|
Name |
Accession |
Description |
Interval |
E-value |
| secA2 |
TIGR03714 |
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA ... |
10-770 |
0e+00 |
|
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 163426 [Multi-domain] Cd Length: 762 Bit Score: 1308.87 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 10 LDKKRLKKLQRTLNTINSLKGQMATLSNEELQAKTTEFRKRLVNGETLDDICAEAFAVVREADKRVLGLFPYDVQVIGGL 89
Cdd:TIGR03714 1 INNLRLKKLRKILNKINALKGKMATLSDEELQAKTAEFKNRLVEGESLDDILPEAYAVVREADKRVLGMFPYDVQVLGAI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 90 VLHQGNTAEMKTGEGKTLTATMPLYLNALEGKGAMLLTNNSYLAIRDAEEMGKVYRFLGLSVGVGVSDNEEEDRDAATKR 169
Cdd:TIGR03714 81 VLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 170 AVYSSDIVYSTSSALGFDYLIDNLASSKSQKYMPKLHYAIVDEADAVLLDMAQTPLVISGSPRVQSNLYKIADELILSFE 249
Cdd:TIGR03714 161 KIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 250 EQVDYYFDKERQEVWIKNQGVREAERYFRIPHFYKQSNRELVRHLNLSLKAHKLFERGKDYVVDDGEIKLLDATNGRVLE 329
Cdd:TIGR03714 241 EDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 330 GTKLQGGVHQAIEQKEHLNVTPESRAMASITYQNLFRMFTKLAGMTGTGKTAEKEFIEVYDMEVVRIPTNSPVRRIDYPD 409
Cdd:TIGR03714 321 GTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 410 KIYTTLPEKIHATIEFVKQVHDTGQPILLVAGSVRMSELFSELLLLSGIPHSLLNAQSAVKEAQMIAEAGQKGAVTVATN 489
Cdd:TIGR03714 401 KIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKGAVTVATS 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 490 MAGRGTDIKLGKGVSELGGLAVIGTERMKSQRMDLQLRGRSGRQGDIGFSQFFVSFEDDLMIESGPKWAQDYFRKNRDKV 569
Cdd:TIGR03714 481 MAGRGTDIKLGKGVAELGGLAVIGTERMENSRVDLQLRGRSGRQGDPGSSQFFVSLEDDLIKRWSPSWLKKYYKKYSVKD 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 570 NPEKPKALGQRRFQKLFQQTQEASDGKGESARSQTIEFDSSVQLQREYVYRERNALINGES-GHFSPRQIIDTVISSFIA 648
Cdd:TIGR03714 561 SKLKPSALFKRRFRKIVEKAQRASEDKGESAREQTNEFEESLSIQRENIYAERNRLIEGSDfLDDDVDQIIDDVFNMYAE 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 649 ylDGEVEKEELIFevnRFIFDNMSYNLQGISKEMSL---EEIKNYLFKIADEILREKHNLLGDS--FGDFERTAALKAID 723
Cdd:TIGR03714 641 --EQDLSNKSLLK---RFILENLSYQFKNDPDEFDLknkEAIKDFLKEIADKELSEKKKVLNNDylFNDFERLSILKAID 715
|
730 740 750 760
....*....|....*....|....*....|....*....|....*..
gi 81845585 724 EAWIEEVDYLQQLRTVATARQTAQRNPVFEYHKEAYKSYNIMKKEIR 770
Cdd:TIGR03714 716 ENWIEQVDYLQQLKTVVTNRQNGQRNPIFEYHKEALESYEYMKKEIK 762
|
|
| PRK09200 |
PRK09200 |
preprotein translocase subunit SecA; Reviewed |
3-795 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 236408 [Multi-domain] Cd Length: 790 Bit Score: 1231.73 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 3 AFNSLFSLDKKRLKKLQRTLNTINSLKGQMATLSNEELQAKTTEFRKRLVNGETLDDICAEAFAVVREADKRVLGLFPYD 82
Cdd:PRK09200 2 KKKLLGDIDKRRLKKYRKIVKQINKLEGKMSSLSDEELRQKTIEFKERLASGKTLDDILPEAFAVVREAAKRVLGMRPYD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 83 VQVIGGLVLHQGNTAEMKTGEGKTLTATMPLYLNALEGKGAMLLTNNSYLAIRDAEEMGKVYRFLGLSVGVGVSDNEeed 162
Cdd:PRK09200 82 VQLIGALVLHEGNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDID--- 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 163 rDAATKRAVYSSDIVYSTSSALGFDYLIDNLASSKSQKYMPKLHYAIVDEADAVLLDMAQTPLVISGSPRVQSNLYKIAD 242
Cdd:PRK09200 159 -DASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAA 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 243 ELILSFEEQVDYYFDKERQEVWIKNQGVREAERYFRIPHFYKQSNRELVRHLNLSLKAHKLFERGKDYVVDDGEIKLLDA 322
Cdd:PRK09200 238 KFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDR 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 323 TNGRVLEGTKLQGGVHQAIEQKEHLNVTPESRAMASITYQNLFRMFTKLAGMTGTGKTAEKEFIEVYDMEVVRIPTNSPV 402
Cdd:PRK09200 318 FTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRPI 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 403 RRIDYPDKIYTTLPEKIHATIEFVKQVHDTGQPILLVAGSVRMSELFSELLLLSGIPHSLLNAQSAVKEAQMIAEAGQKG 482
Cdd:PRK09200 398 IRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 483 AVTVATNMAGRGTDIKLGKGVSELGGLAVIGTERMKSQRMDLQLRGRSGRQGDIGFSQFFVSFEDDLMIESGPKWAQDYF 562
Cdd:PRK09200 478 AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFAPEELEKLK 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 563 RKNRDKVNPeKPKALGQRRFQKLFQQTQEASDGKGESARSQTIEFDSSVQLQREYVYRERNALINGESghfspRQIIDTV 642
Cdd:PRK09200 558 KKLKTDAQR-LTGLLFNRKVHKIVVKAQRISEGAGYSAREYALELDDVINIQRDVVYKERNRLLEEDD-----RDLIDIV 631
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 643 ISSFIAYLDGEVEK---EELIFEvnRFIFDNMSYNLQGISKEMSL---EEIKNYLFKIADEILREKHNLLGDS--FGDFE 714
Cdd:PRK09200 632 ILMIDVYLEAVAEEyllEKSLLE--EWIYENLSFQLNEILSNTNFpdkKEVVQFLLEEAEKQLKEKRNKLPSAtlYNQFL 709
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 715 RTAALKAIDEAWIEEVDYLQQLRTVATARQTAQRNPVFEYHKEAYKSYNIMKKEIREQTFRNLLLSEVSFNENGDLQIYF 794
Cdd:PRK09200 710 RKVALKAIDQNWVEQVDALQQLKEGIGLRQYGQRNPIREYQKEALESFEYMYENIKKDMVRNLLLSLLVFDKEGEIVIHF 789
|
.
