|
Name |
Accession |
Description |
Interval |
E-value |
| FAM184 |
pfam15665 |
Family with sequence similarity 184, A and B; The function of FAM184 is not known. |
48-234 |
4.99e-21 |
|
Family with sequence similarity 184, A and B; The function of FAM184 is not known.
Pssm-ID: 464788 [Multi-domain] Cd Length: 211 Bit Score: 92.42 E-value: 4.99e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 48 VIYALNTRQDEAEASMEALREAHQEELQNAVAETKARLLQEQGCAEEEALLQR-IQALESALELQKRLTEEALAESASCR 126
Cdd:pfam15665 1 VIYALNTKNDEHEAEIQALKEAHEEEIQQILAETREKILQYKSKIGEELDLKRrIQTLEESLEQHERMKRQALTEFEQYK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 127 LETKERELRVEAEHAERVLTLSREMLELKADYERRLQHLTSHeatpqgrlpQESPETKSEPGQGPEMQEVLLEVQRLRVE 206
Cdd:pfam15665 81 RRVEERELKAEAEHRQRVVELSREVEEAKRAFEEKLESFEQL---------QAQFEQEKRKALEELRAKHRQEIQELLTT 151
|
170 180
....*....|....*....|....*...
gi 296439355 207 NQQLSKDYARKAEELQATYERENEAIRQ 234
Cdd:pfam15665 152 QRAQSASSLAEQEKLEELHKAELESLRK 179
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
94-927 |
1.19e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.41 E-value: 1.19e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 94 EEALLQriqaLESALELQKRLtEEALAEsascrLETKERELRVEAEHAERVLTLSREMLELKADYErrLQHLTSHEATPQ 173
Cdd:TIGR02168 175 KETERK----LERTRENLDRL-EDILNE-----LERQLKSLERQAEKAERYKELKAELRELELALL--VLRLEELREELE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 174 GRLPQESPETKSEPGQGPEMQEVLLEVQRLRVENQQLSKDYARKAEELQATYERENEAIRQAMQQSVSqalwqwqekesd 253
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER------------ 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 254 lRKNFQVQESALQAQVRKLEGDLEHRGRKISDLKKYAQKLKERIQDLDVQLKEARQENSELKGTAKKLGEKL-----AVA 328
Cdd:TIGR02168 311 -LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLetlrsKVA 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 329 KDRMMLQECRGTQQT-DAMKTELVSENKVLREENDLEAGNLHPQQDQSCLKECPCMKGGTDMQTKKEASAETEYMKQQYE 407
Cdd:TIGR02168 390 QLELQIASLNNEIERlEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 408 EDLRKIKHQTEEEKKHLKDQLVKRLEDLVKKHTVEIKSVRSSV-EAERKKLQREVEAQLEEVRKKSEKEI---------- 476
Cdd:TIGR02168 470 LEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLkNQSGLSGILGVLSELISVDEGYEAAIeaalggrlqa 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 477 ---KQLEEEKAALNVKLQNSLLEVLRLEE-FIQQNKTRPTGAEESPQELG-RQHCSILETQDPCLKLD-----------E 540
Cdd:TIGR02168 550 vvvENLNAAKKAIAFLKQNELGRVTFLPLdSIKGTEIQGNDREILKNIEGfLGVAKDLVKFDPKLRKAlsyllggvlvvD 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 541 TSPRGEEYQDKLAAEEGTSSDEEE--RTKVLLKEGSDPQpplGSLLKEKTSKIQRLEEdwqsQKAKLQAQVSQMQQALEQ 618
Cdd:TIGR02168 630 DLDNALELAKKLRPGYRIVTLDGDlvRPGGVITGGSAKT---NSSILERRREIEELEE----KIEELEEKIAELEKALAE 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 619 ctsnYREDLQALKQlsdlEREKLQRELQETTQQNHAMKAQLEASHQRALRMLEKARHQEL-------KATEERLKKESSH 691
Cdd:TIGR02168 703 ----LRKELEELEE----ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKelteleaEIEELEERLEEAE 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 692 SLQIQHQTHRLELQALEEKARQELQEERERMQAQQAlLLESLRQELSEQQAACSGHQKDLEALQAELRALGRQQASSqcp 771
Cdd:TIGR02168 775 EELAEAEAEIEELEAQIEQLKEELKALREALDELRA-ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL--- 850
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 772 gdSKDHIIATEERGgpgqagsppgaagqgsgegcGLWEENAQLQDAVRRLRAEVEQHQQEAQKLRDQRRFLEETQQA--Q 849
Cdd:TIGR02168 851 --SEDIESLAAEIE--------------------ELEELIEELESELEALLNERASLEEALALLRSELEELSEELREleS 908
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 296439355 850 RAREVETLRQEHRKEMQAMVADFSSAQAQLQARLAALEAELKDSGEKPGKGASRPEDLQLigRLQTRLKEREDIIKQL 927
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE--EARRRLKRLENKIKEL 984
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
55-720 |
2.91e-15 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 81.34 E-value: 2.91e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 55 RQDEAEASMEALREAHQ-EELQNAVAETKARLLQEQGCAEEEALLQRIQALESA--LELQKRLTEEALAESASCRLETKE 131
Cdd:PTZ00121 1110 KAEEARKAEEAKKKAEDaRKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDArkAEEARKAEDAKKAEAARKAEEVRK 1189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 132 RELRVEAEHAERVLTLSRemlelkADYERRLQHLTSHEATPQGRLPQESPETKSEPGQGPEMQEVLLEVQRLRVENQQLS 211
Cdd:PTZ00121 1190 AEELRKAEDARKAEAARK------AEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMA 1263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 212 KdYARKAEELQATYERENEAIRQAMQQSVSQALWQWQEKesdlRKNFQVQESALQAqvrklegdlehrgRKISDLKKYAQ 291
Cdd:PTZ00121 1264 H-FARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEK----KKADEAKKKAEEA-------------KKADEAKKKAE 1325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 292 KLKERIQDLDVQLKEARQENSELKGTAKKLGEKLAVAKDRMMLQECRGTQ---QTDAMKTEL-----VSENKVLREENDL 363
Cdd:PTZ00121 1326 EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEakkKADAAKKKAeekkkADEAKKKAEEDKK 1405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 364 EAGNLHPQQD-----QSCLKECPCMKGGTDMQTKKEASAETEYMKQQYEEDLRKIKHQTEEEKKHLKDQLVKRLEDLVKK 438
Cdd:PTZ00121 1406 KADELKKAAAakkkaDEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKA 1485
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 439 HTVEIKSVRSSVEAERKKLQREVEAQLEEVRKKSEK----------EIKQLEEEKAALNVKLQNSLLEVLRLEEFIQQNK 508
Cdd:PTZ00121 1486 DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAkkadeakkaeEAKKADEAKKAEEKKKADELKKAEELKKAEEKKK 1565
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 509 TRPTGAEESPQELGRQHCSILETQDPclKLDETSPRGEEYQDKLAAEEGTSSDEEERTKVLLKEGSDPQPPLGSLLKE-- 586
Cdd:PTZ00121 1566 AEEAKKAEEDKNMALRKAEEAKKAEE--ARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKea 1643
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 587 ----KTSKIQRLEEDWQSQKAKLQAQVSQMQQALEQCTSNYREDLQALKQLSDLEREK-----LQRELQETTQQNHAMKA 657
Cdd:PTZ00121 1644 eekkKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAkkaeeLKKKEAEEKKKAEELKK 1723
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 296439355 658 QLEASHQRALRMLEKARHQELKAteERLKKESSHSLQIQHQTHRLELQALEEKARQELQEERE 720
Cdd:PTZ00121 1724 AEEENKIKAEEAKKEAEEDKKKA--EEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEE 1784
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
457-932 |
1.03e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.20 E-value: 1.03e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 457 LQREVEAQLEEVRKKSEK---------EIKQLEEEKAALNVKLQNSLLEvlRLEEFIQQNKTRPTGAEESPQELGRQhcs 527
Cdd:COG1196 194 ILGELERQLEPLERQAEKaeryrelkeELKELEAELLLLKLRELEAELE--ELEAELEELEAELEELEAELAELEAE--- 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 528 iLETQDpcLKLDETSPRGEEYQDKLAAEEGTSSDEEERTKVLLKEgsdpqpplgslLKEKTSKIQRLEEDWQSQKAKLQA 607
Cdd:COG1196 269 -LEELR--LELEELELELEEAQAEEYELLAELARLEQDIARLEER-----------RRELEERLEELEEELAELEEELEE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 608 QVSQMQQALEQctsnyREDLQALKQLSDLEREKLQRELQETTQQNHAMKAQLEASHQRALRMLEKARHQELKATEERLKK 687
Cdd:COG1196 335 LEEELEELEEE-----LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAE 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 688 ESSHSLQIQHQTHRLELQALEEKARQELQEERERMQAQQALLLESLRQELSEQQAacsghQKDLEALQAELRALGRQQAS 767
Cdd:COG1196 410 EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL-----LAELLEEAALLEAALAELLE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 768 SQCPGDSKDHIIATEERGGPGQAGSppGAAGQGSGEGCGLWEENAQLQDAVRRLRAEVEqhqqEAQKLRDQRRFLEETQQ 847
Cdd:COG1196 485 ELAEAAARLLLLLEAEADYEGFLEG--VKAALLLAGLRGLAGAVAVLIGVEAAYEAALE----AALAAALQNIVVEDDEV 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 848 AQRAREVETLRQEHRKEMQAM--VADFSSAQAQLQARLAALEAELKDSGEKPGKGASRPEDLQLIGR--LQTRLKEREDI 923
Cdd:COG1196 559 AAAAIEYLKAAKAGRATFLPLdkIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRtlVAARLEAALRR 638
|
....*....
