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RecName: Full=Photosystem I P700 chlorophyll a apoprotein A1; AltName: Full=PSI-A; AltName: Full=PsaA
Protein Classification
photosystem I psaA/psaB family protein ( domain architecture ID 954 )
photosystem I psaA/psaB family protein may bind P700, the primary electron donor of PSI, which is a plastocyanin-ferredoxin oxidoreductase essential for light-driven electron transport, as well as the electron acceptors A0, A1 and FX
List of domain hits
Name
Accession
Description
Interval
E-value
psaB super family
cl08224 photosystem I P700 chlorophyll a apoprotein A2
44-668
0e+00
photosystem I P700 chlorophyll a apoprotein A2
CHL00056 :Pssm-ID: 471792
Cd Length: 750
Bit Score: 699.57
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 44 TTT A IWNLHADAHDF - S NS S Y L --- S KQ VF A A NLAHIGVV F I WLSGM H FHGA Y FSNY LD WL Q DP - S I A P T AQ Q V SN I AN Q 118
Cdd:CHL00056 42 TTT W IWNLHADAHDF d S HT S D L eei S RK VF S A HFGQLSII F L WLSGM Y FHGA R FSNY EA WL S DP t H I K P S AQ V V WP I VG Q 121
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 119 SV LN P -------- I RV TSGFF NL W L A E GITS TY QL KVI A AFG L IAS AL CFLGSY FH M H SSTS ---- F TR V lntkl T S LST 186
Cdd:CHL00056 122 EI LN G dvgggfrg I QI TSGFF QI W R A S GITS EL QL YCT A IGA L VFA AL MLFAGW FH Y H KAAP klaw F QD V ----- E S MLN 196
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 187 HHL V GLLGLGSL A WAGH L IH I SLP V N I LL N AGV A --- V P S PH SLLSSKA vat IVE QL -- SF S ------------------ 243
Cdd:CHL00056 197 HHL A GLLGLGSL S WAGH Q IH V SLP I N Q LL D AGV D pke I P L PH EFILNRD --- LLA QL yp SF A kgltpfftlnwseysdfl 273
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 244 ---- A L TSSD G YV W qp L VYS A M HH F A L A LVLIVGSVL ------------------- GP LSTASNPLMSFTVGS SWH LV L G 300
Cdd:CHL00056 274 tfrg G L NPVT G GL W -- L TDI A H HH L A I A VLFLIAGHM yrtnwgighslkeileahk GP FTGEGHKGLYEILTT SWH AQ L A 351
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 301 VQ L FVT G TASVLY A QMSNAY P V YPYL L TD HP T VV SLF V HHMWIGGF FL VGA F AH LS I GL VRD TL P QS ----- FSV VL TQ R 375
Cdd:CHL00056 352 LN L AML G SLTIIV A HHMYSM P P YPYL A TD YG T QL SLF T HHMWIGGF LI VGA A AH AA I FM VRD YD P TT rynnl LDR VL RH R 431
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 376 D I I LG HL T WV VA FLG V HSFGLY V HNDTM Q ALGRP D DMFSD N AI S L L P V FA R W ---- ST L TLNS T ---------------- 435
Cdd:CHL00056 432 D A I IS HL N WV CI FLG F HSFGLY I HNDTM S ALGRP Q DMFSD T AI Q L Q P I FA Q W iqnt HA L APGA T apgatastsltwgggd 511
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 436 ---- G SA V SV L GVE L S TADF M V T HIHAFTIH T TVLIL V KG F L Y ARSSRL VN DK YK L D FR Y PCDGPGRGGTCQ I S P WDHVF 511
Cdd:CHL00056 512 lvav G GK V AL L PIP L G TADF L V H HIHAFTIH V TVLIL L KG V L F ARSSRL IP DK AN L G FR F PCDGPGRGGTCQ V S A WDHVF 591
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 512 LGLFWMYNSISVVIFHF F W EY QS NLASIKASA G GSIRALASD F ELN SI NT NGWLR N FLW SG A A QVIQSYGS P L A AYGL T F 591
Cdd:CHL00056 592 LGLFWMYNSISVVIFHF S W KM QS DVWGSISDQ G VVTHITGGN F AQS SI TI NGWLR D FLW AQ A S QVIQSYGS S L S AYGL F F 671
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17380216 592 L AS HFVWA L SLMFLFSGRGYWQELIES VL WAH H KL Y V V P H IQPRALSI TS GRAVG LT HYLLGGI G TTW S FFLARI V A 668
Cdd:CHL00056 672 L GA HFVWA F SLMFLFSGRGYWQELIES IV WAH N KL K V A P A IQPRALSI VQ GRAVG VA HYLLGGI A TTW A FFLARI I A 748
Name
Accession
Description
Interval
E-value
psaA
CHL00056 photosystem I P700 chlorophyll a apoprotein A1
44-668
0e+00
photosystem I P700 chlorophyll a apoprotein A1
Pssm-ID: 176996
Cd Length: 750
Bit Score: 699.57
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 44 TTT A IWNLHADAHDF - S NS S Y L --- S KQ VF A A NLAHIGVV F I WLSGM H FHGA Y FSNY LD WL Q DP - S I A P T AQ Q V SN I AN Q 118
Cdd:CHL00056 42 TTT W IWNLHADAHDF d S HT S D L eei S RK VF S A HFGQLSII F L WLSGM Y FHGA R FSNY EA WL S DP t H I K P S AQ V V WP I VG Q 121
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 119 SV LN P -------- I RV TSGFF NL W L A E GITS TY QL KVI A AFG L IAS AL CFLGSY FH M H SSTS ---- F TR V lntkl T S LST 186
Cdd:CHL00056 122 EI LN G dvgggfrg I QI TSGFF QI W R A S GITS EL QL YCT A IGA L VFA AL MLFAGW FH Y H KAAP klaw F QD V ----- E S MLN 196
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 187 HHL V GLLGLGSL A WAGH L IH I SLP V N I LL N AGV A --- V P S PH SLLSSKA vat IVE QL -- SF S ------------------ 243
Cdd:CHL00056 197 HHL A GLLGLGSL S WAGH Q IH V SLP I N Q LL D AGV D pke I P L PH EFILNRD --- LLA QL yp SF A kgltpfftlnwseysdfl 273
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 244 ---- A L TSSD G YV W qp L VYS A M HH F A L A LVLIVGSVL ------------------- GP LSTASNPLMSFTVGS SWH LV L G 300