gi 81845585 795 I 795
Cdd:PRK09200 790 P 790
|
|
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
1-786 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 793.85 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 1 MTAFNSLF-SLDKKRLKKLQRTLNTINSLKGQMATLSNEELQAKTTEFRKRLVNGETLDDICAEAFAVVREADKRVLGLF 79
Cdd:COG0653 2 GKLLKKIFgSRNDRELKRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKRVLGMR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 80 PYDVQVIGGLVLHQGNTAEMKTGEGKTLTATMPLYLNALEGKGAMLLTNNSYLAIRDAEEMGKVYRFLGLSVGVGVSDNE 159
Cdd:COG0653 82 HFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHGMD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 160 EEDRdaatkRAVYSSDIVYSTSSALGFDYLIDNLASSKSQKYMPKLHYAIVDEADAVLLDMAQTPLVISGSPRVQSNLYK 239
Cdd:COG0653 162 PEER-----RAAYAADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYY 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 240 IADELILSFEEQVDYYFD-KERQeVWIKNQGVREAERYFRIPHFYKQSNRELVRHLNLSLKAHKLFERGKDYVVDDGEIK 318
Cdd:COG0653 237 RINKLVPRLKRDGDYTVDeKART-VTLTEEGIEKVEKLLGIDNLYDPENIELVHHLNQALRAHALFKRDVDYIVKDGEVV 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 319 LLDATNGRVLEGTKLQGGVHQAIEQKEHLNVTPESRAMASITYQNLFRMFTKLAGMTGTGKTAEKEFIEVYDMEVVRIPT 398
Cdd:COG0653 316 IVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYGLDVVVIPT 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 399 NSPVRRIDYPDKIYTTLPEKIHATIEFVKQVHDTGQPILLVAGSV-------RMselfselLLLSGIPHSLLNAQSAVKE 471
Cdd:COG0653 396 NRPMIRKDEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIeksellsKL-------LKKEGIPHNVLNAKQHERE 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 472 AQMIAEAGQKGAVTVATNMAGRGTDIKLG---------------------------------KGVSELGGLAVIGTERMK 518
Cdd:COG0653 469 AEIVAQAGRPGAVTIATNMAGRGTDIVLGgnpeflaaaeladrgleweeaiakikaewqaehEEVLEAGGLHVIGTERHE 548
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 519 SQRMDLQLRGRSGRQGDIGFSQFFVSFEDDLM----------------------IESgpKWaqdyfrknrdkVNpekpKA 576
Cdd:COG0653 549 SRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMrifgsdrikgmmdklgmeegepIEH--KM-----------VS----KA 611
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 577 LgqRRFQKlfqqtqeasdgKGES----ARSQTIEFDSSVQLQREYVYRERNALINGESGHFSPRQIIDTVISSFIA-YLD 651
Cdd:COG0653 612 I--ENAQK-----------KVEGrnfdIRKNLLEYDDVMNDQRKVIYEQRREILEGEDLSETILDMREDVIEDLVDeYIP 678
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 652 GEVEKEE-----LIFEVNRFIfdNMSYNLQGISKE--MSLEEIKNYLFKIADEILREKHNLLG-DSFGDFERTAALKAID 723
Cdd:COG0653 679 EGSYPEQwdlegLEEALKELF--GLDLPIEEWLDEegLDEEELRERLLEAADEAYEEKEEELGpEVMRELERVVLLQVLD 756
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81845585 724 EAWIEEVDYLQQLRTVATARQTAQRNPVFEYHKEAYKSYNIMKKEIREQTFRNLLLSEVSFNE 786
Cdd:COG0653 757 RKWREHLDAMDHLRQGIGLRGYAQKDPLVEYKREAFELFEEMLDSIKEEVVRYLFRVQVRSEE 819
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
4-385 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 601.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 4 FNSLFSLDKKR-LKKLQRTLNTINSLKGQMATLSNEELQAKTTEFRKRLVNGETLDDICAEAFAVVREADKRVLGLFPYD 82
Cdd:smart00957 1 LKKLFGSKNDReLKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 83 VQVIGGLVLHQGNTAEMKTGEGKTLTATMPLYLNALEGKGAMLLTNNSYLAIRDAEEMGKVYRFLGLSVGVGVSdneeeD 162
Cdd:smart00957 81 VQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVS-----G 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 163 RDAATKRAVYSSDIVYSTSSALGFDYLIDNLASSKSQKYMPKLHYAIVDEADAVLLDMAQTPLVISG-SPRVQSNLYKIA 241
Cdd:smart00957 156 MSPEERRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGpAEDESSDLYHRA 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 242 DELILSFEEQVDYYFDKERQEVWIKNQGVREAERYFRIPHFYKQSNRELVRHLNLSLKAHKLFERGKDYVVDDGEIKLLD 321
Cdd:smart00957 236 DKFVPRLKEDEDYTVDEKSRTVELTEEGIEKAEKLLGIDNLYDPENIELLHHVNQALRAHYLFKRDVDYIVRDGEVVIVD 315
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 81845585 322 ATNGRVLEGTKLQGGVHQAIEQKEHLNVTPESRAMASITYQNLFRMFTKLAGMTGTGKTAEKEF 385
Cdd:smart00957 316 EFTGRVMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEF 379
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
9-385 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 583.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 9 SLDKKRLKKLQRTLNTINSLKGQMATLSNEELQAKTTEFRKRLVNGETLDDICAEAFAVVREADKRVLGLFPYDVQVIGG 88
Cdd:pfam07517 7 SPNERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYDVQLIGG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 89 LVLHQGNTAEMKTGEGKTLTATMPLYLNALEGKGAMLLTNNSYLAIRDAEEMGKVYRFLGLSVGVGVSDneeedRDAATK 168
Cdd:pfam07517 87 LVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSD-----MDPEER 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 169 RAVYSSDIVYSTSSALGFDYLIDNLASSKSQKYMPKLHYAIVDEADAVLLDMAQTPLVISGSPRVQSNLYKIADELILSF 248
Cdd:pfam07517 162 RAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREADRLVKSL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 249 EEQVDYYFDKERQEVWIKNQGVREAERYFRIPHFYKQSNRELVRHLNLSLKAHKLFERGKDYVVDDGEIKLLDATNGRVL 328
Cdd:pfam07517 242 EEDGDYEIDEKSKNVELTEKGIEKIEKLLGIDNLYDPENVELLHHINQALKAHHLFKRDVDYIVRDGEVVIVDEFTGRVM 321
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 81845585 329 EGTKLQGGVHQAIEQKEHLNVTPESRAMASITYQNLFRMFTKLAGMTGTGKTAEKEF 385
Cdd:pfam07517 322 PGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEF 378
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
39-398 |
3.84e-111 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 337.58 E-value: 3.84e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 39 ELQAKTTEFRKRLVNGETLDDICAEAFAVVREADKRVLGLFPYDVQVIGGLVLHQGNTAEMKTGEGKTLTATMPLYLNAL 118
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 119 EGKGAMLLTNNSYLAIRDAEEMGKVYRFLGLSVGVGVSDNEEEDRdaatkRAVYSSDIVYSTSSALGFDYLIDNLASSKS 198
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDER-----REAYAADITYGTNNELGFDYLRDNMVTSKE 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 199 QKYMPKLHYAIVDEADAVLLDMAQTPLVISGSprvqsnlykiadelilsfeeqvdyyfdkerqevwiknqgvreaeryfr 278
Cdd:cd17928 156 DLVQRGLNFAIVDEVDSILIDEARTPLIISGT------------------------------------------------ 187
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 279 iphfykqsnrelvrhlnlslkahklfergkdyvvddgeiklldatngrvlegtklqggvhqaieqkehlnvtpesraMAS 358
Cdd:cd17928 188 -----------------------------------------------------------------------------LAT 190
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 81845585 359 ITYQNLFRMFTKLAGMTGTGKTAEKEFIEVYDMEVVRIPT 398
Cdd:cd17928 191 ITFQNYFRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| secA2 |
TIGR03714 |
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA ... |
10-770 |
0e+00 |
|
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 163426 [Multi-domain] Cd Length: 762 Bit Score: 1308.87 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 10 LDKKRLKKLQRTLNTINSLKGQMATLSNEELQAKTTEFRKRLVNGETLDDICAEAFAVVREADKRVLGLFPYDVQVIGGL 89
Cdd:TIGR03714 1 INNLRLKKLRKILNKINALKGKMATLSDEELQAKTAEFKNRLVEGESLDDILPEAYAVVREADKRVLGMFPYDVQVLGAI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 90 VLHQGNTAEMKTGEGKTLTATMPLYLNALEGKGAMLLTNNSYLAIRDAEEMGKVYRFLGLSVGVGVSDNEEEDRDAATKR 169
Cdd:TIGR03714 81 VLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 170 AVYSSDIVYSTSSALGFDYLIDNLASSKSQKYMPKLHYAIVDEADAVLLDMAQTPLVISGSPRVQSNLYKIADELILSFE 249
Cdd:TIGR03714 161 KIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 250 EQVDYYFDKERQEVWIKNQGVREAERYFRIPHFYKQSNRELVRHLNLSLKAHKLFERGKDYVVDDGEIKLLDATNGRVLE 329
Cdd:TIGR03714 241 EDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 330 GTKLQGGVHQAIEQKEHLNVTPESRAMASITYQNLFRMFTKLAGMTGTGKTAEKEFIEVYDMEVVRIPTNSPVRRIDYPD 409
Cdd:TIGR03714 321 GTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPD 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 410 KIYTTLPEKIHATIEFVKQVHDTGQPILLVAGSVRMSELFSELLLLSGIPHSLLNAQSAVKEAQMIAEAGQKGAVTVATN 489
Cdd:TIGR03714 401 KIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKGAVTVATS 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 490 MAGRGTDIKLGKGVSELGGLAVIGTERMKSQRMDLQLRGRSGRQGDIGFSQFFVSFEDDLMIESGPKWAQDYFRKNRDKV 569
Cdd:TIGR03714 481 MAGRGTDIKLGKGVAELGGLAVIGTERMENSRVDLQLRGRSGRQGDPGSSQFFVSLEDDLIKRWSPSWLKKYYKKYSVKD 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 570 NPEKPKALGQRRFQKLFQQTQEASDGKGESARSQTIEFDSSVQLQREYVYRERNALINGES-GHFSPRQIIDTVISSFIA 648
Cdd:TIGR03714 561 SKLKPSALFKRRFRKIVEKAQRASEDKGESAREQTNEFEESLSIQRENIYAERNRLIEGSDfLDDDVDQIIDDVFNMYAE 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 649 ylDGEVEKEELIFevnRFIFDNMSYNLQGISKEMSL---EEIKNYLFKIADEILREKHNLLGDS--FGDFERTAALKAID 723
Cdd:TIGR03714 641 --EQDLSNKSLLK---RFILENLSYQFKNDPDEFDLknkEAIKDFLKEIADKELSEKKKVLNNDylFNDFERLSILKAID 715
|
730 740 750 760
....*....|....*....|....*....|....*....|....*..
gi 81845585 724 EAWIEEVDYLQQLRTVATARQTAQRNPVFEYHKEAYKSYNIMKKEIR 770
Cdd:TIGR03714 716 ENWIEQVDYLQQLKTVVTNRQNGQRNPIFEYHKEALESYEYMKKEIK 762
|
|
| PRK09200 |
PRK09200 |
preprotein translocase subunit SecA; Reviewed |
3-795 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 236408 [Multi-domain] Cd Length: 790 Bit Score: 1231.73 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 3 AFNSLFSLDKKRLKKLQRTLNTINSLKGQMATLSNEELQAKTTEFRKRLVNGETLDDICAEAFAVVREADKRVLGLFPYD 82
Cdd:PRK09200 2 KKKLLGDIDKRRLKKYRKIVKQINKLEGKMSSLSDEELRQKTIEFKERLASGKTLDDILPEAFAVVREAAKRVLGMRPYD 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 83 VQVIGGLVLHQGNTAEMKTGEGKTLTATMPLYLNALEGKGAMLLTNNSYLAIRDAEEMGKVYRFLGLSVGVGVSDNEeed 162
Cdd:PRK09200 82 VQLIGALVLHEGNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDID--- 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 163 rDAATKRAVYSSDIVYSTSSALGFDYLIDNLASSKSQKYMPKLHYAIVDEADAVLLDMAQTPLVISGSPRVQSNLYKIAD 242
Cdd:PRK09200 159 -DASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAA 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 243 ELILSFEEQVDYYFDKERQEVWIKNQGVREAERYFRIPHFYKQSNRELVRHLNLSLKAHKLFERGKDYVVDDGEIKLLDA 322
Cdd:PRK09200 238 KFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDR 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 323 TNGRVLEGTKLQGGVHQAIEQKEHLNVTPESRAMASITYQNLFRMFTKLAGMTGTGKTAEKEFIEVYDMEVVRIPTNSPV 402
Cdd:PRK09200 318 FTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTNRPI 397
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 403 RRIDYPDKIYTTLPEKIHATIEFVKQVHDTGQPILLVAGSVRMSELFSELLLLSGIPHSLLNAQSAVKEAQMIAEAGQKG 482
Cdd:PRK09200 398 IRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG 477
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 483 AVTVATNMAGRGTDIKLGKGVSELGGLAVIGTERMKSQRMDLQLRGRSGRQGDIGFSQFFVSFEDDLMIESGPKWAQDYF 562
Cdd:PRK09200 478 AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDLLKRFAPEELEKLK 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 563 RKNRDKVNPeKPKALGQRRFQKLFQQTQEASDGKGESARSQTIEFDSSVQLQREYVYRERNALINGESghfspRQIIDTV 642
Cdd:PRK09200 558 KKLKTDAQR-LTGLLFNRKVHKIVVKAQRISEGAGYSAREYALELDDVINIQRDVVYKERNRLLEEDD-----RDLIDIV 631
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 643 ISSFIAYLDGEVEK---EELIFEvnRFIFDNMSYNLQGISKEMSL---EEIKNYLFKIADEILREKHNLLGDS--FGDFE 714
Cdd:PRK09200 632 ILMIDVYLEAVAEEyllEKSLLE--EWIYENLSFQLNEILSNTNFpdkKEVVQFLLEEAEKQLKEKRNKLPSAtlYNQFL 709
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 715 RTAALKAIDEAWIEEVDYLQQLRTVATARQTAQRNPVFEYHKEAYKSYNIMKKEIREQTFRNLLLSEVSFNENGDLQIYF 794
Cdd:PRK09200 710 RKVALKAIDQNWVEQVDALQQLKEGIGLRQYGQRNPIREYQKEALESFEYMYENIKKDMVRNLLLSLLVFDKEGEIVIHF 789
|
.
gi 81845585 795 I 795
Cdd:PRK09200 790 P 790
|
|
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
1-782 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 805.46 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 1 MTAFNSLF-SLDKKRLKKLQRTLNTINSLKGQMATLSNEELQAKTTEFRKRLVNGETLDDICAEAFAVVREADKRVLGLF 79
Cdd:PRK12904 2 LGLLKKIFgSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVLGMR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 80 PYDVQVIGGLVLHQGNTAEMKTGEGKTLTATMPLYLNALEGKGAMLLTNNSYLAIRDAEEMGKVYRFLGLSVGVGVSDNE 159
Cdd:PRK12904 82 HFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMS 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 160 EEDRdaatkRAVYSSDIVYSTSSALGFDYLIDNLASSKSQKYMPKLHYAIVDEADAVLLDMAQTPLVISGSPRVQSNLYK 239
Cdd:PRK12904 162 PEER-----REAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYK 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 240 IADELILSFEEQVDYYFD-KERQeVWIKNQGVREAERYFRIPHFYKQSNRELVRHLNLSLKAHKLFERGKDYVVDDGEIK 318
Cdd:PRK12904 237 RANKIVPTLEKEGDYTVDeKSRT-VGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVV 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 319 LLDATNGRVLEGTKLQGGVHQAIEQKEHLNVTPESRAMASITYQNLFRMFTKLAGMTGTGKTAEKEFIEVYDMEVVRIPT 398
Cdd:PRK12904 316 IVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPT 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 399 NSPVRRIDYPDKIYTTLPEKIHATIEFVKQVHDTGQPILLVAGSVRMSELFSELLLLSGIPHSLLNAQSAVKEAQMIAEA 478
Cdd:PRK12904 396 NRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAKNHEREAEIIAQA 475
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 479 GQKGAVTVATNMAGRGTDIKLG------------------------------KGVSELGGLAVIGTERMKSQRMDLQLRG 528
Cdd:PRK12904 476 GRPGAVTIATNMAGRGTDIKLGgnpemlaaalleeeteeqiakikaewqeehEEVLEAGGLHVIGTERHESRRIDNQLRG 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 529 RSGRQGDIGFSQFFVSFEDDLM----------------------IESgpKWaqdyfrknrdkVNpekpKALgqRRFQKlf 586
Cdd:PRK12904 556 RSGRQGDPGSSRFYLSLEDDLMrifgsdrvkgmmdrlgmkegeaIEH--KM-----------VT----RAI--ENAQK-- 614
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 587 qqtqeasdgKGES----ARSQTIEFDSSVQLQREYVYRERNALINGESGHFSPRQIIDTVISSFIA-YLDGEVEKEE--- 658
Cdd:PRK12904 615 ---------KVEGrnfdIRKQLLEYDDVMNDQRKVIYAQRNEILEGEDLSETILDMREDVIEDLVDaYIPPGSYEEDwdl 685
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 659 --LIFEVNRFIFDNMSYNlQGISKEMSLEEIKNYLFKIADEILREKHNLLG-DSFGDFERTAALKAIDEAWIEEVDYLQQ 735
Cdd:PRK12904 686 egLEEALKTDFGLELPIE-EWLEEGLDEEELRERILEAAEEAYEEKEEELGeEQMREFERVVMLQVLDTKWREHLAAMDH 764
|
810 820 830 840
....*....|....*....|....*....|....*....|....*..
gi 81845585 736 LRTVATARQTAQRNPVFEYHKEAYKSYNIMKKEIREQTFRNLLLSEV 782
Cdd:PRK12904 765 LRQGIGLRGYAQKDPLQEYKREGFELFEEMLDSIKEEVVRTLMKVQI 811
|
|
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
1-786 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 793.85 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 1 MTAFNSLF-SLDKKRLKKLQRTLNTINSLKGQMATLSNEELQAKTTEFRKRLVNGETLDDICAEAFAVVREADKRVLGLF 79
Cdd:COG0653 2 GKLLKKIFgSRNDRELKRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKRVLGMR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 80 PYDVQVIGGLVLHQGNTAEMKTGEGKTLTATMPLYLNALEGKGAMLLTNNSYLAIRDAEEMGKVYRFLGLSVGVGVSDNE 159
Cdd:COG0653 82 HFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHGMD 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 160 EEDRdaatkRAVYSSDIVYSTSSALGFDYLIDNLASSKSQKYMPKLHYAIVDEADAVLLDMAQTPLVISGSPRVQSNLYK 239
Cdd:COG0653 162 PEER-----RAAYAADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYY 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 240 IADELILSFEEQVDYYFD-KERQeVWIKNQGVREAERYFRIPHFYKQSNRELVRHLNLSLKAHKLFERGKDYVVDDGEIK 318
Cdd:COG0653 237 RINKLVPRLKRDGDYTVDeKART-VTLTEEGIEKVEKLLGIDNLYDPENIELVHHLNQALRAHALFKRDVDYIVKDGEVV 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 319 LLDATNGRVLEGTKLQGGVHQAIEQKEHLNVTPESRAMASITYQNLFRMFTKLAGMTGTGKTAEKEFIEVYDMEVVRIPT 398
