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Conserved domains on  [gi|38258240|sp|Q9D273|]
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RecName: Full=Corrinoid adenosyltransferase MMAB; AltName: Full=ATP:co(I)rrinoid adenosyltransferase MMAB; AltName: Full=Methylmalonic aciduria type B homolog; Flags: Precursor

Protein Classification

ATP:cob(I)alamin adenosyltransferase( domain architecture ID 10487543)

ATP:cob(I)alamin adenosyltransferase catalyzes the final step in the conversion of cyanocobalamin (vitamin B12) to adenosylcobalamin, catalyzing the transfer of the adenosyl moiety from ATP to cobalamin

EC:  2.5.1.17
PubMed:  11160088
SCOP:  4003724

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Cob_adeno_trans pfam01923
Cobalamin adenosyltransferase; Cobalamin adenosyltransferase This family contains the gene ...
53-221 2.55e-79

Cobalamin adenosyltransferase; Cobalamin adenosyltransferase This family contains the gene products of PduO and EutT which are both cobalamin adenosyltransferases. PduO is a protein with ATP:cob(I)alamin adenosyltransferase activity. The main role of this protein is the conversion of inactive cobalamins to AdoCbl for 1,2-propanediol degradation.The EutT enzyme appears to be an adenosyl transferase, converting CNB12 to AdoB12.


:

Pssm-ID: 460384  Cd Length: 163  Bit Score: 235.08  E-value: 2.55e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38258240    53 YTKTGDKGFSSTFTGERRPKDDQVFEAVGTTDELSSAIGFAMELVTEkgHMFAEELQKIQCMLQDVGSALATPRSSARea 132
Cdd:pfam01923   1 YTRTGDKGTTSLGGGERVPKDDPRVEAYGTVDELNSAIGLARALLPD--EDLRELLERIQNDLFDLGADLATPGPKEP-- 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38258240   133 hlkHTAFQEGPVLELERWIDKYSSQLPPLKAFILPSGGKSSSALHFCRAVCRRAERRVVPLVQM-GETDANVAKFLNRLS 211
Cdd:pfam01923  77 ---KLRITEEDVERLEKEIDEYNAELPPLKSFILPGGSPAAAALHVARTVCRRAERRAVALAEEeEEAVRDVLKYLNRLS 153
                         170
                  ....*....|
gi 38258240   212 DYLFTVARYA 221
Cdd:pfam01923 154 DLLFVLARYA 163
 
Name Accession Description Interval E-value
Cob_adeno_trans pfam01923
Cobalamin adenosyltransferase; Cobalamin adenosyltransferase This family contains the gene ...
53-221 2.55e-79

Cobalamin adenosyltransferase; Cobalamin adenosyltransferase This family contains the gene products of PduO and EutT which are both cobalamin adenosyltransferases. PduO is a protein with ATP:cob(I)alamin adenosyltransferase activity. The main role of this protein is the conversion of inactive cobalamins to AdoCbl for 1,2-propanediol degradation.The EutT enzyme appears to be an adenosyl transferase, converting CNB12 to AdoB12.


Pssm-ID: 460384  Cd Length: 163  Bit Score: 235.08  E-value: 2.55e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38258240    53 YTKTGDKGFSSTFTGERRPKDDQVFEAVGTTDELSSAIGFAMELVTEkgHMFAEELQKIQCMLQDVGSALATPRSSARea 132
Cdd:pfam01923   1 YTRTGDKGTTSLGGGERVPKDDPRVEAYGTVDELNSAIGLARALLPD--EDLRELLERIQNDLFDLGADLATPGPKEP-- 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38258240   133 hlkHTAFQEGPVLELERWIDKYSSQLPPLKAFILPSGGKSSSALHFCRAVCRRAERRVVPLVQM-GETDANVAKFLNRLS 211
Cdd:pfam01923  77 ---KLRITEEDVERLEKEIDEYNAELPPLKSFILPGGSPAAAALHVARTVCRRAERRAVALAEEeEEAVRDVLKYLNRLS 153
                         170
                  ....*....|
gi 38258240   212 DYLFTVARYA 221
Cdd:pfam01923 154 DLLFVLARYA 163
PduO COG2096
Cob(II)alamin adenosyltransferase [Coenzyme transport and metabolism]; Cob(II)alamin ...
51-234 6.37e-77

Cob(II)alamin adenosyltransferase [Coenzyme transport and metabolism]; Cob(II)alamin adenosyltransferase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 441699  Cd Length: 180  Bit Score: 229.63  E-value: 6.37e-77
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38258240  51 KIYTKTGDKGFSSTFTGERRPKDDQVFEAVGTTDELSSAIGFAmeLVTEKGHMFAEELQKIQCMLQDVGSALATPRSSAr 130
Cdd:COG2096   2 KIYTRTGDKGTTGLGGGSRVSKDDPRVEAYGTVDELNSAIGLA--RALLLDEDLRELLERIQNDLFDLGADLATPGEKR- 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38258240 131 eahlKHTAFQEGPVLELERWIDKYSSQLPPLKAFILPSGGKSSSALHFCRAVCRRAERRVVPLVQMGETDANVAKFLNRL 210
Cdd:COG2096  79 ----PPLRITEEDVERLEEEIDELNAELPPLKSFILPGGSPAAAALHVARTVCRRAERRLVALAEEEPVNPEVLKYLNRL 154
                       170       180
                ....*....|....*....|....
gi 38258240 211 SDYLFTVARYAAMKEGSQEKIYKK 234
Cdd:COG2096 155 SDLLFVLARVANKRAGVAEVLWKP 178
PduO_Nterm TIGR00636
ATP:cob(I)alamin adenosyltransferase; This model represents as ATP:cob(I)alamin ...
53-233 1.30e-57

ATP:cob(I)alamin adenosyltransferase; This model represents as ATP:cob(I)alamin adenosyltransferase family corresponding to the N-terminal half of Salmonella PduO, a 1,2-propanediol utilization protein that probably is bifunctional. PduO represents one of at least three families of ATP:corrinoid adenosyltransferase: others are CobA (which partially complements PduO) and EutT. It was not clear originally whether ATP:cob(I)alamin adenosyltransferase activity resides in the N-terminal region of PduO, modeled here, but this has now become clear from the characterization of MeaD from Methylobacterium extorquens. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 213544  Cd Length: 171  Bit Score: 180.61  E-value: 1.30e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38258240    53 YTKTGDKGFSSTFTGERRPKDDQVFEAVGTTDELSSAIGFAMELVTEKghMFAEELQKIQCMLQDVGSALATPRssarea 132
Cdd:TIGR00636   1 YTKTGDKGQTKLAGGDRVGKDSPRVEAYGTLDELNSFIGVALSLLKWE--DLKEDLERIQNDLFDIGGDLATPG------ 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38258240   133 hlKHTAFQEGPVLELERWIDKYSSQLPPLKAFILPSGGKSSSALHFCRAVCRRAERRVVPLVQMGETDANVAKFLNRLSD 212
Cdd:TIGR00636  73 --DTKKITEEDVKWLEERIDQYRKELPPLKLFVLPGGTPAAAFLHVARTVARRAERRVVALLKEEEINEVVLVYLNRLSD 150
                         170       180
                  ....*....|....*....|.
gi 38258240   213 YLFTVARYAAMKEGSQEKIYK 233
Cdd:TIGR00636 151 LLFVLARVVNKRSGVPEVIWE 171
 
Name Accession Description Interval E-value
Cob_adeno_trans pfam01923
Cobalamin adenosyltransferase; Cobalamin adenosyltransferase This family contains the gene ...
53-221 2.55e-79

Cobalamin adenosyltransferase; Cobalamin adenosyltransferase This family contains the gene products of PduO and EutT which are both cobalamin adenosyltransferases. PduO is a protein with ATP:cob(I)alamin adenosyltransferase activity. The main role of this protein is the conversion of inactive cobalamins to AdoCbl for 1,2-propanediol degradation.The EutT enzyme appears to be an adenosyl transferase, converting CNB12 to AdoB12.


Pssm-ID: 460384  Cd Length: 163  Bit Score: 235.08  E-value: 2.55e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38258240    53 YTKTGDKGFSSTFTGERRPKDDQVFEAVGTTDELSSAIGFAMELVTEkgHMFAEELQKIQCMLQDVGSALATPRSSARea 132
Cdd:pfam01923   1 YTRTGDKGTTSLGGGERVPKDDPRVEAYGTVDELNSAIGLARALLPD--EDLRELLERIQNDLFDLGADLATPGPKEP-- 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38258240   133 hlkHTAFQEGPVLELERWIDKYSSQLPPLKAFILPSGGKSSSALHFCRAVCRRAERRVVPLVQM-GETDANVAKFLNRLS 211
Cdd:pfam01923  77 ---KLRITEEDVERLEKEIDEYNAELPPLKSFILPGGSPAAAALHVARTVCRRAERRAVALAEEeEEAVRDVLKYLNRLS 153
                         170
                  ....*....|
gi 38258240   212 DYLFTVARYA 221
Cdd:pfam01923 154 DLLFVLARYA 163
PduO COG2096
Cob(II)alamin adenosyltransferase [Coenzyme transport and metabolism]; Cob(II)alamin ...
51-234 6.37e-77

Cob(II)alamin adenosyltransferase [Coenzyme transport and metabolism]; Cob(II)alamin adenosyltransferase is part of the Pathway/BioSystem: Cobalamine/B12 biosynthesis


Pssm-ID: 441699  Cd Length: 180  Bit Score: 229.63  E-value: 6.37e-77
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38258240  51 KIYTKTGDKGFSSTFTGERRPKDDQVFEAVGTTDELSSAIGFAmeLVTEKGHMFAEELQKIQCMLQDVGSALATPRSSAr 130
Cdd:COG2096   2 KIYTRTGDKGTTGLGGGSRVSKDDPRVEAYGTVDELNSAIGLA--RALLLDEDLRELLERIQNDLFDLGADLATPGEKR- 78
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38258240 131 eahlKHTAFQEGPVLELERWIDKYSSQLPPLKAFILPSGGKSSSALHFCRAVCRRAERRVVPLVQMGETDANVAKFLNRL 210
Cdd:COG2096  79 ----PPLRITEEDVERLEEEIDELNAELPPLKSFILPGGSPAAAALHVARTVCRRAERRLVALAEEEPVNPEVLKYLNRL 154
                       170       180
                ....*....|....*....|....
gi 38258240 211 SDYLFTVARYAAMKEGSQEKIYKK 234
Cdd:COG2096 155 SDLLFVLARVANKRAGVAEVLWKP 178
PduO_Nterm TIGR00636
ATP:cob(I)alamin adenosyltransferase; This model represents as ATP:cob(I)alamin ...
53-233 1.30e-57

ATP:cob(I)alamin adenosyltransferase; This model represents as ATP:cob(I)alamin adenosyltransferase family corresponding to the N-terminal half of Salmonella PduO, a 1,2-propanediol utilization protein that probably is bifunctional. PduO represents one of at least three families of ATP:corrinoid adenosyltransferase: others are CobA (which partially complements PduO) and EutT. It was not clear originally whether ATP:cob(I)alamin adenosyltransferase activity resides in the N-terminal region of PduO, modeled here, but this has now become clear from the characterization of MeaD from Methylobacterium extorquens. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 213544  Cd Length: 171  Bit Score: 180.61  E-value: 1.30e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38258240    53 YTKTGDKGFSSTFTGERRPKDDQVFEAVGTTDELSSAIGFAMELVTEKghMFAEELQKIQCMLQDVGSALATPRssarea 132
Cdd:TIGR00636   1 YTKTGDKGQTKLAGGDRVGKDSPRVEAYGTLDELNSFIGVALSLLKWE--DLKEDLERIQNDLFDIGGDLATPG------ 72
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 38258240   133 hlKHTAFQEGPVLELERWIDKYSSQLPPLKAFILPSGGKSSSALHFCRAVCRRAERRVVPLVQMGETDANVAKFLNRLSD 212
Cdd:TIGR00636  73 --DTKKITEEDVKWLEERIDQYRKELPPLKLFVLPGGTPAAAFLHVARTVARRAERRVVALLKEEEINEVVLVYLNRLSD 150
                         170       180
                  ....*....|....*....|.
gi 38258240   213 YLFTVARYAAMKEGSQEKIYK 233
Cdd:TIGR00636 151 LLFVLARVVNKRSGVPEVIWE 171
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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