|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11742 |
PRK11742 |
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional |
19-593 |
0e+00 |
|
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Pssm-ID: 236965 [Multi-domain] Cd Length: 575 Bit Score: 1354.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 19 IVVELNSRFGAETFTVQPTRTGMPVLWVPRERLIEVLTFLRQVPKPYVMLYDLHGVDERLRTHRRGLPSADFSVFYHLMS 98
Cdd:PRK11742 1 VIGELRNRFGPDAFTVQATRTGIPVVWVKREQLLEVLRFLRKLPKPYVMLFDLHGIDERLRTHREGLPAADFTVFYHLIS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 99 LERNSDVMIKVALSERDLNLPTATRIWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDYPARATEFDPYS 178
Cdd:PRK11742 81 IERNRDIMLKVALSENDLHVPTITKIFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLRKDYPARATEFDPFE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 179 LSAAKQDLEQEALRFKPEDWGMKRHGENEDYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQS 258
Cdd:PRK11742 161 LTKAKQDLEMEALRFKPEEWGMKRGTDNEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 259 WHSFIPYTDRIDYLGGVMNNLPYVLSVEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQ 338
Cdd:PRK11742 241 WHSYIPYTDRIDYLGGCMNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYIGTFIQDVGAMTPVFFAFTDRQ 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 339 RAYKVVEAITGFRLHPAWYRIGGVAHDLPRGWDKLVREFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEALEWGT 418
Cdd:PRK11742 321 KIYDVIEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLDEYEKAALRNSILKGRTQGVAAYNAKEALEWGV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 419 TGAGLRATGCDFDLRKARPYSGYENFEFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPEGPYKADHPLTTPPPK 498
Cdd:PRK11742 401 TGAGLRATGIDFDVRKARPYSGYENFDFEVPVGGNGDCYDRVMVKVEEMRQSLRIIEQCLDNMPEGPFKADHPLTTPPPK 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 499 ERTLQHIETLITHFLQVSWGPVMPANEAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVINGSMIADLI 578
Cdd:PRK11742 481 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVIRGSLVSDLI 560
|
570
....*....|....*
gi 81622299 579 AYLGSIDFVMADVDR 593
Cdd:PRK11742 561 VYLGSIDFVMSDVDR 575
|
|
| NuoD |
COG0649 |
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ... |
205-593 |
0e+00 |
|
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain] Cd Length: 390 Bit Score: 664.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 205 ENEDYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIPYTDRIDYLGGVMNNLPYVLS 284
Cdd:COG0649 2 LETEEMVLNMGPQHPSTHGVLRLVLELDGETVVDADPHIGYLHRGFEKLAENRTYTQIIPYTDRLDYLSPMNNELAYVLA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 285 VEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAH 364
Cdd:COG0649 82 VEKLLGIEVPERAQYIRVILAELNRIASHLLWLGTYALDLGAMTPFLYAFREREKILDLFEEVTGARMTHNYFRIGGVRR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 365 DLPRGWDKLVREFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYENF 444
Cdd:COG0649 162 DLPDGFLEKVREFLDYFPKRLDEYEDLLTGNRIFKARTKGVGVLSAEDAIALGVTGPVLRASGVDYDLRKDEPYSGYDEL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 445 EFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPEGPYKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPAN 524
Cdd:COG0649 242 DFDVPVGTEGDCYDRYLVRMEEMRQSLRIIRQCLDKLPEGPVMAKDPKIAPPPKEEMKTSMEALIHHFKLVTEGFKVPAG 321
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81622299 525 EAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVINGSMIADLIAYLGSIDFVMADVDR 593