gi 296439355 924 IKQLTEERR 932
Cdd:COG1196 639 AVTLAGRLR 647
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
192-762 |
3.40e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 3.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 192 EMQEVLLEVQRLRVENQQLSKDYARKAEELQATYERENEAIRQAMQQSVSQALWQwQEKESDLRKNFQVQESALQAQVRK 271
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE-LEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 272 LEGDLEHRGRKISDLKKYAQKLKERIQDLDVQLKEARQENSELKGTAKKLGEKLAVAKDRMmlqecrgTQQTDAMKTELV 351
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL-------AEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 352 SENKVLREENDLEAGNLHPQQDQSclkecpcmkggtdmqtkKEASAETEYMKQQYEEDLRKIKHQTEEEKKHLKDQLVKR 431
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAA-----------------ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 432 LEDLVKKHTVEIKSVRSSVEAERKKLQREVEAQLEEVRKKSEKEIKQLEEEKAALNVKLqnSLLEVLRLEEFIQQNKTRP 511
Cdd:COG1196 436 EEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL--LLLEAEADYEGFLEGVKAA 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 512 TGAEEspQELGRQHCSILETQDPCLKLDETSPRGEEYQDKLAAEEGTSSDEEERTK----------VLLKEGSDPQPPLG 581
Cdd:COG1196 514 LLLAG--LRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKaakagratflPLDKIRARAALAAA 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 582 SLLKEKTSKIQRLEEDWQSQKAKLQAQVSQMQQALEQCTSNYREDLQALKQLSDLEREKLQREL----QETTQQNHAMKA 657
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGgsagGSLTGGSRRELL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 658 QLEASHQRALRMLEKARHQELKATEERLKKESSHSLQIQHQTHRLELQALEEKARQELQEERERMQAQQALLLESLRQEL 737
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
570 580
....*....|....*....|....*....
gi 296439355 738 SEQQAAC----SGHQKDLEALQAELRALG 762
Cdd:COG1196 752 ALEELPEppdlEELERELERLEREIEALG 780
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
51-568 |
4.40e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.47 E-value: 4.40e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 51 ALNTRQDEAEASMEALREAHQEELQNAVAETKARLLQEQGCAEEEAL---LQRIQALESALELQKRLTEEALAESASCRL 127
Cdd:PTZ00121 1245 AEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKadeAKKAEEKKKADEAKKKAEEAKKADEAKKKA 1324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 128 E---TKERELRVEAEHAERVLTLSREMLELKADYERRLQHLTSHEATPQGRLPQESPETKSEPGQGPEMQEVLLEVQRLR 204
Cdd:PTZ00121 1325 EeakKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDK 1404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 205 VENQQLSKDYA--RKAEELQATYERENEAIRQAMQQSVSQALWQWQEKESDLRKNFQVQESALQAQVRKLEGDLEHRGRK 282
Cdd:PTZ00121 1405 KKADELKKAAAakKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK 1484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 283 ISDLKKYAQKLKERIQDLDVQLKEARQENSELKGTAKKLGEKLAVAKDRMMLQECRGTQQT-DAMKTELVSENKVLREEN 361
Cdd:PTZ00121 1485 ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKkKADELKKAEELKKAEEKK 1564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 362 DLEAGNLHPQQDQSCLKECPCMKggtdmqtKKEASAETEYMKQQYEEDLRKIKHQTEEEKKHLKDQLVKRLEDLVKKHTV 441
Cdd:PTZ00121 1565 KAEEAKKAEEDKNMALRKAEEAK-------KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQ 1637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 442 EIKSVRSSV--------EAERKKLQREVEAQLEEVRKKSEKEIKQLEEEKAALNVKLQNSLLEVLRLEEFIQQNKTRPTG 513
Cdd:PTZ00121 1638 LKKKEAEEKkkaeelkkAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKK 1717
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 296439355 514 AEESPQelgrqhcsilETQDPCLKLDETSPRGEEyqDKLAAEEgTSSDEEERTKV 568
Cdd:PTZ00121 1718 AEELKK----------AEEENKIKAEEAKKEAEE--DKKKAEE-AKKDEEEKKKI 1759
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
37-530 |
5.71e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 67.09 E-value: 5.71e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 37 KMCKKIAQLTKVIYALNTRQDEAEASMEALREAHQEELQNAVAETKArllqEQGCAEEEALLQRIQALESALELQKRLTE 116
Cdd:PTZ00121 1354 AAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKA----EEDKKKADELKKAAAAKKKADEAKKKAEE 1429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 117 EALAESASCRLETKER--ELRVEAEHAERVltlsrEMLELKADYERRLQHLT--SHEATPQGRLPQESPETKSEPGQGPE 192
Cdd:PTZ00121 1430 KKKADEAKKKAEEAKKadEAKKKAEEAKKA-----EEAKKKAEEAKKADEAKkkAEEAKKADEAKKKAEEAKKKADEAKK 1504
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 193 MQEVLLEVQRLRVENQQLSKDYARKAEElqatyERENEAIRQAMQQSVSQALwqwqEKESDLRKNFQVQESAlqaQVRKL 272
Cdd:PTZ00121 1505 AAEAKKKADEAKKAEEAKKADEAKKAEE-----AKKADEAKKAEEKKKADEL----KKAEELKKAEEKKKAE---EAKKA 1572
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 273 EGDLEHRGRKISDLKKYAQKLKERIQDLDVQLKEARQENSELKGTAKKLGEKLAVAKD-RMMLQECRGTQQTDAMKTELV 351
Cdd:PTZ00121 1573 EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEeKKKVEQLKKKEAEEKKKAEEL 1652
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 352 SENKvlrEENDLEAGNLHPQQDQSCLKECPCMKGGTDMQTKKEASAETEYMKQQYEEdlrkIKHQTEEEKKhlKDQLVKR 431
Cdd:PTZ00121 1653 KKAE---EENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE----LKKKEAEEKK--KAEELKK 1723
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 432 LEDLVKKHTVEIKSvrssvEAERKKLQREvEAQLEEVRKKSEKEIKQLEEEKAALNVKLQNSLLEvlrlEEFIQQNKTRP 511
Cdd:PTZ00121 1724 AEEENKIKAEEAKK-----EAEEDKKKAE-EAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE----EELDEEDEKRR 1793
|
490
....*....|....*....
gi 296439355 512 TGAEESPQELGRQHCSILE 530
Cdd:PTZ00121 1794 MEVDKKIKDIFDNFANIIE 1812
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
87-903 |
1.04e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.24 E-value: 1.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 87 QEQGCAEE--EALLQRIQALESALELQKRLTEEALAESASCRLETKERELRVEAEHAERVLTLSREMLELKADYERRLQH 164
Cdd:PTZ00121 1095 EAFGKAEEakKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAED 1174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 165 LTSHEATPQGRLPQESPETKsepgqgpEMQEVLLEVQRLRVENQQLSKDyARKAEElqatyERENEAIRQAMQQSVSQAL 244
Cdd:PTZ00121 1175 AKKAEAARKAEEVRKAEELR-------KAEDARKAEAARKAEEERKAEE-ARKAED-----AKKAEAVKKAEEAKKDAEE 1241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 245 WQWQEKESDLRKNFQVQESALQAQVRKLEGDLEHRGRKISDLKKYAQKLK--ERIQDLDVQLKEARQENSELKGTAKKLG 322
Cdd:PTZ00121 1242 AKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKadEAKKAEEKKKADEAKKKAEEAKKADEAK 1321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 323 EKLAVAKDRmmlQECRGTQQTDAMKTELVSENKVLREENDLEAGNLHPQQDQscLKECPCMKGGTDMQTKKEASAETEYM 402
Cdd:PTZ00121 1322 KKAEEAKKK---ADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAE--KKKEEAKKKADAAKKKAEEKKKADEA 1396
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 403 KQQYEEDlrkiKHQTEEEKKhlKDQLVKRLEDLVKKHTVEIKSVRSSVEAERKKLQREVEAQLEEvRKKSEKEIKQLEEE 482
Cdd:PTZ00121 1397 KKKAEED----KKKADELKK--AAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE-AKKAEEAKKKAEEA 1469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 483 KAALNVKLQnsllevlrleefiqqnktrptgAEESPqelgrqhcsiletqdpclKLDETSPRGEEYQDKlaAEEGTSSDE 562
Cdd:PTZ00121 1470 KKADEAKKK----------------------AEEAK------------------KADEAKKKAEEAKKK--ADEAKKAAE 1507
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 563 EERTKVLLKEGSDpqpplgsllKEKTSKIQRLEEDWQSQKAKLQAQVSQMQQaleqctsnyredlqaLKQLSDLEREKLQ 642
Cdd:PTZ00121 1508 AKKKADEAKKAEE---------AKKADEAKKAEEAKKADEAKKAEEKKKADE---------------LKKAEELKKAEEK 1563
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 643 RELQEttqqnhamKAQLEASHQRALRMLEKARHQELKATEERLKkesshslqiqhqthrLELQALEEKARQELQEERERM 722
Cdd:PTZ00121 1564 KKAEE--------AKKAEEDKNMALRKAEEAKKAEEARIEEVMK---------------LYEEEKKMKAEEAKKAEEAKI 1620
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 723 QAQQALLLESLRQELSEQQAACSGHQKDLEALQAElRALGRQQASSQCPGDSKDHIIATEERGGPGQAGSPPGAAGQGSG 802
Cdd:PTZ00121 1621 KAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKA-EEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE 1699
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 803 EGCGLWEENAQLQDAVRrlRAEVEQHQQEAQKLRDQRRFLEETQQAQRAREVETLRQEHRKEMQAMVADFSSAQAQLQAR 882
Cdd:PTZ00121 1700 EAKKAEELKKKEAEEKK--KAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEK 1777
|
810 820
....*....|....*....|.
gi 296439355 883 LAALEAELKDSGEKPGKGASR 903
Cdd:PTZ00121 1778 EAVIEEELDEEDEKRRMEVDK 1798
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
40-521 |
2.06e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.88 E-value: 2.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 40 KKIAQLTKVIYALNTRQDEAEASMEALREAHQEELQNAVAETKARLLQEQGCAEEEALLQRIQALESALELQKRLTEEAL 119
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 120 AESASCRLE----------TKERELRVEAEHAERVLTLSREMLELKADYERRLQHLTSHEATPQGRLPQESPETKSEPGQ 189
Cdd:COG1196 361 AEAEEALLEaeaelaeaeeELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 190 GPEMQEVLLEVQRLRVENQQLSKDYARKAEElQATYERENEAIRQAMQQSVSQALWQWQEKESDLRKNFQVQESALQAQV 269
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEE-AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 270 RKLEGDLehrGRKISDLKKYAQKLKERIQDLDVQLkeARQENSELKGTAKKLGEKLAVAKDRMMLQECRGTQQTDAMKTE 349
Cdd:COG1196 520 RGLAGAV---AVLIGVEAAYEAALEAALAAALQNI--VVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALAR 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 350 LVSENKVLREENDLEAGNLHPQQDQSCLKecpcmkgGTDMQTKKEASAETEYMKQQYEEDLRKIKHQTEEEKKHLKDQLV 429
Cdd:COG1196 595 GAIGAAVDLVASDLREADARYYVLGDTLL-------GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSR 667
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 430 KRLEDLVKKHTVEIKSVRSSVEAERKKLQREVEAQLEEVRKKSEKEIKQLEEEKAALNVKLQNSLLEVLRLEEFIQQNKT 509
Cdd:COG1196 668 RELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEEL 747
|
490
....*....|..
gi 296439355 510 RPTGAEESPQEL 521
Cdd:COG1196 748 LEEEALEELPEP 759
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
35-763 |
4.65e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 4.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 35 HVKMCKKIAQLTKVIYALNTRQDEAEASMEAlreaHQEELQNAVAEtkarllQEQGCAEEEALLQRIQALESALELQKRL 114
Cdd:TIGR02168 276 VSELEEEIEELQKELYALANEISRLEQQKQI----LRERLANLERQ------LEELEAQLEELESKLDELAEELAELEEK 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 115 TEEALAESASCRLETKERElRVEAEHAERVLTLSREMLELKADYERRLQHLTSHEAtpqgrlpqespetksepgqgpemq 194
Cdd:TIGR02168 346 LEELKEELESLEAELEELE-AELEELESRLEELEEQLETLRSKVAQLELQIASLNN------------------------ 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 195 evllEVQRLRVENQQLSKDYARKAEELQATYERENEAIRQAMQQSVSQALWQWQEKESDLRkNFQVQESALQAQVRKLEG 274
Cdd:TIGR02168 401 ----EIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELE-RLEEALEELREELEEAEQ 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 275 DLEHRGRKISDLK---KYAQKLKERIQDLDVQLKEARQENSELKGTAKKLGEKLAVAKD---------RMMLQECRGTQQ 342
Cdd:TIGR02168 476 ALDAAERELAQLQarlDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGyeaaieaalGGRLQAVVVENL 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 343 TDAMKT-ELVSENKVLRE---ENDLEAGNLHPQQDQSCLKECPCMKGGTD--MQTKKEASAETEYMKQQYE--EDLRKIK 414
Cdd:TIGR02168 556 NAAKKAiAFLKQNELGRVtflPLDSIKGTEIQGNDREILKNIEGFLGVAKdlVKFDPKLRKALSYLLGGVLvvDDLDNAL 635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 415 HQTEEEKKHLKdqLVKRLEDLVKKHTVeikSVRSSVEAERKKLQREveaqleevrkkseKEIKQLEEEKAALNVKLQNSL 494
Cdd:TIGR02168 636 ELAKKLRPGYR--IVTLDGDLVRPGGV---ITGGSAKTNSSILERR-------------REIEELEEKIEELEEKIAELE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 495 LEVLRLEEFIQQNKTRPTGAEESPQELGRQHCSILEtqdpclKLDETSPRGEEYQDKLAAEEGTSSDEEERTKVLLKEgs 574
Cdd:TIGR02168 698 KALAELRKELEELEEELEQLRKELEELSRQISALRK------DLARLEAEVEQLEERIAQLSKELTELEAEIEELEER-- 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 575 dpqpplgslLKEKTSKIQRLEEDWQsqkaKLQAQVSQMQQALEQCTSNYREdLQALKQLSDLEREKLQRELQETTQQNHA 654
Cdd:TIGR02168 770 ---------LEEAEEELAEAEAEIE----ELEAQIEQLKEELKALREALDE-LRAELTLLNEEAANLRERLESLERRIAA 835
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 655 MKAQLEASHQRALRMLEK-----ARHQELKATEERLKKESSHSLQI--QHQTHRLELQALEEKARQELQEERERMQAQQA 727
Cdd:TIGR02168 836 TERRLEDLEEQIEELSEDieslaAEIEELEELIEELESELEALLNEraSLEEALALLRSELEELSEELRELESKRSELRR 915
|
730 740 750
....*....|....*....|....*....|....*.
gi 296439355 728 LLLEsLRQELSEQQAACSGHQKDLEALQAELRALGR 763
Cdd:TIGR02168 916 ELEE-LREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
75-765 |
5.87e-09 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 60.37 E-value: 5.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 75 QNAVAETKARLLQEQGCAEEEALLQRIQALESALELQKRLTEEAlaesascrletkeRELRVEAEHAERVLTLSREMLEL 154
Cdd:TIGR00618 188 KKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHL-------------REALQQTQQSHAYLTQKREAQEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 155 KADYERRLQHLTSHEATPQGRLPQESpETKSEPGQGPEMQEVLLEVQRLRVENQQLSKDYA----RKAEELQATYERENE 230
Cdd:TIGR00618 255 QLKKQQLLKQLRARIEELRAQEAVLE-ETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTelqsKMRSRAKLLMKRAAH 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 231 AIRQAMQQSVSQALWQWQEKESDLRKNFQVQESALQAQVRKLEgDLEHRGRKISDLKKYAQKLKERIQDLDVQLKEARQE 310
Cdd:TIGR00618 334 VKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHT-LTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATI 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 311 NSELKgTAKKLGEKLAVAKDRMMLQECRGTQQTDAMKTELVSENKVLREENDLeAGNLHPQQDQSCLKECPCMKggtdmq 390
Cdd:TIGR00618 413 DTRTS-AFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQES-AQSLKEREQQLQTKEQIHLQ------ 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 391 tKKEASAETEYMKQQYEEDLRKIKHQTEEEKKHLKD--------QLVKRLEDLVKKHTVEIKSVRSSVEAERKKLQReVE 462
Cdd:TIGR00618 485 -ETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDidnpgpltRRMQRGEQTYAQLETSEEDVYHQLTSERKQRAS-LK 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 463 AQLEEVRKKSEKEIKQLEEEKAALNVKLQnsllEVLRLEEFIQQNKTRPTGAEESPQELGRQHCSILETQDPCLKLDETS 542
Cdd:TIGR00618 563 EQMQEIQQSFSILTQCDNRSKEDIPNLQN----ITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCS 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 543 PRGEEYQDKLAAEEGTSSDEEERTKVLLKEgsdpqpplgSLLKEKTSKIQRLEEDWQSQKaklqAQVSQMQQALEQCTSN 622
Cdd:TIGR00618 639 QELALKLTALHALQLTLTQERVREHALSIR---------VLPKELLASRQLALQKMQSEK----EQLTYWKEMLAQCQTL 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 623 YREDLQALKQLSdlereklqRELQETTQQNHAMKAQLEASHQRALRMLEKARHQELKATEERLKKESSHSLQIQHQTHRL 702
Cdd:TIGR00618 706 LRELETHIEEYD--------REFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTG 777
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 296439355 703 ELQALEEKARQELQEERERMQAQQALLLESLRQELSE----QQAACSGHQKDLEALQAELRALGRQQ 765
Cdd:TIGR00618 778 AELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSdediLNLQCETLVQEEEQFLSRLEEKSATL 844
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
264-892 |
1.63e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 1.63e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 264 ALQAQVRKLegDLEHRGRKISDLKKYAQKLKERIQDLDVQLKEARQENSELKGTAKKLGEKLAVAKDRMmlqecrgtqqT 343
Cdd:COG1196 217 ELKEELKEL--EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEL----------E 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 344 DAMKTELVSENKVLREENDLEAgnlhpqqdqsclkecpcmkggtDMQTKKEASAETEYMKQQYEEDLRKIKHQTEEEKkh 423