Cdd:COG0653 316 IVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYGLDVVVIPT 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 399 NSPVRRIDYPDKIYTTLPEKIHATIEFVKQVHDTGQPILLVAGSV-------RMselfselLLLSGIPHSLLNAQSAVKE 471
Cdd:COG0653 396 NRPMIRKDEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIeksellsKL-------LKKEGIPHNVLNAKQHERE 468
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 472 AQMIAEAGQKGAVTVATNMAGRGTDIKLG---------------------------------KGVSELGGLAVIGTERMK 518
Cdd:COG0653 469 AEIVAQAGRPGAVTIATNMAGRGTDIVLGgnpeflaaaeladrgleweeaiakikaewqaehEEVLEAGGLHVIGTERHE 548
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 519 SQRMDLQLRGRSGRQGDIGFSQFFVSFEDDLM----------------------IESgpKWaqdyfrknrdkVNpekpKA 576
Cdd:COG0653 549 SRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMrifgsdrikgmmdklgmeegepIEH--KM-----------VS----KA 611
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 577 LgqRRFQKlfqqtqeasdgKGES----ARSQTIEFDSSVQLQREYVYRERNALINGESGHFSPRQIIDTVISSFIA-YLD 651
Cdd:COG0653 612 I--ENAQK-----------KVEGrnfdIRKNLLEYDDVMNDQRKVIYEQRREILEGEDLSETILDMREDVIEDLVDeYIP 678
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 652 GEVEKEE-----LIFEVNRFIfdNMSYNLQGISKE--MSLEEIKNYLFKIADEILREKHNLLG-DSFGDFERTAALKAID 723
Cdd:COG0653 679 EGSYPEQwdlegLEEALKELF--GLDLPIEEWLDEegLDEEELRERLLEAADEAYEEKEEELGpEVMRELERVVLLQVLD 756
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81845585 724 EAWIEEVDYLQQLRTVATARQTAQRNPVFEYHKEAYKSYNIMKKEIREQTFRNLLLSEVSFNE 786
Cdd:COG0653 757 RKWREHLDAMDHLRQGIGLRGYAQKDPLVEYKREAFELFEEMLDSIKEEVVRYLFRVQVRSEE 819
|
|
| secA |
PRK12906 |
preprotein translocase subunit SecA; Reviewed |
4-788 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237260 [Multi-domain] Cd Length: 796 Bit Score: 775.04 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 4 FNSLFSLDKKRLKKLQRTLNTINSLKGQMATLSNEELQAKTTEFRKRLVNGETLDDICAEAFAVVREADKRVLGLFPYDV 83
Cdd:PRK12906 5 LKKWFDNDKRELKRLEKIADKVNALEDEYEKLSDEQLQAKTPEFRDRIKDGESLDDLLPEAFAVAREGAKRVLGLRPFDV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 84 QVIGGLVLHQGNTAEMKTGEGKTLTATMPLYLNALEGKGAMLLTNNSYLAIRDAEEMGKVYRFLGLSVGVGVSDNEEEDr 163
Cdd:PRK12906 85 QIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDE- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 164 daatKRAVYSSDIVYSTSSALGFDYLIDNLASSKSQKYMPKLHYAIVDEADAVLLDMAQTPLVISGSPRVQSNLYKIADE 243
Cdd:PRK12906 164 ----KRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADR 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 244 LI-----------LSFEEQVDYYFDKERQEVWIKNQGVREAERYFRIPHFYKQSNRELVRHLNLSLKAHKLFERGKDYVV 312
Cdd:PRK12906 240 FVktlikdeaedgDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIMLKDIDYVV 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 313 DDGEIKLLDATNGRVLEGTKLQGGVHQAIEQKEHLNVTPESRAMASITYQNLFRMFTKLAGMTGTGKTAEKEFIEVYDME 392
Cdd:PRK12906 320 QDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNME 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 393 VVRIPTNSPVRRIDYPDKIYTTLPEKIHATIEFVKQVHDTGQPILLVAGSVRMSELFSELLLLSGIPHSLLNAQSAVKEA 472
Cdd:PRK12906 400 VITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEA 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 473 QMIAEAGQKGAVTVATNMAGRGTDIKLGKGVSELGGLAVIGTERMKSQRMDLQLRGRSGRQGDIGFSQFFVSFEDDLMie 552
Cdd:PRK12906 480 EIIMNAGQRGAVTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLM-- 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 553 sgPKWAQDYFRKNRDKVNPEKPKALGQRRF-QKLFQQTQEASDGKGESARSQTIEFDSSVQLQREYVYRERNALINGESg 631
Cdd:PRK12906 558 --RRFGSDRVKAFLDRLGMNDDDQVIESRMiTRQVESAQKRVEGNNYDTRKQLLQYDDVMREQREVIYKQRMQVINEDK- 634
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 632 hfSPRQIIDTVISSFI-----AYLDGEVEKEELIfEVNRFIFDNMSyNLQGISKE----MSLEEIKNYLFKIADEILREK 702
Cdd:PRK12906 635 --DLKEVLMPMIKRTVdrqvqMYTQGDKKDWDLD-ALRDFIVSAMP-DEETFDFEdlkgKSPEELKKRLLDIVEDNYAEK 710
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 703 HNLLGDS--FGDFERTAALKAIDEAWIEEVDYLQQLRTVATARQTAQRNPVFEYHKEAYKSYNIMKKEIREQTFRnlLLS 780
Cdd:PRK12906 711 EKQLGDPtqMLEFEKVVILRVVDSHWTDHIDAMDQLRQSIGLRGYGQLNPLVEYQEEGYRMFEEMISNIDYDVTR--LFM 788
|
....*...
gi 81845585 781 EVSFNENG 788
Cdd:PRK12906 789 KAQIRQNI 796
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
25-769 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 746.39 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 25 INSLKGQMATLSNEELQAKTTEFRKRLV-NGETLDDICAEAFAVVREADKRVLGLFPYDVQVIGGLVLHQGNTAEMKTGE 103
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLAkQGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 104 GKTLTATMPLYLNALEGKGAMLLTNNSYLAIRDAEEMGKVYRFLGLSVGVGVSDneeedRDAATKRAVYSSDIVYSTSSA 183
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSG-----MSPEERREAYACDITYGTNNE 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 184 LGFDYLIDNLASSKSQKYMPKLHYAIVDEADAVLLDMAQTPLVISGSPRVQSNLYKIADELILSFEEQVDYYFDKERQEV 263
Cdd:TIGR00963 156 LGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYVQANKFAKALEKEVDYEVDEKNRAV 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 264 WIKNQGVREAERYFRIPHFYKQSNRELVRHLNLSLKAHKLFERGKDYVVDDGEIKLLDATNGRVLEGTKLQGGVHQAIEQ 343
Cdd:TIGR00963 236 LLTEQGMKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFQKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEA 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 344 KEHLNVTPESRAMASITYQNLFRMFTKLAGMTGTGKTAEKEFIEVYDMEVVRIPTNSPVRRIDYPDKIYTTLPEKIHATI 423
Cdd:TIGR00963 316 KEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDLVYKTEEEKWKAVV 395
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 424 EFVKQVHDTGQPILLVAGSVRMSELFSELLLLSGIPHSLLNAQSAVKEAQMIAEAGQKGAVTVATNMAGRGTDIKLgKGV 503
Cdd:TIGR00963 396 EEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAGRGTDIKL-EEV 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 504 SELGGLAVIGTERMKSQRMDLQLRGRSGRQGDIGFSQFFVSFEDDLMIesgpKWAQDYFRKNRDKVNPEKPKALGQRRFQ 583
Cdd:TIGR00963 475 KELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLMR----IFGGDRLEGLMRRLGMDDDEPIESKMVS 550
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 584 KLFQQTQEASDGKGESARSQTIEFDSSVQLQREYVYRERNALINGEsghfSPRQIIDTVISSFI-----AYLDGEVEKEE 658
Cdd:TIGR00963 551 RALESAQKRVEGRNFDIRKQLLEYDDVLNKQREVIYAERRRVLESE----DLSELILQMLESTLdrivdAYINEEKLSEE 626
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 659 LIFE-----VNRFIFDNMSYNLQGISKeMSLEEIKNYLFKIADEILREKHNLLG-DSFGDFERTAALKAIDEAWIEEVDY 732
Cdd:TIGR00963 627 WDLEgliekLKTLFLLDGDLTPEDLEN-LTSEDLKELLLEKIRAAYDEKEEQLEsERMREFERYVLLQSIDRKWKEHLDA 705
|
730 740 750
....*....|....*....|....*....|....*..
gi 81845585 733 LQQLRTVATARQTAQRNPVFEYHKEAYKSYNIMKKEI 769
Cdd:TIGR00963 706 MDLLREGIGLRSYGQKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| secA |
PRK12903 |
preprotein translocase subunit SecA; Reviewed |
4-777 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237258 [Multi-domain] Cd Length: 925 Bit Score: 737.25 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 4 FNSLFSLDKKRLKKLQRTLNTINSLKGQMATLSNEELQAKTTEFRKRLVNGETLDDICAEAFAVVREADKRVLGLFPYDV 83
Cdd:PRK12903 3 FLKLFFFKSTEMRIAEKILKQINDLEPYYRNLTDEELANKTNEFKDRLKNGETLEDIRVEAFAVAREATKRVLGKRPYDV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 84 QVIGGLVLHQGNTAEMKTGEGKTLTATMPLYLNALEGKGAMLLTNNSYLAIRDAEEMGKVYRFLGLSVGVGVSDneeedR 163
Cdd:PRK12903 83 QIIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKAN-----M 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 164 DAATKRAVYSSDIVYSTSSALGFDYLIDNLASSKSQKYMPKLHYAIVDEADAVLLDMAQTPLVISGSPRVQSNLYKIADE 243
Cdd:PRK12903 158 DPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQ 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 244 LILSFEEQvDYYFDKERQEVWIKNQGVREAERYFRIPHFYKQSNRELVRHLNLSLKAHKLFERGKDYVVDDGEIKLLDAT 323
Cdd:PRK12903 238 FVRTLKED-DYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKIELVDQF 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 324 NGRVLEGTKLQGGVHQAIEQKEHLNVTPESRAMASITYQNLFRMFTKLAGMTGTGKTAEKEFIEVYDMEVVRIPTNSPVR 403
Cdd:PRK12903 317 TGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVI 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 404 RIDYPDKIYTTLPEKIHATIEFVKQVHDTGQPILLVAGSVRMSELFSELLLLSGIPHSLLNAQSAVKEAQMIAEAGQKGA 483
Cdd:PRK12903 397 RKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAEIIAKAGQKGA 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 484 VTVATNMAGRGTDIKLGKGVSELGGLAVIGTERMKSQRMDLQLRGRSGRQGDIGFSQFFVSFEDDLMIE--SGPKWAQDY 561
Cdd:PRK12903 477 ITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQLFRRfsNFDKIKEAF 556
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 562 frkNRDKVNPEKPKAlgqrrFQKLFQQTQEASDGKGESARSQTIEFDSSVQLQREYVYRERNA-LINGESGHFSPRQIID 640
Cdd:PRK12903 557 ---KKLGDDEIKSKF-----FSKALLNAQKKIEGFNFDTRKNVLDYDDVIRQQRDLIYAQRDLiLIADDLSHVIEKMISR 628
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 641 TVI----SSFIAYLDGEVEKEELIFEVNRFIFDNMSYNLQGIS-KEMSLEEIKNYLFKIADEILREK-----HNLLGDSF 710
Cdd:PRK12903 629 AVEqilkNSFIILKNNTINYKELVEFLNDNLLRITHFKFSEKDfENYHKEELAQYLIEALNEIYFKKrqvilDKIALNTF 708
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 81845585 711 GDFERTAALKAIDEAWIEEVDYLQQLRTVATARQTAQRNPVFEYHKEAYKSYNIMKKEIREQTFRNL 777
Cdd:PRK12903 709 FESERYIILSALDKYWQNHIDTMDKLRSGVNLVQYSQKNPYQVYTEEGTKKFNILLQEIAYDVIVSL 775
|
|
| SecA2_Bac_anthr |
TIGR04397 |
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in ... |
11-770 |
0e+00 |
|
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in genomes with the preprotein translocase SecA (TIGR00963) and closely resemble it, hence the designation SecA2. However, this appears to mark a different type of accessory Sec system SecA2 (TIGR03714) from the serine-rich glycoprotein type found in Staphylococcus and Streptococcus, and the actinobacterial SecA2 (TIGR04221). This type occurs in species including Bacillus anthracis, Geobacillus thermoglucosidasius, Solibacillus silvestris, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 275190 [Multi-domain] Cd Length: 774 Bit Score: 706.49 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 11 DKKRLKKLQRTLNTINSLKGQMATLSNEELQAKTTEFRKRLVNGETLDDICAEAFAVVREADKRVLGLFPYDVQVIGGLV 90
Cdd:TIGR04397 9 SARELKRYEKLVAQINELEPKMEKLSDEELRQKTITFKERLEDGKTVDDIKVEAFAVVREASKRVLGMRHYDVQLIGGLV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 91 LHQGNTAEMKTGEGKTLTATMPLYLNALEGKGAMLLTNNSYLAIRDAEEMGKVYRFLGLSVGVGVSDNEEEDrdaatKRA 170
Cdd:TIGR04397 89 LLEGNIAEMPTGEGKTLVASLPSYLRALEGKGVHVITVNDYLARRDRELIGQIHEFLGLTVGLNVPMMEASE-----KKE 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 171 VYSSDIVYSTSSALGFDYLIDNLASSKSQKYMPKLHYAIVDEADAVLLDMAQTPLVISGSPRVQSNLYKIADELILSFEE 250
Cdd:TIGR04397 164 AYQADITYGVGTEFGFDYLRDNMVYSLSDKVQRPYHFAIIDEIDSVLIDEAKTPLIIAGKTGSSSELHYICARIIKSFEE 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 251 QVDYYFDKERQEVWIKNQGVREAERYFRIPHFYKQSNRELVRHLNLSLKAHKLFERGKDYVVDDGEIKLLDATNGRVLEG 330
Cdd:TIGR04397 244 TEDYEYDPETKAASLTEEGITKIERAFGIDNLYDLEHQTLYHYLIQALRAHVLFKRDVDYIVKDGKIELVDMFTGRIMEG 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 331 TKLQGGVHQAIEQKEHLNVTPESRAMASITYQNLFRMFTKLAGMTGTGKTAEKEFIEVYDMEVVRIPTNSPVRRIDYPDK 410
Cdd:TIGR04397 324 RSLSDGLHQAIEAKEGLEITEENKTQASITIQNYFRMYPKLSGMTGTAKTEEKEFRETYGMDVVQIPTNRPRIRVDWPDR 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 411 IYTTLPEKIHATIEFVKQVHDTGQPILLVAGSVRMSELFSELLLLSGIPHSLLNAQSAVKEAQMIAEAGQKGAVTVATNM 490
Cdd:TIGR04397 404 VFMTYEAKYKAVAKEVKKRHETGQPILIGTTSILQSETVAKYLDKEKIPYQLLNAKTVEQEADLIALAGQKGQVTIATNM 483
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 491 AGRGTDIKLGKGVSELGGLAVIGTERMKSQRMDLQLRGRSGRQGDIGFSQFFVSFEDDLMIesgpKWAQDYFRKNRDKVN 570
Cdd:TIGR04397 484 AGRGTDILLGEGVHELGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSQFIISLEDDMFR----RYAAEELEKWKKKLK 559
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 571 PEKPKALGQRRFQKLFQQTQEASDGKGESARSQTIEFDSSVQLQREYVYRERNALINGEsghfsprQIIDTVISSFIAYL 650
Cdd:TIGR04397 560 TDETGEILNKDVHEFVDKVQRIIEGSHYSAREYNLKLDDVINEQRNVIYQLRDKLLEEE-------DAISEVLKMIRSAV 632
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 651 DGEVEK---EELIFEvnRFIFDNMSYNLQ--------GISKEM-SLEEIKNYLFKIADEILREKHNLL-GDSFGDFERTA 717
Cdd:TIGR04397 633 EQIIDQycpEEVLPE--EWDLERLTEELNrifpvtfvTFDKRIaDKEELKDLVKDTYEQYIAALEKLPeNEEIQMRLKHV 710
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 81845585 718 ALKAIDEAWIEEVDYLQQLRTVATARQTAQRNPVFEYHKEAYKSYNIMKKEIR 770
Cdd:TIGR04397 711 MLSVIDAHWTRHLDAMNLLKEGIGLRSYQQEDPMRLYQKEGLELFEAMYQNIE 763
|
|
| secA |
CHL00122 |
preprotein translocase subunit SecA; Validated |
4-779 |
0e+00 |
|
preprotein translocase subunit SecA; Validated
Pssm-ID: 214371 [Multi-domain] Cd Length: 870 Bit Score: 621.24 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 4 FNSLFSlDKKRLKKLQRTLNTINSLKGQMATLSNEELQAKTTEFRKRLVNGETLDDICAEAFAVVREADKRVLGLFPYDV 83
Cdd:CHL00122 2 FNNLFN-NKSKLNKYQTLVNQINLLEEELKNLTDTELRSKTNKLKKRLSNGQNLNKIIPESFALTREASFRTLGLRHFDV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 84 QVIGGLVLHQGNTAEMKTGEGKTLTATMPLYLNALEGKGAMLLTNNSYLAIRDAEEMGKVYRFLGLSVGVGVSDNEEEDR 163
Cdd:CHL00122 81 QLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEER 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 164 daatKRAvYSSDIVYSTSSALGFDYLIDNLASSKSQKYMPKLHYAIVDEADAVLLDMAQTPLVISGSPRVQSNLYKIADE 243
Cdd:CHL00122 161 ----KKN-YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYIVADE 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 244 LILSFEEQVDYYFDKERQEVWIKNQGVREAERYFRIPHFYKQSNRELVRHLNlSLKAHKLFERGKDYVVDDGEIKLLDAT 323
Cdd:CHL00122 236 LAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILN-ALKAKELFFKNVHYIVRNNEIIIVDEF 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 324 NGRVLEGTKLQGGVHQAIEQKEHLNVTPESRAMASITYQNLFRMFTKLAGMTGTGKTAEKEFIEVYDMEVVRIPTNSPVR 403
Cdd:CHL00122 315 TGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHRPML 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 404 RIDYPDKIYTTLPEKIHATIEFVKQVHDTGQPILLVAGSVRMSELFSELLLLSGIPHSLLNA--QSAVKEAQMIAEAGQK 481
Cdd:CHL00122 395 RKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAkpENVRRESEIVAQAGRK 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 482 GAVTVATNMAGRGTDIKLG------------------------------------------------------------- 500
Cdd:CHL00122 475 GSITIATNMAGRGTDIILGgnpefklkkelydlllsyksnekistisqnflnilnslkndlkflslsdfenlkilnease 554
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 501 -------------------------------KGVSELGGLAVIGTERMKSQRMDLQLRGRSGRQGDIGFSQFFVSFEDDL 549
Cdd:CHL00122 555 isipknsyqlslrflynellekykklqekekKIVKKLGGLYVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFLSLEDNL 634
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 550 MIESGPKWAQDYFRKNRDKVNPEKPKALgqrrfQKLFQQTQEASDGKGESARSQTIEFDSSVQLQREYVYRERNALINGE 629
Cdd:CHL00122 635 LRIFGGDKIQNLMQTLNLDDEPLESKLL-----SKSLDSAQKKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRKILESQ 709
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 630 sghfSPRQII----DTVISSFIAYLDGEVEKEELIFEVNRFIFD--NMSYNLQGISKE-MSLEEIKNYL---FKIADEIL 699
Cdd:CHL00122 710 ----SLRDWIlaygEQVIDDIITFLKSRKNPNNKFINLINKFKEllKLPLCFNKSDLNtLNSGELKKFLyqqFWISYDLK 785
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 700 REKHNLLGDSFGD-FERTAALKAIDEAWIEEVDYLQQLRTVATARQTAQRNPVFEYHKEAYKSYNIMKKEIReQTFRNLL 778
Cdd:CHL00122 786 ELYLEQIGTGLMReLERSLLLQQIDKSWKEHLQKMSLLREAIGWRSYGQKDPLIEYKNEAFNLFINMINHIR-HLVIYDL 864
|
.
gi 81845585 779 L 779
Cdd:CHL00122 865 F 865
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
4-385 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 601.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 4 FNSLFSLDKKR-LKKLQRTLNTINSLKGQMATLSNEELQAKTTEFRKRLVNGETLDDICAEAFAVVREADKRVLGLFPYD 82
Cdd:smart00957 1 LKKLFGSKNDReLKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 83 VQVIGGLVLHQGNTAEMKTGEGKTLTATMPLYLNALEGKGAMLLTNNSYLAIRDAEEMGKVYRFLGLSVGVGVSdneeeD 162
Cdd:smart00957 81 VQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVS-----G 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 163 RDAATKRAVYSSDIVYSTSSALGFDYLIDNLASSKSQKYMPKLHYAIVDEADAVLLDMAQTPLVISG-SPRVQSNLYKIA 241
Cdd:smart00957 156 MSPEERRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGpAEDESSDLYHRA 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 242 DELILSFEEQVDYYFDKERQEVWIKNQGVREAERYFRIPHFYKQSNRELVRHLNLSLKAHKLFERGKDYVVDDGEIKLLD 321
Cdd:smart00957 236 DKFVPRLKEDEDYTVDEKSRTVELTEEGIEKAEKLLGIDNLYDPENIELLHHVNQALRAHYLFKRDVDYIVRDGEVVIVD 315
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 81845585 322 ATNGRVLEGTKLQGGVHQAIEQKEHLNVTPESRAMASITYQNLFRMFTKLAGMTGTGKTAEKEF 385
Cdd:smart00957 316 EFTGRVMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEF 379
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
9-385 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 583.69 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 9 SLDKKRLKKLQRTLNTINSLKGQMATLSNEELQAKTTEFRKRLVNGETLDDICAEAFAVVREADKRVLGLFPYDVQVIGG 88
Cdd:pfam07517 7 SPNERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYDVQLIGG 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 89 LVLHQGNTAEMKTGEGKTLTATMPLYLNALEGKGAMLLTNNSYLAIRDAEEMGKVYRFLGLSVGVGVSDneeedRDAATK 168
Cdd:pfam07517 87 LVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSD-----MDPEER 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 169 RAVYSSDIVYSTSSALGFDYLIDNLASSKSQKYMPKLHYAIVDEADAVLLDMAQTPLVISGSPRVQSNLYKIADELILSF 248
Cdd:pfam07517 162 RAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREADRLVKSL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 249 EEQVDYYFDKERQEVWIKNQGVREAERYFRIPHFYKQSNRELVRHLNLSLKAHKLFERGKDYVVDDGEIKLLDATNGRVL 328
Cdd:pfam07517 242 EEDGDYEIDEKSKNVELTEKGIEKIEKLLGIDNLYDPENVELLHHINQALKAHHLFKRDVDYIVRDGEVVIVDEFTGRVM 321
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 81845585 329 EGTKLQGGVHQAIEQKEHLNVTPESRAMASITYQNLFRMFTKLAGMTGTGKTAEKEF 385
Cdd:pfam07517 322 PGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEF 378
|
|
| secA |
PRK12898 |
preprotein translocase subunit SecA; Reviewed |
14-555 |
3.02e-179 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237253 [Multi-domain] Cd Length: 656 Bit Score: 529.20 E-value: 3.02e-179
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 14 RLKKLQRTLNTINSLKGQMATLSNEELQAKTTEFRKRLVNGETLDDIC-AEAFAVVREADKRVLGLFPYDVQVIGGLVLH 92
Cdd:PRK12898 37 AARRQRLLADRVLAAAEALAGLSEEALRARSLALRARLRARDGFRDALlAEAFALVREASGRVLGQRHFDVQLMGGLALL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 93 QGNTAEMKTGEGKTLTATMPLYLNALEGKGAMLLTNNSYLAIRDAEEMGKVYRFLGLSVGVGVsdneeEDRDAATKRAVY 172
Cdd:PRK12898 117 SGRLAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVV-----EDQSPDERRAAY 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 173 SSDIVYSTSSALGFDYLIDNLA-------------------SSKSQKYMPKLHYAIVDEADAVLLDMAQTPLVISGSPRV 233
Cdd:PRK12898 192 GADITYCTNKELVFDYLRDRLAlgqrasdarlaleslhgrsSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKE 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 234 QSNL--YKIADELILSFEEQVDYYFDKERQEVWIKNQG---VREAERyfRIPHFYKQSNR--ELVRHlnlSLKAHKLFER 306
Cdd:PRK12898 272 ADEAevYRQALELAAQLKEGEDYTIDAAEKRIELTEAGrarIAELAE--SLPPAWRGAVRreELVRQ---ALSALHLFRR 346
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 307 GKDYVVDDGEIKLLDATNGRVLEGTKLQGGVHQAIEQKEHLNVTPESRAMASITYQNLFRMFTKLAGMTGTGKTAEKEFI 386
Cdd:PRK12898 347 DEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELW 426
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 387 EVYDMEVVRIPTNSPVRRIDYPDKIYTTLPEKIHATIEFVKQVHDTGQPILLVAGSVRMSELFSELLLLSGIPHSLLNAQ 466
Cdd:PRK12898 427 SVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAK 506
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 467 SAVKEAQMIAEAGQKGAVTVATNMAGRGTDIKLGKGVSELGGLAVIGTERMKSQRMDLQLRGRSGRQGDIGFSQFFVSFE 546
Cdd:PRK12898 507 QDAEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLE 586
|
....*....
gi 81845585 547 DDLMIESGP 555
Cdd:PRK12898 587 DDLLQSFLG 595
|
|
| secA |
PRK12901 |
preprotein translocase subunit SecA; Reviewed |
12-773 |
7.27e-168 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237256 [Multi-domain] Cd Length: 1112 Bit Score: 514.57 E-value: 7.27e-168
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 12 KKRLKKLQRTLNTINSLKGQMATLSNEELQAKTTEFRKRLVNG------------------------------------- 54
Cdd:PRK12901 14 ERDLKEIQPIVEKIKAEYPELEALSNDELRAKTDEFKQYIKEAvadidakieelkaeaiesldiderediyaqidkleke 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 55 ------ETLDDICAEAFAVVREADKRVLG---------------------------------------------LFPYDV 83
Cdd:PRK12901 94 ayeileKVLDEILPEAFAIVKETARRFAEneeievtatdfdrelaatkdfvtiegdkaiwknhwdaggneitwdMVHYDV 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 84 QVIGGLVLHQGNTAEMKTGEGKTLTATMPLYLNALEGKGAMLLTNNSYLAIRDAEEMGKVYRFLGLSVGVgvSDNEEEDR 163
Cdd:PRK12901 174 QLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDC--IDKHQPNS 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 164 DAatKRAVYSSDIVYSTSSALGFDYLIDNLASSKSQKYMPKLHYAIVDEADAVLLDMAQTPLVISG-------------S 230
Cdd:PRK12901 252 EA--RRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLIDDARTPLIISGpvpkgddqefeelK 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 231 PRVQS-----------------------------------------------------------------------NLYK 239
Cdd:PRK12901 330 PRVERlveaqrklatqflaeakkliaegdkkegglallrayrglpknkalikflseegikallqktenfymqdnnrEMPE 409
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 240 IADELILSFEE---QVDY------YFDKERQE-------------VWIKNQGVREAERYFR-----IPHFYKQSNRelVR 292
Cdd:PRK12901 410 VDEELYFVIDEknnSVELtdkgidYITGNDEDpdffvlpdigtelAEIENEGGLDEEEEAEkkeelFQDYSVKSER--VH 487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 293 HLNLSLKAHKLFERGKDYVVDDGEIKLLDATNGRVLEGTKLQGGVHQAIEQKEHLNVTPESRAMASITYQNLFRMFTKLA 372
Cdd:PRK12901 488 TLNQLLKAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNYFRMYHKLA 567
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 373 GMTGTGKTAEKEFIEVYDMEVVRIPTNSPVRRIDYPDKIYTTLPEKIHATIEFVKQVHDTGQPILLVAGSVRMSELFSEL 452
Cdd:PRK12901 568 GMTGTAETEAGEFWDIYKLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRM 647
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 453 LLLSGIPHSLLNAQSAVKEAQMIAEAGQKGAVTVATNMAGRGTDIKLGKGVSELGGLAVIGTERMKSQRMDLQLRGRSGR 532
Cdd:PRK12901 648 LKMRKIPHNVLNAKLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGR 727
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 533 QGDIGFSQFFVSFEDDLMiesgPKWAQDYFRKNRDKVNPEKPKALGQRRFQKLFQQTQEASDGKGESARSQTIEFDSSVQ 612
Cdd:PRK12901 728 QGDPGSSQFYVSLEDNLM----RLFGSERIAKVMDRMGLKEGEVIQHSMISKSIERAQKKVEENNFGIRKRLLEYDDVMN 803
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 613 LQREYVY-RERNALInGESGHFSPRQIIDTVISSFI--AYLDGEVE--KEELI------FEVNRFIFDNMSYnlQGISKE 681
Cdd:PRK12901 804 SQREVIYkRRRHALM-GERLGMDIANMIYDVCEAIVenNKVANDYKgfKFELIrtlameSPITEEEFNKLKK--DELTDK 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 682 MSLEEIKNYLFK------IADEILREKHNLLGDSF--------------------------------GDFERTAALKAID 723
Cdd:PRK12901 881 LYDAALENYQRKmeriaeIAFPVIKQVYEEQGNMYerivvpftdgkrtlnvvtnlkeayetegkeivKDFEKNITLHIID 960
|
970 980 990 1000 1010
....*....|....*....|....*....|....*....|....*....|
gi 81845585 724 EAWIEEVDYLQQLRTVATARQTAQRNPVFEYHKEAYKSYNIMKKEIREQT 773
Cdd:PRK12901 961 EAWKEHLREMDELKQSVQNASYEQKDPLLIYKFESFELFKNMVDKVNREV 1010
|
|
| SecA2_Mycobac |
TIGR04221 |
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the ... |
12-788 |
1.73e-144 |
|
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the SecA2 subunit of the Mycobacterial type of accessory secretory system. This family is quite different SecA2 of the Staph/Strep type (TIGR03714).