Cdd:COG0649 322 EVYAAVESPRGELGFYLVSDGGTKPYRVKIRSPSFANLQALPEMLKGHMLADVVAILGSLDIVLGEVDR 390
|
|
| NuoD |
TIGR01962 |
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ... |
208-593 |
0e+00 |
|
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898 Cd Length: 386 Bit Score: 626.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 208 DYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIPYTDRIDYLGGVMNNLPYVLSVEK 287
Cdd:TIGR01962 1 EFMILNLGPQHPSTHGVLRLILELDGEYVVRADPHIGYLHRGTEKLAENRTYQQYIPYTDRLDYLSPFSNELAYCLAVEK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 288 LAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLP 367
Cdd:TIGR01962 81 LLGIEVPRRAQVIRVMLSELNRISSHLLFIGTHALDLGAMTPFLYAFREREKILDLFEAITGARMHSAYFRIGGVALDLP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 368 RGWDKLVREFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYENFEFE 447
Cdd:TIGR01962 161 ENWLEEIREFLEQFPKRLRDYETLLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSGIDWDIRKSEPYEGYDEYDFD 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 448 VPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPEGPYKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANEAF 527
Cdd:TIGR01962 241 VPVGGNGDCYDRYLLRVLEMRESIKIIEQCLEKMPPGPIKADNPKLAPPPKERMLTSMEALIHHFKLVTEGFRVPAGEVY 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81622299 528 QMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVINGSMIADLIAYLGSIDFVMADVDR 593
Cdd:TIGR01962 321 VPIESPKGELGFYIISDGGTKPYRLKIRAPSFAHLQALEAMCVGHYLADLIAILGSIDPVMGEVDR 386
|
|
| Complex1_49kDa |
pfam00346 |
Respiratory-chain NADH dehydrogenase, 49 Kd subunit; |
324-593 |
6.86e-157 |
|
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772 Cd Length: 270 Bit Score: 449.91 E-value: 6.86e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 324 VGAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLPRGWDKLVREFLDWMPKRLDEYETAALKNSILRGRTI 403
Cdd:pfam00346 1 LGAMTPFLYAFREREKILDLFERITGARMTHSYFRPGGVARDLPEGFLEKIREFLDYFPKRLDEYEDLLTRNRIFKDRTK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 404 GVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYENFEFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPE 483
Cdd:pfam00346 81 GVGVLSAEDALALGVTGPMLRASGVPWDLRKDEPYSGYDELDFDVPVGTEGDCYDRYLVRMEEMRQSLRIIRQCLDKLPE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 484 GPYKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANEAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQ 563
Cdd:pfam00346 161 GPVMADDPKIALPPKEEMKTSMEALIHHFKLVTEGFRVPAGEVYVAVEAPKGELGFYLVSDGGTKPYRVKIRAPSFANLQ 240
|
250 260 270
....*....|....*....|....*....|
gi 81622299 564 QIPSVINGSMIADLIAYLGSIDFVMADVDR 593
Cdd:pfam00346 241 ALPEMCKGHMLADVVAIIGSIDIVMGEVDR 270
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11742 |
PRK11742 |
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional |
19-593 |
0e+00 |
|
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
Pssm-ID: 236965 [Multi-domain] Cd Length: 575 Bit Score: 1354.21 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 19 IVVELNSRFGAETFTVQPTRTGMPVLWVPRERLIEVLTFLRQVPKPYVMLYDLHGVDERLRTHRRGLPSADFSVFYHLMS 98
Cdd:PRK11742 1 VIGELRNRFGPDAFTVQATRTGIPVVWVKREQLLEVLRFLRKLPKPYVMLFDLHGIDERLRTHREGLPAADFTVFYHLIS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 99 LERNSDVMIKVALSERDLNLPTATRIWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDYPARATEFDPYS 178
