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Conserved domains on  [gi|52783465|sp|Q91Z38|]
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RecName: Full=Tetratricopeptide repeat protein 1; Short=TPR repeat protein 1

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 1003384)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
119-221 2.92e-16

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 76.11  E-value: 2.92e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465 119 LKEEGNERFKRGDYMEAESSYSQALQMCPacfqkDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAEL 198
Cdd:COG4785  76 YYERGVAYDSLGDYDLAIADFDQALELDP-----DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIA 150

                        90       100
                ....*....|....*....|...
gi 52783465 199 YEKTDKLDEALEDYKSVLEKDPS 221
Cdd:COG4785 151 LYYLGRYELAIADLEKALELDPN 173
3a0801s09 super family cl36792
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 37-254 4.67e-12

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


The actual alignment was detected with superfamily member TIGR00990:

Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 66.16  E-value: 4.67e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465    37 KGQHCQSKLPKAAEAHPQDDHVEEEcfhDCSASFEEEQPGAHVAGSKASDDSSSELDEEYLIELeknmpeeEKQKRREES 116
Cdd:TIGR00990  58 KGQQQRESKPKISKKERRKRKQAEK---ETEGKTEEKKSTAPKNAPVEPADELPEIDESSVANL-------SEEERKKYA 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465   117 AKLKEEGNERFKRGDYMEAESSYSQALQMcpacfqKDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRA 196
Cdd:TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC------KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRA 201

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 52783465   197 ELYEKTDKLDEALEDYK-SVLEKDPSVHQAREACMRLPKQIEErnERLKEEMLGKLKDL 254
Cdd:TIGR00990 202 NAYDGLGKYADALLDLTaSCIIDGFRNEQSAQAVERLLKKFAE--SKAKEILETKPENL 258
 
Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
119-221 2.92e-16

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 76.11  E-value: 2.92e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465 119 LKEEGNERFKRGDYMEAESSYSQALQMCPacfqkDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAEL 198
Cdd:COG4785  76 YYERGVAYDSLGDYDLAIADFDQALELDP-----DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIA 150

                        90       100
                ....*....|....*....|...
gi 52783465 199 YEKTDKLDEALEDYKSVLEKDPS 221
Cdd:COG4785 151 LYYLGRYELAIADLEKALELDPN 173
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 37-254 4.67e-12

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 66.16  E-value: 4.67e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465    37 KGQHCQSKLPKAAEAHPQDDHVEEEcfhDCSASFEEEQPGAHVAGSKASDDSSSELDEEYLIELeknmpeeEKQKRREES 116
Cdd:TIGR00990  58 KGQQQRESKPKISKKERRKRKQAEK---ETEGKTEEKKSTAPKNAPVEPADELPEIDESSVANL-------SEEERKKYA 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465   117 AKLKEEGNERFKRGDYMEAESSYSQALQMcpacfqKDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRA 196
Cdd:TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC------KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRA 201

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 52783465   197 ELYEKTDKLDEALEDYK-SVLEKDPSVHQAREACMRLPKQIEErnERLKEEMLGKLKDL 254
Cdd:TIGR00990 202 NAYDGLGKYADALLDLTaSCIIDGFRNEQSAQAVERLLKKFAE--SKAKEILETKPENL 258
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 117-247 2.35e-08

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 54.41  E-value: 2.35e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465  117 AKLKEEGNERFKRGDYMEAESSYSQALQMCPACfqkdrSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRA 196
Cdd:PLN03088   3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-----AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG 77

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 52783465  197 ELYEKtdkldeaLEDY---KSVLEKDPSVHQAREacmRLPKQIEERNERLKEEM 247
Cdd:PLN03088  78 TACMK-------LEEYqtaKAALEKGASLAPGDS---RFTKLIKECDEKIAEEE 121
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 127-220 1.33e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 49.70  E-value: 1.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465   127 FKRGDYMEAESSYSQALQMCPACFqkdrSVLFsNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLD 206
Cdd:TIGR02917 476 LGKGDLAKAREAFEKALSIEPDFF----PAAA-NLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE 550

