NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|81552817|sp|Q9S508|]
View 

RecName: Full=Phenazine biosynthesis protein PhzB2

Protein Classification

phenazine biosynthesis protein( domain architecture ID 10505537)

phenazine biosynthesis protein is involved in the biosynthesis of the antibiotic phenazine, a nitrogen-containing heterocyclic molecule having important roles in virulence, competition and biological control

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PHZA_PHZB pfam03284
Phenazine biosynthesis protein A/B;
2-162 1.08e-117

Phenazine biosynthesis protein A/B;


:

Pssm-ID: 397400  Cd Length: 161  Bit Score: 329.16  E-value: 1.08e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81552817     2 LDNAIPQGFEDAVELRRKNRETVVKYMNTKGQDRLRRHELFVEDGCGGLWTTDTGSPIVIRGKDKLAEHAVWSLKCFPDW 81
Cdd:pfam03284   1 REYQRLKGFHDHAELRRHNRKTVEQYMHTKGEARLKRHLLFVEDGCGGLWTTDSGQPIVIRGREKLGEHAVWSLQCFPDW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81552817    82 EWYNIKVFETDDPNHFWVECDGHGKILFPGYPEGYYENHFLHSFELDDGKIKRNREFMNVFQQLRALSIPVPQIKREGIP 161
Cdd:pfam03284  81 EWTNIQIFETQDPNHFWVECDGEGKILFPGYPQGYYENHFLHSFELENGLIKRNREFMNPCQQLRALGIEVPQIKRDGIP 160


                  .
gi 81552817   162 T 162
Cdd:pfam03284 161 T 161
 
Name Accession Description Interval E-value
PHZA_PHZB pfam03284
Phenazine biosynthesis protein A/B;
2-162 1.08e-117

Phenazine biosynthesis protein A/B;


Pssm-ID: 397400  Cd Length: 161  Bit Score: 329.16  E-value: 1.08e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81552817     2 LDNAIPQGFEDAVELRRKNRETVVKYMNTKGQDRLRRHELFVEDGCGGLWTTDTGSPIVIRGKDKLAEHAVWSLKCFPDW 81
Cdd:pfam03284   1 REYQRLKGFHDHAELRRHNRKTVEQYMHTKGEARLKRHLLFVEDGCGGLWTTDSGQPIVIRGREKLGEHAVWSLQCFPDW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81552817    82 EWYNIKVFETDDPNHFWVECDGHGKILFPGYPEGYYENHFLHSFELDDGKIKRNREFMNVFQQLRALSIPVPQIKREGIP 161
Cdd:pfam03284  81 EWTNIQIFETQDPNHFWVECDGEGKILFPGYPQGYYENHFLHSFELENGLIKRNREFMNPCQQLRALGIEVPQIKRDGIP 160


                  .
gi 81552817   162 T 162
Cdd:pfam03284 161 T 161
YesE COG3631
Ketosteroid isomerase-related protein [General function prediction only];
20-149 1.92e-10

Ketosteroid isomerase-related protein [General function prediction only];


Pssm-ID: 442849  Cd Length: 126  Bit Score: 55.32  E-value: 1.92e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81552817  20 NRETVVKYMntkgqDRLRRH------ELFVEDGcggLWTtDTGSPI--VIRGKDKLAEHAVWSLKCFPDWEWYNIKVFEt 91
Cdd:COG3631   2 NRELVRRFY-----AAFNAGdvdallALLAEDV---VWE-DPGGPGagTYRGKEAVRAFFARLAAAFEDLRFEVRRVVA- 71

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 81552817  92 dDPNHFWVECDGHGKILFPGYPegyYENHFLHSFELDDGKIKRNREFMNVFQQLRALS 149
Cdd:COG3631  72 -DGDRVVVEGTVRGTVLATGKP---YENRYADVFTVRDGKIVRVREYFDTAALAAALG 125
 
Name Accession Description Interval E-value
PHZA_PHZB pfam03284
Phenazine biosynthesis protein A/B;
2-162 1.08e-117

Phenazine biosynthesis protein A/B;


Pssm-ID: 397400  Cd Length: 161  Bit Score: 329.16  E-value: 1.08e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81552817     2 LDNAIPQGFEDAVELRRKNRETVVKYMNTKGQDRLRRHELFVEDGCGGLWTTDTGSPIVIRGKDKLAEHAVWSLKCFPDW 81
Cdd:pfam03284   1 REYQRLKGFHDHAELRRHNRKTVEQYMHTKGEARLKRHLLFVEDGCGGLWTTDSGQPIVIRGREKLGEHAVWSLQCFPDW 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81552817    82 EWYNIKVFETDDPNHFWVECDGHGKILFPGYPEGYYENHFLHSFELDDGKIKRNREFMNVFQQLRALSIPVPQIKREGIP 161
Cdd:pfam03284  81 EWTNIQIFETQDPNHFWVECDGEGKILFPGYPQGYYENHFLHSFELENGLIKRNREFMNPCQQLRALGIEVPQIKRDGIP 160


                  .
gi 81552817   162 T 162
Cdd:pfam03284 161 T 161
YesE COG3631
Ketosteroid isomerase-related protein [General function prediction only];
20-149 1.92e-10

Ketosteroid isomerase-related protein [General function prediction only];


Pssm-ID: 442849  Cd Length: 126  Bit Score: 55.32  E-value: 1.92e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 81552817  20 NRETVVKYMntkgqDRLRRH------ELFVEDGcggLWTtDTGSPI--VIRGKDKLAEHAVWSLKCFPDWEWYNIKVFEt 91
Cdd:COG3631   2 NRELVRRFY-----AAFNAGdvdallALLAEDV---VWE-DPGGPGagTYRGKEAVRAFFARLAAAFEDLRFEVRRVVA- 71

                        90       100       110       120       130
                ....*....|....*....|....*....|....*....|....*....|....*...
gi 81552817  92 dDPNHFWVECDGHGKILFPGYPegyYENHFLHSFELDDGKIKRNREFMNVFQQLRALS 149
Cdd:COG3631  72 -DGDRVVVEGTVRGTVLATGKP---YENRYADVFTVRDGKIVRVREYFDTAALAAALG 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH