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Conserved domains on  [gi|81622299|sp|Q9I0J9|]
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RecName: Full=NADH-quinone oxidoreductase subunit C/D; AltName: Full=NADH dehydrogenase I subunit C/D; AltName: Full=NDH-1 subunit C/D

Protein Classification

NADH-quinone oxidoreductase subunit C/D( domain architecture ID 11485479)

bifunctional NADH-quinone oxidoreductase subunit C/D (NuoC/NuoD) is part of the connecting domain of complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK11742 PRK11742
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
19-593 0e+00

bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional


:

Pssm-ID: 236965 [Multi-domain]  Cd Length: 575  Bit Score: 1354.21  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   19 IVVELNSRFGAETFTVQPTRTGMPVLWVPRERLIEVLTFLRQVPKPYVMLYDLHGVDERLRTHRRGLPSADFSVFYHLMS 98
Cdd:PRK11742   1 VIGELRNRFGPDAFTVQATRTGIPVVWVKREQLLEVLRFLRKLPKPYVMLFDLHGIDERLRTHREGLPAADFTVFYHLIS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   99 LERNSDVMIKVALSERDLNLPTATRIWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDYPARATEFDPYS 178
Cdd:PRK11742  81 IERNRDIMLKVALSENDLHVPTITKIFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLRKDYPARATEFDPFE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  179 LSAAKQDLEQEALRFKPEDWGMKRHGENEDYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQS 258
Cdd:PRK11742 161 LTKAKQDLEMEALRFKPEEWGMKRGTDNEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQS 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  259 WHSFIPYTDRIDYLGGVMNNLPYVLSVEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQ 338
Cdd:PRK11742 241 WHSYIPYTDRIDYLGGCMNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYIGTFIQDVGAMTPVFFAFTDRQ 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  339 RAYKVVEAITGFRLHPAWYRIGGVAHDLPRGWDKLVREFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEALEWGT 418
Cdd:PRK11742 321 KIYDVIEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLDEYEKAALRNSILKGRTQGVAAYNAKEALEWGV 400
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  419 TGAGLRATGCDFDLRKARPYSGYENFEFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPEGPYKADHPLTTPPPK 498
Cdd:PRK11742 401 TGAGLRATGIDFDVRKARPYSGYENFDFEVPVGGNGDCYDRVMVKVEEMRQSLRIIEQCLDNMPEGPFKADHPLTTPPPK 480
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  499 ERTLQHIETLITHFLQVSWGPVMPANEAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVINGSMIADLI 578
Cdd:PRK11742 481 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVIRGSLVSDLI 560
                        570
                 ....*....|....*
gi 81622299  579 AYLGSIDFVMADVDR 593
Cdd:PRK11742 561 VYLGSIDFVMSDVDR 575
 
Name Accession Description Interval E-value
PRK11742 PRK11742
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
19-593 0e+00

bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional


Pssm-ID: 236965 [Multi-domain]  Cd Length: 575  Bit Score: 1354.21  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   19 IVVELNSRFGAETFTVQPTRTGMPVLWVPRERLIEVLTFLRQVPKPYVMLYDLHGVDERLRTHRRGLPSADFSVFYHLMS 98
Cdd:PRK11742   1 VIGELRNRFGPDAFTVQATRTGIPVVWVKREQLLEVLRFLRKLPKPYVMLFDLHGIDERLRTHREGLPAADFTVFYHLIS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   99 LERNSDVMIKVALSERDLNLPTATRIWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDYPARATEFDPYS 178
Cdd:PRK11742  81 IERNRDIMLKVALSENDLHVPTITKIFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLRKDYPARATEFDPFE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  179 LSAAKQDLEQEALRFKPEDWGMKRHGENEDYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQS 258
Cdd:PRK11742 161 LTKAKQDLEMEALRFKPEEWGMKRGTDNEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQS 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  259 WHSFIPYTDRIDYLGGVMNNLPYVLSVEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQ 338
Cdd:PRK11742 241 WHSYIPYTDRIDYLGGCMNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYIGTFIQDVGAMTPVFFAFTDRQ 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  339 RAYKVVEAITGFRLHPAWYRIGGVAHDLPRGWDKLVREFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEALEWGT 418
Cdd:PRK11742 321 KIYDVIEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLDEYEKAALRNSILKGRTQGVAAYNAKEALEWGV 400
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  419 TGAGLRATGCDFDLRKARPYSGYENFEFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPEGPYKADHPLTTPPPK 498
Cdd:PRK11742 401 TGAGLRATGIDFDVRKARPYSGYENFDFEVPVGGNGDCYDRVMVKVEEMRQSLRIIEQCLDNMPEGPFKADHPLTTPPPK 480
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  499 ERTLQHIETLITHFLQVSWGPVMPANEAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVINGSMIADLI 578
Cdd:PRK11742 481 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVIRGSLVSDLI 560
                        570
                 ....*....|....*
gi 81622299  579 AYLGSIDFVMADVDR 593
Cdd:PRK11742 561 VYLGSIDFVMSDVDR 575
NuoD COG0649
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
205-593 0e+00

NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440414 [Multi-domain]  Cd Length: 390  Bit Score: 664.08  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 205 ENEDYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIPYTDRIDYLGGVMNNLPYVLS 284
Cdd:COG0649   2 LETEEMVLNMGPQHPSTHGVLRLVLELDGETVVDADPHIGYLHRGFEKLAENRTYTQIIPYTDRLDYLSPMNNELAYVLA 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 285 VEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAH 364
Cdd:COG0649  82 VEKLLGIEVPERAQYIRVILAELNRIASHLLWLGTYALDLGAMTPFLYAFREREKILDLFEEVTGARMTHNYFRIGGVRR 161
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 365 DLPRGWDKLVREFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYENF 444
Cdd:COG0649 162 DLPDGFLEKVREFLDYFPKRLDEYEDLLTGNRIFKARTKGVGVLSAEDAIALGVTGPVLRASGVDYDLRKDEPYSGYDEL 241
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 445 EFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPEGPYKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPAN 524
Cdd:COG0649 242 DFDVPVGTEGDCYDRYLVRMEEMRQSLRIIRQCLDKLPEGPVMAKDPKIAPPPKEEMKTSMEALIHHFKLVTEGFKVPAG 321
                       330       340       350       360       370       380
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81622299 525 EAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVINGSMIADLIAYLGSIDFVMADVDR 593
Cdd:COG0649 322 EVYAAVESPRGELGFYLVSDGGTKPYRVKIRSPSFANLQALPEMLKGHMLADVVAILGSLDIVLGEVDR 390
NuoD TIGR01962
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
208-593 0e+00

NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]


Pssm-ID: 273898  Cd Length: 386  Bit Score: 626.68  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   208 DYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIPYTDRIDYLGGVMNNLPYVLSVEK 287
Cdd:TIGR01962   1 EFMILNLGPQHPSTHGVLRLILELDGEYVVRADPHIGYLHRGTEKLAENRTYQQYIPYTDRLDYLSPFSNELAYCLAVEK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   288 LAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLP 367
Cdd:TIGR01962  81 LLGIEVPRRAQVIRVMLSELNRISSHLLFIGTHALDLGAMTPFLYAFREREKILDLFEAITGARMHSAYFRIGGVALDLP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   368 RGWDKLVREFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYENFEFE 447
Cdd:TIGR01962 161 ENWLEEIREFLEQFPKRLRDYETLLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSGIDWDIRKSEPYEGYDEYDFD 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   448 VPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPEGPYKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANEAF 527
Cdd:TIGR01962 241 VPVGGNGDCYDRYLLRVLEMRESIKIIEQCLEKMPPGPIKADNPKLAPPPKERMLTSMEALIHHFKLVTEGFRVPAGEVY 320
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81622299   528 QMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVINGSMIADLIAYLGSIDFVMADVDR 593
Cdd:TIGR01962 321 VPIESPKGELGFYIISDGGTKPYRLKIRAPSFAHLQALEAMCVGHYLADLIAILGSIDPVMGEVDR 386
Complex1_49kDa pfam00346
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
324-593 6.86e-157

Respiratory-chain NADH dehydrogenase, 49 Kd subunit;


Pssm-ID: 459772  Cd Length: 270  Bit Score: 449.91  E-value: 6.86e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   324 VGAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLPRGWDKLVREFLDWMPKRLDEYETAALKNSILRGRTI 403
Cdd:pfam00346   1 LGAMTPFLYAFREREKILDLFERITGARMTHSYFRPGGVARDLPEGFLEKIREFLDYFPKRLDEYEDLLTRNRIFKDRTK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   404 GVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYENFEFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPE 483
Cdd:pfam00346  81 GVGVLSAEDALALGVTGPMLRASGVPWDLRKDEPYSGYDELDFDVPVGTEGDCYDRYLVRMEEMRQSLRIIRQCLDKLPE 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   484 GPYKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANEAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQ 563
Cdd:pfam00346 161 GPVMADDPKIALPPKEEMKTSMEALIHHFKLVTEGFRVPAGEVYVAVEAPKGELGFYLVSDGGTKPYRVKIRAPSFANLQ 240
                         250       260       270
                  ....*....|....*....|....*....|
gi 81622299   564 QIPSVINGSMIADLIAYLGSIDFVMADVDR 593
Cdd:pfam00346 241 ALPEMCKGHMLADVVAIIGSIDIVMGEVDR 270
 
Name Accession Description Interval E-value
PRK11742 PRK11742
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
19-593 0e+00

bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional


Pssm-ID: 236965 [Multi-domain]  Cd Length: 575  Bit Score: 1354.21  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   19 IVVELNSRFGAETFTVQPTRTGMPVLWVPRERLIEVLTFLRQVPKPYVMLYDLHGVDERLRTHRRGLPSADFSVFYHLMS 98
Cdd:PRK11742   1 VIGELRNRFGPDAFTVQATRTGIPVVWVKREQLLEVLRFLRKLPKPYVMLFDLHGIDERLRTHREGLPAADFTVFYHLIS 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   99 LERNSDVMIKVALSERDLNLPTATRIWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDYPARATEFDPYS 178
Cdd:PRK11742  81 IERNRDIMLKVALSENDLHVPTITKIFPNANWYERETWDMFGITFDGHPHLRRILMPPTWEGHPLRKDYPARATEFDPFE 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  179 LSAAKQDLEQEALRFKPEDWGMKRHGENEDYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQS 258
Cdd:PRK11742 161 LTKAKQDLEMEALRFKPEEWGMKRGTDNEDFMFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQS 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  259 WHSFIPYTDRIDYLGGVMNNLPYVLSVEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQ 338
Cdd:PRK11742 241 WHSYIPYTDRIDYLGGCMNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYIGTFIQDVGAMTPVFFAFTDRQ 320
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  339 RAYKVVEAITGFRLHPAWYRIGGVAHDLPRGWDKLVREFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEALEWGT 418
Cdd:PRK11742 321 KIYDVIEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLDEYEKAALRNSILKGRTQGVAAYNAKEALEWGV 400
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  419 TGAGLRATGCDFDLRKARPYSGYENFEFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPEGPYKADHPLTTPPPK 498
Cdd:PRK11742 401 TGAGLRATGIDFDVRKARPYSGYENFDFEVPVGGNGDCYDRVMVKVEEMRQSLRIIEQCLDNMPEGPFKADHPLTTPPPK 480
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  499 ERTLQHIETLITHFLQVSWGPVMPANEAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVINGSMIADLI 578
Cdd:PRK11742 481 ERTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVIRGSLVSDLI 560
                        570
                 ....*....|....*
gi 81622299  579 AYLGSIDFVMADVDR 593
Cdd:PRK11742 561 VYLGSIDFVMSDVDR 575
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
16-593 0e+00

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 714.63  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   16 DQDIVVELNSRFGaETFTVQPTRTGMPVLWVPRERLIEVLTFLRQ-VPKPYVMLYDLHGVDERLRTHRRGLPsaDFSVFY 94
Cdd:PRK13292 221 DFGLAGELEGAFG-DDVRLDEGATDMLTYRCPPELVPEVLRHLKKrASSPFRRLEDLAAVDESCRRDREKFP--DFTVNY 297
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   95 HLMSLERNSDVMIKVALSERDLNLPTATRIWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDYPARATEF 174
Cdd:PRK13292 298 HLLSFDTPGHVRIKTELRGRTPELPSATGVFPAANWYEREAFDMFGIRFAGHPNLRRILMPPDWEGHPLRKEHPFRATEM 377
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  175 DPYSLSAAKqdleqealRFKPEDWGMKRHGENEDYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMA 254
Cdd:PRK13292 378 PPYTRDDAR--------RLQPLPAGDFFDRVDEETLILNLGPQHPGTHGIIRFVLKLDGEEIVDMDSDIGYHHRGAEKIG 449
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  255 ERQSWHSFIPYTDRIDYLGGVMNNLPYVLSVEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTF 334
Cdd:PRK13292 450 ERQHWNQFIPYTDRIDYLAGVQNNLAYVNSVETLCGIEVPDRAIYIRVMLSELFRIANHLVWLGTFAADVGAMTPVFYTF 529
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  335 TDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLPRGWDKLVREFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEAL 414
Cdd:PRK13292 530 TDREKIFDIVEMITGGRMHPAWFRIGGVAEDLPEGWKEAVEAFLRWFPGRLKEYEDLLTGNPIFKARLKGVGVITRDEAV 609
                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  415 EWGTTGAGLRATGCDFDLRKARPYSGYENFEFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPEGPYKADHPLTT 494
Cdd:PRK13292 610 EWGISGPNLRACGLAWDLRKKMPYGGYDRFDFEVPTAEGGDCYARYLVRMEEMRQSLRIVRQAAAGMPGGRWISDDYRYV 689
                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  495 PPPKERTLQHIETLITHFLQVSWGPVMPANEAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVINGSMI 574
Cdd:PRK13292 690 LPQKRDTLKDIESLIHHFVNVTRGPAPPKGECYAAIEAPKGENGYFVVSDGLNIAYRMRIRTPSFPHIQALPLLSRGWLV 769
                        570
                 ....*....|....*....
gi 81622299  575 ADLIAYLGSIDFVMADVDR 593
Cdd:PRK13292 770 ADFLAIIGSIDFVLADLDR 788
NuoD COG0649
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
205-593 0e+00

NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440414 [Multi-domain]  Cd Length: 390  Bit Score: 664.08  E-value: 0e+00
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 205 ENEDYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIPYTDRIDYLGGVMNNLPYVLS 284
Cdd:COG0649   2 LETEEMVLNMGPQHPSTHGVLRLVLELDGETVVDADPHIGYLHRGFEKLAENRTYTQIIPYTDRLDYLSPMNNELAYVLA 81
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 285 VEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAH 364
Cdd:COG0649  82 VEKLLGIEVPERAQYIRVILAELNRIASHLLWLGTYALDLGAMTPFLYAFREREKILDLFEEVTGARMTHNYFRIGGVRR 161
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 365 DLPRGWDKLVREFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYENF 444
Cdd:COG0649 162 DLPDGFLEKVREFLDYFPKRLDEYEDLLTGNRIFKARTKGVGVLSAEDAIALGVTGPVLRASGVDYDLRKDEPYSGYDEL 241
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 445 EFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPEGPYKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPAN 524
Cdd:COG0649 242 DFDVPVGTEGDCYDRYLVRMEEMRQSLRIIRQCLDKLPEGPVMAKDPKIAPPPKEEMKTSMEALIHHFKLVTEGFKVPAG 321
                       330       340       350       360       370       380
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 81622299 525 EAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVINGSMIADLIAYLGSIDFVMADVDR 593
Cdd:COG0649 322 EVYAAVESPRGELGFYLVSDGGTKPYRVKIRSPSFANLQALPEMLKGHMLADVVAILGSLDIVLGEVDR 390
NuoD TIGR01962
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
208-593 0e+00

NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]


Pssm-ID: 273898  Cd Length: 386  Bit Score: 626.68  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   208 DYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIPYTDRIDYLGGVMNNLPYVLSVEK 287
Cdd:TIGR01962   1 EFMILNLGPQHPSTHGVLRLILELDGEYVVRADPHIGYLHRGTEKLAENRTYQQYIPYTDRLDYLSPFSNELAYCLAVEK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   288 LAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLP 367
Cdd:TIGR01962  81 LLGIEVPRRAQVIRVMLSELNRISSHLLFIGTHALDLGAMTPFLYAFREREKILDLFEAITGARMHSAYFRIGGVALDLP 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   368 RGWDKLVREFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYENFEFE 447
Cdd:TIGR01962 161 ENWLEEIREFLEQFPKRLRDYETLLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSGIDWDIRKSEPYEGYDEYDFD 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   448 VPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPEGPYKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANEAF 527
Cdd:TIGR01962 241 VPVGGNGDCYDRYLLRVLEMRESIKIIEQCLEKMPPGPIKADNPKLAPPPKERMLTSMEALIHHFKLVTEGFRVPAGEVY 320
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 81622299   528 QMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVINGSMIADLIAYLGSIDFVMADVDR 593
Cdd:TIGR01962 321 VPIESPKGELGFYIISDGGTKPYRLKIRAPSFAHLQALEAMCVGHYLADLIAILGSIDPVMGEVDR 386
PRK06075 PRK06075
NADH-quinone oxidoreductase subunit D;
208-593 1.53e-167

NADH-quinone oxidoreductase subunit D;


Pssm-ID: 180385 [Multi-domain]  Cd Length: 392  Bit Score: 481.96  E-value: 1.53e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  208 DYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIPYTDRIDYLGGVMNNLPYVLSVEK 287
Cdd:PRK06075   5 RNYTLNFGPQHPAAHGVLRLILELDGEVVVRADPHIGYLHRGTEKLAEYRTYLQAIPYFDRLDYVSPMNNEHAYCLAVEK 84
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  288 LAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLP 367
Cdd:PRK06075  85 LLGIEVPERAQYIRVLFLELNRILSHLLWLGTHALDLGAMTVFLWGFREREKLLDLYEAVTGARMHHAYIRPGGVRRDLP 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  368 RGWDKLVREFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYENFEFE 447
Cdd:PRK06075 165 DGLLEDIRDFLDYFPKRLDDYETLLTDNRIWKQRLVGVGVVSKERALALGFTGPMLRASGVAWDLRKSQPYEVYDELDFD 244
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  448 VPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNM--PEGPYKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANE 525
Cdd:PRK06075 245 VPVGKNGDCYDRYLVRVEEMRQSLRIIEQCLDRLrpPPGPVMVDDPKIAPPARLEMKTSMEALIHHFKLVTEGFRVPAGE 324
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81622299  526 AFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVINGSMIADLIAYLGSIDFVMADVDR 593
Cdd:PRK06075 325 VYAAVESPKGEFGVYLVSDGGNKPYRVKIRAPSFAHLQALDEMCRGHMLADVVAIIGSLDIVFGEVDR 392
Complex1_49kDa pfam00346
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
324-593 6.86e-157

Respiratory-chain NADH dehydrogenase, 49 Kd subunit;


Pssm-ID: 459772  Cd Length: 270  Bit Score: 449.91  E-value: 6.86e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   324 VGAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLPRGWDKLVREFLDWMPKRLDEYETAALKNSILRGRTI 403
Cdd:pfam00346   1 LGAMTPFLYAFREREKILDLFERITGARMTHSYFRPGGVARDLPEGFLEKIREFLDYFPKRLDEYEDLLTRNRIFKDRTK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   404 GVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYENFEFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPE 483
Cdd:pfam00346  81 GVGVLSAEDALALGVTGPMLRASGVPWDLRKDEPYSGYDELDFDVPVGTEGDCYDRYLVRMEEMRQSLRIIRQCLDKLPE 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   484 GPYKADHPLTTPPPKERTLQHIETLITHFLQVSWGPVMPANEAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQ 563
Cdd:pfam00346 161 GPVMADDPKIALPPKEEMKTSMEALIHHFKLVTEGFRVPAGEVYVAVEAPKGELGFYLVSDGGTKPYRVKIRAPSFANLQ 240
                         250       260       270
                  ....*....|....*....|....*....|
gi 81622299   564 QIPSVINGSMIADLIAYLGSIDFVMADVDR 593
Cdd:pfam00346 241 ALPEMCKGHMLADVVAIIGSIDIVMGEVDR 270
PRK12322 PRK12322
NADH-quinone oxidoreductase subunit D;
210-593 1.01e-143

NADH-quinone oxidoreductase subunit D;


Pssm-ID: 183437 [Multi-domain]  Cd Length: 366  Bit Score: 420.26  E-value: 1.01e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  210 MFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIPYTDRIDYLGGVMNNLPYVLSVEKLA 289
Cdd:PRK12322   7 MLLNVGPQHPSTHGVFRLVLKIDGEIIVEATPVIGYLHRGTEKLAESLQYTQIIPYTDRMDYLSAMTNNYVYCHAVETMM 86
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  290 GIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLPRG 369
Cdd:PRK12322  87 GLEVPERAEYLRVIAMELGRIASHLVWWGTYLLDIGAVSPFLYAFREREMIINLLNELCGARLTFNYMRIGGVKWDAPDG 166
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  370 WDKLVREFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYENFEFEVP 449
Cdd:PRK12322 167 WIEKVKEFVPYMREQLAGYHDLVTGNEIFLNRVKGVGIYSAEEAISYSLSGVNLRCTGVNWDLRKDEPYSIYDRFDFDIP 246
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  450 LAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPE-GPYKADHPLTTPPPKertlqhietlithflqvswgpvmpaNEAFQ 528
Cdd:PRK12322 247 VGSVGDCWDRYVCRMQEIEQSLKIIEQAVEQFPKeGPVLAKVPKIIKAPK-------------------------GEAYV 301
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 81622299  529 MIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVINGSMIADLIAYLGSIDFVMADVDR 593
Cdd:PRK12322 302 RIESPRGEIGCYIASDGKKKPYRLKFRRPSFYNLQILPKLLKGENIANLIAILGSIDIVLGEVDG 366
PRK07415 PRK07415
NAD(P)H-quinone oxidoreductase subunit H; Validated
210-593 2.91e-112

NAD(P)H-quinone oxidoreductase subunit H; Validated


Pssm-ID: 180969 [Multi-domain]  Cd Length: 394  Bit Score: 340.95  E-value: 2.91e-112
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  210 MFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIPYTDRIDYLGGVMNNLPYVLSVEKLA 289
Cdd:PRK07415  11 MVLNFGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMYVPYVSRWDYAAGMFNEAITVNAPEKLA 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  290 GIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQRAYKVVEAITGFRL-HPAWYRIGGVAHDLPR 368
Cdd:PRK07415  91 NIPVPKRASYIRVIMLELNRIANHLLWLGPFLADVGAQTPFFYIFREREMIYDLWEAATGQRLiNNNYFRIGGVAADLPY 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  369 GWDKLVREFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYENFEFEV 448
Cdd:PRK07415 171 GWLEKCLDFCDYFGPKIDEYEKLITNNPIFRRRIEGLGTISREEAINWGLSGPMLRASGVKWDLRKVDHYECYDDFDWDV 250
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  449 PLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPEGPY---KADHPLTTPPPKERTLQHietlitHFLQVSWGPV--MPA 523
Cdd:PRK07415 251 AWETEGDCLARYRVRIEEMRESVKIIRQACKGIPGGPYenlEAKRMAEGKKSEWNGFDY------QYVAKKVAPTfkIPN 324
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  524 NEAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVINGSMIADLIAYLGSIDFVMADVDR 593
Cdd:PRK07415 325 GELYVRLESGKGELGIFIQGNNDVTPWRWKIRAADFNNLQILPHLLKGAKVADIMAILGSIDVIMGSVDR 394
ndhH CHL00017
NADH dehydrogenase subunit 7
200-593 2.94e-99

NADH dehydrogenase subunit 7


Pssm-ID: 176960  Cd Length: 393  Bit Score: 307.39  E-value: 2.94e-99
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  200 MKRHGENEDYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIPYTDRIDYLGGVMNNL 279
Cdd:CHL00017   1 MTVPATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  280 PYVLSVEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRI 359
Cdd:CHL00017  81 ITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  360 GGVAHDLPRGW-DKLVrEFLDWMPKRLDEYETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPY 438
Cdd:CHL00017 161 GGVAADLPYGWiDKCL-DFCDYFLTGVAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHY 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  439 SGYENFEFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPEGPYKADHPLTTPPPKERTLQHIEtliTHFLQVSWG 518
Cdd:CHL00017 240 ECYDEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEARRFDREKDSEWNDFE---YRFISKKPS 316
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 81622299  519 PV--MPANEAFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVINGSMIADLIAYLGSIDFVMADVDR 593
Cdd:CHL00017 317 PTfeLSKQELYVRVEAPKGELGIFLIGDDSVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
NuoC COG0852
NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; ...
14-177 4.65e-61

NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 27 kD subunit (chain C) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440613 [Multi-domain]  Cd Length: 164  Bit Score: 199.67  E-value: 4.65e-61
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  14 ADDQDIVVELNSRFGAETFTVQpTRTGMPVLWVPRERLIEVLTFLRQVpKPYVMLYDLHGVDERLRTHRrglpsadFSVF 93
Cdd:COG0852   2 SELEELLEALEEKFGDAVLEVE-EARGELTLTVPPEDLVDVARFLRDD-LGFDHLSDLTGVDYPERGDR-------FEVV 72
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  94 YHLMSLERNSDVMIKVALSERDLNLPTATRIWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDYPARATE 173
Cdd:COG0852  73 YHLLSLTHNRRLRLKVFVPRDDPVVPSVTDVWPGANWHEREAYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLEGYV 152

                ....
gi 81622299 174 FDPY 177
Cdd:COG0852 153 EVRY 156
Complex1_30kDa pfam00329
Respiratory-chain NADH dehydrogenase, 30 Kd subunit;
44-173 1.08e-53

Respiratory-chain NADH dehydrogenase, 30 Kd subunit;


Pssm-ID: 459763 [Multi-domain]  Cd Length: 121  Bit Score: 178.44  E-value: 1.08e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299    44 LWVPRERLIEVLTFLRQVPKPYVMLYDLHGVDERlrthrrglPSADFSVFYHLMSLERNSDVMIKVALsERDLNLPTATR 123
Cdd:pfam00329   1 VTVDPEDLLEVARFLRDDELGFDHLSDLTGVDYP--------EEGRFEVVYHLLSITHNVRVRVKVPL-EDDPVVPSVTD 71
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 81622299   124 IWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDYPARATE 173
Cdd:pfam00329  72 IWPGANWYEREVYDMFGIVFEGHPDLRRILLPEDWEGHPLRKDFPLTGYV 121
NuoC_fam TIGR01961
NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH ...
42-171 2.91e-51

NADH (or F420H2) dehydrogenase, subunit C; This model describes the C subunit of the NADH dehydrogenase complex I in bacteria, as well as many instances of the corresponding mitochondrial subunit (NADH dehydrogenase subunit 9) and of the F420H2 dehydrogenase in Methanosarcina. Complex I contains subunits designated A-N. This C subunit often occurs as a fusion protein with the D subunit. This model excludes the NAD(P)H and plastoquinone-dependent form of chloroplasts and [Energy metabolism, Electron transport]


Pssm-ID: 273897 [Multi-domain]  Cd Length: 121  Bit Score: 172.03  E-value: 2.91e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299    42 PVLWVPRERLIEVLTFLRQVPKPYVMLYDLHGVDeRLRTHRrglpsadFSVFYHLMSLERNSDVMIKVALSERDlNLPTA 121
Cdd:TIGR01961   1 LVVWIKKEQLLEVLTFLKDPALGFELLTDVSGVD-YPKEKR-------FEVVYHLLSIKKNRRIRLKVRLSEDD-PVPSL 71
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 81622299   122 TRIWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDYPARA 171
Cdd:TIGR01961  72 TSVFPTANWYERETYDMYGIVFDGHPDLRRILMPDDFEGHPLRKDYPLTG 121
PRK06074 PRK06074
NADH dehydrogenase subunit C; Provisional
46-168 8.43e-39

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 235691 [Multi-domain]  Cd Length: 189  Bit Score: 140.81  E-value: 8.43e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   46 VPRERLIEVLTFLRQVPKP-YVMLYDLHGVDERLRTHRrglpsadFSVFYHLMSLERNSDVMIKVALSErDLNLPTATRI 124
Cdd:PRK06074  33 VPAEKILEVLTFLRDDPELrFEQLIDLTGVDYPERGKR-------FEVVYHLLSYKHNVRLRVKVRAPE-DPVVPSVVDI 104
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 81622299  125 WPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDYP 168
Cdd:PRK06074 105 WPSANWYEREAYDLYGIVFEGHPDLRRILTDYGFEGHPLRKDFP 148
HycE1 COG3262
Ni,Fe-hydrogenase III component G [Energy production and conversion];
22-499 6.96e-33

Ni,Fe-hydrogenase III component G [Energy production and conversion];


Pssm-ID: 442493 [Multi-domain]  Cd Length: 523  Bit Score: 132.38  E-value: 6.96e-33
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299  22 ELNSRFGAETFTVQPTRTGMPVLWVPRERLIEVLTFLRQVPKPYVMLydLHGVDERLRTHRrglpsadFSVFYHLMSLER 101
Cdd:COG3262   6 ELRARFGGSILERRWVRPNEVWVEVDREDLPELAEFLAEGGGGRLAA--LWGNDERELGGG-------FAVYYVFALEGE 76
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 102 NSDVMIKVALSERDLNLPTATRIWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQG--HPLRKDyparateFDPYSL 179
Cdd:COG3262  77 GALVTLKVSVPKDDPVFPSITDLFPAASWYEREIRDLFGIVPEGHPDPRRLVLHDDWPEgiYPLRKD-------FKGGPR 149
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 180 SAAKQDLEQEalrfkpedwgmkRHGENEDYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSW 259
Cdd:COG3262 150 PAPAPAEEYF------------RPVEGEGIEVVVVGPVHAGIIEPGHFFFSVGGEIVIRLEELLYYVHKGEEKLEEGEEG 217
                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 260 HSFIPYTDRIDYLGGVMNNLPYVLSVEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGAMTPVFFTFTDRQR 339
Cdd:COG3262 218 RAGLVLAEAAGGDSGAAAAAAAAAAAEAAAAAAIPPRAALLRLLRLLLERLELHLGLLGLGGLDAGGAGAAGAAALLRRR 297
                       330       340       350       360       370       380       390       400
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 340 AYKVVEAITGFRLHPAwYRIGGVAHDLPRGW--DKLVREFLDWMPKRLDEYETAALKNS-ILRGRTIGVAQYNTKEALew 416
Cdd:COG3262 298 LERLLEALLLRRGRRG-GGGGGGGGRDDDDLlaDLILELLLDLEEEEEELEELADLLSRlIDRLDTTGGLALKAAAAG-- 374
                       410       420       430       440       450       460       470       480
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299 417 GTTGAGLRATGCDFDLRKARPYSGYENFEFEVPLAHNGDAYDRCMVKMGEMRQSLRIIEQCLKNMPEGPYKADHPLTTPP 496
Cdd:COG3262 375 GVGGAAGRASGGRGDRRRRAPYAAYDDVDLRVVVLTVGDVDVRRARVREELEEISRLIIILLDLLLLGPGGLLVGGEPAP 454

                ...
gi 81622299 497 PKE 499
Cdd:COG3262 455 AEG 457
PRK07785 PRK07785
NADH dehydrogenase subunit C; Provisional
44-168 1.28e-30

NADH dehydrogenase subunit C; Provisional


Pssm-ID: 181115 [Multi-domain]  Cd Length: 235  Bit Score: 119.71  E-value: 1.28e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   44 LWVPRERLIEVLTFLRQVPK-PYVMLYDLHGVDERLRTHRRglpsadFSVFYHLMSLERNSDVMIKVALSERDLNLPTAT 122
Cdd:PRK07785  93 LHVRREHLVEVAQTLRDDPAlRFELCLGVSGVHYPHDTGRE------LHAVYHLTSITHNRRIRLEVAVPDADPHIPSLV 166
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 81622299  123 RIWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDYP 168
Cdd:PRK07785 167 SVYPTNDWHERETYDFFGIVFDGHPALTRIEMPDDWVGHPQRKDYP 212
PRK12494 PRK12494
NAD(P)H-quinone oxidoreductase subunit J;
40-167 3.51e-26

NAD(P)H-quinone oxidoreductase subunit J;


Pssm-ID: 183557 [Multi-domain]  Cd Length: 172  Bit Score: 105.04  E-value: 3.51e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   40 GMPVLWVPRERLIEVLTFLRQVPKPYVML---YDLhGVDERLRThrrglpsadfsvFYHLMSLERNSD----VMIKVALS 112
Cdd:PRK12494  39 GVEIIKVEPDFLLPIATALYAYGFNYLQCqggYDE-GPGKELVS------------FYHLIKVSDNADkpreVRLKVFLP 105
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 81622299  113 ERDLNLPTATRIWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDY 167
Cdd:PRK12494 106 RDDPRVPSVYWIWKGADWQERETYDMYGINFEGHPNLKRILMPEDWVGWPLRKDY 160
PRK08491 PRK08491
NADH-quinone oxidoreductase subunit C;
43-174 3.90e-25

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 181449  Cd Length: 263  Bit Score: 104.75  E-value: 3.90e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   43 VLWVPRERLIEVLTFLRQVPkpYVMLYDLHGVDerLRTHRRGlpsadFSVFYHLMSLERNSDVMIKVALSERDlNLPTAT 122
Cdd:PRK08491  60 VIWIKKDDNFKVLKILKHLG--YECLSEMSAID--FLAKKGG-----FEVFYQLLSMSKRKRVRVKCFLKEKE-ALQSVS 129
                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 81622299  123 RIWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDYPARATEF 174
Cdd:PRK08491 130 FLFKSANWSEREMYDMFGIVINNHPYLKRILMPDDWVGHPLLKSYPLKGDEF 181
PRK07735 PRK07735
NADH-quinone oxidoreductase subunit C;
42-167 5.20e-25

NADH-quinone oxidoreductase subunit C;


Pssm-ID: 236081 [Multi-domain]  Cd Length: 430  Bit Score: 107.76  E-value: 5.20e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81622299   42 PVLWVPRERLIEVLTFLR---QVPKPYvmLYDLHGVDerLRTHrrglpsadFSVFYHLMSLERNSDVMIKVALSERDLNL 118
Cdd:PRK07735 307 PTLVVEPEKYYEVAELLRfheQLAFDY--LSELHGTD--FVTH--------MEVYVHLYSYGKRQSVAVKVKLDREAPQV 374
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 81622299  119 PTATRIWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDY 167
Cdd:PRK07735 375 ESVTPLWKGANWPEREAYDLLGIVFKGHPNLSRILLPDDWVGHPLRKDY 423
ndhJ CHL00012
NADH dehydrogenase subunit J
94-167 8.24e-21

NADH dehydrogenase subunit J


Pssm-ID: 176955 [Multi-domain]  Cd Length: 158  Bit Score: 89.37  E-value: 8.24e-21
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 81622299   94 YHLMSLERNSD----VMIKVALSERDLNLPTATRIWPNANWYEREVWDMYGITFTGHPHLTRMLMPPTWQGHPLRKDY 167
Cdd:CHL00012  69 YHLTRIQYGVDqpeeVCIKVFVPRKNPRIPSVFWVWKSADFQERESYDMLGISYDNHPRLKRILMPESWIGWPLRKDY 146
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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