                          90
                  ....*....|....
gi 52783465   207 EALEDYKSVLEKDP 220
Cdd:TIGR02917 551 EAVAWLEKAAELNP 564
TPR_1 pfam00515
Tetratricopeptide repeat;
158-188 4.41e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.02  E-value: 4.41e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 52783465   158 FSNRAAARMKQDKKETAITDCSKAIQLNPTY 188
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 189-221 8.62e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 8.62e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 52783465    189 IRAILRRAELYEKTDKLDEALEDYKSVLEKDPS 221
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
 
Name Accession Description Interval E-value
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
119-221 2.92e-16

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 76.11  E-value: 2.92e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465 119 LKEEGNERFKRGDYMEAESSYSQALQMCPacfqkDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAEL 198
Cdd:COG4785  76 YYERGVAYDSLGDYDLAIADFDQALELDP-----DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIA 150

                        90       100
                ....*....|....*....|...
gi 52783465 199 YEKTDKLDEALEDYKSVLEKDPS 221
Cdd:COG4785 151 LYYLGRYELAIADLEKALELDPN 173
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
123-225 3.63e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 70.42  E-value: 3.63e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465 123 GNERFKRGDYMEAESSYSQALQMCPacfqkDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKT 202
Cdd:COG0457  49 GLAYLRLGRYEEALADYEQALELDP-----DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLEL 123

                        90       100
                ....*....|....*....|...
gi 52783465 203 DKLDEALEDYKSVLEKDPSVHQA 225
Cdd:COG0457 124 GRYDEAIEAYERALELDPDDADA 146
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
123-226 5.33e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 70.04  E-value: 5.33e-14
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465 123 GNERFKRGDYMEAESSYSQALQMCPacfqkDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKT 202
Cdd:COG0457  15 GLAYRRLGRYEEAIEDYEKALELDP-----DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQAL 89

                        90       100
                ....*....|....*....|....
gi 52783465 203 DKLDEALEDYKSVLEKDPSVHQAR 226
Cdd:COG0457  90 GRYEEALEDYDKALELDPDDAEAL 113
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 91-238 3.77e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 69.25  E-value: 3.77e-13
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465  91 ELDEEYLIELEKNMPEEEKQKRREESAKLKEEGNERFKRGDYMEAESSYSQALQMCPACFQkdrsvLFSNRAAARMKQDK 170
Cdd:COG3914  53 EAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAE-----ALFNLGNLLLALGR 127

                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 52783465 171 KETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALEDYKSVLEKDPS---VHQAREACMRLPKQIEE 238
Cdd:COG3914 128 LEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDnaeALNNLGNALQDLGRLEE 198
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 123-264 2.49e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 66.94  E-value: 2.49e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465 123 GNERFKRGDYMEAESSYSQALQMCPACFQkdrsvLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKT 202
Cdd:COG3914 119 GNLLLALGRLEEALAALRRALALNPDFAE-----AYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDL 193

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 52783465 203 DKLDEALEDYKSVLEKDPSVHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGL 264
Cdd:COG3914 194 GRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFAL 255
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 37-254 4.67e-12

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 66.16  E-value: 4.67e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465    37 KGQHCQSKLPKAAEAHPQDDHVEEEcfhDCSASFEEEQPGAHVAGSKASDDSSSELDEEYLIELeknmpeeEKQKRREES 116
Cdd:TIGR00990  58 KGQQQRESKPKISKKERRKRKQAEK---ETEGKTEEKKSTAPKNAPVEPADELPEIDESSVANL-------SEEERKKYA 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465   117 AKLKEEGNERFKRGDYMEAESSYSQALQMcpacfqKDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRA 196
Cdd:TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC------KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRA 201

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 52783465   197 ELYEKTDKLDEALEDYK-SVLEKDPSVHQAREACMRLPKQIEErnERLKEEMLGKLKDL 254
Cdd:TIGR00990 202 NAYDGLGKYADALLDLTaSCIIDGFRNEQSAQAVERLLKKFAE--SKAKEILETKPENL 258
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 127-220 8.25e-12