Cdd:CHL00056 274 tfrg G L NPVT G GL W -- L TDI A H HH L A I A VLFLIAGHM yrtnwgighslkeileahk GP FTGEGHKGLYEILTT SWH AQ L A 351
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 301 VQ L FVT G TASVLY A QMSNAY P V YPYL L TD HP T VV SLF V HHMWIGGF FL VGA F AH LS I GL VRD TL P QS ----- FSV VL TQ R 375
Cdd:CHL00056 352 LN L AML G SLTIIV A HHMYSM P P YPYL A TD YG T QL SLF T HHMWIGGF LI VGA A AH AA I FM VRD YD P TT rynnl LDR VL RH R 431
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 376 D I I LG HL T WV VA FLG V HSFGLY V HNDTM Q ALGRP D DMFSD N AI S L L P V FA R W ---- ST L TLNS T ---------------- 435
Cdd:CHL00056 432 D A I IS HL N WV CI FLG F HSFGLY I HNDTM S ALGRP Q DMFSD T AI Q L Q P I FA Q W iqnt HA L APGA T apgatastsltwgggd 511
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 436 ---- G SA V SV L GVE L S TADF M V T HIHAFTIH T TVLIL V KG F L Y ARSSRL VN DK YK L D FR Y PCDGPGRGGTCQ I S P WDHVF 511
Cdd:CHL00056 512 lvav G GK V AL L PIP L G TADF L V H HIHAFTIH V TVLIL L KG V L F ARSSRL IP DK AN L G FR F PCDGPGRGGTCQ V S A WDHVF 591
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 512 LGLFWMYNSISVVIFHF F W EY QS NLASIKASA G GSIRALASD F ELN SI NT NGWLR N FLW SG A A QVIQSYGS P L A AYGL T F 591
Cdd:CHL00056 592 LGLFWMYNSISVVIFHF S W KM QS DVWGSISDQ G VVTHITGGN F AQS SI TI NGWLR D FLW AQ A S QVIQSYGS S L S AYGL F F 671
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17380216 592 L AS HFVWA L SLMFLFSGRGYWQELIES VL WAH H KL Y V V P H IQPRALSI TS GRAVG LT HYLLGGI G TTW S FFLARI V A 668
Cdd:CHL00056 672 L GA HFVWA F SLMFLFSGRGYWQELIES IV WAH N KL K V A P A IQPRALSI VQ GRAVG VA HYLLGGI A TTW A FFLARI I A 748
PsaA
COG5701 Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem ...
43-668
0e+00
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem I reaction center subunit A1, PsaA is part of the Pathway/BioSystem: Photosystem I
Pssm-ID: 444411
Cd Length: 755
Bit Score: 686.19
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 43 Q TTT A IWNLHA D AHDF ---- S NSSYL S KQV F A A NLA H IG VVFIWLSGM H FHGA Y FSNY LD WL Q DP S - IA P T AQ Q V SN I AN 117
Cdd:COG5701 43 K TTT W IWNLHA L AHDF dtht S DLEEI S RKI F S A HFG H LA VVFIWLSGM F FHGA R FSNY TA WL A DP T g VK P S AQ V V WP I VG 122
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 118 Q SV LN P -------- I RV TSG F F NL W L A E GIT STY QL KVI A AFG L IAS AL CFLGSY FH M H SSTSFTRVLN t KLT S LST HHL 189
Cdd:COG5701 123 Q EI LN A dvgggfhg I QI TSG L F QM W R A W GIT NEF QL YCT A IGA L VMA AL MLFAGW FH Y H KRAPKLEWFQ - NVE S MLN HHL 201
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 190 V GLLGLGSLAW A GHLIH I SLPVN I LL N AGVA --- V P S PH SL L SSKAV A TI ------------------- VEQ L S F SA - L T 246
Cdd:COG5701 202 A GLLGLGSLAW T GHLIH V SLPVN A LL D AGVA aad I P L PH EF L NPSLM A QL ypgfasgvgpfftlnwgaf SDF L T F KG g L N 281
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 247 SSD G YV W qp L VYS A M HH F A L A LVL I VG ------------ S VLGP L STASN P LMS FT ----------- VGS SWH LV L GVQ L 303
Cdd:COG5701 282 PVT G GL W -- L TDI A H HH L A I A VLF I IA ghmyrtnwgigh S MKEI L EAHKG P PLL FT gpeghkglyev LTT SWH AQ L AIN L 359
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 304 FVT G TA S VLY A QMSN A Y P V YPYL L TD H PT VV SLF V HHMWIGGF FL VGA F AH LS I GL VRD TL P QS ----- FSV VL TQ RD I I 378
Cdd:COG5701 360 AMM G SL S IIV A HHMY A M P P YPYL A TD Y PT QL SLF T HHMWIGGF LI VGA A AH AA I FM VRD YD P AV nqnnv LDR VL RH RD A I 439
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 379 LG HL T WV VA FLG V HSFGLY V HNDTM Q ALGRP D DMFSD N AI S L L PVFA R W ------------------ S T LTLNST G SA V S 440
Cdd:COG5701 440 IS HL N WV CI FLG F HSFGLY I HNDTM R ALGRP Q DMFSD T AI Q L Q PVFA Q W iqnlhasapgtatapnag G T VSEAFG G DV V A 519
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 441 V L G ------ VE L S TADFM VT HIHAFTIH T TVLIL V KG F L Y ARSSRL VN DK YK L D FR Y PCDGPGRGGTCQ I S P WDHVFLGL 514
Cdd:COG5701 520 V G G kvammp IP L G TADFM IH HIHAFTIH V TVLIL L KG V L F ARSSRL IP DK AN L G FR F PCDGPGRGGTCQ V S A WDHVFLGL 599
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 515 FWMYNS I SVVIFHF F W EY QS NLASIKASA G GSIRALASD F ELN SI NT NGWLR N FLW SGAA QVI Q SYGS P L A AYGL T FL AS 594
Cdd:COG5701 600 FWMYNS L SVVIFHF S W KM QS DVWGTVNAD G SVNHITGGN F AQS SI TI NGWLR D FLW AQSS QVI N SYGS A L S AYGL M FL GA 679
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17380216 595 HFVWA L SLMFLFSGRGYWQELIES VL WAH H KL Y V V P H IQPRALSIT S GRAVG LT HYLLGGI G TTW S FFLAR IV A 668
Cdd:COG5701 680 HFVWA F SLMFLFSGRGYWQELIES IV WAH N KL K V A P A IQPRALSIT Q GRAVG VA HYLLGGI A TTW A FFLAR LI A 753
psaA
TIGR01335 photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, ...
43-668
0e+00
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaA only. [Energy metabolism, Photosynthesis]
Pssm-ID: 130402 [Multi-domain]
Cd Length: 752
Bit Score: 656.26
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 43 Q TTT A IWNLHADAHDF ---- S NSSYL S KQV F A A NLAHIG V V FIWLSGM H FHGA Y FSNY LD WL Q DP S - I A P T AQ Q V SN I AN 117
Cdd:TIGR01335 44 K TTT W IWNLHADAHDF dsht S DLEDI S RKI F S A HFGQLS V I FIWLSGM Y FHGA R FSNY EA WL S DP T h I K P S AQ V V WP I VG 123
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 118 Q SV LN P -------- I RV TSGFF N LW L A E GIT STY QL K V I A AF GL IASA L CFLGSY FH M H SSTSFTRVLNT k LT S LST HHL 189
Cdd:TIGR01335 124 Q EI LN G dvgggfhg I QI TSGFF Q LW R A S GIT NEL QL Y V T A IG GL VMAG L MLFAGW FH Y H KAAPKLEWFQN - VE S MLN HHL 202
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 190 V GLLGLGSL A WAGH L IH I SLP V N I LL N AGV A --- V P S PH SLLSSKAVATIV -------------------- EQ L S F SA - L 245
Cdd:TIGR01335 203 A GLLGLGSL S WAGH Q IH V SLP I N K LL D AGV D pkd I P L PH EFILNRELMAQL ypsfasgltpfftlnwgays DF L T F RG g L 282
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 246 TSSD G YV W qp L VYS A M HH F A L A LVL I VGSVL ------------------- GP LSTASNPLMSFTVGS SWH LV L GVQ L FVT 306
Cdd:TIGR01335 283 NPVT G GL W -- L SDI A H HH L A I A VLF I IAGHM yrtnwgighsikeileahk GP FTGSGHKGLYEALTT SWH AQ L AIN L AML 360
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 307 G TA S VLY A QMSN A Y P V YPYL L TD H PT VV SLF V HHMWIGGF FL VGA F AH LS I GL VRD TL P QS ----- FSV V LTQ RD I I LG H 381
Cdd:TIGR01335 361 G SL S IIV A HHMY A M P P YPYL A TD Y PT QL SLF T HHMWIGGF LI VGA A AH GA I FM VRD YD P SQ nynnv LDR V IRH RD A I IS H 440
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 382 L T WV VA FLG V HSFGLY V HNDTM Q ALGRP D DMFSD N AI S L L PVFA R W ---- S TL TLNS T ------------------- G SA 438
Cdd:TIGR01335 441 L N WV CI FLG F HSFGLY I HNDTM R ALGRP Q DMFSD T AI Q L Q PVFA Q W iqnl H TL APGN T apnalattsyafggevvav G GK 520
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 439 V SVLGVE L S TADFMV T HIHAFTIH T TVLIL V KG F L Y AR S SRL VN DK YK L D FR Y PCDGPGRGGTCQ I S P WDHVFLGLFWMY 518
Cdd:TIGR01335 521 V AMMPIK L G TADFMV H HIHAFTIH V TVLIL L KG V L F AR N SRL IP DK AN L G FR F PCDGPGRGGTCQ V S G WDHVFLGLFWMY 600
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 519 N S ISVVIFHF F W EY QS NLASIKASA G GSIRALASD F ELNS I NT NGWLR N FLW SG A A QVIQSYGS P L A AYGL T FL AS HF V W 598
Cdd:TIGR01335 601 N C ISVVIFHF S W KM QS DVWGTVSQN G LVSHITGGN F AQSA I TI NGWLR D FLW AQ A S QVIQSYGS S L S AYGL M FL GA HF I W 680
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 599 A L SLMFLFSGRGYWQELIES VL WAH H KL Y V V P H IQPRALSI TS GRAVG LT HYLLGGI G TTW S FFLARI VA 668
Cdd:TIGR01335 681 A F SLMFLFSGRGYWQELIES IV WAH N KL K V A P A IQPRALSI IQ GRAVG VA HYLLGGI A TTW A FFLARI IS 750
PsaA_PsaB
pfam00223 Photosystem I psaA/psaB protein;
43-664
0e+00
Photosystem I psaA/psaB protein;
Pssm-ID: 459719
Cd Length: 719
Bit Score: 624.88
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 43 Q TT TA IWNLHA D AHDF ---- SNSSY LS KQV F A A NLA H IGVV F I WLSG MH FHGA Y FSN YLD WL Q DP - SIA P T A QQ V SNIAN 117
Cdd:pfam00223 10 K TT RW IWNLHA T AHDF eshd GDTEE LS RKI F S A HFG H LAII F L WLSG NL FHGA W FSN FEA WL A DP l HVK P I A HV V WPHFG 89
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 118 Q SV LN ---------- PIRV TSG F F NL W LAE G I T STY QL KVI A AFG LI AS AL CFLGSYF H M H S --- STSFTR vlnt KLT S L 184
Cdd:pfam00223 90 Q EI LN aftdvgagfp GVQI TSG L F QW W RTI G M T TNG QL YAG A IGL LI LA AL MLFAGWL H Y H K fap KLEWFK ---- NAE S M 165
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 185 ST HHL V GL L GLGSLAW A GHLIH ISL P VNI LL N AGVA --- V P S PH SL L SSKAVATIVEQLS ------ F SA ----------- 244
Cdd:pfam00223 166 LN HHL A GL F GLGSLAW T GHLIH VAI P ESR LL D AGVA aad I P L PH PF L NPDLMGQLYPSFA aglgpf F TG nwgayadiltf 245
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 245 --- L TSSD G YV W qp L VYS A M HH F A L A LVL I V ----------- G SVLGPLST A SNPLMS F ---------- T VGS SWH LV LG 300
Cdd:pfam00223 246 kgg L HPQT G SL W -- L TDI A H HH L A I A VLF I I aghmyrtnfgi G HSMKEILE A HKGPGG F tgeghkglye T LNN SWH AQ LG 323
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 301 VQ L FVT G TASVLY A QMSN A Y P V YPY LL TD HP T VVS LF V HH M WIGGF FL VGAFAH LS I GL VRD TL P QS ----- FSV VL TQ R 375
Cdd:pfam00223 324 LN L AML G SVTIIV A HHMY A L P P YPY IA TD YT T QAA LF T HH Q WIGGF LM VGAFAH GA I FM VRD YD P EV nknnv LDR VL EH R 403
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 376 D I I LG HL T WV VA FLG V H S FGLYVHNDTM Q A L GRP D DMFSD N AI S L L PVFA R W ------------ ST L TLNSTGS A ----- 438
Cdd:pfam00223 404 D A I IS HL S WV CL FLG F H T FGLYVHNDTM R A F GRP E DMFSD T AI L L E PVFA Q W iqaahgkalygf NL L ASAPGST A pnaga 483
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 439 ----------------- VS VLGVE L S TADF M V T HI H AF T IH T TVLIL V KG F L Y ARSSRL VN DK YK L D FR Y PCDGPGRGGT 501
Cdd:pfam00223 484 gvsdvwlpgdavnvggk VS LFPIP L G TADF L V H HI I AF G IH V TVLIL L KG V L D ARSSRL MP DK KD L G FR F PCDGPGRGGT 563
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 502 CQIS P WDHVFLGLFWMYN S IS V VIF H F F W EY QS NLA sikasag G SIRALASD F ELN SI NT NGWLR N FLW SGAA QVI Q SYG 581
Cdd:pfam00223 564 CQIS A WDHVFLGLFWMYN T IS W VIF Y F H W KM QS DVW ------- G GNVITGGQ F AQS SI YI NGWLR D FLW AQSS QVI N SYG 636
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 582 SP L AA YGL T FL AS HFVWA L SLMFLFSGRGYWQELIES VL WAH H KL YVV P H IQPRALSI TS GRAVG LT H Y LLGGI G TTW S F 661
Cdd:pfam00223 637 NS L SV YGL M FL GG HFVWA F SLMFLFSGRGYWQELIES IV WAH N KL KLA P L IQPRALSI VQ GRAVG VA H F LLGGI V TTW A F 716
...
gi 17380216 662 F L A 664
Cdd:pfam00223 717 F I A 719
Name
Accession
Description
Interval
E-value
psaA
CHL00056 photosystem I P700 chlorophyll a apoprotein A1
44-668
0e+00
photosystem I P700 chlorophyll a apoprotein A1
Pssm-ID: 176996
Cd Length: 750
Bit Score: 699.57
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 44 TTT A IWNLHADAHDF - S NS S Y L --- S KQ VF A A NLAHIGVV F I WLSGM H FHGA Y FSNY LD WL Q DP - S I A P T AQ Q V SN I AN Q 118
Cdd:CHL00056 42 TTT W IWNLHADAHDF d S HT S D L eei S RK VF S A HFGQLSII F L WLSGM Y FHGA R FSNY EA WL S DP t H I K P S AQ V V WP I VG Q 121
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 119 SV LN P -------- I RV TSGFF NL W L A E GITS TY QL KVI A AFG L IAS AL CFLGSY FH M H SSTS ---- F TR V lntkl T S LST 186
Cdd:CHL00056 122 EI LN G dvgggfrg I QI TSGFF QI W R A S GITS EL QL YCT A IGA L VFA AL MLFAGW FH Y H KAAP klaw F QD V ----- E S MLN 196
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 187 HHL V GLLGLGSL A WAGH L IH I SLP V N I LL N AGV A --- V P S PH SLLSSKA vat IVE QL -- SF S ------------------ 243
Cdd:CHL00056 197 HHL A GLLGLGSL S WAGH Q IH V SLP I N Q LL D AGV D pke I P L PH EFILNRD --- LLA QL yp SF A kgltpfftlnwseysdfl 273
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 244 ---- A L TSSD G YV W qp L VYS A M HH F A L A LVLIVGSVL ------------------- GP LSTASNPLMSFTVGS SWH LV L G 300
Cdd:CHL00056 274 tfrg G L NPVT G GL W -- L TDI A H HH L A I A VLFLIAGHM yrtnwgighslkeileahk GP FTGEGHKGLYEILTT SWH AQ L A 351
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 301 VQ L FVT G TASVLY A QMSNAY P V YPYL L TD HP T VV SLF V HHMWIGGF FL VGA F AH LS I GL VRD TL P QS ----- FSV VL TQ R 375
Cdd:CHL00056 352 LN L AML G SLTIIV A HHMYSM P P YPYL A TD YG T QL SLF T HHMWIGGF LI VGA A AH AA I FM VRD YD P TT rynnl LDR VL RH R 431
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 376 D I I LG HL T WV VA FLG V HSFGLY V HNDTM Q ALGRP D DMFSD N AI S L L P V FA R W ---- ST L TLNS T ---------------- 435
Cdd:CHL00056 432 D A I IS HL N WV CI FLG F HSFGLY I HNDTM S ALGRP Q DMFSD T AI Q L Q P I FA Q W iqnt HA L APGA T apgatastsltwgggd 511
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 436 ---- G SA V SV L GVE L S TADF M V T HIHAFTIH T TVLIL V KG F L Y ARSSRL VN DK YK L D FR Y PCDGPGRGGTCQ I S P WDHVF 511
Cdd:CHL00056 512 lvav G GK V AL L PIP L G TADF L V H HIHAFTIH V TVLIL L KG V L F ARSSRL IP DK AN L G FR F PCDGPGRGGTCQ V S A WDHVF 591
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 512 LGLFWMYNSISVVIFHF F W EY QS NLASIKASA G GSIRALASD F ELN SI NT NGWLR N FLW SG A A QVIQSYGS P L A AYGL T F 591
Cdd:CHL00056 592 LGLFWMYNSISVVIFHF S W KM QS DVWGSISDQ G VVTHITGGN F AQS SI TI NGWLR D FLW AQ A S QVIQSYGS S L S AYGL F F 671
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 17380216 592 L AS HFVWA L SLMFLFSGRGYWQELIES VL WAH H KL Y V V P H IQPRALSI TS GRAVG LT HYLLGGI G TTW S FFLARI V A 668
Cdd:CHL00056 672 L GA HFVWA F SLMFLFSGRGYWQELIES IV WAH N KL K V A P A IQPRALSI VQ GRAVG VA HYLLGGI A TTW A FFLARI I A 748
PsaA
COG5701 Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem ...
43-668
0e+00
Photosystem I reaction center subunit A1, PsaA [Energy production and conversion]; Photosystem I reaction center subunit A1, PsaA is part of the Pathway/BioSystem: Photosystem I
Pssm-ID: 444411
Cd Length: 755
Bit Score: 686.19
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 43 Q TTT A IWNLHA D AHDF ---- S NSSYL S KQV F A A NLA H IG VVFIWLSGM H FHGA Y FSNY LD WL Q DP S - IA P T AQ Q V SN I AN 117
Cdd:COG5701 43 K TTT W IWNLHA L AHDF dtht S DLEEI S RKI F S A HFG H LA VVFIWLSGM F FHGA R FSNY TA WL A DP T g VK P S AQ V V WP I VG 122
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 118 Q SV LN P -------- I RV TSG F F NL W L A E GIT STY QL KVI A AFG L IAS AL CFLGSY FH M H SSTSFTRVLN t KLT S LST HHL 189
Cdd:COG5701 123 Q EI LN A dvgggfhg I QI TSG L F QM W R A W GIT NEF QL YCT A IGA L VMA AL MLFAGW FH Y H KRAPKLEWFQ - NVE S MLN HHL 201
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 190 V GLLGLGSLAW A GHLIH I SLPVN I LL N AGVA --- V P S PH SL L SSKAV A TI ------------------- VEQ L S F SA - L T 246
Cdd:COG5701 202 A GLLGLGSLAW T GHLIH V SLPVN A LL D AGVA aad I P L PH EF L NPSLM A QL ypgfasgvgpfftlnwgaf SDF L T F KG g L N 281
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 247 SSD G YV W qp L VYS A M HH F A L A LVL I VG ------------ S VLGP L STASN P LMS FT ----------- VGS SWH LV L GVQ L 303
Cdd:COG5701 282 PVT G GL W -- L TDI A H HH L A I A VLF I IA ghmyrtnwgigh S MKEI L EAHKG P PLL FT gpeghkglyev LTT SWH AQ L AIN L 359
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 304 FVT G TA S VLY A QMSN A Y P V YPYL L TD H PT VV SLF V HHMWIGGF FL VGA F AH LS I GL VRD TL P QS ----- FSV VL TQ RD I I 378
Cdd:COG5701 360 AMM G SL S IIV A HHMY A M P P YPYL A TD Y PT QL SLF T HHMWIGGF LI VGA A AH AA I FM VRD YD P AV nqnnv LDR VL RH RD A I 439
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 379 LG HL T WV VA FLG V HSFGLY V HNDTM Q ALGRP D DMFSD N AI S L L PVFA R W ------------------ S T LTLNST G SA V S 440
Cdd:COG5701 440 IS HL N WV CI FLG F HSFGLY I HNDTM R ALGRP Q DMFSD T AI Q L Q PVFA Q W iqnlhasapgtatapnag G T VSEAFG G DV V A 519
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 441 V L G ------ VE L S TADFM VT HIHAFTIH T TVLIL V KG F L Y ARSSRL VN DK YK L D FR Y PCDGPGRGGTCQ I S P WDHVFLGL 514
Cdd:COG5701 520 V G G kvammp IP L G TADFM IH HIHAFTIH V TVLIL L KG V L F ARSSRL IP DK AN L G FR F PCDGPGRGGTCQ V S A WDHVFLGL 599
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 515 FWMYNS I SVVIFHF F W EY QS NLASIKASA G GSIRALASD F ELN SI NT NGWLR N FLW SGAA QVI Q SYGS P L A AYGL T FL AS 594
Cdd:COG5701 600 FWMYNS L SVVIFHF S W KM QS DVWGTVNAD G SVNHITGGN F AQS SI TI NGWLR D FLW AQSS QVI N SYGS A L S AYGL M FL GA 679
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 17380216 595 HFVWA L SLMFLFSGRGYWQELIES VL WAH H KL Y V V P H IQPRALSIT S GRAVG LT HYLLGGI G TTW S FFLAR IV A 668
Cdd:COG5701 680 HFVWA F SLMFLFSGRGYWQELIES IV WAH N KL K V A P A IQPRALSIT Q GRAVG VA HYLLGGI A TTW A FFLAR LI A 753
psaA
TIGR01335 photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, ...
43-668
0e+00
photosystem I core protein PsaA; The core proteins of photosystem I are PsaA and PsaB, homologous integral membrane proteins that form a heterodimer. The heterodimer binds the electron-donating chlorophyll dimer P700, as well as chlorophyll, phylloquinone, and 4FE-4S electron acceptors. This model describes PsaA only. [Energy metabolism, Photosynthesis]
Pssm-ID: 130402 [Multi-domain]
Cd Length: 752
Bit Score: 656.26
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 43 Q TTT A IWNLHADAHDF ---- S NSSYL S KQV F A A NLAHIG V V FIWLSGM H FHGA Y FSNY LD WL Q DP S - I A P T AQ Q V SN I AN 117
Cdd:TIGR01335 44 K TTT W IWNLHADAHDF dsht S DLEDI S RKI F S A HFGQLS V I FIWLSGM Y FHGA R FSNY EA WL S DP T h I K P S AQ V V WP I VG 123
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 118 Q SV LN P -------- I RV TSGFF N LW L A E GIT STY QL K V I A AF GL IASA L CFLGSY FH M H SSTSFTRVLNT k LT S LST HHL 189
Cdd:TIGR01335 124 Q EI LN G dvgggfhg I QI TSGFF Q LW R A S GIT NEL QL Y V T A IG GL VMAG L MLFAGW FH Y H KAAPKLEWFQN - VE S MLN HHL 202
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 190 V GLLGLGSL A WAGH L IH I SLP V N I LL N AGV A --- V P S PH SLLSSKAVATIV -------------------- EQ L S F SA - L 245
Cdd:TIGR01335 203 A GLLGLGSL S WAGH Q IH V SLP I N K LL D AGV D pkd I P L PH EFILNRELMAQL ypsfasgltpfftlnwgays DF L T F RG g L 282
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 246 TSSD G YV W qp L VYS A M HH F A L A LVL I VGSVL ------------------- GP LSTASNPLMSFTVGS SWH LV L GVQ L FVT 306
Cdd:TIGR01335 283 NPVT G GL W -- L SDI A H HH L A I A VLF I IAGHM yrtnwgighsikeileahk GP FTGSGHKGLYEALTT SWH AQ L AIN L AML 360
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 307 G TA S VLY A QMSN A Y P V YPYL L TD H PT VV SLF V HHMWIGGF FL VGA F AH LS I GL VRD TL P QS ----- FSV V LTQ RD I I LG H 381
Cdd:TIGR01335 361 G SL S IIV A HHMY A M P P YPYL A TD Y PT QL SLF T HHMWIGGF LI VGA A AH GA I FM VRD YD P SQ nynnv LDR V IRH RD A I IS H 440
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 382 L T WV VA FLG V HSFGLY V HNDTM Q ALGRP D DMFSD N AI S L L PVFA R W ---- S TL TLNS T ------------------- G SA 438
Cdd:TIGR01335 441 L N WV CI FLG F HSFGLY I HNDTM R ALGRP Q DMFSD T AI Q L Q PVFA Q W iqnl H TL APGN T apnalattsyafggevvav G GK 520
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 439 V SVLGVE L S TADFMV T HIHAFTIH T TVLIL V KG F L Y AR S SRL VN DK YK L D FR Y PCDGPGRGGTCQ I S P WDHVFLGLFWMY 518
Cdd:TIGR01335 521 V AMMPIK L G TADFMV H HIHAFTIH V TVLIL L KG V L F AR N SRL IP DK AN L G FR F PCDGPGRGGTCQ V S G WDHVFLGLFWMY 600
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 519 N S ISVVIFHF F W EY QS NLASIKASA G GSIRALASD F ELNS I NT NGWLR N FLW SG A A QVIQSYGS P L A AYGL T FL AS HF V W 598
Cdd:TIGR01335 601 N C ISVVIFHF S W KM QS DVWGTVSQN G LVSHITGGN F AQSA I TI NGWLR D FLW AQ A S QVIQSYGS S L S AYGL M FL GA HF I W 680
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 599 A L SLMFLFSGRGYWQELIES VL WAH H KL Y V V P H IQPRALSI TS GRAVG LT HYLLGGI G TTW S FFLARI VA 668
Cdd:TIGR01335 681 A F SLMFLFSGRGYWQELIES IV WAH N KL K V A P A IQPRALSI IQ GRAVG VA HYLLGGI A TTW A FFLARI IS 750
PsaA_PsaB
pfam00223 Photosystem I psaA/psaB protein;
43-664
0e+00
Photosystem I psaA/psaB protein;
Pssm-ID: 459719
Cd Length: 719
Bit Score: 624.88
E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 43 Q TT TA IWNLHA D AHDF ---- SNSSY LS KQV F A A NLA H IGVV F I WLSG MH FHGA Y FSN YLD WL Q DP - SIA P T A QQ V SNIAN 117
Cdd:pfam00223 10 K TT RW IWNLHA T AHDF eshd GDTEE LS RKI F S A HFG H LAII F L WLSG NL FHGA W FSN FEA WL A DP l HVK P I A HV V WPHFG 89
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 118 Q SV LN ---------- PIRV TSG F F NL W LAE G I T STY QL KVI A AFG LI AS AL CFLGSYF H M H S --- STSFTR vlnt KLT S L 184
Cdd:pfam00223 90 Q EI LN aftdvgagfp GVQI TSG L F QW W RTI G M T TNG QL YAG A IGL LI LA AL MLFAGWL H Y H K fap KLEWFK ---- NAE S M 165
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 185 ST HHL V GL L GLGSLAW A GHLIH ISL P VNI LL N AGVA --- V P S PH SL L SSKAVATIVEQLS ------ F SA ----------- 244
Cdd:pfam00223 166 LN HHL A GL F GLGSLAW T GHLIH VAI P ESR LL D AGVA aad I P L PH PF L NPDLMGQLYPSFA aglgpf F TG nwgayadiltf 245
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 245 --- L TSSD G YV W qp L VYS A M HH F A L A LVL I V ----------- G SVLGPLST A SNPLMS F ---------- T VGS SWH LV LG 300
Cdd:pfam00223 246 kgg L HPQT G SL W -- L TDI A H HH L A I A VLF I I aghmyrtnfgi G HSMKEILE A HKGPGG F tgeghkglye T LNN SWH AQ LG 323
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 301 VQ L FVT G TASVLY A QMSN A Y P V YPY LL TD HP T VVS LF V HH M WIGGF FL VGAFAH LS I GL VRD TL P QS ----- FSV VL TQ R 375
