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Conserved domains on  [gi|81905425|sp|Q9D646|]
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RecName: Full=Keratin, type I cuticular Ha4; AltName: Full=Hair keratin, type I Ha4; AltName: Full=Keratin-34; Short=K34

Protein Classification

intermediate filament family protein( domain architecture ID 11981676)

intermediate filament (IF) family protein is a primordial component of the cytoskeleton and the nuclear envelope; such as type I keratins

CATH:  1.20.5.170
Gene Ontology:  GO:0005882

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Filament pfam00038
Intermediate filament protein;
55-366 2.72e-135

Intermediate filament protein;


:

Pssm-ID: 459643 [Multi-domain]  Cd Length: 313  Bit Score: 389.28  E-value: 2.72e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    55 NEKETMQFLNDRLASYMEKVRQLERENAELECRIQERNQQQDPLVCPAYQAYFRTIEELQQKILCAKSENARLVVQIDNA 134
Cdd:pfam00038   1 NEKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKKGAEPSRLYSLYEKEIEDLRRQLDTLTVERARLQLELDNL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425   135 KLASDDFRTKYQTELSMRQLVEADINSLRRILDELTLCKSDLEAQVESLREELLCLKKNHEEEVNTLRCQLGD-RLNVEV 213
Cdd:pfam00038  81 RLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVSDtQVNVEM 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425   214 DAAPTVDLNRVLNETRCQYEALVETNRREVEEWFTTQSEELNKQVVSSSEQLQSCQAEIIELRRTVNALEIELQAQHCMR 293
Cdd:pfam00038 161 DAARKLDLTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQK 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81905425   294 NSLENTLTESEARYSSQLSQVQCLITNVESQLGEIRADLERQNQEYQVLLDVRARLECEINTYRSLLESEDCN 366
Cdd:pfam00038 241 ASLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313
 
Name Accession Description Interval E-value
Filament pfam00038
Intermediate filament protein;
55-366 2.72e-135

Intermediate filament protein;


Pssm-ID: 459643 [Multi-domain]  Cd Length: 313  Bit Score: 389.28  E-value: 2.72e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    55 NEKETMQFLNDRLASYMEKVRQLERENAELECRIQERNQQQDPLVCPAYQAYFRTIEELQQKILCAKSENARLVVQIDNA 134
Cdd:pfam00038   1 NEKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKKGAEPSRLYSLYEKEIEDLRRQLDTLTVERARLQLELDNL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425   135 KLASDDFRTKYQTELSMRQLVEADINSLRRILDELTLCKSDLEAQVESLREELLCLKKNHEEEVNTLRCQLGD-RLNVEV 213
Cdd:pfam00038  81 RLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVSDtQVNVEM 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425   214 DAAPTVDLNRVLNETRCQYEALVETNRREVEEWFTTQSEELNKQVVSSSEQLQSCQAEIIELRRTVNALEIELQAQHCMR 293
Cdd:pfam00038 161 DAARKLDLTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQK 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81905425   294 NSLENTLTESEARYSSQLSQVQCLITNVESQLGEIRADLERQNQEYQVLLDVRARLECEINTYRSLLESEDCN 366
Cdd:pfam00038 241 ASLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
110-362 2.63e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 65.46  E-value: 2.63e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    110 IEELQQKILCAKSENARLVVQIDNAKLASDDFRTKyqtelsmRQLVEADINSLRRILDELTLCKSDLEAQVESLREELLC 189
Cdd:TIGR02168  241 LEELQEELKEAEEELEELTAELQELEEKLEELRLE-------VSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    190 LKKNhEEEVNTLRCQLGDRLnvEVDAAPTVDLNRVLNETRCQYEALVETNRREVEEWF---------TTQSEELNKQVVS 260
Cdd:TIGR02168  314 LERQ-LEELEAQLEELESKL--DELAEELAELEEKLEELKEELESLEAELEELEAELEelesrleelEEQLETLRSKVAQ 390
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    261 SSEQLQSCQAEIIELRRTVNALEIELQAQHCMRNSLENTLTESE-ARYSSQLSQVQCLITNVESQLGEIRADLERQNQEY 339
Cdd:TIGR02168  391 LELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElKELQAELEELEEELEELQEELERLEEALEELREEL 470
                          250       260
                   ....*....|....*....|...
gi 81905425    340 QVLLDVRARLECEINTYRSLLES 362
Cdd:TIGR02168  471 EEAEQALDAAERELAQLQARLDS 493
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
65-360 1.18e-07

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 53.77  E-value: 1.18e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425   65 DRLASYMEKVRQLERENAELECRIQERNQQQDplvcpAYQAYFRTIEELQQ------KILCAKSENARLVVQIDNAKLAS 138
Cdd:COG4913  610 AKLAALEAELAELEEELAEAEERLEALEAELD-----ALQERREALQRLAEyswdeiDVASAEREIAELEAELERLDASS 684
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425  139 DDFRtkyqtELSmRQL--VEADINSLRRILDELTLCKSDLEAQVESLREELLCLKKNHEEEVNTLRCQLGDRLnvevdaa 216
Cdd:COG4913  685 DDLA-----ALE-EQLeeLEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALL------- 751
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425  217 ptvdlnrvlnETRCQyEALVETNRREVEEWFTTQSEELNKQVVSSSEQLQSCQAEII--------ELRRTVNALEiELQA 288
Cdd:COG4913  752 ----------EERFA-AALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNrewpaetaDLDADLESLP-EYLA 819
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425  289 qhcMRNSLENT-LTESEARYSSQLSQ-----VQCLITNVESQLGEIRADLERQNQE-----------YQvlLDVRARLEC 351
Cdd:COG4913  820 ---LLDRLEEDgLPEYEERFKELLNEnsiefVADLLSKLRRAIREIKERIDPLNDSlkripfgpgryLR--LEARPRPDP 894

                 ....*....
gi 81905425  352 EINTYRSLL 360
Cdd:COG4913  895 EVREFRQEL 903
Spc7 smart00787
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ...
159-290 2.62e-03

Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.