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 62.29  E-value: 8.25e-12
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465 127 FKRGDYMEAESSYSQALQMCPacfqkDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLD 206
Cdd:COG5010  65 NKLGDFEESLALLEQALQLDP-----NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD 139

                        90
                ....*....|....
gi 52783465 207 EALEDYKSVLEKDP 220
Cdd:COG5010 140 EAKAALQRALGTSP 153
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 123-224 7.13e-11

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 61.28  E-value: 7.13e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465 123 GNERFKRGDYMEAESSYSQALQMCPACFqkdRSVLfsNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKT 202
Cdd:COG2956 151 AELYLEQGDYDEAIEALEKALKLDPDCA---RALL--LLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKL 225

                        90       100
                ....*....|....*....|..
gi 52783465 203 DKLDEALEDYKSVLEKDPSVHQ 224
Cdd:COG2956 226 GDPEEALELLRKALELDPSDDL 247
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
127-224 9.19e-11

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 57.49  E-value: 9.19e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465 127 FKRGDYMEAESSYSQALQMCPacfqkDRSVLFSNRAAARMKQDKKETAItDCSKAIQLNPTYIRAILRRAELYEKTDKLD 206
Cdd:COG3063   3 LKLGDLEEAEEYYEKALELDP-----DNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYD 76

                        90
                ....*....|....*...
gi 52783465 207 EALEDYKSVLEKDPSVHQ 224
Cdd:COG3063  77 EALAYLERALELDPSALR 94
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 127-220 1.62e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.89  E-value: 1.62e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465 127 FKRGDYMEAESSYSQALQMCPacfqkDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLD 206
Cdd:COG4783  49 LQLGDLDEAIVLLHEALELDP-----DEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPD 123

                        90
                ....*....|....
gi 52783465 207 EALEDYKSVLEKDP 220
Cdd:COG4783 124 EAIAALEKALELDP 137
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
123-248 3.45e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 59.25  E-value: 3.45e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465 123 GNERFKRGDYMEAESSYSQALQMCPacfqkDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKT 202
Cdd:COG0457  83 GLALQALGRYEEALEDYDKALELDP-----DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKL 157

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*.
gi 52783465 203 DKLDEALEDYKSVLEKDPSVHQAREACMRLPKQIEERNERLKEEML 248
Cdd:COG0457 158 GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 127-245 6.18e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 58.59  E-value: 6.18e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465 127 FKRGDYMEAESSYSQALQMCPacfqkDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLD 206
Cdd:COG2956 121 EQEGDWEKAIEVLERLLKLGP-----ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYE 195

                        90       100       110
                ....*....|....*....|....*....|....*....
gi 52783465 207 EALEDYKSVLEKDPSVHQAREACMRLPKQIEERNERLKE 245
Cdd:COG2956 196 EAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALEL 234
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 123-220 1.12e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 55.40  E-value: 1.12e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465 123 GNERFKRGDYMEAESSYSQALQMCPacfqkDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKT 202
Cdd:COG4235  24 GRAYLRLGRYDEALAAYEKALRLDP-----DNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQ 98

                        90
                ....*....|....*...
gi 52783465 203 DKLDEALEDYKSVLEKDP 220
Cdd:COG4235  99 GDYAEAIAAWQKLLALLP 116
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
116-221 2.44e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 56.46  E-value: 2.44e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465 116 SAKLKEEGNERFKRGDYMEAESSYSQALQMCPacfqkDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRR 195
Cdd:COG4785  39 IALADLALALAAAALAAAALAAERIDRALALP-----DLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNR 113