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIAR----------------------LEERRRELEERLEELEEELAELEEELEELEEELE-- 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 424 lkdqlvkRLEDLVKKHTVEIKSVRSSVEAERKKLQREVEAQLEEVRKKSEKEIKQLEEEKAALNvkLQNSLLEVLRLEEF 503
Cdd:COG1196 341 -------ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE--LAAQLEELEEAEEA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 504 IQQNKTRPTGAEESpqelgrqhcsiletqdpclkLDETSPRGEEYQDKLAAEEGTSSDEEERTKVLLKEGSDPQPPLGSL 583
Cdd:COG1196 412 LLERLERLEEELEE--------------------LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 584 LKEKTSKIQRLEEDWQSQKAKLQAQVSQMQQALEqctsnYREDLQALKQLSDLERekLQRELQETTQQNHAMKAQLEASH 663
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEG-----FLEGVKAALLLAGLRG--LAGAVAVLIGVEAAYEAALEAAL 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 664 QRALRMLEKARHQELKATEERLKKESSHSLQIqhqthrleLQALEEKARQELQEERERMQAQQALLLESLRQELSEQQAA 743
Cdd:COG1196 545 AAALQNIVVEDDEVAAAAIEYLKAAKAGRATF--------LPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYY 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 744 CSGHQKDLEALQAELRALGRQQASsqcpGDSKDHIIATEERGGPGQAGSppGAAGQGSGEGCGLWEENAQLQDAVRRLRA 823
Cdd:COG1196 617 VLGDTLLGRTLVAARLEAALRRAV----TLAGRLREVTLEGEGGSAGGS--LTGGSRRELLAALLEAEAELEELAERLAE 690
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 824 EVEQHQQEAQKLRDQRRFLEETQQAQRAREVETLRQEHRKEMQA------------MVADFSSAQAQLQARLAALEAELK 891
Cdd:COG1196 691 EELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEReelleelleeeeLLEEEALEELPEPPDLEELERELE 770
|
.
gi 296439355 892 D 892
Cdd:COG1196 771 R 771
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
52-758 |
2.73e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 58.06 E-value: 2.73e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 52 LNTRQDEAEASMEALREAHQEELQnavaeTKARLLQEQGCAEEEALLQRiQALESALELQKRLTEEALAESASCRLETKE 131
Cdd:TIGR00618 217 YHERKQVLEKELKHLREALQQTQQ-----SHAYLTQKREAQEEQLKKQQ-LLKQLRARIEELRAQEAVLEETQERINRAR 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 132 RELRVeAEHAERVLTLSREMLELKADYERRLQHLTSHEATPQGRLPQESpetkSEPGQGPEMQEVLLEVQRLRVENQQls 211
Cdd:TIGR00618 291 KAAPL-AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQS----SIEEQRRLLQTLHSQEIHIRDAHEV-- 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 212 kDYARKAEELQATYERENeAIRQAMQQSVSQALWQWQEKESDLRKNFQVQESALQAQVRKLEGDLEHRGRKISDLKKYAQ 291
Cdd:TIGR00618 364 -ATSIREISCQQHTLTQH-IHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 292 KLKERIQDldvQLKEARQENSELKGTAKKLGEKLAVAKD-RMMLQECRGTQQTDAMKTELVSENKVLREENDLEAGNLHP 370
Cdd:TIGR00618 442 LCAAAITC---TAQCEKLEKIHLQESAQSLKEREQQLQTkEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQ 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 371 QQDQSCLKECPCMKGgtdmqtkkeasaetEYMKQQYEEDLRKIKHQTEEEKKHLkdQLVKRLEDLVKKHTVEIKSVRSSV 450
Cdd:TIGR00618 519 DIDNPGPLTRRMQRG--------------EQTYAQLETSEEDVYHQLTSERKQR--ASLKEQMQEIQQSFSILTQCDNRS 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 451 EAERKKLQREVEAQLEEVRKKSEKEIKQLEEEKAAL-----NVKLQNSLLEVLRLEEFIQQNKTRPTGAEESPQELGRQH 525
Cdd:TIGR00618 583 KEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLrklqpEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVRE 662
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 526 CSILETQDPCLKLDETSPRGEEYQDKLaaeEGTSSDEEERTKVLLKEGSDPQpplgsLLKEKTSKIQRLEEDWQSQKAKL 605
Cdd:TIGR00618 663 HALSIRVLPKELLASRQLALQKMQSEK---EQLTYWKEMLAQCQTLLRELET-----HIEEYDREFNEIENASSSLGSDL 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 606 QAQVSQMQQALEQCTSNYREDLQALKQLSDLEREKLQRELQETTQQnhamkAQLEASHQRALRMLEkARHQELKATEERL 685