Pssm-ID: 197874 [Multi-domain]  Cd Length: 312  Bit Score: 39.62  E-value: 2.62e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    159 INSLRRILDE-LTLCKSDLE------AQVESLREELLCLKKNHEEEVNTLRcqlgdRLNVEVDAAPTVDLNRVLNETRCQ 231
Cdd:smart00787 142 LEGLKEGLDEnLEGLKEDYKllmkelELLNSIKPKLRDRKDALEEELRQLK-----QLEDELEDCDPTELDRAKEKLKKL 216
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81905425    232 YEALVEtNRREVEEwFTTQSEELNKQVVSSSEQLQSCQAEIIELRRTVN------ALEIE-LQAQH 290
Cdd:smart00787 217 LQEIMI-KVKKLEE-LEEELQELESKIEDLTNKKSELNTEIAEAEKKLEqcrgftFKEIEkLKEQL 280
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
65-338 5.23e-03

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 38.87  E-value: 5.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425   65 DRLASYMEKVRQLERENAELECRIQERNQQQDPLVCPAYQAyfRTIEELQQKILCAKS--ENARLVVQIDNAKLAS---- 138
Cdd:PRK02224 468 ETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAE--DRIERLEERREDLEEliAERRETIEEKRERAEElrer 545
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425  139 -DDFRTKYQTELSMRQLVEADINSLRRILDELTLCKSDLEAQVESLR--EELLCLKKNHEEEVNTLRCQLGDRLNVEVDA 215
Cdd:PRK02224 546 aAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLEriRTLLAAIADAEDEIERLREKREALAELNDER 625
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425  216 APTVDLNRvlnETRCQYEALVETNRREVEEWFTTQSEELNKQVvssSEQLQSCQAEIIELRRTVNALEIELQAQHCMRN- 294
Cdd:PRK02224 626 RERLAEKR---ERKRELEAEFDEARIEEAREDKERAEEYLEQV---EEKLDELREERDDLQAEIGAVENELEELEELREr 699
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 81905425  295 --SLENTLTESEARYSSqlsqvqclITNVESQLGEIRADLERQNQE 338
Cdd:PRK02224 700 reALENRVEALEALYDE--------AEELESMYGDLRAELRQRNVE 737
 
Name Accession Description Interval E-value
Filament pfam00038
Intermediate filament protein;
55-366 2.72e-135

Intermediate filament protein;


Pssm-ID: 459643 [Multi-domain]  Cd Length: 313  Bit Score: 389.28  E-value: 2.72e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    55 NEKETMQFLNDRLASYMEKVRQLERENAELECRIQERNQQQDPLVCPAYQAYFRTIEELQQKILCAKSENARLVVQIDNA 134
Cdd:pfam00038   1 NEKEQLQELNDRLASYIDKVRFLEQQNKLLETKISELRQKKGAEPSRLYSLYEKEIEDLRRQLDTLTVERARLQLELDNL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425   135 KLASDDFRTKYQTELSMRQLVEADINSLRRILDELTLCKSDLEAQVESLREELLCLKKNHEEEVNTLRCQLGD-RLNVEV 213
Cdd:pfam00038  81 RLAAEDFRQKYEDELNLRTSAENDLVGLRKDLDEATLARVDLEAKIESLKEELAFLKKNHEEEVRELQAQVSDtQVNVEM 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425   214 DAAPTVDLNRVLNETRCQYEALVETNRREVEEWFTTQSEELNKQVVSSSEQLQSCQAEIIELRRTVNALEIELQAQHCMR 293
Cdd:pfam00038 161 DAARKLDLTSALAEIRAQYEEIAAKNREEAEEWYQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLKKQK 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81905425   294 NSLENTLTESEARYSSQLSQVQCLITNVESQLGEIRADLERQNQEYQVLLDVRARLECEINTYRSLLESEDCN 366
Cdd:pfam00038 241 ASLERQLAETEERYELQLADYQELISELEAELQETRQEMARQLREYQELLNVKLALDIEIATYRKLLEGEECR 313
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
110-362 2.63e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 65.46  E-value: 2.63e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    110 IEELQQKILCAKSENARLVVQIDNAKLASDDFRTKyqtelsmRQLVEADINSLRRILDELTLCKSDLEAQVESLREELLC 189
Cdd:TIGR02168  241 LEELQEELKEAEEELEELTAELQELEEKLEELRLE-------VSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    190 LKKNhEEEVNTLRCQLGDRLnvEVDAAPTVDLNRVLNETRCQYEALVETNRREVEEWF---------TTQSEELNKQVVS 260
Cdd:TIGR02168  314 LERQ-LEELEAQLEELESKL--DELAEELAELEEKLEELKEELESLEAELEELEAELEelesrleelEEQLETLRSKVAQ 390
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    261 SSEQLQSCQAEIIELRRTVNALEIELQAQHCMRNSLENTLTESE-ARYSSQLSQVQCLITNVESQLGEIRADLERQNQEY 339
Cdd:TIGR02168  391 LELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElKELQAELEELEEELEELQEELERLEEALEELREEL 470
                          250       260
                   ....*....|....*....|...
gi 81905425    340 QVLLDVRARLECEINTYRSLLES 362
Cdd:TIGR02168  471 EEAEQALDAAERELAQLQARLDS 493
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
63-363 6.93e-09

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 57.76  E-value: 6.93e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425     63 LNDRLASYMEKVRQLERENAELECRIQERNQQQDpLVCPAYQAYFRTIEELQQKILCAKSENARLVVQIDNAKLASDDFR 142
Cdd:TIGR02168  696 LEKALAELRKELEELEEELEQLRKELEELSRQIS-ALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAE 774
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    143 TKYQTELSMRQLVEADINSLRRILDELTLCKSDLEAQVESLREELLclkknheeeVNTLRCQlgdrlNVEVDAAPTVDLN 222
Cdd:TIGR02168  775 EELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA---------NLRERLE-----SLERRIAATERRL 840
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    223 RVLNETRCQYEALVETNRREVEEwFTTQSEELNKQVVSSSEQLQSCQAEIIELRRTVNALEIELqaqhcmrNSLENTLTE 302
Cdd:TIGR02168  841 EDLEEQIEELSEDIESLAAEIEE-LEELIEELESELEALLNERASLEEALALLRSELEELSEEL-------RELESKRSE 912
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 81905425    303 SEARYSSQLSQVQCLITNVESQLGEIRADLERQNQEYQVLLDVRARLECEINTYRSLLESE 363
Cdd:TIGR02168  913 LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRR 973
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
65-360 1.18e-07

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 53.77  E-value: 1.18e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425   65 DRLASYMEKVRQLERENAELECRIQERNQQQDplvcpAYQAYFRTIEELQQ------KILCAKSENARLVVQIDNAKLAS 138
Cdd:COG4913  610 AKLAALEAELAELEEELAEAEERLEALEAELD-----ALQERREALQRLAEyswdeiDVASAEREIAELEAELERLDASS 684
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425  139 DDFRtkyqtELSmRQL--VEADINSLRRILDELTLCKSDLEAQVESLREELLCLKKNHEEEVNTLRCQLGDRLnvevdaa 216
Cdd:COG4913  685 DDLA-----ALE-EQLeeLEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALL------- 751
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425  217 ptvdlnrvlnETRCQyEALVETNRREVEEWFTTQSEELNKQVVSSSEQLQSCQAEII--------ELRRTVNALEiELQA 288
Cdd:COG4913  752 ----------EERFA-AALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNrewpaetaDLDADLESLP-EYLA 819
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425  289 qhcMRNSLENT-LTESEARYSSQLSQ-----VQCLITNVESQLGEIRADLERQNQE-----------YQvlLDVRARLEC 351
Cdd:COG4913  820 ---LLDRLEEDgLPEYEERFKELLNEnsiefVADLLSKLRRAIREIKERIDPLNDSlkripfgpgryLR--LEARPRPDP 894

                 ....*....
gi 81905425  352 EINTYRSLL 360
Cdd:COG4913  895 EVREFRQEL 903
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
63-304 1.56e-07

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 53.52  E-value: 1.56e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425     63 LNDRLASYMEKVRQLERENAELECRIQERNQqqdplvcpAYQAYFRTIEELQQKILCAKSENARLVVQIDNAKLASDDF- 141
Cdd:TIGR02168  258 LTAELQELEEKLEELRLEVSELEEEIEELQK--------ELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELe 329
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    142 --RTKYQTELSMRQ----LVEADINSLRRILDELTLCKSDLEAQVESLREELLCLKKN---HEEEVNTLRCQLGdRLNVE 212
Cdd:TIGR02168  330 skLDELAEELAELEekleELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKvaqLELQIASLNNEIE-RLEAR 408
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    213 VDAApTVDLNRVLNETRCQYEALVETNRREVEEWFTTQSEELNK---QVVSSSEQLQSCQAEIIELRRTVNALEIELQAQ 289
Cdd:TIGR02168  409 LERL-EDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEElqeELERLEEALEELREELEEAEQALDAAERELAQL 487
                          250
                   ....*....|....*
gi 81905425    290 HCMRNSLENTLTESE 304
Cdd:TIGR02168  488 QARLDSLERLQENLE 502
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
77-361 2.13e-07

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 53.15  E-value: 2.13e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425     77 LERENAELECRIQERNQQqdplvcpaYQAYFRTIEELQQKILcAKSENARLVVQIDNAKLASDDFRTKYQTELSMRQLVE 156
Cdd:TIGR02169  249 LEEELEKLTEEISELEKR--------LEEIEQLLEELNKKIK-DLGEEEQLRVKEKIGELEAEIASLERSIAEKERELED 319
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    157 ADiNSLRRILDELtlckSDLEAQVESLREELlclkknheEEVNTLRCQLGDRLNvevdaaptvDLNRVLNETRCQYEALV 236
Cdd:TIGR02169  320 AE-ERLAKLEAEI----DKLLAEIEELEREI--------EEERKRRDKLTEEYA---------ELKEELEDLRAELEEVD 377
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    237 ETNRREVEEwfttqseelnkqVVSSSEQLQSCQAEIIELRRTVNALEIELQAQHCMRNSLENTLTESEAR---YSSQLSQ 313
Cdd:TIGR02169  378 KEFAETRDE------------LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKineLEEEKED 445
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*...
gi 81905425    314 VQCLITNVESQLGEIRADLERQNQEYQVLLDVRARLECEINTYRSLLE 361
Cdd:TIGR02169  446 KALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA 493
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
98-353 2.80e-07

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 52.07  E-value: 2.80e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425  98 LVCPAYQAYFRTIEELQQKIlcaksenARLVVQIDNAKLASDDFRTKYQTELSMRQLVEADINSLRRILDELTLCKSDLE 177
Cdd:COG4942  10 LLALAAAAQADAAAEAEAEL-------EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE 82
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425 178 AQVESLREELLCLKKNHEEevntLRCQLGDRLNVEVDAAPTVDLNRVLNEtrcqyEALVETNRREveEWFTTQSEELNKQ 257
Cdd:COG4942  83 AELAELEKEIAELRAELEA----QKEELAELLRALYRLGRQPPLALLLSP-----EDFLDAVRRL--QYLKYLAPARREQ 151
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425 258 VvsssEQLQSCQAEIIELRRTVNALEIELQAqhcmrnsLENTLTESEARYSSQLSQVQCLITNVESQLGEIRADLERQNQ 337
Cdd:COG4942 152 A----EELRADLAELAALRAELEAERAELEA-------LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQ 220
                       250
                ....*....|....*.
gi 81905425 338 EYQVLLDVRARLECEI 353
Cdd:COG4942 221 EAEELEALIARLEAEA 236
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
57-350 4.04e-07