Cdd:PRK11742 81 IERNRDIMLKVALSENDLHVPTITKIFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLRKDYPARATEFDPFE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 179 LSAAKQDLEQEALRFKPEDWGMKRHGENEDYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQS 258
Cdd:PRK11742 161 LTKAKQDLEMEALRFKPEEWGMKRGTDNEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 259 WHSFIPYTDRIDYLGGVMNNLPYVLSVEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQ 338
Cdd:PRK11742 241 WHSYIPYTDRIDYLGGCMNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYIGTFIQDVGAMTPVFFAFTDRQ 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 339 RAYKVVEAITGFRLHPAWYRIGGVAHDLPRGWDKLVREFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEALEWGT 418
Cdd:PRK11742 321 KIYDVIEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLDEYEKAALRNSILKGRTQGVAAYNAKEALEWGV 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 419 TGAGLRATGCDFDLRKARPYSGYENFEFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPEGPYKADHPLTTPPPK 498
Cdd:PRK11742 401 TGAGLRATGIDFDVRKARPYSGYENFDFEVPVGGNGDCYDRVMVKVEEMRQSLRIIEQCLDNMPEGPFKADHPLTTPPPK 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 499 ERTLQHIETLITHFLQVSWGPVMPANEAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVINGSMIADLI 578
Cdd:PRK11742 481 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVIRGSLVSDLI 560
|
570
....*....|....*
gi 81622299 579 AYLGSIDFVMADVDR 593
Cdd:PRK11742 561 VYLGSIDFVMSDVDR 575
|
|
| PRK13292 |
PRK13292 |
NADH-quinone oxidoreductase subunit B/C/D; |
16-593 |
0e+00 |
|
NADH-quinone oxidoreductase subunit B/C/D;
Pssm-ID: 183955 [Multi-domain] Cd Length: 788 Bit Score: 714.63 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 16 DQDIVVELNSRFGaETFTVQPTRTGMPVLWVPRERLIEVLTFLRQ-VPKPYVMLYDLHGVDERLRTHRRGLPsaDFSVFY 94
Cdd:PRK13292 221 DFGLAGELEGAFG-DDVRLDEGATDMLTYRCPPELVPEVLRHLKKrASSPFRRLEDLAAVDESCRRDREKFP--DFTVNY 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 95 HLMSLERNSDVMIKVALSERDLNLPTATRIWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDYPARATEF 174
Cdd:PRK13292 298 HLLSFDTPGHVRIKTELRGRTPELPSATGVFPAANWYEREAFDMFGIRFAGHPNLRRILMPPDWEGHPLRKEHPFRATEM 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 175 DPYSLSAAKqdleqealRFKPEDWGMKRHGENEDYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMA 254
Cdd:PRK13292 378 PPYTRDDAR--------RLQPLPAGDFFDRVDEETLILNLGPQHPGTHGIIRFVLKLDGEEIVDMDSDIGYHHRGAEKIG 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 255 ERQSWHSFIPYTDRIDYLGGVMNNLPYVLSVEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTF 334
Cdd:PRK13292 450 ERQHWNQFIPYTDRIDYLAGVQNNLAYVNSVETLCGIEVPDRAIYIRVMLSELFRIANHLVWLGTFAADVGAMTPVFYTF 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 335 TDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLPRGWDKLVREFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEAL 414
Cdd:PRK13292 530 TDREKIFDIVEMITGGRMHPAWFRIGGVAEDLPEGWKEAVEAFLRWFPGRLKEYEDLLTGNPIFKARLKGVGVITRDEAV 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 415 EWGTTGAGLRATGCDFDLRKARPYSGYENFEFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPEGPYKADHPLTT 494
Cdd:PRK13292 610 EWGISGPNLRACGLAWDLRKKMPYGGYDRFDFEVPTAEGGDCYARYLVRMEEMRQSLRIVRQAAAGMPGGRWISDDYRYV 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 495 PPPKERTLQHIETLITHFLQVSWGPVMPANEAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVINGSMI 574
Cdd:PRK13292 690 LPQKRDTLKDIESLIHHFVNVTRGPAPPKGECYAAIEAPKGENGYFVVSDGLNIAYRMRIRTPSFPHIQALPLLSRGWLV 769
|
570
....*....|....*....
