLLGIDNLYDPENVELLHHINQALKAHHLFKRDVDYIVRDG-EVVIVDEFTGRVMPGRRWSDG 329
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 81845199 334 LHQAIEAKEGVPIQDESKTSASITYQNMFRMYKKLAGMTGTAKTEEEEFR 383
Cdd:pfam07517 330 LHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEFR 379
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
40-395 |
1.22e-128 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 384.19 E-value: 1.22e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 40 ELQAKTDEFKERYQNGETLDDLLPEAFAVVREASKRVLGLYPYRVQIMGGVVLHHGDVPEMRTGEGKTLTATMPVYLNAL 119
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 120 AGEGVHVVTVNEYLATRDATEMGELYSWLGLSVGINLAAKSSSEKREAYNCDITYSTNAEIGFDYLRDNMVVRKENMVQR 199
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 200 PLNFALVDEVDSVLIDEARTPLIVSGpvstetnqlyhradsfvktlseddyaidtptktiglkdsgidkaeeyfhlenly 279
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 280 didnvalthyidnalranyimlldidyvvseeqeilivdqftgrtmegrrfsdglhqaieakegvpiqdeskTSASITYQ 359
Cdd:cd17928 187 ------------------------------------------------------------------------TLATITFQ 194
|
330 340 350
....*....|....*....|....*....|....*.
gi 81845199 360 NMFRMYKKLAGMTGTAKTEEEEFREIYNMRIIPIPT 395
Cdd:cd17928 195 NYFRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| SWIM_PBPRA1643 |
TIGR04102 |
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ... |
778-835 |
3.50e-06 |
|
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.
Pssm-ID: 200353 [Multi-domain] Cd Length: 108 Bit Score: 46.53 E-value: 3.50e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81845199 778 KAQIHEQEREKETESRTTAEQNISAQSTI--SPQDPIF-KNVGRNDKCPCGSGKKFKNCHG 835
Cdd:TIGR04102 48 EAILAEHELFANIEVNADQEENIVELDGLlnKPKTTTFeKTPNRNDPCPCGSGKKYKKCCG 108
|
|
| PRK10396 |
PRK10396 |
hypothetical protein; Provisional |
803-833 |
4.59e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 236680 [Multi-domain] Cd Length: 221 Bit Score: 48.59 E-value: 4.59e-06
10 20 30
....*....|....*....|....*....|..
gi 81845199 803 QSTISPQDPIFKN-VGRNDKCPCGSGKKFKNC 833
Cdd:PRK10396 187 QEKAVQQPIKAEEkVGRNDPCPCGSGKKFKQC 218
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
1-838 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 1421.39 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 1 MANILRTII-ENDKGEVRKLTKIAKKVEGYANEMEALSDEELQAKTDEFKERYQNGETLDDLLPEAFAVVREASKRVLGL 79
Cdd:PRK12904 1 MLGLLKKIFgSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 80 YPYRVQIMGGVVLHHGDVPEMRTGEGKTLTATMPVYLNALAGEGVHVVTVNEYLATRDATEMGELYSWLGLSVGINLAAK 159
Cdd:PRK12904 81 RHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 160 SSSEKREAYNCDITYSTNAEIGFDYLRDNMVVRKENMVQRPLNFALVDEVDSVLIDEARTPLIVSGPvSTETNQLYHRAD 239
Cdd:PRK12904 161 SPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGP-AEDSSELYKRAN 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 240 SFVKTLSED-DYAIDTPTKTIGLKDSGIDKAEEYFHLENLYDIDNVALTHYIDNALRANYIMLLDIDYVVsEEQEILIVD 318
Cdd:PRK12904 240 KIVPTLEKEgDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIV-KDGEVVIVD 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 319 QFTGRTMEGRRFSDGLHQAIEAKEGVPIQDESKTSASITYQNMFRMYKKLAGMTGTAKTEEEEFREIYNMRIIPIPTNRP 398
Cdd:PRK12904 319 EFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRP 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 399 VARIDHQDLLYPTLEAKFRAVVADVKERHEKGQPVLVGTVAVETSDLISKMLVQAGVPHEVLNAKNHFKEAQIIMNAGQR 478
Cdd:PRK12904 399 MIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAKNHEREAEIIAQAGRP 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 479 GAVTIATNMAGRGTDIKLG------------------------------EGVRELGGLCVIGTERHESRRIDNQLRGRSG 528
Cdd:PRK12904 479 GAVTIATNMAGRGTDIKLGgnpemlaaalleeeteeqiakikaewqeehEEVLEAGGLHVIGTERHESRRIDNQLRGRSG 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 529 RQGDPGESQFYLSLEDELMRRFGSERIKAFLDRFIEEDnDVVIKSRMLTNQVESAQRRVEGNNYDTRKQVLQYDDVMREQ 608
Cdd:PRK12904 559 RQGDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMKE-GEAIEHKMVTRAIENAQKKVEGRNFDIRKQLLEYDDVMNDQ 637
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 609 REIIYAERYDVITAErDLAPEIKAIIKRTIERTVDSH---SQLDRKESLDAILNFAKTNLLPEDTISLHDIEDLNYEDIK 685
Cdd:PRK12904 638 RKVIYAQRNEILEGE-DLSETILDMREDVIEDLVDAYippGSYEEDWDLEGLEEALKTDFGLELPIEEWLEEGLDEEELR 716
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 686 DLLYDAALKNYDRQIAKLrDEEAVREFQKVLILMVVDNKWTDHIDALDQLRSSVGLRGYAQNNPIVEYQSEGFRMFQDMI 765
Cdd:PRK12904 717 ERILEAAEEAYEEKEEEL-GEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPLQEYKREGFELFEEML 795
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81845199 766 GAIEFDVTRTMMKAQIheqereketesrttaeqnisaqstispqdpifknvgrnDKCPCGSGKKFKNCHGRKR 838
Cdd:PRK12904 796 DSIKEEVVRTLMKVQI--------------------------------------DPCPCGSGKKYKHCHGRLA 830
|
|
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
1-836 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1421.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 1 MANILRTII--ENDKgEVRKLTKIAKKVEGYANEMEALSDEELQAKTDEFKERYQNGETLDDLLPEAFAVVREASKRVLG 78
Cdd:COG0653 1 MGKLLKKIFgsRNDR-ELKRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKRVLG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 79 LYPYRVQIMGGVVLHHGDVPEMRTGEGKTLTATMPVYLNALAGEGVHVVTVNEYLATRDATEMGELYSWLGLSVGINLAA 158
Cdd:COG0653 80 MRHFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHG 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 159 KSSSEKREAYNCDITYSTNAEIGFDYLRDNMVVRKENMVQRPLNFALVDEVDSVLIDEARTPLIVSGPvSTETNQLYHRA 238
Cdd:COG0653 160 MDPEERRAAYAADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGP-AEDSTDLYYRI 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 239 DSFVKTLSED-DYAIDTPTKTIGLKDSGIDKAEEYFHLENLYDIDNVALTHYIDNALRANYIMLLDIDYVVsEEQEILIV 317
Cdd:COG0653 239 NKLVPRLKRDgDYTVDEKARTVTLTEEGIEKVEKLLGIDNLYDPENIELVHHLNQALRAHALFKRDVDYIV-KDGEVVIV 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 318 DQFTGRTMEGRRFSDGLHQAIEAKEGVPIQDESKTSASITYQNMFRMYKKLAGMTGTAKTEEEEFREIYNMRIIPIPTNR 397
Cdd:COG0653 318 DEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYGLDVVVIPTNR 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 398 PVARIDHQDLLYPTLEAKFRAVVADVKERHEKGQPVLVGTVAVETSDLISKMLVQAGVPHEVLNAKNHFKEAQIIMNAGQ 477
Cdd:COG0653 398 PMIRKDEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVLNAKQHEREAEIVAQAGR 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 478 RGAVTIATNMAGRGTDIKLG---------------------------------EGVRELGGLCVIGTERHESRRIDNQLR 524
Cdd:COG0653 478 PGAVTIATNMAGRGTDIVLGgnpeflaaaeladrgleweeaiakikaewqaehEEVLEAGGLHVIGTERHESRRIDNQLR 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 525 GRSGRQGDPGESQFYLSLEDELMRRFGSERIKAFLDRF-IEEdnDVVIKSRMLTNQVESAQRRVEGNNYDTRKQVLQYDD 603
Cdd:COG0653 558 GRSGRQGDPGSSRFYLSLEDDLMRIFGSDRIKGMMDKLgMEE--GEPIEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDD 635
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 604 VMREQREIIYAERYDVITAErDLAPEIKAIIKRTIERTVDSHSQLDRKES---LDAILNFAKTNLLPEDTIS-LHDIEDL 679
Cdd:COG0653 636 VMNDQRKVIYEQRREILEGE-DLSETILDMREDVIEDLVDEYIPEGSYPEqwdLEGLEEALKELFGLDLPIEeWLDEEGL 714
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 680 NYEDIKDLLYDAALKNYDRQIAKLrDEEAVREFQKVLILMVVDNKWTDHIDALDQLRSSVGLRGYAQNNPIVEYQSEGFR 759
Cdd:COG0653 715 DEEELRERLLEAADEAYEEKEEEL-GPEVMRELERVVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQKDPLVEYKREAFE 793
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 760 MFQDMIGAIEFDVTRTMMKAQIH--EQEREKETESRTTAEQNISAQSTISPQDPI--FKNVGRNDKCPCGSGKKFKNCHG 835
Cdd:COG0653 794 LFEEMLDSIKEEVVRYLFRVQVRseEEREEVEEERRENHADPAGEEEEEAPKQPVrkGPKVGRNDPCPCGSGKKYKHCHG 873
|
.