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 51.94  E-value: 4.04e-07
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425  57 KETMQFLNDRLASYMEKVRQLEREnaelecriqernqqqdplvcpayqayfrtIEELQQKilcaksenaRLVVQIDNakl 136
Cdd:COG3206 174 RKALEFLEEQLPELRKELEEAEAA-----------------------------LEEFRQK---------NGLVDLSE--- 212
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425 137 asddfrtkyQTELSMRQLveadinslrrildeltlckSDLEAQVESLREELlclkknheEEVNTLRCQLGDRLNVEVDAA 216
Cdd:COG3206 213 ---------EAKLLLQQL-------------------SELESQLAEARAEL--------AEAEARLAALRAQLGSGPDAL 256
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425 217 PTVDLNRVLNETRCQYEALvETNRREVEEWFTtqseELNKQVVSSSEQLQSCQAEI-IELRRTVNALEIELQAQhcmrNS 295
Cdd:COG3206 257 PELLQSPVIQQLRAQLAEL-EAELAELSARYT----PNHPDVIALRAQIAALRAQLqQEAQRILASLEAELEAL----QA 327
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*
gi 81905425 296 LENTLTESEARYSSQLSQvqclITNVESQLGEIRADLERQNQEYQVLLdvrARLE 350
Cdd:COG3206 328 REASLQAQLAQLEARLAE----LPELEAELRRLEREVEVARELYESLL---QRLE 375
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
143-361 1.43e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 50.44  E-value: 1.43e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    143 TKYQT--ELSMRQLVEADINsLRRILDELtlckSDLEAQVESLREELLCLKKNHE--EEVNTLRCQL-GDRLNVEVDAAP 217
Cdd:TIGR02168  168 SKYKErrKETERKLERTREN-LDRLEDIL----NELERQLKSLERQAEKAERYKElkAELRELELALlVLRLEELREELE 242
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    218 TvdLNRVLNETRCQYEALvETNRREVEEwfttQSEELNKQVVSSSEQLQSCQAEIIELRRTVNALEIELQAQhcmrnsle 297
Cdd:TIGR02168  243 E--LQEELKEAEEELEEL-TAELQELEE----KLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQIL-------- 307
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 81905425    298 ntlTESEARYSSQLSQVQCLITNVESQLGEIRADLERQNQEYQVLLDVRARLECEINTYRSLLE 361
Cdd:TIGR02168  308 ---RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE 368
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
152-350 2.92e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 49.55  E-value: 2.92e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425 152 RQLVEADINSLRRILDELTLCKSDLEAQVESLREELLCLKKNHEEEVNTLRCQLGDRLNVEVDAAPTVDLNRVLNETRCQ 231
Cdd:COG1196 241 LEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEE 320
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425 232 YEALVETNRREVEEwFTTQSEELNKQVVSSSEQLQSCQAEIIELRRTVNALEIELQAqhcmRNSLENTLTESEARYSSQL 311
Cdd:COG1196 321 LEEELAELEEELEE-LEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE----AEEELEELAEELLEALRAA 395
                       170       180       190
                ....*....|....*....|....*....|....*....
gi 81905425 312 SQVQCLITNVESQLGEIRADLERQNQEYQVLLDVRARLE 350
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLERLEEELEELEEALAELE 434
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
56-350 4.75e-06

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 48.78  E-value: 4.75e-06
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425  56 EKETMQFLNDRLASYMEKVRQLERENAELECRIQERNQQqdplvcpayqayfrtIEELQQKILCAKSENARLVVQIDNAK 135
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELE---------------LEEAQAEEYELLAELARLEQDIARLE 308
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425 136 LASDDFRTKYQTELSMRQLVEADINSLRRILDELTLCKSDLEAQVESLREELlclkKNHEEEVNTLRCQLGDRLNVEVDA 215
Cdd:COG1196 309 ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL----AEAEEALLEAEAELAEAEEELEEL 384
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425 216 AptvdlNRVLNETRcqyEALVETNRREVEEwftTQSEELNKQVVSSSEQLQSCQAEIIELRRTVNALEIELQAQHCMRNS 295
Cdd:COG1196 385 A-----EELLEALR---AAAELAAQLEELE---EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAE 453
                       250       260       270       280       290
                ....*....|....*....|....*....|....*....|....*....|....*
gi 81905425 296 LENTLTESEARYSSQLSQvqclITNVESQLGEIRADLERQNQEYQVLLDVRARLE 350
Cdd:COG1196 454 LEEEEEALLELLAELLEE----AALLEAALAELLEELAEAAARLLLLLEAEADYE 504
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
63-358 1.29e-05

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 47.42  E-value: 1.29e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425     63 LNDRLASYMEKVRQLERENAE---LECRIQERNQQQDPLvcPAYQAYFRTIEELQQKILCAKSENARLV----VQIDN-A 134
Cdd:pfam15921  498 VSDLTASLQEKERAIEATNAEitkLRSRVDLKLQELQHL--KNEGDHLRNVQTECEALKLQMAEKDKVIeilrQQIENmT 575
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    135 KLASDDFRTKYQTELSMRQLvEADINSLRRILDELTLCKS-------DLEAQVESLREELLCLKKNHEEEVNTLR--CQL 205
Cdd:pfam15921  576 QLVGQHGRTAGAMQVEKAQL-EKEINDRRLELQEFKILKDkkdakirELEARVSDLELEKVKLVNAGSERLRAVKdiKQE 654
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    206 GDRLNVEVDAAPTvDLNRVLNEtrcqYEALVETnrreveewFTTQSEELNKQVVSSSEQLQSCQAEIIELRRTVNALeiE 285
Cdd:pfam15921  655 RDQLLNEVKTSRN-ELNSLSED----YEVLKRN--------FRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSM--E 719
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81905425    286 LQAQHCMRNS--LENTLTESEARYSSQLSQVQCL---ITNVESQLGEIRADLERQNQEYQVLLDVRARLECEINTYRS 358
Cdd:pfam15921  720 GSDGHAMKVAmgMQKQITAKRGQIDALQSKIQFLeeaMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRS 797
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
68-361 1.38e-05

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 47.42  E-value: 1.38e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425     68 ASYMEKVRQLERENAELECRIQErnqqqdplvcpAYQAYFRTIEELQQKILCAKSENARLVVQIDNAKLASDDFRTKYQT 147
Cdd:pfam15921  313 SMYMRQLSDLESTVSQLRSELRE-----------AKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQK 381
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    148 ----------ELSM-----RQLVEAD------INSLRRILDELTLCKSDLEAQVESLREE--------LLCLKKNHE--E 196
Cdd:pfam15921  382 lladlhkrekELSLekeqnKRLWDRDtgnsitIDHLRRELDDRNMEVQRLEALLKAMKSEcqgqmerqMAAIQGKNEslE 461
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    197 EVNTLRCQLgdrlnvevdaAPTVDLNRVLNETRCQYEALVETNRREVEEWFTTQSEElnkqvvssSEQLQSCQAEIIELR 276
Cdd:pfam15921  462 KVSSLTAQL----------ESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEK--------ERAIEATNAEITKLR 523
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    277 RTVNALEIELQAQHCMRNSLENTLTESEArYSSQLSQVQCLITNVESQLGEIRADLERQNQEYQVLLDVRARLECEINTY 356
Cdd:pfam15921  524 SRVDLKLQELQHLKNEGDHLRNVQTECEA-LKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDR 602