gi 81622299 575 ADLIAYLGSIDFVMADVDR 593
Cdd:PRK13292 770 ADFLAIIGSIDFVLADLDR 788
|
|
| NuoD |
COG0649 |
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ... |
205-593 |
0e+00 |
|
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440414 [Multi-domain] Cd Length: 390 Bit Score: 664.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 205 ENEDYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIPYTDRIDYLGGVMNNLPYVLS 284
Cdd:COG0649 2 LETEEMVLNMGPQHPSTHGVLRLVLELDGETVVDADPHIGYLHRGFEKLAENRTYTQIIPYTDRLDYLSPMNNELAYVLA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 285 VEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAH 364
Cdd:COG0649 82 VEKLLGIEVPERAQYIRVILAELNRIASHLLWLGTYALDLGAMTPFLYAFREREKILDLFEEVTGARMTHNYFRIGGVRR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 365 DLPRGWDKLVREFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYENF 444
Cdd:COG0649 162 DLPDGFLEKVREFLDYFPKRLDEYEDLLTGNRIFKARTKGVGVLSAEDAIALGVTGPVLRASGVDYDLRKDEPYSGYDEL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 445 EFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPEGPYKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPAN 524
Cdd:COG0649 242 DFDVPVGTEGDCYDRYLVRMEEMRQSLRIIRQCLDKLPEGPVMAKDPKIAPPPKEEMKTSMEALIHHFKLVTEGFKVPAG 321
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81622299 525 EAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVINGSMIADLIAYLGSIDFVMADVDR 593
Cdd:COG0649 322 EVYAAVESPRGELGFYLVSDGGTKPYRVKIRSPSFANLQALPEMLKGHMLADVVAILGSLDIVLGEVDR 390
|
|
| NuoD |
TIGR01962 |
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ... |
208-593 |
0e+00 |
|
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]
Pssm-ID: 273898 Cd Length: 386 Bit Score: 626.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 208 DYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIPYTDRIDYLGGVMNNLPYVLSVEK 287
Cdd:TIGR01962 1 EFMILNLGPQHPSTHGVLRLILELDGEYVVRADPHIGYLHRGTEKLAENRTYQQYIPYTDRLDYLSPFSNELAYCLAVEK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 288 LAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLP 367
Cdd:TIGR01962 81 LLGIEVPRRAQVIRVMLSELNRISSHLLFIGTHALDLGAMTPFLYAFREREKILDLFEAITGARMHSAYFRIGGVALDLP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 368 RGWDKLVREFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYENFEFE 447
Cdd:TIGR01962 161 ENWLEEIREFLEQFPKRLRDYETLLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSGIDWDIRKSEPYEGYDEYDFD 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 448 VPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPEGPYKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANEAF 527
Cdd:TIGR01962 241 VPVGGNGDCYDRYLLRVLEMRESIKIIEQCLEKMPPGPIKADNPKLAPPPKERMLTSMEALIHHFKLVTEGFRVPAGEVY 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81622299 528 QMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVINGSMIADLIAYLGSIDFVMADVDR 593
Cdd:TIGR01962 321 VPIESPKGELGFYIISDGGTKPYRLKIRAPSFAHLQALEAMCVGHYLADLIAILGSIDPVMGEVDR 386
|
|
| PRK06075 |
PRK06075 |
NADH-quinone oxidoreductase subunit D; |
208-593 |
1.53e-167 |
|
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 180385 [Multi-domain] Cd Length: 392 Bit Score: 481.96 E-value: 1.53e-167
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 208 DYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIPYTDRIDYLGGVMNNLPYVLSVEK 287
Cdd:PRK06075 5 RNYTLNFGPQHPAAHGVLRLILELDGEVVVRADPHIGYLHRGTEKLAEYRTYLQAIPYFDRLDYVSPMNNEHAYCLAVEK 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 288 LAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLP 367