Pssm-ID: 275062 [Multi-domain] Cd Length: 762 Bit Score: 443.11 E-value: 1.73e-144
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 12 KKRLKKLQRTLNTINSLKGQMATLSNEELqaktTEFRKRLVNGETLDDIcAEAFAVVREADKRVLGLFPYDVQVIGGLVL 91
Cdd:TIGR04221 14 ERNQKRSLAIVPAAASRMKELSALDDEEL----TKAARDLVLSGEAADA-AQFLAILREAAERTLGMRPFDVQLLGALRL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 92 HQGNTAEMKTGEGKTLTATMPLYLNALEGKGAMLLTNNSYLAIRDAEEMGKVYRFLGLSVGVGVSDNEEEDRdaatkRAV 171
Cdd:TIGR04221 89 LAGDVIEMATGEGKTLAGAMAATGFALLGKRVHVVTVNDYLARRDAEWMGPLVDFFGLTVGWVTEDSTPDER-----RAA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 172 YSSDIVYSTSSALGFDYLIDNLASSKSQKYMPKLHYAIVDEADAVLLDMAQTPLVISGSPRVQSNLYKIADeLILSFEEQ 251
Cdd:TIGR04221 164 YACDVTYASVNEIGFDVLRDQLVTDRADLVQPAADVALIDEADSVLVDEALVPLVLAGNEPGEAPRGRITD-LVRRLRED 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 252 VDYYFDKERQEVWIKNQGVREAERYFRIPHFYKQSN-RELVRHLNLSLKAHKLFERGKDYVVDDGEIKLLDATNGRVLEG 330
Cdd:TIGR04221 243 KHYTVDEDGRNVHLTEDGARAVEAELGIDDLYSEEHvGTTLVQVNVALHAHALLIRDVHYIVRDGKVALIDASRGRVAQL 322
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 331 TKLQGGVHQAIEQKEHLNVTPESRAMASITYQNLFRMFTKLAGMTGTGKTAEKEFIEVYDMEVVRIPTNSPVRRIDYPDK 410
Cdd:TIGR04221 323 QRWPDGLQAAVEAKEGLEVTEGGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNTPNIRFDEADR 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 411 IYTTLPEKIHATIEFVKQVHDTGQPILLVAGSVRMSELFSELLLLSGIPHSLLNAQSAVKEAQMIAEAGQKGAVTVATNM 490
Cdd:TIGR04221 403 VYATAAEKNDAIVEEIAEVHKTGQPVLVGTQDVAESEELAEALLEAGVPCNVLNAKNDAEEAAIIAEAGDIGAVTVSTQM 482
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 491 AGRGTDIKLGKG-------VSELGGLAVIGTERMKSQRMDLQLRGRSGRQGDIGFSQFFVSFEDDLMIESGpkwaqdyfr 563
Cdd:TIGR04221 483 AGRGTDIRLGGSdeadhdrVAELGGLHVIGTGRHRTARLDNQLRGRAGRQGDPGSSVFFVSLEDDVVAVGG--------- 553
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 564 kNRDKVnPEKPKALG---QRRFQKLFQQTQEASDGKGESARSQTIEFDSSVQLQREYVYRERNALingesghfsprqiid 640
Cdd:TIGR04221 554 -AGETV-PAQPAEDGrieSPRVQDFVDHAQRVAEGQLLEIHANTWRYNQLIAQQRDIIDERRETL--------------- 616
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 641 tvissfiayLDGEVEKEELifevnrfifdnmSYNLQGISKEMSLEEIKNYLFKIADEIlrekhnllgdsfgdfertaALK 720
Cdd:TIGR04221 617 ---------LDTDTAWQEL------------SERAADRAAELKKEVSEDALERAAREI-------------------MLY 656
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81845585 721 AIDEAWIEEVDYLQQLRTVATARQTAQRNPVFEYHKEAYKSYNIMKKEIRE---QTFRnlllsEVSFNENG 788
Cdd:TIGR04221 657 HLDRGWAEHLAYLDDVRESIHLRALGRETPLDEFHRMAVRAFKELAQRAVDkavETFE-----EVEIDADG 722
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
39-398 |
3.84e-111 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 337.58 E-value: 3.84e-111
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 39 ELQAKTTEFRKRLVNGETLDDICAEAFAVVREADKRVLGLFPYDVQVIGGLVLHQGNTAEMKTGEGKTLTATMPLYLNAL 118
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 119 EGKGAMLLTNNSYLAIRDAEEMGKVYRFLGLSVGVGVSDNEEEDRdaatkRAVYSSDIVYSTSSALGFDYLIDNLASSKS 198
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDER-----REAYAADITYGTNNELGFDYLRDNMVTSKE 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 199 QKYMPKLHYAIVDEADAVLLDMAQTPLVISGSprvqsnlykiadelilsfeeqvdyyfdkerqevwiknqgvreaeryfr 278
Cdd:cd17928 156 DLVQRGLNFAIVDEVDSILIDEARTPLIISGT------------------------------------------------ 187
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 279 iphfykqsnrelvrhlnlslkahklfergkdyvvddgeiklldatngrvlegtklqggvhqaieqkehlnvtpesraMAS 358
Cdd:cd17928 188 -----------------------------------------------------------------------------LAT 190
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 81845585 359 ITYQNLFRMFTKLAGMTGTGKTAEKEFIEVYDMEVVRIPT 398
Cdd:cd17928 191 ITFQNYFRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| SF2_C_secA |
cd18803 |
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the ... |
404-544 |
3.06e-66 |
|
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA is a DEAD-like helicase belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350190 [Multi-domain] Cd Length: 141 Bit Score: 216.26 E-value: 3.06e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 404 RIDYPDKIYTTLPEKIHATIEFVKQVHDTGQPILLVAGSVRMSELFSELLLLSGIPHSLLNAQSAVKEAQMIAEAGQKGA 483
Cdd:cd18803 1 RKDLPDLVYKTEEEKWKAIVEEVKELHAKGQPVLVGTRSVEKSELLSALLKEEGIPHNVLNAKNHAREAEIIAEAGQKGA 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81845585 484 VTVATNMAGRGTDIKLGKGVSELGGLAVIGTERMKSQRMDLQLRGRSGRQGDIGFSQFFVS 544
Cdd:cd18803 81 VTIATNMAGRGTDIKLGGNVEELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLS 141
|
|
| SecA_PP_bind |
smart00958 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
230-342 |
6.14e-39 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 214938 [Multi-domain] Cd Length: 114 Bit Score: 139.90 E-value: 6.14e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 230 SPRVQSNLYKIADELILSFEEQV-DYYFDKERQEVWIKNQGVREAERYFRIPHFYKQSNRELVRHLNLSLKAHKLFERGK 308
Cdd:smart00958 1 PAEDSSELYKRADELVPTLKKDEeDYEVDEKSRQVALTEEGIEKAEKLLGIDNLYDPENIELVHHVNQALRAHKLFKRDV 80
|
90 100 110
....*....|....*....|....*....|....
gi 81845585 309 DYVVDDGEIKLLDATNGRVLEGTKLQGGVHQAIE 342
Cdd:smart00958 81 DYIVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIE 114
|
|
| SecA_PP_bind |
pfam01043 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
233-342 |
2.55e-37 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 460039 [Multi-domain] Cd Length: 110 Bit Score: 135.23 E-value: 2.55e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 233 VQSNLYKIADELILSFEEQVDYYFDKERQEVWIKNQGVREAERYFRIPHFYKQSNRELVRHLNLSLKAHKLFERGKDYVV 312
Cdd:pfam01043 1 KSTELYRQADKFVKQLKEDEDYEVDEKAKTVELTEEGIEKAEKLLGIDNLYDPENIELVHHINQALKAHHLFKRDVDYIV 80
|
90 100 110
....*....|....*....|....*....|
gi 81845585 313 DDGEIKLLDATNGRVLEGTKLQGGVHQAIE 342
Cdd:pfam01043 81 KDGEVVIVDEFTGRLMPGRRYSDGLHQAIE 110
|
|
| SecA_SW |
pfam07516 |
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts ... |
601-781 |
1.37e-34 |
|
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This family is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.