                   ....*
gi 81905425    357 RSLLE 361
Cdd:pfam15921  603 RLELQ 607
HEC1 COG5185
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ...
54-362 3.66e-05

Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 444066 [Multi-domain]  Cd Length: 594  Bit Score: 45.72  E-value: 3.66e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425  54 GNEKETMQFLNDRLASYMEKVRQLERENAELECRIQERNQQQDplvcpaYQAYFRTIE---ELQQKILCAKSENARLVVQ 130
Cdd:COG5185 271 GENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATES------LEEQLAAAEaeqELEESKRETETGIQNLTAE 344
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425 131 IDNAKLASDDFRTKYQTELSmrQLVEadINSLRRILDELtlckSDLEAQVESLREELLCLKKNHEEEVNTLRCQLGDRL- 209
Cdd:COG5185 345 IEQGQESLTENLEAIKEEIE--NIVG--EVELSKSSEEL----DSFKDTIESTKESLDEIPQNQRGYAQEILATLEDTLk 416
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425 210 NVEVDAAptvDLNRVLNETRCQYEALVETNR---REVEEWFTTQSEELNKQVVSS-SEQLQSCQAEIIELRRTVNALEIE 285
Cdd:COG5185 417 AADRQIE---ELQRQIEQATSSNEEVSKLLNeliSELNKVMREADEESQSRLEEAyDEINRSVRSKKEDLNEELTQIESR 493
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425 286 LQAqhcMRNSLENTLTESEARYS---SQLSQVQCLITNVESQLG---------EIRADLERQNQEYQV---LLDVRARLE 350
Cdd:COG5185 494 VST---LKATLEKLRAKLERQLEgvrSKLDQVAESLKDFMRARGyahilalenLIPASELIQASNAKTdgqAANLRTAVI 570
                       330
                ....*....|..
gi 81905425 351 CEINTYRSLLES 362
Cdd:COG5185 571 DELTQYLSTIES 582
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
66-350 8.14e-05

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 45.06  E-value: 8.14e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425     66 RLASYMEKVRQLERENAELECRIQERNQQQDPLVCPAYQAYfRTIEELQQKILCAKSENARLvvqidnaklasddfrtky 145
Cdd:TIGR02169  703 RLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE-EDLSSLEQEIENVKSELKEL------------------ 763
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    146 qtelsmrqlvEADINSLRRILDELTLCKSDLEAqveSLREELLCLKKNHEEEVNTLRCQLGDRLNvEVDAaptvDLNRVL 225
Cdd:TIGR02169  764 ----------EARIEELEEDLHKLEEALNDLEA---RLSHSRIPEIQAELSKLEEEVSRIEARLR-EIEQ----KLNRLT 825
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    226 NEtRCQYEALVETNRREVEEWfTTQSEELNKQVVSSSEQLQSCQAEIIELRRTVNALEIELQAQHCMRNSLENTLTESEA 305
Cdd:TIGR02169  826 LE-KEYLEKEIQELQEQRIDL-KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER 903
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*
gi 81905425    306 RYSSQLSQVQCLitnvESQLGEIRADLERQNQEYQVLLDVRARLE 350
Cdd:TIGR02169  904 KIEELEAQIEKK----RKRLSELKAKLEALEEELSEIEDPKGEDE 944
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
155-337 8.77e-05

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 44.44  E-value: 8.77e-05
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425 155 VEADINSLRRILDELTLCKSDLEAQVESLREELLCLKKN---HEEEVNTLRCQLGDRLNVE-VDAAPTVDLNRVLNET-- 228
Cdd:COG3883  35 AQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEiaeAEAEIEERREELGERARALyRSGGSVSYLDVLLGSEsf 114
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425 229 -----RCQY-EALVETNRREVEEwFTTQSEELNKQvvssSEQLQSCQAEIIELRRTVNALEIELQAQHCMRNSLENTLTE 302
Cdd:COG3883 115 sdfldRLSAlSKIADADADLLEE-LKADKAELEAK----KAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSA 189
                       170       180       190
                ....*....|....*....|....*....|....*
gi 81905425 303 SEARYSSQLSQVQCLITNVESQLGEIRADLERQNQ 337
Cdd:COG3883 190 EEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAA 224
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
56-361 9.52e-05

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 44.78  E-value: 9.52e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425     56 EKETMQFLNDRLASYMEKVRQLERENAELECRIQ----ERNQQQDPLvcPAYQAYFRTIEELQQKiLCAKSENARLVVQI 131
Cdd:pfam01576    3 QEEEMQAKEEELQKVKERQQKAESELKELEKKHQqlceEKNALQEQL--QAETELCAEAEEMRAR-LAARKQELEEILHE 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    132 DNAKLASDDFRTkyQTELSMRQLVEADINSLRRILDE-------LTLCKSDLEAQVESLREELLCLkKNHEEEVNTLRCQ 204
Cdd:pfam01576   80 LESRLEEEEERS--QQLQNEKKKMQQHIQDLEEQLDEeeaarqkLQLEKVTTEAKIKKLEEDILLL-EDQNSKLSKERKL 156
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    205 LGDRLN-VEVDAAPTVDLNRVLNETRCQYEALV----------ETNRREVEEWfttqSEELNKQVVSSSEQLQSCQAEII 273
Cdd:pfam01576  157 LEERISeFTSNLAEEEEKAKSLSKLKNKHEAMIsdleerlkkeEKGRQELEKA----KRKLEGESTDLQEQIAELQAQIA 232
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    274 ELRRTVNALEIELQAqhcmrnslenTLTESEARySSQLSQVQCLITNVESQLGEIRADLERQNQEYQVLLDVRARLECEI 353
Cdd:pfam01576  233 ELRAQLAKKEEELQA----------ALARLEEE-TAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEEL 301