Cdd:PRK06075 85 LLGIEVPERAQYIRVLFLELNRILSHLLWLGTHALDLGAMTVFLWGFREREKLLDLYEAVTGARMHHAYIRPGGVRRDLP 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 368 RGWDKLVREFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYENFEFE 447
Cdd:PRK06075 165 DGLLEDIRDFLDYFPKRLDDYETLLTDNRIWKQRLVGVGVVSKERALALGFTGPMLRASGVAWDLRKSQPYEVYDELDFD 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 448 VPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNM--PEGPYKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANE 525
Cdd:PRK06075 245 VPVGKNGDCYDRYLVRVEEMRQSLRIIEQCLDRLrpPPGPVMVDDPKIAPPARLEMKTSMEALIHHFKLVTEGFRVPAGE 324
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81622299 526 AFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVINGSMIADLIAYLGSIDFVMADVDR 593
Cdd:PRK06075 325 VYAAVESPKGEFGVYLVSDGGNKPYRVKIRAPSFAHLQALDEMCRGHMLADVVAIIGSLDIVFGEVDR 392
|
|
| Complex1_49kDa |
pfam00346 |
Respiratory-chain NADH dehydrogenase, 49 Kd subunit; |
324-593 |
6.86e-157 |
|
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
Pssm-ID: 459772 Cd Length: 270 Bit Score: 449.91 E-value: 6.86e-157
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 324 VGAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLPRGWDKLVREFLDWMPKRLDEYETAALKNSILRGRTI 403
Cdd:pfam00346 1 LGAMTPFLYAFREREKILDLFERITGARMTHSYFRPGGVARDLPEGFLEKIREFLDYFPKRLDEYEDLLTRNRIFKDRTK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 404 GVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYENFEFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPE 483
Cdd:pfam00346 81 GVGVLSAEDALALGVTGPMLRASGVPWDLRKDEPYSGYDELDFDVPVGTEGDCYDRYLVRMEEMRQSLRIIRQCLDKLPE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 484 GPYKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANEAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQ 563
Cdd:pfam00346 161 GPVMADDPKIALPPKEEMKTSMEALIHHFKLVTEGFRVPAGEVYVAVEAPKGELGFYLVSDGGTKPYRVKIRAPSFANLQ 240
|
250 260 270
....*....|....*....|....*....|
gi 81622299 564 QIPSVINGSMIADLIAYLGSIDFVMADVDR 593
Cdd:pfam00346 241 ALPEMCKGHMLADVVAIIGSIDIVMGEVDR 270
|
|
| PRK12322 |
PRK12322 |
NADH-quinone oxidoreductase subunit D; |
210-593 |
1.01e-143 |
|
NADH-quinone oxidoreductase subunit D;
Pssm-ID: 183437 [Multi-domain] Cd Length: 366 Bit Score: 420.26 E-value: 1.01e-143
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 210 MFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIPYTDRIDYLGGVMNNLPYVLSVEKLA 289
Cdd:PRK12322 7 MLLNVGPQHPSTHGVFRLVLKIDGEIIVEATPVIGYLHRGTEKLAESLQYTQIIPYTDRMDYLSAMTNNYVYCHAVETMM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 290 GIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLPRG 369
Cdd:PRK12322 87 GLEVPERAEYLRVIAMELGRIASHLVWWGTYLLDIGAVSPFLYAFREREMIINLLNELCGARLTFNYMRIGGVKWDAPDG 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 370 WDKLVREFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYENFEFEVP 449
Cdd:PRK12322 167 WIEKVKEFVPYMREQLAGYHDLVTGNEIFLNRVKGVGIYSAEEAISYSLSGVNLRCTGVNWDLRKDEPYSIYDRFDFDIP 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 450 LAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPE-GPYKADHPLTTPPPKertlqhietlithflqvswgpvmpaNEAFQ 528
Cdd:PRK12322 247 VGSVGDCWDRYVCRMQEIEQSLKIIEQAVEQFPKeGPVLAKVPKIIKAPK-------------------------GEAYV 301
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81622299 529 MIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVINGSMIADLIAYLGSIDFVMADVDR 593
Cdd:PRK12322 302 RIESPRGEIGCYIASDGKKKPYRLKFRRPSFYNLQILPKLLKGENIANLIAILGSIDIVLGEVDG 366
|
|
| PRK07415 |
PRK07415 |
NAD(P)H-quinone oxidoreductase subunit H; Validated |
210-593 |
2.91e-112 |
|
NAD(P)H-quinone oxidoreductase subunit H; Validated