gi 81845199 836 R 836
Cdd:COG0653 874 K 874
|
|
| secA |
PRK12906 |
preprotein translocase subunit SecA; Reviewed |
1-781 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237260 [Multi-domain] Cd Length: 796 Bit Score: 1301.99 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 1 MANILRTIIENDKGEVRKLTKIAKKVEGYANEMEALSDEELQAKTDEFKERYQNGETLDDLLPEAFAVVREASKRVLGLY 80
Cdd:PRK12906 1 MANILKKWFDNDKRELKRLEKIADKVNALEDEYEKLSDEQLQAKTPEFRDRIKDGESLDDLLPEAFAVAREGAKRVLGLR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 81 PYRVQIMGGVVLHHGDVPEMRTGEGKTLTATMPVYLNALAGEGVHVVTVNEYLATRDATEMGELYSWLGLSVGINLAAKS 160
Cdd:PRK12906 81 PFDVQIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMS 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 161 SSEKREAYNCDITYSTNAEIGFDYLRDNMVVRKENMVQRPLNFALVDEVDSVLIDEARTPLIVSGPvSTETNQLYHRADS 240
Cdd:PRK12906 161 PDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQ-AEKATDLYIRADR 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 241 FVKTLSED------------DYAIDTPTKTIGLKDSGIDKAEEYFHLENLYDIDNVALTHYIDNALRANYIMLLDIDYVV 308
Cdd:PRK12906 240 FVKTLIKDeaedgdddedtgDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIMLKDIDYVV 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 309 SEeQEILIVDQFTGRTMEGRRFSDGLHQAIEAKEGVPIQDESKTSASITYQNMFRMYKKLAGMTGTAKTEEEEFREIYNM 388
Cdd:PRK12906 320 QD-GEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNM 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 389 RIIPIPTNRPVARIDHQDLLYPTLEAKFRAVVADVKERHEKGQPVLVGTVAVETSDLISKMLVQAGVPHEVLNAKNHFKE 468
Cdd:PRK12906 399 EVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKE 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 469 AQIIMNAGQRGAVTIATNMAGRGTDIKLGEGVRELGGLCVIGTERHESRRIDNQLRGRSGRQGDPGESQFYLSLEDELMR 548
Cdd:PRK12906 479 AEIIMNAGQRGAVTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMR 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 549 RFGSERIKAFLDRFIEEDNDVVIKSRMLTNQVESAQRRVEGNNYDTRKQVLQYDDVMREQREIIYAERYDVITAERDLAP 628
Cdd:PRK12906 559 RFGSDRVKAFLDRLGMNDDDQVIESRMITRQVESAQKRVEGNNYDTRKQLLQYDDVMREQREVIYKQRMQVINEDKDLKE 638
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 629 EIKAIIKRTIERTVDSHSQLDRKE-SLDAILNFAKTNLLPEDTISLHDIEDLNYEDIKDLLYDAALKNYDRQIAKLRDEE 707
Cdd:PRK12906 639 VLMPMIKRTVDRQVQMYTQGDKKDwDLDALRDFIVSAMPDEETFDFEDLKGKSPEELKKRLLDIVEDNYAEKEKQLGDPT 718
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 81845199 708 AVREFQKVLILMVVDNKWTDHIDALDQLRSSVGLRGYAQNNPIVEYQSEGFRMFQDMIGAIEFDVTRTMMKAQI 781
Cdd:PRK12906 719 QMLEFEKVVILRVVDSHWTDHIDAMDQLRQSIGLRGYGQLNPLVEYQEEGYRMFEEMISNIDYDVTRLFMKAQI 792
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
26-768 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1136.60 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 26 VEGYANEMEALSDEELQAKTDEFKERYQ-NGETLDDLLPEAFAVVREASKRVLGLYPYRVQIMGGVVLHHGDVPEMRTGE 104
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLAkQGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 105 GKTLTATMPVYLNALAGEGVHVVTVNEYLATRDATEMGELYSWLGLSVGINLAAKSSSEKREAYNCDITYSTNAEIGFDY 184
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 185 LRDNMVVRKENMVQRPLNFALVDEVDSVLIDEARTPLIVSGPVSTETNqLYHRADSFVKTLS-EDDYAIDTPTKTIGLKD 263
Cdd:TIGR00963 161 LRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTE-LYVQANKFAKALEkEVDYEVDEKNRAVLLTE 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 264 SGIDKAEEYFHLENLYDIDNVALTHYIDNALRANYIMLLDIDYVVsEEQEILIVDQFTGRTMEGRRFSDGLHQAIEAKEG 343
Cdd:TIGR00963 240 QGMKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFQKDVDYIV-RDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEG 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 344 VPIQDESKTSASITYQNMFRMYKKLAGMTGTAKTEEEEFREIYNMRIIPIPTNRPVARIDHQDLLYPTLEAKFRAVVADV 423
Cdd:TIGR00963 319 VEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDLVYKTEEEKWKAVVEEI 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 424 KERHEKGQPVLVGTVAVETSDLISKMLVQAGVPHEVLNAKNHFKEAQIIMNAGQRGAVTIATNMAGRGTDIKLgEGVREL 503
Cdd:TIGR00963 399 KERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAGRGTDIKL-EEVKEL 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 504 GGLCVIGTERHESRRIDNQLRGRSGRQGDPGESQFYLSLEDELMRRFGSERIKAFLDRFIEEDnDVVIKSRMLTNQVESA 583
Cdd:TIGR00963 478 GGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMRIFGGDRLEGLMRRLGMDD-DEPIESKMVSRALESA 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 584 QRRVEGNNYDTRKQVLQYDDVMREQREIIYAERYDVITAErDLAPEIKAIIKRTIERTVDSHSQLDRKE---SLDAILNF 660
Cdd:TIGR00963 557 QKRVEGRNFDIRKQLLEYDDVLNKQREVIYAERRRVLESE-DLSELILQMLESTLDRIVDAYINEEKLSeewDLEGLIEK 635
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 661 AKTNLLPEDTISLHDIEDLNYEDIKDLLYDAALKNYDRQIAKLrDEEAVREFQKVLILMVVDNKWTDHIDALDQLRSSVG 740
Cdd:TIGR00963 636 LKTLFLLDGDLTPEDLENLTSEDLKELLLEKIRAAYDEKEEQL-ESERMREFERYVLLQSIDRKWKEHLDAMDLLREGIG 714
|
730 740
....*....|....*....|....*...
gi 81845199 741 LRGYAQNNPIVEYQSEGFRMFQDMIGAI 768
Cdd:TIGR00963 715 LRSYGQKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| secA |
PRK12903 |
preprotein translocase subunit SecA; Reviewed |
5-803 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237258 [Multi-domain] Cd Length: 925 Bit Score: 1032.70 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 5 LRTIIENDKGEVRKLTKIAKKVEGYANEMEALSDEELQAKTDEFKERYQNGETLDDLLPEAFAVVREASKRVLGLYPYRV 84
Cdd:PRK12903 3 FLKLFFFKSTEMRIAEKILKQINDLEPYYRNLTDEELANKTNEFKDRLKNGETLEDIRVEAFAVAREATKRVLGKRPYDV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 85 QIMGGVVLHHGDVPEMRTGEGKTLTATMPVYLNALAGEGVHVVTVNEYLATRDATEMGELYSWLGLSVGINLAAKSSSEK 164
Cdd:PRK12903 83 QIIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 165 REAYNCDITYSTNAEIGFDYLRDNMVVRKENMVQRPLNFALVDEVDSVLIDEARTPLIVSGPVSTETNqLYHRADSFVKT 244
Cdd:PRK12903 163 REAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSN-LYLAADQFVRT 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 245 LSEDDYAIDTPTKTIGLKDSGIDKAEEYFHLENLYDIDNVALTHYIDNALRANYIMLLDIDYVVSEEqEILIVDQFTGRT 324
Cdd:PRK12903 242 LKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDG-KIELVDQFTGRI 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 325 MEGRRFSDGLHQAIEAKEGVPIQDESKTSASITYQNMFRMYKKLAGMTGTAKTEEEEFREIYNMRIIPIPTNRPVARIDH 404
Cdd:PRK12903 321 MEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKDE 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 405 QDLLYPTLEAKFRAVVADVKERHEKGQPVLVGTVAVETSDLISKMLVQAGVPHEVLNAKNHFKEAQIIMNAGQRGAVTIA 484
Cdd:PRK12903 401 PDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAEIIAKAGQKGAITIA 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 485 TNMAGRGTDIKLGEGVRELGGLCVIGTERHESRRIDNQLRGRSGRQGDPGESQFYLSLEDELMRRF-GSERIKafldRFI 563
Cdd:PRK12903 481 TNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLFRRFsNFDKIK----EAF 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 564 EEDNDVVIKSRMLTNQVESAQRRVEGNNYDTRKQVLQYDDVMREQREIIYAERyDVITAERDLAPEIKAIIKRTIERTVD 643
Cdd:PRK12903 557 KKLGDDEIKSKFFSKALLNAQKKIEGFNFDTRKNVLDYDDVIRQQRDLIYAQR-DLILIADDLSHVIEKMISRAVEQILK 635
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 644 SHSQLDRKESLDAI--LNFAKTNLL--PEDTISLHDIEDLNYEDIKDLLYDAALKNYDRQIAKLRDE---EAVREFQKVL 716
Cdd:PRK12903 636 NSFIILKNNTINYKelVEFLNDNLLriTHFKFSEKDFENYHKEELAQYLIEALNEIYFKKRQVILDKialNTFFESERYI 715
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 717 ILMVVDNKWTDHIDALDQLRSSVGLRGYAQNNPIVEYQSEGFRMFQDMIGAIEFDVTRTMMK-AQIHEQEREKETESRTT 795
Cdd:PRK12903 716 ILSALDKYWQNHIDTMDKLRSGVNLVQYSQKNPYQVYTEEGTKKFNILLQEIAYDVIVSLFNnPNAEKILIITEILSDGI 795
|
....*...
gi 81845199 796 AEQNISAQ 803
Cdd:PRK12903 796 NNSDINDR 803
|
|
| PRK09200 |
PRK09200 |
preprotein translocase subunit SecA; Reviewed |
1-791 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 236408 [Multi-domain] Cd Length: 790 Bit Score: 1008.31 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 1 MANILRTIIenDKGEVRKLTKIAKKVEGYANEMEALSDEELQAKTDEFKERYQNGETLDDLLPEAFAVVREASKRVLGLY 80
Cdd:PRK09200 1 MKKKLLGDI--DKRRLKKYRKIVKQINKLEGKMSSLSDEELRQKTIEFKERLASGKTLDDILPEAFAVVREAAKRVLGMR 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 81 PYRVQIMGGVVLHHGDVPEMRTGEGKTLTATMPVYLNALAGEGVHVVTVNEYLATRDATEMGELYSWLGLSVGINLAA-K 159
Cdd:PRK09200 79 PYDVQLIGALVLHEGNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDiD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 160 SSSEKREAYNCDITYSTNAEIGFDYLRDNMVVRKENMVQRPLNFALVDEVDSVLIDEARTPLIVSGPVSTETNqLYHRAD 239
Cdd:PRK09200 159 DASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSN-LYHIAA 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 240 SFVKTLSED-DYAIDTPTKTIGLKDSGIDKAEEYFHLENLYDIDNVALTHYIDNALRANYIMLLDIDYVVSEEqEILIVD 318
Cdd:PRK09200 238 KFVKTLEEDvDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDG-EIVLVD 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 319 QFTGRTMEGRRFSDGLHQAIEAKEGVPIQDESKTSASITYQNMFRMYKKLAGMTGTAKTEEEEFREIYNMRIIPIPTNRP 398
Cdd:PRK09200 317 RFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRP 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 399 VARIDHQDLLYPTLEAKFRAVVADVKERHEKGQPVLVGTVAVETSDLISKMLVQAGVPHEVLNAKNHFKEAQIIMNAGQR 478
Cdd:PRK09200 397 IIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 479 GAVTIATNMAGRGTDIKLGEGVRELGGLCVIGTERHESRRIDNQLRGRSGRQGDPGESQFYLSLEDELMRRFGSERIKAF 558
Cdd:PRK09200 477 GAVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFAPEELEKL 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 559 LDRFIEEDN--DVVIKSRMLTNQVESAQRRVEGNNYDTRKQVLQYDDVMREQREIIYAERYDVITAE-RDLAPEIKAIIK 635
Cdd:PRK09200 557 KKKLKTDAQrlTGLLFNRKVHKIVVKAQRISEGAGYSAREYALELDDVINIQRDVVYKERNRLLEEDdRDLIDIVILMID 636
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 636 RTIERTVDSHSQLDRKesldaILNFAKTNLLPEDTISLHDIEDLNYEDIKDLLYDAALKNYDRQIAKLRDEEAVREFQKV 715
Cdd:PRK09200 637 VYLEAVAEEYLLEKSL-----LEEWIYENLSFQLNEILSNTNFPDKKEVVQFLLEEAEKQLKEKRNKLPSATLYNQFLRK 711
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81845199 716 LILMVVDNKWTDHIDALDQLRSSVGLRGYAQNNPIVEYQSEGFRMFQDMIGAIEFDVTRTMMKaqiHEQEREKETE 791
Cdd:PRK09200 712 VALKAIDQNWVEQVDALQQLKEGIGLRQYGQRNPIREYQKEALESFEYMYENIKKDMVRNLLL---SLLVFDKEGE 784
|
|
| SecA2_Bac_anthr |
TIGR04397 |
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in ... |
6-778 |
0e+00 |
|
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in genomes with the preprotein translocase SecA (TIGR00963) and closely resemble it, hence the designation SecA2. However, this appears to mark a different type of accessory Sec system SecA2 (TIGR03714) from the serine-rich glycoprotein type found in Staphylococcus and Streptococcus, and the actinobacterial SecA2 (TIGR04221). This type occurs in species including Bacillus anthracis, Geobacillus thermoglucosidasius, Solibacillus silvestris, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 275190 [Multi-domain] Cd Length: 774 Bit Score: 906.03 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 6 RTIIENDKGEVRKLTKIAKKVEGYANEMEALSDEELQAKTDEFKERYQNGETLDDLLPEAFAVVREASKRVLGLYPYRVQ 85
Cdd:TIGR04397 3 KLKGDSSARELKRYEKLVAQINELEPKMEKLSDEELRQKTITFKERLEDGKTVDDIKVEAFAVVREASKRVLGMRHYDVQ 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 86 IMGGVVLHHGDVPEMRTGEGKTLTATMPVYLNALAGEGVHVVTVNEYLATRDATEMGELYSWLGLSVGINLAAKSSSEKR 165
Cdd:TIGR04397 83 LIGGLVLLEGNIAEMPTGEGKTLVASLPSYLRALEGKGVHVITVNDYLARRDRELIGQIHEFLGLTVGLNVPMMEASEKK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 166 EAYNCDITYSTNAEIGFDYLRDNMVVRKENMVQRPLNFALVDEVDSVLIDEARTPLIVSG--PVSTEtnqLYHRADSFVK 243
Cdd:TIGR04397 163 EAYQADITYGVGTEFGFDYLRDNMVYSLSDKVQRPYHFAIIDEIDSVLIDEAKTPLIIAGktGSSSE---LHYICARIIK 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 244 TLSED-DYAIDTPTKTIGLKDSGIDKAEEYFHLENLYDIDNVALTHYIDNALRANYIMLLDIDYVVsEEQEILIVDQFTG 322
Cdd:TIGR04397 240 SFEETeDYEYDPETKAASLTEEGITKIERAFGIDNLYDLEHQTLYHYLIQALRAHVLFKRDVDYIV-KDGKIELVDMFTG 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 323 RTMEGRRFSDGLHQAIEAKEGVPIQDESKTSASITYQNMFRMYKKLAGMTGTAKTEEEEFREIYNMRIIPIPTNRPVARI 402
Cdd:TIGR04397 319 RIMEGRSLSDGLHQAIEAKEGLEITEENKTQASITIQNYFRMYPKLSGMTGTAKTEEKEFRETYGMDVVQIPTNRPRIRV 398
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 403 DHQDLLYPTLEAKFRAVVADVKERHEKGQPVLVGTVAVETSDLISKMLVQAGVPHEVLNAKNHFKEAQIIMNAGQRGAVT 482
Cdd:TIGR04397 399 DWPDRVFMTYEAKYKAVAKEVKKRHETGQPILIGTTSILQSETVAKYLDKEKIPYQLLNAKTVEQEADLIALAGQKGQVT 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 483 IATNMAGRGTDIKLGEGVRELGGLCVIGTERHESRRIDNQLRGRSGRQGDPGESQFYLSLEDELMRRFGSERIKAFLDRF 562
Cdd:TIGR04397 479 IATNMAGRGTDILLGEGVHELGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSQFIISLEDDMFRRYAAEELEKWKKKL 558
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 563 iEEDNDVVIKSRMLTNQVESAQRRVEGNNYDTRKQVLQYDDVMREQREIIYAERyDVITAERDLAPEIKAIIKRTIERTV 642
Cdd:TIGR04397 559 -KTDETGEILNKDVHEFVDKVQRIIEGSHYSAREYNLKLDDVINEQRNVIYQLR-DKLLEEEDAISEVLKMIRSAVEQII 636
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 643 DSHsqldrkesldailnfAKTNLLPE--DTISLHdiEDLNY----------------EDIKDLLYDaALKNYDRQIAKLR 704
Cdd:TIGR04397 637 DQY---------------CPEEVLPEewDLERLT--EELNRifpvtfvtfdkriadkEELKDLVKD-TYEQYIAALEKLP 698
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 81845199 705 DEEAVREFQKVLILMVVDNKWTDHIDALDQLRSSVGLRGYAQNNPIVEYQSEGFRMFQDMIGAIEFDVTRTMMK 778
Cdd:TIGR04397 699 ENEEIQMRLKHVMLSVIDAHWTRHLDAMNLLKEGIGLRSYQQEDPMRLYQKEGLELFEAMYQNIEREICTELAR 772
|
|
| secA |
CHL00122 |
preprotein translocase subunit SecA; Validated |
8-781 |
0e+00 |
|
preprotein translocase subunit SecA; Validated
Pssm-ID: 214371 [Multi-domain] Cd Length: 870 Bit Score: 859.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 8 IIENDKGEVRKLTKIAKKVEGYANEMEALSDEELQAKTDEFKERYQNGETLDDLLPEAFAVVREASKRVLGLYPYRVQIM 87
Cdd:CHL00122 4 NLFNNKSKLNKYQTLVNQINLLEEELKNLTDTELRSKTNKLKKRLSNGQNLNKIIPESFALTREASFRTLGLRHFDVQLI 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 88 GGVVLHHGDVPEMRTGEGKTLTATMPVYLNALAGEGVHVVTVNEYLATRDATEMGELYSWLGLSVGINLAAKSSSEKREA 167
Cdd:CHL00122 84 GGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKN 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 168 YNCDITYSTNAEIGFDYLRDNMVVRKENMVQRPLNFALVDEVDSVLIDEARTPLIVSGPVSTETnQLYHRADSFVKTLSE 247
Cdd:CHL00122 164 YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNI-DKYIVADELAKYLEK 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 248 D-DYAIDTPTKTIGLKDSGIDKAEEYFHLENLYDIDNvALTHYIDNALRANYIMLLDIDYVVsEEQEILIVDQFTGRTME 326
Cdd:CHL00122 243 NvHYEVDEKNKNVILTEQGILFIEKILKIEDLYSAND-PWIPYILNALKAKELFFKNVHYIV-RNNEIIIVDEFTGRIMP 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 327 GRRFSDGLHQAIEAKEGVPIQDESKTSASITYQNMFRMYKKLAGMTGTAKTEEEEFREIYNMRIIPIPTNRPVARIDHQD 406
Cdd:CHL00122 321 GRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHRPMLRKDLPD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 407 LLYPTLEAKFRAVVADVKERHEKGQPVLVGTVAVETSDLISKMLVQAGVPHEVLNAK--NHFKEAQIIMNAGQRGAVTIA 484
Cdd:CHL00122 401 LIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKpeNVRRESEIVAQAGRKGSITIA 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 485 TNMAGRGTDIKLG------------------------------------------------------------------- 497
Cdd:CHL00122 481 TNMAGRGTDIILGgnpefklkkelydlllsyksnekistisqnflnilnslkndlkflslsdfenlkilneaseisipkn 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 498 -------------------------EGVRELGGLCVIGTERHESRRIDNQLRGRSGRQGDPGESQFYLSLEDELMRRFGS 552
Cdd:CHL00122 561 syqlslrflynellekykklqekekKIVKKLGGLYVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFLSLEDNLLRIFGG 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 553 ERIKAFLDRFIEEdnDVVIKSRMLTNQVESAQRRVEGNNYDTRKQVLQYDDVMREQREIIYAERYDVITAErdlapEIKA 632
Cdd:CHL00122 641 DKIQNLMQTLNLD--DEPLESKLLSKSLDSAQKKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRKILESQ-----SLRD 713
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 633 IIKRTIERTVD-----SHSQLDRKESLDAILNFAKTNLLPEDTISLHDIEDLNYEDIKDLLYDAALKNYDRQIAKLR--D 705
Cdd:CHL00122 714 WILAYGEQVIDdiitfLKSRKNPNNKFINLINKFKELLKLPLCFNKSDLNTLNSGELKKFLYQQFWISYDLKELYLEqiG 793
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81845199 706 EEAVREFQKVLILMVVDNKWTDHIDALDQLRSSVGLRGYAQNNPIVEYQSEGFRMFQDMIGAIEFDVTRTMMKAQI 781
Cdd:CHL00122 794 TGLMRELERSLLLQQIDKSWKEHLQKMSLLREAIGWRSYGQKDPLIEYKNEAFNLFINMINHIRHLVIYDLFRSSI 869
|
|
| secA2 |
TIGR03714 |
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA ... |
12-764 |
0e+00 |
|
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 163426 [Multi-domain] Cd Length: 762 Bit Score: 852.02 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 12 DKGEVRKLTKIAKKVEGYANEMEALSDEELQAKTDEFKERYQNGETLDDLLPEAFAVVREASKRVLGLYPYRVQIMGGVV 91
Cdd:TIGR03714 2 NNLRLKKLRKILNKINALKGKMATLSDEELQAKTAEFKNRLVEGESLDDILPEAYAVVREADKRVLGMFPYDVQVLGAIV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 92 LHHGDVPEMRTGEGKTLTATMPVYLNALAGEGVHVVTVNEYLATRDATEMGELYSWLGLSVGINLAAKS-----SSEKRE 166
Cdd:TIGR03714 82 LHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPdeeydANEKRK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 167 AYNCDITYSTNAEIGFDYLRDNMVVRKENMVQRPLNFALVDEVDSVLIDEARTPLIVSGPVSTETNqLYHRADSFVKTLS 246
Cdd:TIGR03714 162 IYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSN-LYHIADTFVRTLK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 247 ED-DYAIDTPTKTIGLKDSGIDKAEEYFHLENLYDIDNVALTHYIDNALRANYIMLLDIDYVVSEeQEILIVDQFTGRTM 325
Cdd:TIGR03714 241 EDvDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTN-GEVVLLDRITGRLL 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 326 EGRRFSDGLHQAIEAKEGVPIQDESKTSASITYQNMFRMYKKLAGMTGTAKTEEEEFREIYNMRIIPIPTNRPVARIDHQ 405
Cdd:TIGR03714 320 EGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYP 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 406 DLLYPTLEAKFRAVVADVKERHEKGQPVLVGTVAVETSDLISKMLVQAGVPHEVLNAKNHFKEAQIIMNAGQRGAVTIAT 485
Cdd:TIGR03714 400 DKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKGAVTVAT 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 486 NMAGRGTDIKLGEGVRELGGLCVIGTERHESRRIDNQLRGRSGRQGDPGESQFYLSLEDELMRRFGSERIKAFLDRFIEE 565
Cdd:TIGR03714 480 SMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVDLQLRGRSGRQGDPGSSQFFVSLEDDLIKRWSPSWLKKYYKKYSVK 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 566 DN---DVVIKSRMLTNQVESAQRRVEGNNYDTRKQVLQYDDVMREQREIIYAERYDVITAERDLAPEIKAIIKRTIERTV 642
Cdd:TIGR03714 560 DSklkPSALFKRRFRKIVEKAQRASEDKGESAREQTNEFEESLSIQRENIYAERNRLIEGSDFLDDDVDQIIDDVFNMYA 639
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 643 DSHSqldrKESLDAILNFAKTNL---LPEDTISLhDIEdlNYEDIKDLLYDAALKNYDRQIAKLRDEEAVREFQKVLILM 719
Cdd:TIGR03714 640 EEQD----LSNKSLLKRFILENLsyqFKNDPDEF-DLK--NKEAIKDFLKEIADKELSEKKKVLNNDYLFNDFERLSILK 712
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 81845199 720 VVDNKWTDHIDALDQLRSSVGLRGYAQNNPIVEYQSEGFRMFQDM 764
Cdd:TIGR03714 713 AIDENWIEQVDYLQQLKTVVTNRQNGQRNPIFEYHKEALESYEYM 757
|
|
| secA |
PRK12901 |
preprotein translocase subunit SecA; Reviewed |
15-838 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237256 [Multi-domain] Cd Length: 1112 Bit Score: 836.60 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 15 EVRKLTKIAKKVEGYANEMEALSDEELQAKTDEFK------------------------------------------ERY 52
Cdd:PRK12901 16 DLKEIQPIVEKIKAEYPELEALSNDELRAKTDEFKqyikeavadidakieelkaeaiesldiderediyaqidklekEAY 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 53 QNGE-TLDDLLPEAFAVVREASKRVLG---------------------------------------------LYPYRVQI 86
Cdd:PRK12901 96 EILEkVLDEILPEAFAIVKETARRFAEneeievtatdfdrelaatkdfvtiegdkaiwknhwdaggneitwdMVHYDVQL 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 87 MGGVVLHHGDVPEMRTGEGKTLTATMPVYLNALAGEGVHVVTVNEYLATRDATEMGELYSWLGLSVG-INLAAKSSSEKR 165
Cdd:PRK12901 176 IGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDcIDKHQPNSEARR 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 166 EAYNCDITYSTNAEIGFDYLRDNMVVRKENMVQRPLNFALVDEVDSVLIDEARTPLIVSGPVSTETNQLY---------- 235
Cdd:PRK12901 256 KAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLIDDARTPLIISGPVPKGDDQEFeelkprverl 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 236 ----------------------------------HRA----DSFVKTLSE-------------------------DD--- 249
Cdd:PRK12901 336 veaqrklatqflaeakkliaegdkkegglallraYRGlpknKALIKFLSEegikallqktenfymqdnnrempevDEely 415
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 250 YAIDTPTKTIGLKDSGI----------------DKAEEYFHLENLYDIDNVAL-----------------THYIDNALRA 296
Cdd:PRK12901 416 FVIDEKNNSVELTDKGIdyitgndedpdffvlpDIGTELAEIENEGGLDEEEEaekkeelfqdysvkserVHTLNQLLKA 495
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 297 NYIMLLDIDYVVsEEQEILIVDQFTGRTMEGRRFSDGLHQAIEAKEGVPIQDESKTSASITYQNMFRMYKKLAGMTGTAK 376
Cdd:PRK12901 496 YTLFEKDDEYVV-MDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNYFRMYHKLAGMTGTAE 574
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 377 TEEEEFREIYNMRIIPIPTNRPVARIDHQDLLYPTLEAKFRAVVADVKERHEKGQPVLVGTVAVETSDLISKMLVQAGVP 456
Cdd:PRK12901 575 TEAGEFWDIYKLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIP 654
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 457 HEVLNAKNHFKEAQIIMNAGQRGAVTIATNMAGRGTDIKLGEGVRELGGLCVIGTERHESRRIDNQLRGRSGRQGDPGES 536
Cdd:PRK12901 655 HNVLNAKLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSS 734
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 537 QFYLSLEDELMRRFGSERIKAFLDRFIEEDNDvVIKSRMLTNQVESAQRRVEGNNYDTRKQVLQYDDVMREQREIIYAER 616
Cdd:PRK12901 735 QFYVSLEDNLMRLFGSERIAKVMDRMGLKEGE-VIQHSMISKSIERAQKKVEENNFGIRKRLLEYDDVMNSQREVIYKRR 813
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 617 YDVITAERdLAPEIKAIIKRTIERTVDSHSQLDRKESL--DAILNFAKtnllpEDTISLHDIEDLNYEDIKDLLYDAALK 694
Cdd:PRK12901 814 RHALMGER-LGMDIANMIYDVCEAIVENNKVANDYKGFkfELIRTLAM-----ESPITEEEFNKLKKDELTDKLYDAALE 887
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 695 NYDRQIAKLRD---------------------------------------------EEAVREFQKVLILMVVDNKWTDHI 729
Cdd:PRK12901 888 NYQRKMERIAEiafpvikqvyeeqgnmyerivvpftdgkrtlnvvtnlkeayetegKEIVKDFEKNITLHIIDEAWKEHL 967
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 730 DALDQLRSSVGLRGYAQNNPIVEYQSEGFRMFQDMIGAIEFDVTRTMMKAQIHEQ----------EREKETESRTTAEQ- 798
Cdd:PRK12901 968 REMDELKQSVQNASYEQKDPLLIYKFESFELFKNMVDKVNREVISFLFKGEIPVQeapeireaapERRLDPKYRTQKEEi 1047
|
1050 1060 1070 1080 1090
....*....|....*....|....*....|....*....|....*....|....*
gi 81845199 799 ----NISAQSTISPQDPI------FKNVGRNDKCPC-----GSGKKFKNCHGRKR 838
Cdd:PRK12901 1048 qdsdQRAAASRDTGAQVKetpvrvEKKIGRNDPVPCqnvdgGSGKKYKFKHAENL 1102
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
11-383 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 697.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 11 NDKgEVRKLTKIAKKVEGYANEMEALSDEELQAKTDEFKERYQNGETLDDLLPEAFAVVREASKRVLGLYPYRVQIMGGV 90
Cdd:smart00957 9 NDR-ELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFDVQLIGGI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 91 VLHHGDVPEMRTGEGKTLTATMPVYLNALAGEGVHVVTVNEYLATRDATEMGELYSWLGLSVGINLAAKSSSEKREAYNC 170
Cdd:smart00957 88 VLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSPEERRAAYAA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 171 DITYSTNAEIGFDYLRDNMVVRKENMVQRPLNFALVDEVDSVLIDEARTPLIVSGPVSTETNQLYHRADSFVKTLSED-D 249
Cdd:smart00957 168 DITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDESSDLYHRADKFVPRLKEDeD 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 250 YAIDTPTKTIGLKDSGIDKAEEYFHLENLYDIDNVALTHYIDNALRANYIMLLDIDYVVSEEqEILIVDQFTGRTMEGRR 329
Cdd:smart00957 248 YTVDEKSRTVELTEEGIEKAEKLLGIDNLYDPENIELLHHVNQALRAHYLFKRDVDYIVRDG-EVVIVDEFTGRVMEGRR 326
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 81845199 330 FSDGLHQAIEAKEGVPIQDESKTSASITYQNMFRMYKKLAGMTGTAKTEEEEFR 383
Cdd:smart00957 327 YSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEFR 380
|
|
| secA |
PRK12898 |
preprotein translocase subunit SecA; Reviewed |