                   ....*...
gi 81905425    354 NTYRSLLE 361
Cdd:pfam01576  302 EALKTELE 309
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
163-362 4.22e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 42.75  E-value: 4.22e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    163 RRILDELTLCkSDLEAQVESLREELLCLKKNHEE---EVNTLRCQLgDRLNVEVDAAPTVD-LNRVLNETRcQYEALVET 238
Cdd:TIGR02169  156 RKIIDEIAGV-AEFDRKKEKALEELEEVEENIERldlIIDEKRQQL-ERLRREREKAERYQaLLKEKREYE-GYELLKEK 232
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    239 NRREveewftTQSEELNKQVVSSSEQLQSCQAEIIELRRTVNALEIELQAQhcmrNSLENTLTESEARyssqlsQVQCLI 318
Cdd:TIGR02169  233 EALE------RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEEL----NKKIKDLGEEEQL------RVKEKI 296
                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....
gi 81905425    319 TNVESQLGEIRADLERQNQEYQVLLDVRARLECEINTYRSLLES 362
Cdd:TIGR02169  297 GELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEE 340
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
58-347 4.76e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 42.36  E-value: 4.76e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425     58 ETMQFLNDRLASYMEKVRQL-ERENAELECRIQERNQQQDPLVcpayqayfRTIEELQQKILCAKSENARLVVQIDNAKL 136
Cdd:TIGR02169  265 KRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLE--------RSIAEKERELEDAEERLAKLEAEIDKLLA 336
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    137 ASDDFRTKYQTELSMRQLVEADINSLRRILDELTLCKSDLEAQVESLREELLCLKKNHE---EEVNTLRCQLgDRLNVEV 213
Cdd:TIGR02169  337 EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEklkREINELKREL-DRLQEEL 415
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    214 DAAPT--VDLN---RVLNETRCQYEALVETNRREVEEwFTTQSEELNKQVVSSSEQLQSCQAEIIELRRTVNALEIELQA 288
Cdd:TIGR02169  416 QRLSEelADLNaaiAGIEAKINELEEEKEDKALEIKK-QEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAE 494
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 81905425    289 qhcmrnsLENTLTESEARYSSQLSQVQCLITNVESQLGEIrADLERQNQEYQVLLDVRA 347
Cdd:TIGR02169  495 -------AEAQARASEERVRGGRAVEEVLKASIQGVHGTV-AQLGSVGERYATAIEVAA 545
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
252-364 6.17e-04

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 41.67  E-value: 6.17e-04
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425 252 EELNKQVVSSSEQLQSCQAEIIELRRTVNALEIELQAQHCMRNSLENTLTESEARyssqlsqvqclITNVESQLGEIRAD 331
Cdd:COG4942  30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAE-----------LAELEKEIAELRAE 98
                        90       100       110
                ....*....|....*....|....*....|...
gi 81905425 332 LERQNQEYQVLLDVRARLEcEINTYRSLLESED 364
Cdd:COG4942  99 LEAQKEELAELLRALYRLG-RQPPLALLLSPED 130
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
83-385 6.37e-04

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 41.96  E-value: 6.37e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425     83 ELECRIQERNQQQDPLVCPAYQAYFRTIEELQQKILCAKSENARlVVQIDNAKLASDDFRTKY------QTELSMRQLVE 156
Cdd:TIGR00606  397 TLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGR-TIELKKEILEKKQEELKFvikelqQLEGSSDRILE 475
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    157 ADiNSLRRILDELTlcKSDLEAQVESLREELLCLKKNHEEEVNTLRCQlgDRLNVEVDAApTVDLNRVLNETR---CQYE 233
Cdd:TIGR00606  476 LD-QELRKAERELS--KAEKNSLTETLKKEVKSLQNEKADLDRKLRKL--DQEMEQLNHH-TTTRTQMEMLTKdkmDKDE 549
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    234 ALVETNRREVEEWFTTQSEELNKQVVSssEQLQSCQAEIIELRRTVNALEIELQAQHCMRNSLEN---TLTESEARYSSQ 310
Cdd:TIGR00606  550 QIRKIKSRHSDELTSLLGYFPNKKQLE--DWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNeleSKEEQLSSYEDK 627
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81905425    311 LSQVqCLITNVESQLGEIRADLERQNQEyqvlldvRARLECEINTYRSLLESedcnlpcnpcaTTNASGSCCGPC 385
Cdd:TIGR00606  628 LFDV-CGSQDEESDLERLKEEIEKSSKQ-------RAMLAGATAVYSQFITQ-----------LTDENQSCCPVC 683
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
70-342 1.03e-03

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 41.26  E-value: 1.03e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425     70 YMEKVRQLERE----NAELECRIQERNQ--QQDPLVCPAYQAYFRTIEELQQKILCAKSENARL-------VVQIDNAKL 136
Cdd:pfam15921  340 YEDKIEELEKQlvlaNSELTEARTERDQfsQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLwdrdtgnSITIDHLRR 419
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    137 ASDD--------------FRTKYQTEL------------------SMRQLVEADINSLRRILDELTLCKSDLEAQVESLR 184
Cdd:pfam15921  420 ELDDrnmevqrleallkaMKSECQGQMerqmaaiqgkneslekvsSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVS 499
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    185 EELLCLKKNHE--EEVNTLRCQLGDRLNVEVDaaptvDLNRVLNE--------TRCQYEALVETNRREVEEWFTTQSEEL 254
Cdd:pfam15921  500 DLTASLQEKERaiEATNAEITKLRSRVDLKLQ-----ELQHLKNEgdhlrnvqTECEALKLQMAEKDKVIEILRQQIENM 574
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    255 NKQVVSSSEQLQSCQAEIIELRRTVNALEIELQAQHCMRNSLENTLTESEARYSS-QLSQVQclITNVESQ--------- 324
Cdd:pfam15921  575 TQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDlELEKVK--LVNAGSErlravkdik 652
                          330       340
                   ....*....|....*....|....*..
gi 81905425    325 ------LGEI---RADLERQNQEYQVL 342
Cdd:pfam15921  653 qerdqlLNEVktsRNELNSLSEDYEVL 679
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
63-208 2.41e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 39.75  E-value: 2.41e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425  63 LNDRLASYMEKVRQLERENAELECRIQERNQQqdplvcpayqayfrtIEELQQKILCAKSENARLVVQI--------DNA 134
Cdd:COG4942  60 LERRIAALARRIRALEQELAALEAELAELEKE---------------IAELRAELEAQKEELAELLRALyrlgrqppLAL 124
                        90       100       110       120       130       140       150
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 81905425 135 KLASDDFRTKYQTELSMRQLVEAD---INSLRRILDELTlcksDLEAQVESLREELLCLKKNHEEEVNTLRCQLGDR 208
Cdd:COG4942 125 LLSPEDFLDAVRRLQYLKYLAPARreqAEELRADLAELA----ALRAELEAERAELEALLAELEEERAALEALKAER 197
Spc7 smart00787
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ...
159-290 2.62e-03

Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.