Cdd:pfam00223 324 LN L AML G SVTIIV A HHMY A L P P YPY IA TD YT T QAA LF T HH Q WIGGF LM VGAFAH GA I FM VRD YD P EV nknnv LDR VL EH R 403
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 376 D I I LG HL T WV VA FLG V H S FGLYVHNDTM Q A L GRP D DMFSD N AI S L L PVFA R W ------------ ST L TLNSTGS A ----- 438
Cdd:pfam00223 404 D A I IS HL S WV CL FLG F H T FGLYVHNDTM R A F GRP E DMFSD T AI L L E PVFA Q W iqaahgkalygf NL L ASAPGST A pnaga 483
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 439 ----------------- VS VLGVE L S TADF M V T HI H AF T IH T TVLIL V KG F L Y ARSSRL VN DK YK L D FR Y PCDGPGRGGT 501
Cdd:pfam00223 484 gvsdvwlpgdavnvggk VS LFPIP L G TADF L V H HI I AF G IH V TVLIL L KG V L D ARSSRL MP DK KD L G FR F PCDGPGRGGT 563
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 502 CQIS P WDHVFLGLFWMYN S IS V VIF H F F W EY QS NLA sikasag G SIRALASD F ELN SI NT NGWLR N FLW SGAA QVI Q SYG 581
Cdd:pfam00223 564 CQIS A WDHVFLGLFWMYN T IS W VIF Y F H W KM QS DVW ------- G GNVITGGQ F AQS SI YI NGWLR D FLW AQSS QVI N SYG 636
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 582 SP L AA YGL T FL AS HFVWA L SLMFLFSGRGYWQELIES VL WAH H KL YVV P H IQPRALSI TS GRAVG LT H Y LLGGI G TTW S F 661
Cdd:pfam00223 637 NS L SV YGL M FL GG HFVWA F SLMFLFSGRGYWQELIES IV WAH N KL KLA P L IQPRALSI VQ GRAVG VA H F LLGGI V TTW A F 716
...
gi 17380216 662 F L A 664
Cdd:pfam00223 717 F I A 719
PsaB
COG5702 Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem ...
40-664
1.25e-100
Photosystem I reaction center subunit A2, PsaB [Energy production and conversion]; Photosystem I reaction center subunit A2, PsaB is part of the Pathway/BioSystem: Photosystem I
Pssm-ID: 444412
Cd Length: 741
Bit Score: 324.14
E-value: 1.25e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 40 A ASQ TT TA IW NLH A D AHDF SN ----- SSY L SKQV FA ANLA H IGVV F I W L SG MH FH G A YFS N YLD W L QDP - SIA P T A QQ -- 111
Cdd:COG5702 13 A QDP TT RR IW YGI A T AHDF ES hdgmt EEN L YQKI FA THFG H LAII F L W S SG NL FH V A WQG N FEQ W I QDP l NVR P I A HA iw 92
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 112 -------- VSNIANQSVL NP IRVT - SG FFNL W LAE G ITSTYQ L KVIAA F G L IAS A LCFLGSYF H MHSSTSFTRVLNTKLT 182
Cdd:COG5702 93 dphfgkpa IEAFTQAGAS NP VNIC y SG LYHW W YTI G MRTNTD L YQGSI F L L LLA A VMLFAGWL H LQPKFRPSLAWFKNAE 172
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 183 S LST HHL V GL L G LG SLAW A GHL I H ISL P V --------- N I L L -------------- N A GV AVPS P ---- H SLLS S KAVA T 235
Cdd:COG5702 173 S RLN HHL A GL F G VS SLAW T GHL V H VAI P E srgqhvgwd N F L S tlphpaglapfftg N W GV YAQN P dtag H AFGT S QGAG T 252
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 236 IV eq L S F - SALTSSDGYV W qp L VYS A M HH F A L A LVL I VG ------------ S VLGP L STASN P LM S F ------------- 289
Cdd:COG5702 253 AI -- L T F l GGFHPQTESL W -- L TDI A H HH L A I A VIF I IA ghmyrtnfgigh S IKEI L EAHQG P GR S G ffktglghkglyd 328
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 290 T VGS S W H LV LG VQ L FVT G TASV L Y AQ MSN A Y P V Y PYLLT D HP T VVS L FV HH MW I G GF FLV GAFAH LS I GL VRD TL P QS -- 367
Cdd:COG5702 329 T INN S L H FQ LG LA L ACL G VITS L V AQ HMY A L P P Y AFIAQ D YT T QAA L YT HH QY I A GF LMI GAFAH GA I FF VRD YD P EA nk 408
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 368 --- FSVV L TQRDI I LG HL T WV VA FLG V H SF GLYVHND TMQ A L G R P DDM fsdna I SLL PVFA RW ------------ S TL TL 432
Cdd:COG5702 409 dnv LARM L EHKEA I IS HL S WV SL FLG F H TL GLYVHND VVV A F G T P EKQ ----- I LIE PVFA QF iqaahgkvlygi D TL LS 483
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 433 N STGS A ---------------------- VSV L GVELSTA DF M V T H IH A FTI HTT V LILVKG F L Y AR S S R L VN DK YKLDFR 490
Cdd:COG5702 484 N PDSV A stawpnygnvwlpgwleavnng ANS L FLTIGPG DF L V H H AI A LGL HTT T LILVKG A L D AR G S K L MP DK KDFGYA 563
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 491 Y PCDGPGRGGTC Q IS P WD HVF L GL FWM Y N S I SV V I F HFF W E ---- YQS N L A S ikasaggsiralasd F ELN S INTN GW L R 566
Cdd:COG5702 564 F PCDGPGRGGTC D IS A WD SFY L AT FWM L N T I GW V T F YWH W K hlsi WSG N V A Q --------------- F NES S TYLM GW F R 628
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 567 NF LW SGA AQ V I QS Y G ---- SP L AAYGLT FL AS H F VWA LSL MFL F S G RGYWQELIE SVL WAH HKL ---- Y V VPHIQ P R ALS 638
Cdd:COG5702 629 DY LW ANS AQ L I NG Y S pfgt NS L SVWAWM FL FG H L VWA TGF MFL I S W RGYWQELIE TLV WAH ERT plan L V RWKDK P V ALS 708
730 740
....*....|....*....|....*.
gi 17380216 639 I TSG R A VGLTH YLL G G I G T TWS F FL A 664
Cdd:COG5702 709 I VQA R L VGLTH FTV G Y I V T YAA F LI A 734
psaB
CHL00054 photosystem I P700 chlorophyll a apoprotein A2
40-664
8.93e-99
photosystem I P700 chlorophyll a apoprotein A2
Pssm-ID: 176995
Cd Length: 734
Bit Score: 318.97
E-value: 8.93e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 40 A ASQ TT TA IW NLH A D AHDF SN ----- SSY L SKQV FA ANLAHIGVV F I W L SG MH FH G A YFS N YLD W L QDP - SIA P T A QQ -- 111
Cdd:CHL00054 13 A QDP TT RR IW FGI A T AHDF ES hddit EER L YQKI FA SHFGQLAII F L W T SG NL FH V A WQG N FEA W V QDP l HVR P I A HA iw 92
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 112 -------- V SNIANQSV L N P IRV - T SG FFNL W LAE G ITSTYQ L KVI A A F G L IA SAL CFLGSYF H MHS ---- S T S FTRVLN 178
Cdd:CHL00054 93 dphfgqpa V EAFTRGGA L G P VNI a Y SG VYQW W YTI G LRTNED L YTG A L F L L FL SAL SLIAGWL H LQP kwkp S V S WFKNAE 172
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 179 TK L T slst HHL V GL L G LG SLAW A GHL I H ISL P V --------- N I L L -------------- NAGVAVPS P ---- H SLLS S K 231
Cdd:CHL00054 173 SR L N ---- HHL S GL F G VS SLAW T GHL V H VAI P E srgehvrwn N F L D vlphpqglgplftg QWNLYAQN P dsss H LFGT S Q 248
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 232 AVA T IVEQL -- S F SAL T S S dgy V W qp L VYS A M HH F A L A L V LIVGSVL ---------------------- G P L STASNP L M 287
Cdd:CHL00054 249 GAG T AILTF lg G F HPQ T Q S --- L W -- L TDI A H HH L A I A V V FLIAGHM yrtnfgighsmkdileahippg G R L GRGHKG L Y 323
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 288 S f T VGS S W H LV LG VQ L FVT G TASV L Y AQ MSNAY P V Y PYLLT D HP T VVS L FV HH MW I G GF FLV GAFAH LS I GLV RD TL P QS 367
Cdd:CHL00054 324 D - T INN S L H FQ LG LA L ASL G VITS L V AQ HMYSL P A Y AFIAQ D FT T QAA L YT HH QY I A GF IMT GAFAH GA I FFI RD YN P EQ 402
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 368 ----- FSVV L TQRDI I LG HL T W VVA FLG V H SF GLYVHND T M Q A L G R P ddmfs DNA I SLL P V FA R W ST ----------- LT 431
Cdd:CHL00054 403 nednv LARM L DHKEA I IS HL S W ASL FLG F H TL GLYVHND V M L A F G T P ----- EKQ I LIE P I FA Q W IQ sahgktsygfd VL 477
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 432 L N ST G S AVSVL G -------------------- VELSTA DF M V T H IH A FTI HTT V LILVKG F L Y AR S S R L VN DK YKLDFRY 491
Cdd:CHL00054 478 L S ST N S PAFNA G rsiwlpgwlnainensnslf LTIGPG DF L V H H AI A LGL HTT T LILVKG A L D AR G S K L MP DK KDFGYSF 557
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 492 PCDGPGRGGTC Q IS P WD HVF L GL FWM Y N S I SV V I F HFF W E ---- Y Q S N lasikasaggsiral A S D F ELN S INTN GWLR N 567
Cdd:CHL00054 558 PCDGPGRGGTC D IS A WD AFY L AV FWM L N T I GW V T F YWH W K hitl W Q G N --------------- V S Q F NES S TYLM GWLR D 622
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 17380216 568 F LW SGAA Q V I QS Y G ---- SP L AAYGLT FL AS H F VWA LSL MFL F S G RGYWQELIE SVL WAH HKLYVVPH I Q ---- P R ALSI 639
Cdd:CHL00054 623 Y LW LNSS Q L I NG Y N pfgm NS L SVWAWM FL FG H L VWA TGF MFL I S W RGYWQELIE TLA WAH ERTPLANL I R wrdk P V ALSI 702
730 740
....*....|....*....|....*
gi 17380216 640 TSG R A VGL T H YLL G G I G T TWS F FL A 664
Cdd:CHL00054 703 VQA R L VGL A H FSV G Y I F T YAA F LI A 727
Blast search parameters
Data Source:
Precalculated data, version = cdd.v.3.21
Preset Options: Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