Pssm-ID: 180969 [Multi-domain] Cd Length: 394 Bit Score: 340.95 E-value: 2.91e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 210 MFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIPYTDRIDYLGGVMNNLPYVLSVEKLA 289
Cdd:PRK07415 11 MVLNFGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMYVPYVSRWDYAAGMFNEAITVNAPEKLA 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 290 GIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQRAYKVVEAITGFRL-HPAWYRIGGVAHDLPR 368
Cdd:PRK07415 91 NIPVPKRASYIRVIMLELNRIANHLLWLGPFLADVGAQTPFFYIFREREMIYDLWEAATGQRLiNNNYFRIGGVAADLPY 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 369 GWDKLVREFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYENFEFEV 448
Cdd:PRK07415 171 GWLEKCLDFCDYFGPKIDEYEKLITNNPIFRRRIEGLGTISREEAINWGLSGPMLRASGVKWDLRKVDHYECYDDFDWDV 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 449 PLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPEGPY---KADHPLTTPPPKERTLQHietlitHFLQVSWGPV--MPA 523
Cdd:PRK07415 251 AWETEGDCLARYRVRIEEMRESVKIIRQACKGIPGGPYenlEAKRMAEGKKSEWNGFDY------QYVAKKVAPTfkIPN 324
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 524 NEAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVINGSMIADLIAYLGSIDFVMADVDR 593
Cdd:PRK07415 325 GELYVRLESGKGELGIFIQGNNDVTPWRWKIRAADFNNLQILPHLLKGAKVADIMAILGSIDVIMGSVDR 394
|
|
| ndhH |
CHL00017 |
NADH dehydrogenase subunit 7 |
200-593 |
2.94e-99 |
|
NADH dehydrogenase subunit 7
Pssm-ID: 176960 Cd Length: 393 Bit Score: 307.39 E-value: 2.94e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 200 MKRHGENEDYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIPYTDRIDYLGGVMNNL 279
Cdd:CHL00017 1 MTVPATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 280 PYVLSVEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRI 359
Cdd:CHL00017 81 ITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 360 GGVAHDLPRGW-DKLVrEFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPY 438
Cdd:CHL00017 161 GGVAADLPYGWiDKCL-DFCDYFLTGVAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHY 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 439 SGYENFEFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPEGPYKADHPLTTPPPKERTLQHIEtliTHFLQVSWG 518
Cdd:CHL00017 240 ECYDEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEARRFDREKDSEWNDFE---YRFISKKPS 316
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 81622299 519 PV--MPANEAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVINGSMIADLIAYLGSIDFVMADVDR 593
Cdd:CHL00017 317 PTfeLSKQELYVRVEAPKGELGIFLIGDDSVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
|
|
| NuoC |
COG0852 |
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ... |
14-177 |
4.65e-61 |
|
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440613 [Multi-domain] Cd Length: 164 Bit Score: 199.67 E-value: 4.65e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 14 ADDQDIVVELNSRFGAETFTVQpTRTGMPVLWVPRERLIEVLTFLRQVpKPYVMLYDLHGVDERLRTHRrglpsadFSVF 93
Cdd:COG0852 2 SELEELLEALEEKFGDAVLEVE-EARGELTLTVPPEDLVDVARFLRDD-LGFDHLSDLTGVDYPERGDR-------FEVV 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 94 YHLMSLERNSDVMIKVALSERDLNLPTATRIWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDYPARATE 173
Cdd:COG0852 73 YHLLSLTHNRRLRLKVFVPRDDPVVPSVTDVWPGANWHEREAYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLEGYV 152
|
....
gi 81622299 174 FDPY 177
Cdd:COG0852 153 EVRY 156
|
|
| Complex1_30kDa |
pfam00329 |
Respiratory-chain NADH dehydrogenase, 30 Kd subunit; |
44-173 |
1.08e-53 |
|
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