Pssm-ID: 197874 [Multi-domain]  Cd Length: 312  Bit Score: 39.62  E-value: 2.62e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    159 INSLRRILDE-LTLCKSDLE------AQVESLREELLCLKKNHEEEVNTLRcqlgdRLNVEVDAAPTVDLNRVLNETRCQ 231
Cdd:smart00787 142 LEGLKEGLDEnLEGLKEDYKllmkelELLNSIKPKLRDRKDALEEELRQLK-----QLEDELEDCDPTELDRAKEKLKKL 216
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81905425    232 YEALVEtNRREVEEwFTTQSEELNKQVVSSSEQLQSCQAEIIELRRTVN------ALEIE-LQAQH 290
Cdd:smart00787 217 LQEIMI-KVKKLEE-LEEELQELESKIEDLTNKKSELNTEIAEAEKKLEqcrgftFKEIEkLKEQL 280
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
223-360 2.71e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 40.00  E-value: 2.71e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425 223 RVLNETrcqYEALVETNRREVEEWFTTQSEELNKQVVSSSEQLQSCQAEIIELRRTVNALEIELQAQhcmrnSLENTLTE 302
Cdd:COG3206 152 AVANAL---AEAYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAK-----LLLQQLSE 223
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 81905425 303 SEARYS---SQLSQVQCLITNVESQLGEIRADLER--QNQEYQVLLDVRARLECEINTYRSLL 360
Cdd:COG3206 224 LESQLAearAELAEAEARLAALRAQLGSGPDALPEllQSPVIQQLRAQLAELEAELAELSARY 286
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
252-364 3.31e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 39.65  E-value: 3.31e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    252 EELNKQVVSSSEQLQSCQAEIIELRRTVNALEIEL-----------QAQHCMRNSLENTLTESEaRYSSQLSQVQCLITN 320
Cdd:TIGR02168  680 EELEEKIEELEEKIAELEKALAELRKELEELEEELeqlrkeleelsRQISALRKDLARLEAEVE-QLEERIAQLSKELTE 758
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 81905425    321 VESQLGEIRADLERQNQEYQVLLDVRARLECEINTYRSLLESED 364
Cdd:TIGR02168  759 LEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
63-363 3.70e-03

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 39.39  E-value: 3.70e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425     63 LNDRLASYMEKVRQLERENAELECRIQERNQQQDPLVcpayqayfRTIEELQQKILCAKSENARLVVQI-DNAKLASDDF 141
Cdd:pfam01576  410 LEGQLQELQARLSESERQRAELAEKLSKLQSELESVS--------SLLNEAEGKNIKLSKDVSSLESQLqDTQELLQEET 481
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    142 RTKYQTELSMRQLvEADINSLRRILDELTLCKSDLEAQVESLREELLCLKKNHEEEVNTLRCQLGDRLNVEVDAAptvDL 221
Cdd:pfam01576  482 RQKLNLSTRLRQL-EDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELE---AL 557
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    222 NRVLNETRCQYEALVETNRREVEEWF-TTQSEELNKQVVSSSEQLQ-------------SCQ---------AEIIELRRT 278
Cdd:pfam01576  558 TQQLEEKAAAYDKLEKTKNRLQQELDdLLVDLDHQRQLVSNLEKKQkkfdqmlaeekaiSARyaeerdraeAEAREKETR 637
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    279 VNALEIELQAQHCMRNSLENTLTESEARYSSQLSQVQCLITNV----------ESQLGEIRADLERQNQEYQVLLDVRAR 348
Cdd:pfam01576  638 ALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVhelerskralEQQVEEMKTQLEELEDELQATEDAKLR 717
                          330
                   ....*....|....*
gi 81905425    349 LECEINTYRSLLESE 363
Cdd:pfam01576  718 LEVNMQALKAQFERD 732
Golgin_A5 pfam09787
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ...
81-262 4.16e-03

Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.


Pssm-ID: 462900 [Multi-domain]  Cd Length: 305  Bit Score: 38.97  E-value: 4.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425    81 NAELECRIQERNQQQDplvcpayqayfrTIEELQQKILCAKSE----NARLVVQIDNAKLASDDFRTKYQTELSMRQLVE 156
Cdd:pfam09787  46 TLELEELRQERDLLRE------------EIQKLRGQIQQLRTElqelEAQQQEEAESSREQLQELEEQLATERSARREAE 113
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425   157 ADINSL----RRILDELTLCKSDLEAQVeslreellclkKNHEEEVNTLRCQLGDRLNVEVDAAPTVDLNRVLNETRCQY 232
Cdd:pfam09787 114 AELERLqeelRYLEEELRRSKATLQSRI-----------KDREAEIEKLRNQLTSKSQSSSSQSELENRLHQLTETLIQK 182
                         170       180       190
                  ....*....|....*....|....*....|
gi 81905425   233 EALVETNRREVEEwFTTQSEELNKQVVSSS 262
Cdd:pfam09787 183 QTMLEALSTEKNS-LVLQLERMEQQIKELQ 211
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
65-338 5.23e-03