                        90       100
                ....*....|....*....|....*.
gi 52783465 196 AELYEKTDKLDEALEDYKSVLEKDPS 221
Cdd:COG4785 114 GLAYLLLGDYDAALEDFDRALELDPD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 121-245 3.09e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.43  E-value: 3.09e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465 121 EEGNERFKRGDYMEAESSYSQALQMCPacfqkDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYE 200
Cdd:COG4783   9 ALAQALLLAGDYDEAEALLEKALELDP-----DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*...
gi 52783465 201 KTDKLDEALEDYKSVLEKDP---SVHQAREACMRLPKQIEERNERLKE 245
Cdd:COG4783  84 KAGDYDEALALLEKALKLDPehpEAYLRLARAYRALGRPDEAIAALEK 131
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
160-225 4.89e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 55.78  E-value: 4.89e-09
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 52783465 160 NRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALEDYKSVLEKDPSVHQA 225
Cdd:COG0457  13 NLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA 78
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 117-247 2.35e-08

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 54.41  E-value: 2.35e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465  117 AKLKEEGNERFKRGDYMEAESSYSQALQMCPACfqkdrSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRA 196
Cdd:PLN03088   3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN-----AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKG 77

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 52783465  197 ELYEKtdkldeaLEDY---KSVLEKDPSVHQAREacmRLPKQIEERNERLKEEM 247
Cdd:PLN03088  78 TACMK-------LEEYqtaKAALEKGASLAPGDS---RFTKLIKECDEKIAEEE 121
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 127-232 1.75e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 48.83  E-value: 1.75e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465 127 FKRGDYMEAESSYSQALQMCPACFQKDRsVLFsNRAAARMKQDKKETAITDCSKAIQLNPTYIR---AILRRAELYEKTD 203
Cdd:COG1729   4 LKAGDYDEAIAAFKAFLKRYPNSPLAPD-ALY-WLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELG 81

                        90       100
                ....*....|....*....|....*....
gi 52783465 204 KLDEALEDYKSVLEKDPSVHQAREACMRL 232
Cdd:COG1729  82 DYDKARATLEELIKKYPDSEAAKEARARL 110
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 127-220 1.33e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 49.70  E-value: 1.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465   127 FKRGDYMEAESSYSQALQMCPACFqkdrSVLFsNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLD 206
Cdd:TIGR02917 476 LGKGDLAKAREAFEKALSIEPDFF----PAAA-NLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE 550

                          90
                  ....*....|....
gi 52783465   207 EALEDYKSVLEKDP 220
Cdd:TIGR02917 551 EAVAWLEKAAELNP 564
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 162-226 3.85e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 45.38  E-value: 3.85e-06
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 52783465 162 AAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALEDYKSVLEKDPSVHQAR 226
Cdd:COG4235  24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEAL 88
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 121-232 5.71e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.65  E-value: 5.71e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465 121 EEGNERFKRGDYMEAESSYSQALQMCPacfqKDRSVLFsNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYE 200
Cdd:COG2956  13 FKGLNYLLNGQPDKAIDLLEEALELDP----ETVEAHL-ALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87

                        90       100       110
                ....*....|....*....|....*....|..
gi 52783465 201 KTDKLDEALEDYKSVLEKDPSVHQAREACMRL 232
Cdd:COG2956  88 KAGLLDRAEELLEKLLELDPDDAEALRLLAEI 119
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 123-220 6.14e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.65  E-value: 6.14e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465 123 GNERFKRGDYMEAESSYSQALQMCPacfqkDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKT 202
Cdd:COG2956  49 GNLYRRRGEYDRAIRIHQKLLERDP-----DRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQE 123

                        90
                ....*....|....*...
gi 52783465 203 DKLDEALEDYKSVLEKDP 220
Cdd:COG2956 124 GDWEKAIEVLERLLKLGP 141
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 161-226 8.92e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 44.95  E-value: 8.92e-06
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 52783465 161 RAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALEDYKSVLEKDPSVHQAR 226
Cdd:COG5010  60 SDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAY 125
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
164-226 5.83e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.31  E-value: 5.83e-05
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 52783465 164 ARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALEdYKSVLEKDPSVHQAR 226
Cdd:COG3063   1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEAL 62
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
123-214 1.23e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 42.59  E-value: 1.23e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465 123 GNERFKRGDYMEAESSYSQALQMCPacfQKDRSVLfsNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKT 202
Cdd:COG4785 114 GLAYLLLGDYDAALEDFDRALELDP---DYAYAYL--NRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKL 188