16-602 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237253 [Multi-domain] Cd Length: 656 Bit Score: 658.24 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 16 VRKLTKIAKKVEGYANEMEALSDEELQAKTDEFKERYQNGETLDD-LLPEAFAVVREASKRVLGLYPYRVQIMGGVVLHH 94
Cdd:PRK12898 38 ARRQRLLADRVLAAAEALAGLSEEALRARSLALRARLRARDGFRDaLLAEAFALVREASGRVLGQRHFDVQLMGGLALLS 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 95 GDVPEMRTGEGKTLTATMPVYLNALAGEGVHVVTVNEYLATRDATEMGELYSWLGLSVGINLAAKSSSEKREAYNCDITY 174
Cdd:PRK12898 118 GRLAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAYGADITY 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 175 STNAEIGFDYLRDNMVV-------------------RKENMVQRPLNFALVDEVDSVLIDEARTPLIVSGPVSTETN-QL 234
Cdd:PRK12898 198 CTNKELVFDYLRDRLALgqrasdarlaleslhgrssRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEaEV 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 235 YHRADSFVKTLSED-DYAIDTPTKTIGLKDSGIDKAEEYFHLENLYDIDNVALTHYIDNALRANYIMLLDIDYVVSEEqE 313
Cdd:PRK12898 278 YRQALELAAQLKEGeDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDG-K 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 314 ILIVDQFTGRTMEGRRFSDGLHQAIEAKEGVPIQDESKTSASITYQNMFRMYKKLAGMTGTAKTEEEEFREIYNMRIIPI 393
Cdd:PRK12898 357 VVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRI 436
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 394 PTNRPVARIDHQDLLYPTLEAKFRAVVADVKERHEKGQPVLVGTVAVETSDLISKMLVQAGVPHEVLNAKNHFKEAQIIM 473
Cdd:PRK12898 437 PTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAAIVA 516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 474 NAGQRGAVTIATNMAGRGTDIKLGEGVRELGGLCVIGTERHESRRIDNQLRGRSGRQGDPGESQFYLSLEDELMRRFGSE 553
Cdd:PRK12898 517 RAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDLLQSFLGS 596
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|
gi 81845199 554 RIKAfLDRFIEEDNdvvIKSRMLTNQ-VESAQRRVEGNNYDTRKQVLQYD 602
Cdd:PRK12898 597 RGLA-IRRMELLGP---RGGRALGALlLRRAQRRAERLHARARRALLHAD 642
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
15-383 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 643.01 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 15 EVRKLTKIAKKVEGYANEMEALSDEELQAKTDEFKERYQNGETLDDLLPEAFAVVREASKRVLGLYPYRVQIMGGVVLHH 94
Cdd:pfam07517 12 DLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYDVQLIGGLVLHE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 95 GDVPEMRTGEGKTLTATMPVYLNALAGEGVHVVTVNEYLATRDATEMGELYSWLGLSVGINLAAKSSSEKREAYNCDITY 174
Cdd:pfam07517 92 GKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDPEERRAAYNADITY 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 175 STNAEIGFDYLRDNMVVRKENMVQRPLNFALVDEVDSVLIDEARTPLIVSGPVSTETNqLYHRADSFVKTLSED-DYAID 253
Cdd:pfam07517 172 GTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSE-LYREADRLVKSLEEDgDYEID 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 254 TPTKTIGLKDSGIDKAEEYFHLENLYDIDNVALTHYIDNALRANYIMLLDIDYVVSEEqEILIVDQFTGRTMEGRRFSDG 333
Cdd:pfam07517 251 EKSKNVELTEKGIEKIEKLLGIDNLYDPENVELLHHINQALKAHHLFKRDVDYIVRDG-EVVIVDEFTGRVMPGRRWSDG 329
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 81845199 334 LHQAIEAKEGVPIQDESKTSASITYQNMFRMYKKLAGMTGTAKTEEEEFR 383
Cdd:pfam07517 330 LHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEFR 379
|
|
| SecA2_Mycobac |
TIGR04221 |
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the ... |
17-785 |
4.72e-172 |
|
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the SecA2 subunit of the Mycobacterial type of accessory secretory system. This family is quite different SecA2 of the Staph/Strep type (TIGR03714).
Pssm-ID: 275062 [Multi-domain] Cd Length: 762 Bit Score: 515.92 E-value: 4.72e-172
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 17 RKLTKIAKKVEGYANEMEALSDEELqakTDEFKERYQNGETLDdlLPEAFAVVREASKRVLGLYPYRVQIMGGVVLHHGD 96
Cdd:TIGR04221 18 KRSLAIVPAAASRMKELSALDDEEL---TKAARDLVLSGEAAD--AAQFLAILREAAERTLGMRPFDVQLLGALRLLAGD 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 97 VPEMRTGEGKTLTATMPVYLNALAGEGVHVVTVNEYLATRDATEMGELYSWLGLSVGINLAAKSSSEKREAYNCDITYST 176
Cdd:TIGR04221 93 VIEMATGEGKTLAGAMAATGFALLGKRVHVVTVNDYLARRDAEWMGPLVDFFGLTVGWVTEDSTPDERRAAYACDVTYAS 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 177 NAEIGFDYLRDNMVVRKENMVQRPLNFALVDEVDSVLIDEARTPLIVSGPVSTEtnQLYHRADSFVKTLSED-DYAIDTP 255
Cdd:TIGR04221 173 VNEIGFDVLRDQLVTDRADLVQPAADVALIDEADSVLVDEALVPLVLAGNEPGE--APRGRITDLVRRLREDkHYTVDED 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 256 TKTIGLKDSGIDKAEEYFHLENLYDIDNVALT-HYIDNALRANYIMLLDIDYVVSEEQEILIvDQFTGRTMEGRRFSDGL 334
Cdd:TIGR04221 251 GRNVHLTEDGARAVEAELGIDDLYSEEHVGTTlVQVNVALHAHALLIRDVHYIVRDGKVALI-DASRGRVAQLQRWPDGL 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 335 HQAIEAKEGVPIQDESKTSASITYQNMFRMYKKLAGMTGTAKTEEEEFREIYNMRIIPIPTNRPVARIDHQDLLYPTLEA 414
Cdd:TIGR04221 330 QAAVEAKEGLEVTEGGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNTPNIRFDEADRVYATAAE 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 415 KFRAVVADVKERHEKGQPVLVGTVAVETSDLISKMLVQAGVPHEVLNAKNHFKEAQIIMNAGQRGAVTIATNMAGRGTDI 494
Cdd:TIGR04221 410 KNDAIVEEIAEVHKTGQPVLVGTQDVAESEELAEALLEAGVPCNVLNAKNDAEEAAIIAEAGDIGAVTVSTQMAGRGTDI 489
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 495 KLG-------EGVRELGGLCVIGTERHESRRIDNQLRGRSGRQGDPGESQFYLSLEDELMRRFGS-ERIKAfldrfiEED 566
Cdd:TIGR04221 490 RLGgsdeadhDRVAELGGLHVIGTGRHRTARLDNQLRGRAGRQGDPGSSVFFVSLEDDVVAVGGAgETVPA------QPA 563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 567 NDVVIKSRMLTNQVESAQRRVEGNNYDTRKQVLQYDDVMREQREIIYAER---YDVITAERDLApeikaiikrtiERTVD 643
Cdd:TIGR04221 564 EDGRIESPRVQDFVDHAQRVAEGQLLEIHANTWRYNQLIAQQRDIIDERRetlLDTDTAWQELS-----------ERAAD 632
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 644 SHSQLDRKesldailnfaktnlLPEDTIslhdiedlnyedikdllydaalknydrqiaklrdEEAVREfqkvLILMVVDN 723
Cdd:TIGR04221 633 RAAELKKE--------------VSEDAL----------------------------------ERAARE----IMLYHLDR 660
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81845199 724 KWTDHIDALDQLRSSVGLRGYAQNNPIVEYQSEGFRMFQDMIGAIEFDVTRTMMKAQIHEQE 785
Cdd:TIGR04221 661 GWAEHLAYLDDVRESIHLRALGRETPLDEFHRMAVRAFKELAQRAVDKAVETFEEVEIDADG 722
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
40-395 |
1.22e-128 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 384.19 E-value: 1.22e-128
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 40 ELQAKTDEFKERYQNGETLDDLLPEAFAVVREASKRVLGLYPYRVQIMGGVVLHHGDVPEMRTGEGKTLTATMPVYLNAL 119
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 120 AGEGVHVVTVNEYLATRDATEMGELYSWLGLSVGINLAAKSSSEKREAYNCDITYSTNAEIGFDYLRDNMVVRKENMVQR 199
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 200 PLNFALVDEVDSVLIDEARTPLIVSGpvstetnqlyhradsfvktlseddyaidtptktiglkdsgidkaeeyfhlenly 279
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 280 didnvalthyidnalranyimlldidyvvseeqeilivdqftgrtmegrrfsdglhqaieakegvpiqdeskTSASITYQ 359
Cdd:cd17928 187 ------------------------------------------------------------------------TLATITFQ 194
|
330 340 350
....*....|....*....|....*....|....*.
gi 81845199 360 NMFRMYKKLAGMTGTAKTEEEEFREIYNMRIIPIPT 395
Cdd:cd17928 195 NYFRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| SF2_C_secA |
cd18803 |
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the ... |
401-541 |
1.08e-86 |
|
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA is a DEAD-like helicase belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350190 [Multi-domain] Cd Length: 141 Bit Score: 271.35 E-value: 1.08e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 401 RIDHQDLLYPTLEAKFRAVVADVKERHEKGQPVLVGTVAVETSDLISKMLVQAGVPHEVLNAKNHFKEAQIIMNAGQRGA 480
Cdd:cd18803 1 RKDLPDLVYKTEEEKWKAIVEEVKELHAKGQPVLVGTRSVEKSELLSALLKEEGIPHNVLNAKNHAREAEIIAEAGQKGA 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81845199 481 VTIATNMAGRGTDIKLGEGVRELGGLCVIGTERHESRRIDNQLRGRSGRQGDPGESQFYLS 541
Cdd:cd18803 81 VTIATNMAGRGTDIKLGGNVEELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLS 141
|
|
| SecA_SW |
pfam07516 |
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts ... |
570-780 |
5.85e-81 |
|
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This family is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.
Pssm-ID: 462189 [Multi-domain] Cd Length: 213 Bit Score: 258.96 E-value: 5.85e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 570 VIKSRMLTNQVESAQRRVEGNNYDTRKQVLQYDDVMREQREIIYAERYDVITAErDLAPEIKAIIKRTIERTVDSHSQLD 649
Cdd:pfam07516 1 PIEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDDVMNQQREVIYAQRREILEGE-DLKEDILEMIEDVVDDIVDEYIPPE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 650 RKES---LDAILNFAKTNLLPEDTIS-LHDIEDLNYEDIKDLLYDAALKNYDRQIAKLrDEEAVREFQKVLILMVVDNKW 725
Cdd:pfam07516 80 ESPEewdLEGLKEALNEIFGLELPISeWEEEEDLDKEELKERLLEAAEEAYEEKEEEI-GPELMRELERVVLLQVIDSKW 158
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 81845199 726 TDHIDALDQLRSSVGLRGYAQNNPIVEYQSEGFRMFQDMIGAIEFDVTRTMMKAQ 780
Cdd:pfam07516 159 KEHLDAMDQLRQGIGLRAYGQKDPLVEYKREGFELFEEMLDAIREEVVRYLFRVQ 213
|
|
| SecA_PP_bind |
pfam01043 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
230-339 |
9.57e-48 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 460039 [Multi-domain] Cd Length: 110 Bit Score: 164.89 E-value: 9.57e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 230 ETNQLYHRADSFVKTLSED-DYAIDTPTKTIGLKDSGIDKAEEYFHLENLYDIDNVALTHYIDNALRANYIMLLDIDYVV 308
Cdd:pfam01043 1 KSTELYRQADKFVKQLKEDeDYEVDEKAKTVELTEEGIEKAEKLLGIDNLYDPENIELVHHINQALKAHHLFKRDVDYIV 80
|
90 100 110
....*....|....*....|....*....|.
gi 81845199 309 sEEQEILIVDQFTGRTMEGRRFSDGLHQAIE 339
Cdd:pfam01043 81 -KDGEVVIVDEFTGRLMPGRRYSDGLHQAIE 110
|
|
| SecA_PP_bind |
smart00958 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
230-339 |
3.78e-47 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 214938 [Multi-domain] Cd Length: 114 Bit Score: 163.39 E-value: 3.78e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 230 ETNQLYHRADSFVKTL--SEDDYAIDTPTKTIGLKDSGIDKAEEYFHLENLYDIDNVALTHYIDNALRANYIMLLDIDYV 307
Cdd:smart00958 4 DSSELYKRADELVPTLkkDEEDYEVDEKSRQVALTEEGIEKAEKLLGIDNLYDPENIELVHHVNQALRAHKLFKRDVDYI 83
|
90 100 110
....*....|....*....|....*....|..
gi 81845199 308 VSEEqEILIVDQFTGRTMEGRRFSDGLHQAIE 339
Cdd:smart00958 84 VRDG-EVVIVDEFTGRVMPGRRWSDGLHQAIE 114
|
|
| SF2-N |
cd00046 |
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily ... |
99-222 |
1.08e-13 |
|
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily 2 helicases comprise a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This N-terminal domain contains the ATP-binding region.
Pssm-ID: 350668 [Multi-domain] Cd Length: 146 Bit Score: 68.97 E-value: 1.08e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 99 EMRTGEGKTLTATMPVYLNAL-AGEGVHVVTVNEYLATRDATEMGELYSWlGLSVGINLAAKSSSEKREA--YNCDITYS 175
Cdd:cd00046 7 TAPTGSGKTLAALLAALLLLLkKGKKVLVLVPTKALALQTAERLRELFGP-GIRVAVLVGGSSAEEREKNklGDADIIIA 85
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 81845199 176 TNAEIGFDYLRDNMVvrkenmVQRPLNFALVDEVDSVLIDEARTPLI 222
Cdd:cd00046 86 TPDMLLNLLLREDRL------FLKDLKLIIVDEAHALLIDSRGALIL 126
|
|
| YecA |
COG3318 |
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ... |
814-837 |
1.61e-10 |
|
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];
Pssm-ID: 442547 [Multi-domain] Cd Length: 45 Bit Score: 56.83 E-value: 1.61e-10
10 20
....*....|....*....|....
gi 81845199 814 KNVGRNDKCPCGSGKKFKNCHGRK 837
Cdd:COG3318 22 PKVGRNDPCPCGSGKKYKKCCGAN 45
|
|
| DEAD-like_helicase_C |
cd09300 |
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases ... |
481-539 |
5.14e-10 |
|
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases is composed of two superfamilies, SF1 and SF2, that share almost identical folds and extensive structural similarity in their catalytic core. Helicases are involved in ATP-dependent RNA or DNA unwinding. Two distinct types of helicases exist, those forming toroidal, predominantly hexameric structures, and those that do not. SF1 and SF2 helicases do not form toroidal structures, while SF3-6 helicases do. Their conserved helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350171 [Multi-domain] Cd Length: 59 Bit Score: 55.63 E-value: 5.14e-10
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 81845199 481 VTIATNMAGRGTDIklgegvreLGGLCVIGTERHESRRIDNQLRGRSGRQGDPGESQFY 539
Cdd:cd09300 8 VLIAVN*ALTGFDA--------PELNTIIVDKNLRSYRGLNQAFGRANRIYTFGGIVTY 58
|
|
| SEC-C |
pfam02810 |
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ... |
818-836 |
2.89e-09 |
|
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.
Pssm-ID: 460704 [Multi-domain] Cd Length: 19 Bit Score: 52.87 E-value: 2.89e-09
|
| PRK05590 |
PRK05590 |
hypothetical protein; Provisional |
816-837 |
1.96e-08 |
|
hypothetical protein; Provisional
Pssm-ID: 235521 Cd Length: 166 Bit Score: 54.59 E-value: 1.96e-08
10 20
....*....|....*....|..
gi 81845199 816 VGRNDKCPCGSGKKFKNCHGRK 837
Cdd:PRK05590 145 VGRNDPCPCGSGKKYKKCCGKN 166
|
|
| PRK01617 |
PRK01617 |
hypothetical protein; Provisional |
816-836 |
2.72e-07 |
|
hypothetical protein; Provisional
Pssm-ID: 234966 Cd Length: 154 Bit Score: 50.80 E-value: 2.72e-07
|
| DEAD-like_helicase_N |
cd17912 |
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase ... |
99-137 |
1.73e-06 |
|
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase superfamily is a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. The N-terminal domain contains the ATP-binding region.
Pssm-ID: 350670 [Multi-domain] Cd Length: 81 Bit Score: 46.36 E-value: 1.73e-06
10 20 30
....*....|....*....|....*....|....*....
gi 81845199 99 EMRTGEGKTLTATMPVYLNALAGEGVHVVTVNEYLATRD 137
Cdd:cd17912 5 LGPTGSGKTLVAIQKIASAMSSGKSVLVVTPTKLLAHEI 43
|
|
| SWIM_PBPRA1643 |
TIGR04102 |
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ... |
778-835 |
3.50e-06 |
|
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.
Pssm-ID: 200353 [Multi-domain] Cd Length: 108 Bit Score: 46.53 E-value: 3.50e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81845199 778 KAQIHEQEREKETESRTTAEQNISAQSTI--SPQDPIF-KNVGRNDKCPCGSGKKFKNCHG 835
Cdd:TIGR04102 48 EAILAEHELFANIEVNADQEENIVELDGLlnKPKTTTFeKTPNRNDPCPCGSGKKYKKCCG 108
|
|
| PRK10396 |
PRK10396 |
hypothetical protein; Provisional |
803-833 |
4.59e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 236680 [Multi-domain] Cd Length: 221 Bit Score: 48.59 E-value: 4.59e-06
10 20 30
....*....|....*....|....*....|..
gi 81845199 803 QSTISPQDPIFKN-VGRNDKCPCGSGKKFKNC 833
Cdd:PRK10396 187 QEKAVQQPIKAEEkVGRNDPCPCGSGKKFKQC 218
|
|
| PRK00183 |
PRK00183 |
hypothetical protein; Provisional |
772-833 |
4.99e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 166842 Cd Length: 157 Bit Score: 47.10 E-value: 4.99e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 81845199 772 VTRTmmkAQIHEQEREKETESRTTAEQNISAQSTISPQDPIfkNVGRNDKCPCGSGKKFKNC 833
Cdd:PRK00183 95 VTFT---ARWHDADGEHSHRERSAFVQHQGRWYFIDPTVPL--KAGRNDPCPCGSGQKFKKC 151
|
|
| PRK02250 |
PRK02250 |
hypothetical protein; Provisional |
787-835 |
3.92e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 179393 [Multi-domain] Cd Length: 166 Bit Score: 44.87 E-value: 3.92e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 81845199 787 EKETESRTTAEQNISAqstispqdpifKNVGRNDKCPCGSGKKFKNCHG 835
Cdd:PRK02250 129 EEEPEQDPRLNQSVSS-----------LKQGRNDPCICGSGKKFKKCCG 166
|
|
| SF2_C |
cd18785 |
C-terminal helicase domain of superfamily 2 DEAD/H-box helicases; Superfamily (SF)2 helicases ... |
480-539 |
5.92e-05 |
|
C-terminal helicase domain of superfamily 2 DEAD/H-box helicases; Superfamily (SF)2 helicases include DEAD-box helicases, UvrB, RecG, Ski2, Sucrose Non-Fermenting (SNF) family helicases, and dicer proteins, among others. Similar to SF1 helicases, they do not form toroidal structures like SF3-6 helicases. SF2 helicases are a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Their helicase core is surrounded by C- and N-terminal domains with specific functions such as nucleases, RNA or DNA binding domains, or domains engaged in protein-protein interactions. The core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350172 [Multi-domain] Cd Length: 77 Bit Score: 41.92 E-value: 5.92e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81845199 480 AVTIATNMAGRGTDIklgegvreLGGLCVIGTERHESRRIDNQLRGRSGRQG-DPGESQFY 539
Cdd:cd18785 24 EILVATNVLGEGIDV--------PSLDTVIFFDPPSSAASYIQRVGRAGRGGkDEGEVILF 76
|
|
| HELICc |
smart00490 |
helicase superfamily c-terminal domain; |
444-531 |
9.60e-04 |
|
helicase superfamily c-terminal domain;
Pssm-ID: 197757 [Multi-domain] Cd Length: 82 Bit Score: 38.73 E-value: 9.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 444 DLISKMLVQAGVPHEVLNAKNHFKEAQIIMNAGQRGAVTI--ATNMAGRGTDIKlgeGVRelgglCVIGTERHESRRIDN 521
Cdd:smart00490 1 EELAELLKELGIKVARLHGGLSQEEREEILDKFNNGKIKVlvATDVAERGLDLP---GVD-----LVIIYDLPWSPASYI 72
|
90
....*....|
gi 81845199 522 QLRGRSGRQG 531
Cdd:smart00490 73 QRIGRAGRAG 82
|
|
| SF2_C_DEAD |
cd18787 |
C-terminal helicase domain of the DEAD box helicases; DEAD-box helicases comprise a diverse ... |
404-495 |
3.22e-03 |
|
C-terminal helicase domain of the DEAD box helicases; DEAD-box helicases comprise a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis, and RNA degradation. They are superfamily (SF)2 helicases that, similar to SF1, do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350174 [Multi-domain] Cd Length: 131 Bit Score: 38.64 E-value: 3.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845199 404 HQDLLYPTLEAKFRAVVADVKERHEKGQpVLVGTVAVETSDLISKMLVQAGVPHEVLNAKNHFKEAQIIMNAGQRGAVTI 483
Cdd:cd18787 2 KQLYVVVEEEEKKLLLLLLLLEKLKPGK-AIIFVNTKKRVDRLAELLEELGIKVAALHGDLSQEERERALKKFRSGKVRV 80
|
90
....*....|....
gi 81845199 484 --ATNMAGRGTDIK 495
Cdd:cd18787 81 lvATDVAARGLDIP 94
|
|
| PRK12318 |
PRK12318 |
methionyl aminopeptidase; |
816-834 |
6.26e-03 |
|
methionyl aminopeptidase;
Pssm-ID: 183434 [Multi-domain] Cd Length: 291 Bit Score: 39.42 E-value: 6.26e-03
|
| |