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 38.87  E-value: 5.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425   65 DRLASYMEKVRQLERENAELECRIQERNQQQDPLVCPAYQAyfRTIEELQQKILCAKS--ENARLVVQIDNAKLAS---- 138
Cdd:PRK02224 468 ETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAE--DRIERLEERREDLEEliAERRETIEEKRERAEElrer 545
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425  139 -DDFRTKYQTELSMRQLVEADINSLRRILDELTLCKSDLEAQVESLR--EELLCLKKNHEEEVNTLRCQLGDRLNVEVDA 215
Cdd:PRK02224 546 aAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLEriRTLLAAIADAEDEIERLREKREALAELNDER 625
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425  216 APTVDLNRvlnETRCQYEALVETNRREVEEWFTTQSEELNKQVvssSEQLQSCQAEIIELRRTVNALEIELQAQHCMRN- 294
Cdd:PRK02224 626 RERLAEKR---ERKRELEAEFDEARIEEAREDKERAEEYLEQV---EEKLDELREERDDLQAEIGAVENELEELEELREr 699
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 81905425  295 --SLENTLTESEARYSSqlsqvqclITNVESQLGEIRADLERQNQE 338
Cdd:PRK02224 700 reALENRVEALEALYDE--------AEELESMYGDLRAELRQRNVE 737
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
152-335 6.22e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 38.74  E-value: 6.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425  152 RQLVEADINSLRRILDELTLCKSDLEAQVESLREELLCLKKNHEEevntlrcQLGDRLNV---EVDAApTVDLNRVlNET 228
Cdd:COG4913  290 LELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRG-------NGGDRLEQlerEIERL-ERELEER-ERR 360
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425  229 RCQYEALVET---NRREVEEWFTTQSEELNKQVVSSSEQLQSCQAEIIELRRTVNALEIELQAqhcmrnsLENTLTESEA 305
Cdd:COG4913  361 RARLEALLAAlglPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRE-------LEAEIASLER 433
                        170       180       190
                 ....*....|....*....|....*....|
gi 81905425  306 RyssqlsqvqclITNVESQLGEIRADLERQ 335
Cdd:COG4913  434 R-----------KSNIPARLLALRDALAEA 452
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
176-362 6.56e-03

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 38.84  E-value: 6.56e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425 176 LEAQVESLREELlclkKNHEEEVNTLRCQLGDrlnVEVDAAPTVDLNRvLNETRCQYEALvETNRREVEEWFTTQSEELN 255
Cdd:COG3206 180 LEEQLPELRKEL----EEAEAALEEFRQKNGL---VDLSEEAKLLLQQ-LSELESQLAEA-RAELAEAEARLAALRAQLG 250
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425 256 KQVVSSSEQLQScqAEIIELRRTVNALEIELQaqhcmrnslentltESEARYSSQLSQVQCL---ITNVESQL-GEIRAD 331
Cdd:COG3206 251 SGPDALPELLQS--PVIQQLRAQLAELEAELA--------------ELSARYTPNHPDVIALraqIAALRAQLqQEAQRI 314
                       170       180       190
                ....*....|....*....|....*....|.
gi 81905425 332 LERQNQEYQVLLDVRARLECEINTYRSLLES 362
Cdd:COG3206 315 LASLEAELEALQAREASLQAQLAQLEARLAE 345
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
239-350 7.42e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 38.38  E-value: 7.42e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425 239 NRREVEEWFTTQSEELNKQVVSSSEQLQSCQAEIIELRRTVNALEIELQAqhcmRNSLENTLTESEARYSSQLSQVQCLI 318
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEE----AQAEEYELLAELARLEQDIARLEERR 311
                        90       100       110
                ....*....|....*....|....*....|..
gi 81905425 319 TNVESQLGEIRADLERQNQEYQVLLDVRARLE 350
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELE 343
COG2433 COG2433
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
66-198 7.51e-03

Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];


Pssm-ID: 441980 [Multi-domain]  Cd Length: 644  Bit Score: 38.30  E-value: 7.51e-03
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425  66 RLASYMEKVRQLER-------ENAELECRIQERNqqqdplvcpayqayfRTIEELQQKILCAKSEnARLVVQIDNaklas 138
Cdd:COG2433 407 ELTEEEEEIRRLEEqverleaEVEELEAELEEKD---------------ERIERLERELSEARSE-ERREIRKDR----- 465
                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425 139 ddfrtkyqtELSMRqlvEADINSLRRILDEltlcksdLEAQVESLREELLCLKKNHEEEV 198
Cdd:COG2433 466 ---------EISRL---DREIERLERELEE-------ERERIEELKRKLERLKELWKLEH 506
PRK01156 PRK01156
chromosome segregation protein; Provisional
54-357 8.76e-03

chromosome segregation protein; Provisional


Pssm-ID: 100796 [Multi-domain]  Cd Length: 895  Bit Score: 38.34  E-value: 8.76e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425   54 GNEKETMQFLNDRLASYMEKVRQLE------RENAELECRIQERNQQQDPLVC--PAYQAYFRTIEELQQKIlcaksENA 125
Cdd:PRK01156 308 ENKKQILSNIDAEINKYHAIIKKLSvlqkdyNDYIKKKSRYDDLNNQILELEGyeMDYNSYLKSIESLKKKI-----EEY 382
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425  126 RlvvqIDNAKLASDDFRTKYQTELSMRQLVeADINSLRRILDELTLCKSDLEAQVESLREELLCLKKNHEEEVNTLRC-- 203
Cdd:PRK01156 383 S----KNIERMSAFISEILKIQEIDPDAIK-KELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCpv 457
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425  204 ---QLGDRLNVEVDAAPTVDLNRV---LNETRCQYEALVETNRREVEEWFTTQSEELNKqVVSSSEQLQSCQAEIIELRR 277
Cdd:PRK01156 458 cgtTLGEEKSNHIINHYNEKKSRLeekIREIEIEVKDIDEKIVDLKKRKEYLESEEINK-SINEYNKIESARADLEDIKI 536
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81905425  278 TVNaleiELQAQHCMRNSLENT-----LTESEARYSSQL---SQVQCL-ITNVESQLGEIRA---DLERQNQEYQV-LLD 344
Cdd:PRK01156 537 KIN----ELKDKHDKYEEIKNRykslkLEDLDSKRTSWLnalAVISLIdIETNRSRSNEIKKqlnDLESRLQEIEIgFPD 612
                        330       340
                 ....*....|....*....|
gi 81905425  345 VRA-------RLECEINTYR 357
Cdd:PRK01156 613 DKSyidksirEIENEANNLN 632
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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