                        90
                ....*....|..
gi 52783465 203 DKlDEALEDYKS 214
Cdd:COG4785 189 DP-EKALALLLE 199
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
123-217 3.47e-04

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 41.02  E-value: 3.47e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465 123 GNERFKRGDYMEAESSYSQALQmcpACFQKDRSVLFSnRAAARMKQDKKETAITDCSKAIQLNPTY--IRAILRRAELYE 200
Cdd:COG4700  96 ADALLELGRYDEAIELYEEALT---GIFADDPHILLG-LAQALFELGRYAEALETLEKLIAKNPDFksSDAHLLYARALE 171

                        90
                ....*....|....*..
gi 52783465 201 KTDKLDEALEDYKSVLE 217
Cdd:COG4700 172 ALGDLEAAEAELEALAR 188
TPR_1 pfam00515
Tetratricopeptide repeat;
158-188 4.41e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.02  E-value: 4.41e-04
                          10        20        30
                  ....*....|....*....|....*....|.
gi 52783465   158 FSNRAAARMKQDKKETAITDCSKAIQLNPTY 188
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 127-219 4.93e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.87  E-value: 4.93e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465 127 FKRGDYMEAESSYSQALQMCPacfqkDRSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTyIRAILRRAELYEKTDKLD 206
Cdd:COG2956 189 LEQGDYEEAIAALERALEQDP-----DYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLE 262

                        90
                ....*....|...
gi 52783465 207 EALEDYKSVLEKD 219
Cdd:COG2956 263 AALALLERQLRRH 275
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
182-225 8.20e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.99  E-value: 8.20e-04
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....
gi 52783465 182 IQLNPTYIRAILRRAELYEKTDKLDEALEDYKSVLEKDPSVHQA 225
Cdd:COG0457   1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEA 44
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 189-221 8.62e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 8.62e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 52783465    189 IRAILRRAELYEKTDKLDEALEDYKSVLEKDPS 221
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 123-250 8.65e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 40.84  E-value: 8.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465   123 GNERFKRGDYMEAESSYSQALQmcpacfqKDRSVLFSNRAAARMK--QDKKETAITDCSKAIQLNPTYIRAILRRAELYE 200
Cdd:TIGR02917 132 GLAYLGLGQLELAQKSYEQALA-------IDPRSLYAKLGLAQLAlaENRFDEARALIDEVLTADPGNVDALLLKGDLLL 204

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 52783465   201 KTDKLDEALEDYKSVLE---KDPSVHqAREACMRLPKQIEERNERLKEEMLGK 250
Cdd:TIGR02917 205 SLGNIELALAAYRKAIAlrpNNIAVL-LALATILIEAGEFEEAEKHADALLKK 256
TPR_1 pfam00515
Tetratricopeptide repeat;
189-221 1.49e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.47  E-value: 1.49e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 52783465   189 IRAILRRAELYEKTDKLDEALEDYKSVLEKDPS 221
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 162-237 2.90e-03

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 38.64  E-value: 2.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 52783465  162 AAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALEDYKSVLEKDPS-----VHQAREACMRLPKQI 236
Cdd:PRK11788 187 AQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEylsevLPKLMECYQALGDEA 266


                 .
gi 52783465  237 E 237
Cdd:PRK11788 267 E 267
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 158-188 3.55e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 34.34  E-value: 3.55e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 52783465    158 FSNRAAARMKQDKKETAITDCSKAIQLNPTY 188
Cdd:smart00028   4 LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 174-220 6.65e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 36.14  E-value: 6.65e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*..
gi 52783465 174 AITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALEDYKSVLEKDP 220
Cdd:COG4235   2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDP 48
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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