Pssm-ID: 462189 [Multi-domain] Cd Length: 213 Bit Score: 131.08 E-value: 1.37e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 601 RSQTIEFDSSVQLQREYVYRERNALINGESGHFSPRQIIDTVISSFI-AYLDGEVEKEE-----LIFEVNRFIFDNMSYN 674
Cdd:pfam07516 26 RKNLLEYDDVMNQQREVIYAQRREILEGEDLKEDILEMIEDVVDDIVdEYIPPEESPEEwdlegLKEALNEIFGLELPIS 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 675 LQGISKEMSLEEIKNYLFKIADEILREKHNLLG-DSFGDFERTAALKAIDEAWIEEVDYLQQLRTVATARQTAQRNPVFE 753
Cdd:pfam07516 106 EWEEEEDLDKEELKERLLEAAEEAYEEKEEEIGpELMRELERVVLLQVIDSKWKEHLDAMDQLRQGIGLRAYGQKDPLVE 185
|
170 180
....*....|....*....|....*...
gi 81845585 754 YHKEAYKSYNIMKKEIREQTFRNLLLSE 781
Cdd:pfam07516 186 YKREGFELFEEMLDAIREEVVRYLFRVQ 213
|
|
| SF2-N |
cd00046 |
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily ... |
96-226 |
1.46e-15 |
|
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily 2 helicases comprise a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This N-terminal domain contains the ATP-binding region.
Pssm-ID: 350668 [Multi-domain] Cd Length: 146 Bit Score: 74.36 E-value: 1.46e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 96 TAEMKTGEGKTLTATMPLYLNALE-GKGAMLLTNNSYLAIRDAEEMgKVYRFLGLSVGVGVSDNE-EEDRDAATKRAvys 173
Cdd:cd00046 5 LITAPTGSGKTLAALLAALLLLLKkGKKVLVLVPTKALALQTAERL-RELFGPGIRVAVLVGGSSaEEREKNKLGDA--- 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 81845585 174 sDIVYSTSSALGFDYLIDNLASSKSQKYMpklhyaIVDEADAVLLDMAQTPLV 226
Cdd:cd00046 81 -DIIIATPDMLLNLLLREDRLFLKDLKLI------IVDEAHALLIDSRGALIL 126
|
|
| DEAD-like_helicase_C |
cd09300 |
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases ... |
484-543 |
9.20e-06 |
|
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases is composed of two superfamilies, SF1 and SF2, that share almost identical folds and extensive structural similarity in their catalytic core. Helicases are involved in ATP-dependent RNA or DNA unwinding. Two distinct types of helicases exist, those forming toroidal, predominantly hexameric structures, and those that do not. SF1 and SF2 helicases do not form toroidal structures, while SF3-6 helicases do. Their conserved helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350171 [Multi-domain] Cd Length: 59 Bit Score: 43.69 E-value: 9.20e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 484 VTVATNMAGRGTDIklgkgvseLGGLAVIGTERMKSQRMDLQLRGRSGRQGDIGFSQFFV 543
Cdd:cd09300 8 VLIAVN*ALTGFDA--------PELNTIIVDKNLRSYRGLNQAFGRANRIYTFGGIVTYR 59
|
|
| DEAD-like_helicase_N |
cd17912 |
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase ... |
96-136 |
1.08e-05 |
|
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase superfamily is a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. The N-terminal domain contains the ATP-binding region.
Pssm-ID: 350670 [Multi-domain] Cd Length: 81 Bit Score: 44.05 E-value: 1.08e-05
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 81845585 96 TAEMKTGEGKTLTATMPLYLNALEGKGAMLLTNNSYLAIRD 136
Cdd:cd17912 3 LHLGPTGSGKTLVAIQKIASAMSSGKSVLVVTPTKLLAHEI 43
|
|
| DEXDc |
smart00487 |
DEAD-like helicases superfamily; |
73-241 |
1.74e-05 |
|
DEAD-like helicases superfamily;
Pssm-ID: 214692 [Multi-domain] Cd Length: 201 Bit Score: 46.33 E-value: 1.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 73 KRVLGLFPYDVQVIGGLVLHQGN---TAEMKTGEGKTLTATMPLYLNALEGKG--AMLLTNNSYLAIRDAEEMGKVYRFL 147
Cdd:smart00487 2 EKFGFEPLRPYQKEAIEALLSGLrdvILAAPTGSGKTLAALLPALEALKRGKGgrVLVLVPTRELAEQWAEELKKLGPSL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 148 GL-SVGVGVSDNEEEDRDAATKRAvysSDIVYSTssalgFDYLIDNLASSKsqKYMPKLHYAIVDEADaVLLDMAQTPLV 226
Cdd:smart00487 82 GLkVVGLYGGDSKREQLRKLESGK---TDILVTT-----PGRLLDLLENDK--LSLSNVDLVILDEAH-RLLDGGFGDQL 150
|
170
....*....|....*
gi 81845585 227 ISGSPRVQSNLYKIA 241
Cdd:smart00487 151 EKLLKLLPKNVQLLL 165
|
|
| DEXHc_archSki2 |
cd18028 |
DEXH-box helicase domain of archaeal Ski2-type helicase; Archaeal Ski2-type RNA helicases play ... |
78-212 |
3.07e-05 |
|
DEXH-box helicase domain of archaeal Ski2-type helicase; Archaeal Ski2-type RNA helicases play an important role in RNA degradation, processing and splicing pathways. They belong to the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350786 [Multi-domain] Cd Length: 177 Bit Score: 45.40 E-value: 3.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 78 LFPYDVQVIGGLVLHQGN-TAEMKTGEGKTLTATMPLYLNALEGKGAMLLTNNSYLAIRDAEEMGKVYRfLGLSVGVGVS 156
Cdd:cd18028 2 LYPPQAEAVRAGLLKGENlLISIPTASGKTLIAEMAMVNTLLEGGKALYLVPLRALASEKYEEFKKLEE-IGLKVGISTG 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 81845585 157 DNEEEDRDAAtkravySSDIVYSTSSalGFDYLIDNLASsksqkYMPKLHYAIVDE 212
Cdd:cd18028 81 DYDEDDEWLG------DYDIIVATYE--KFDSLLRHSPS-----WLRDVGVVVVDE 123
|
|
| SF2_C |
cd18785 |
C-terminal helicase domain of superfamily 2 DEAD/H-box helicases; Superfamily (SF)2 helicases ... |
483-543 |
5.18e-05 |
|
C-terminal helicase domain of superfamily 2 DEAD/H-box helicases; Superfamily (SF)2 helicases include DEAD-box helicases, UvrB, RecG, Ski2, Sucrose Non-Fermenting (SNF) family helicases, and dicer proteins, among others. Similar to SF1 helicases, they do not form toroidal structures like SF3-6 helicases. SF2 helicases are a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Their helicase core is surrounded by C- and N-terminal domains with specific functions such as nucleases, RNA or DNA binding domains, or domains engaged in protein-protein interactions. The core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350172 [Multi-domain] Cd Length: 77 Bit Score: 42.31 E-value: 5.18e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81845585 483 AVTVATNMAGRGTDIklgkgvseLGGLAVIGTERMKSQRMDLQLRGRSGRQGDIGFSQFFV 543
Cdd:cd18785 24 EILVATNVLGEGIDV--------PSLDTVIFFDPPSSAASYIQRVGRAGRGGKDEGEVILF 76
|
|
| DEADc_MSS116 |
cd17964 |
DEAD-box helicase domain of DEAD-box helicase Mss116; Mss116 is an RNA chaperone important for ... |
100-220 |
1.18e-04 |
|
DEAD-box helicase domain of DEAD-box helicase Mss116; Mss116 is an RNA chaperone important for mitochondrial group I and II intron splicing, translational activation, and RNA end processing. Mss116 is a member of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.
Pssm-ID: 350722 [Multi-domain] Cd Length: 211 Bit Score: 44.11 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 100 KTGEGKTLTATMPLYLNALEGK--------GAMLLTNNSYLAIRDAEEMGKVYRF---LGLSVGVGVSDNEEEDRDAATK 168
Cdd:cd17964 40 KTGTGKTLAFLLPAIQSLLNTKpagrrsgvSALIISPTRELALQIAAEAKKLLQGlrkLRVQSAVGGTSRRAELNRLRRG 119
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 81845585 169 RAvyssDIVYSTSSALgfdylIDNLASSKSQKYMPKLHYAIVDEADAvLLDM 220
Cdd:cd17964 120 RP----DILVATPGRL-----IDHLENPGVAKAFTDLDYLVLDEADR-LLDM 161
|
|
| DEAD |
pfam00270 |
DEAD/DEAH box helicase; Members of this family include the DEAD and DEAH box helicases. ... |
97-222 |
1.27e-03 |
|
DEAD/DEAH box helicase; Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Pssm-ID: 425570 [Multi-domain] Cd Length: 165 Bit Score: 40.30 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81845585 97 AEMKTGEGKTLTATMPLyLNAL----EGKGAMLLTNNSYLAIRDAEEMGKVYRFLGLSVGVGVSDNEEEDRdaatKRAVY 172
Cdd:pfam00270 19 VQAPTGSGKTLAFLLPA-LEALdkldNGPQALVLAPTRELAEQIYEELKKLGKGLGLKVASLLGGDSRKEQ----LEKLK 93
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 81845585 173 SSDIVYSTSSALgfDYLIDNLASSKSQKYMpklhyaIVDEADaVLLDMAQ 222
Cdd:pfam00270 94 GPDILVGTPGRL--LDLLQERKLLKNLKLL------VLDEAH-RLLDMGF 134
|
|
| |