Pssm-ID: 459763 [Multi-domain] Cd Length: 121 Bit Score: 178.44 E-value: 1.08e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 44 LWVPRERLIEVLTFLRQVPKPYVMLYDLHGVDERlrthrrglPSADFSVFYHLMSLERNSDVMIKVALsERDLNLPTATR 123
Cdd:pfam00329 1 VTVDPEDLLEVARFLRDDELGFDHLSDLTGVDYP--------EEGRFEVVYHLLSITHNVRVRVKVPL-EDDPVVPSVTD 71
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 81622299 124 IWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDYPARATE 173
Cdd:pfam00329 72 IWPGANWYEREVYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLTGYV 121
|
|
| NuoC_fam |
TIGR01961 |
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ... |
42-171 |
2.91e-51 |
|
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]
Pssm-ID: 273897 [Multi-domain] Cd Length: 121 Bit Score: 172.03 E-value: 2.91e-51
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 42 PVLWVPRERLIEVLTFLRQVPKPYVMLYDLHGVDeRLRTHRrglpsadFSVFYHLMSLERNSDVMIKVALSERDlNLPTA 121
Cdd:TIGR01961 1 LVVWIKKEQLLEVLTFLKDPALGFELLTDVSGVD-YPKEKR-------FEVVYHLLSIKKNRRIRLKVRLSEDD-PVPSL 71
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 81622299 122 TRIWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDYPARA 171
Cdd:TIGR01961 72 TSVFPTANWYERETYDMYGIVFDGHPDLRRILMPDDFEGHPLRKDYPLTG 121
|
|
| PRK06074 |
PRK06074 |
NADH dehydrogenase subunit C; Provisional |
46-168 |
8.43e-39 |
|
NADH dehydrogenase subunit C; Provisional
Pssm-ID: 235691 [Multi-domain] Cd Length: 189 Bit Score: 140.81 E-value: 8.43e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 46 VPRERLIEVLTFLRQVPKP-YVMLYDLHGVDERLRTHRrglpsadFSVFYHLMSLERNSDVMIKVALSErDLNLPTATRI 124
Cdd:PRK06074 33 VPAEKILEVLTFLRDDPELrFEQLIDLTGVDYPERGKR-------FEVVYHLLSYKHNVRLRVKVRAPE-DPVVPSVVDI 104
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 81622299 125 WPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDYP 168
Cdd:PRK06074 105 WPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDFP 148
|
|
| HycE1 |
COG3262 |
Ni,Fe-hydrogenase III component G [Energy production and conversion]; |
22-499 |
6.96e-33 |
|
Ni,Fe-hydrogenase III component G [Energy production and conversion];
Pssm-ID: 442493 [Multi-domain] Cd Length: 523 Bit Score: 132.38 E-value: 6.96e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 22 ELNSRFGAETFTVQPTRTGMPVLWVPRERLIEVLTFLRQVPKPYVMLydLHGVDERLRTHRrglpsadFSVFYHLMSLER 101
Cdd:COG3262 6 ELRARFGGSILERRWVRPNEVWVEVDREDLPELAEFLAEGGGGRLAA--LWGNDERELGGG-------FAVYYVFALEGE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 102 NSDVMIKVALSERDLNLPTATRIWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQG--HPLRKDyparateFDPYSL 179
Cdd:COG3262 77 GALVTLKVSVPKDDPVFPSITDLFPAASWYEREIRDLFGIVPEGHPDPRRLVLHDDWPEgiYPLRKD-------FKGGPR 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 180 SAAKQDLEQEalrfkpedwgmkRHGENEDYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSW 259
Cdd:COG3262 150 PAPAPAEEYF------------RPVEGEGIEVVVVGPVHAGIIEPGHFFFSVGGEIVIRLEELLYYVHKGEEKLEEGEEG 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 260 HSFIPYTDRIDYLGGVMNNLPYVLSVEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQR 339
Cdd:COG3262 218 RAGLVLAEAAGGDSGAAAAAAAAAAAEAAAAAAIPPRAALLRLLRLLLERLELHLGLLGLGGLDAGGAGAAGAAALLRRR 297
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 340 AYKVVEAITGFRLHPAwYRIGGVAHDLPRGW--DKLVREFLDWMPKRLDEYETAALKNS-ILRGRTIGVAQYNTKEALew 416
Cdd:COG3262 298 LERLLEALLLRRGRRG-GGGGGGGGRDDDDLlaDLILELLLDLEEEEEELEELADLLSRlIDRLDTTGGLALKAAAAG-- 374
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 417 GTTGAGLRATGCDFDLRKARPYSGYENFEFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPEGPYKADHPLTTPP 496
Cdd:COG3262 375 GVGGAAGRASGGRGDRRRRAPYAAYDDVDLRVVVLTVGDVDVRRARVREELEEISRLIIILLDLLLLGPGGLLVGGEPAP 454
|
...
gi 81622299 497 PKE 499
Cdd:COG3262 455 AEG 457
|
|
| PRK07785 |
PRK07785 |
NADH dehydrogenase subunit C; Provisional |
44-168 |
1.28e-30 |
|
NADH dehydrogenase subunit C; Provisional
Pssm-ID: 181115 [Multi-domain] Cd Length: 235 Bit Score: 119.71 E-value: 1.28e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 44 LWVPRERLIEVLTFLRQVPK-PYVMLYDLHGVDERLRTHRRglpsadFSVFYHLMSLERNSDVMIKVALSERDLNLPTAT 122
Cdd:PRK07785 93 LHVRREHLVEVAQTLRDDPAlRFELCLGVSGVHYPHDTGRE------LHAVYHLTSITHNRRIRLEVAVPDADPHIPSLV 166
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 81622299 123 RIWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDYP 168
Cdd:PRK07785 167 SVYPTNDWHERETYDFFGIVFDGHPALTRIEMPDDWVGHPQRKDYP 212
|
|
| PRK12494 |
PRK12494 |
NAD(P)H-quinone oxidoreductase subunit J; |
40-167 |
3.51e-26 |
|
NAD(P)H-quinone oxidoreductase subunit J;
Pssm-ID: 183557 [Multi-domain] Cd Length: 172 Bit Score: 105.04 E-value: 3.51e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 40 GMPVLWVPRERLIEVLTFLRQVPKPYVML---YDLhGVDERLRThrrglpsadfsvFYHLMSLERNSD----VMIKVALS 112
Cdd:PRK12494 39 GVEIIKVEPDFLLPIATALYAYGFNYLQCqggYDE-GPGKELVS------------FYHLIKVSDNADkpreVRLKVFLP 105
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 81622299 113 ERDLNLPTATRIWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDY 167
Cdd:PRK12494 106 RDDPRVPSVYWIWKGADWQERETYDMYGINFEGHPNLKRILMPEDWVGWPLRKDY 160
|
|
| PRK08491 |
PRK08491 |
NADH-quinone oxidoreductase subunit C; |
43-174 |
3.90e-25 |
|
NADH-quinone oxidoreductase subunit C;
Pssm-ID: 181449 Cd Length: 263 Bit Score: 104.75 E-value: 3.90e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 43 VLWVPRERLIEVLTFLRQVPkpYVMLYDLHGVDerLRTHRRGlpsadFSVFYHLMSLERNSDVMIKVALSERDlNLPTAT 122
Cdd:PRK08491 60 VIWIKKDDNFKVLKILKHLG--YECLSEMSAID--FLAKKGG-----FEVFYQLLSMSKRKRVRVKCFLKEKE-ALQSVS 129
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 81622299 123 RIWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDYPARATEF 174
Cdd:PRK08491 130 FLFKSANWSEREMYDMFGIVINNHPYLKRILMPDDWVGHPLLKSYPLKGDEF 181
|
|
| PRK07735 |
PRK07735 |
NADH-quinone oxidoreductase subunit C; |
42-167 |
5.20e-25 |
|
NADH-quinone oxidoreductase subunit C;
Pssm-ID: 236081 [Multi-domain] Cd Length: 430 Bit Score: 107.76 E-value: 5.20e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 42 PVLWVPRERLIEVLTFLR---QVPKPYvmLYDLHGVDerLRTHrrglpsadFSVFYHLMSLERNSDVMIKVALSERDLNL 118
Cdd:PRK07735 307 PTLVVEPEKYYEVAELLRfheQLAFDY--LSELHGTD--FVTH--------MEVYVHLYSYGKRQSVAVKVKLDREAPQV 374
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 81622299 119 PTATRIWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDY 167
Cdd:PRK07735 375 ESVTPLWKGANWPEREAYDLLGIVFKGHPNLSRILLPDDWVGHPLRKDY 423
|
|
| ndhJ |
CHL00012 |
NADH dehydrogenase subunit J |
94-167 |
8.24e-21 |
|
NADH dehydrogenase subunit J
Pssm-ID: 176955 [Multi-domain] Cd Length: 158 Bit Score: 89.37 E-value: 8.24e-21
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81622299 94 YHLMSLERNSD----VMIKVALSERDLNLPTATRIWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDY 167
Cdd:CHL00012 69 YHLTRIQYGVDqpeeVCIKVFVPRKNPRIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDY 146
|
|
|