Cdd:TIGR00618 735 AAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAEL-----SHLAAEIQFFNRLRE-EDTHLLKTLEAEI 808
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 296439355 686 KKESSHSLQIqhqthrleLQALEEKARQELQEERERMQAQQALLLESLRQElsEQQAACSGHQKDLEALQAEL 758
Cdd:TIGR00618 809 GQEIPSDEDI--------LNLQCETLVQEEEQFLSRLEEKSATLGEITHQL--LKYEECSKQLAQLTQEQAKI 871
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
584-765 |
2.76e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.00 E-value: 2.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 584 LKEKTSKIQRLEED---WQSQKAKLQAQVSQ-MQQALEQCTSNYREDLQALKQlsdlEREKLQRELQETTQQNHAMKAQL 659
Cdd:COG4913 257 IRELAERYAAARERlaeLEYLRAALRLWFAQrRLELLEAELEELRAELARLEA----ELERLEARLDALREELDELEAQI 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 660 EASHQRALRMLEkarhQELKATEERLKKESSHSLQIQHQTHRLELQA-LEEKARQELQEERERMQAQQALLLESLRQELS 738
Cdd:COG4913 333 RGNGGDRLEQLE----REIERLERELEERERRRARLEALLAALGLPLpASAEEFAALRAEAAALLEALEEELEALEEALA 408
|
170 180
....*....|....*....|....*..
gi 296439355 739 EQQAACSGHQKDLEALQAELRALGRQQ 765
Cdd:COG4913 409 EAEAALRDLRRELRELEAEIASLERRK 435
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
281-764 |
8.22e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 56.67 E-value: 8.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 281 RKISDLKKYAQKLK-ERIQDLDVQLKEArQENSELKGTAKKLGEKLAVAKDRMMLQECRGTQQTDAMKTELVSENKVLRE 359
Cdd:pfam15921 110 QSVIDLQTKLQEMQmERDAMADIRRRES-QSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQE 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 360 EN----DLEAGNLHPQQDQSCLKECPCMKGGTDM-QTKKEASAETEYMKQQ---YEEDLRKIKHQTEEEKKHLKDQLVKR 431
Cdd:pfam15921 189 IRsilvDFEEASGKKIYEHDSMSTMHFRSLGSAIsKILRELDTEISYLKGRifpVEDQLEALKSESQNKIELLLQQHQDR 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 432 LEDLVKKHTVEIKSVR---SSVEAERKKLQREVEAQLEEVRKKSEKEIKQLEEEKAALNvKLQNSLLEVLRLEEfiqqnk 508
Cdd:pfam15921 269 IEQLISEHEVEITGLTekaSSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVS-QLRSELREAKRMYE------ 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 509 trpTGAEESPQELGRQHCSILETQDPCLKLDETSPRGEEYQDKLAAE----EGTSSDEEERTKVLLKEGSDPQPPLGSLL 584
Cdd:pfam15921 342 ---DKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADlhkrEKELSLEKEQNKRLWDRDTGNSITIDHLR 418
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 585 KE---KTSKIQRLEEDWQSQKAKLQAQVSQmQQALEQCTSNYREDLQALKQLSDLEREKLQRELQETTqqnhAMKAQLEA 661
Cdd:pfam15921 419 RElddRNMEVQRLEALLKAMKSECQGQMER-QMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELT----AKKMTLES 493
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 662 ShQRALRMLEKARHQELKATE----ERLKKESSHSLQIQhqthrlELQAL--EEKARQELQEERERMQAQQA---LLLES 732
Cdd:pfam15921 494 S-ERTVSDLTASLQEKERAIEatnaEITKLRSRVDLKLQ------ELQHLknEGDHLRNVQTECEALKLQMAekdKVIEI 566
|
490 500 510
....*....|....*....|....*....|..
gi 296439355 733 LRQELSEQQAACSGHQKDLEALQAELRALGRQ 764
Cdd:pfam15921 567 LRQQIENMTQLVGQHGRTAGAMQVEKAQLEKE 598
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
51-735 |
1.80e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 1.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 51 ALNTRQDEAEAsmeALREAHQEELQNAVAETKARLLQEQgcAEEEALLQRIQALESALElQKRLTEEALAESAScRLETK 130
Cdd:COG1196 217 ELKEELKELEA---ELLLLKLRELEAELEELEAELEELE--AELEELEAELAELEAELE-ELRLELEELELELE-EAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 131 ERELRVEAEHAERVLTLSREMLElkaDYERRLQHLTSHEAtpqgrlpqespetksepgqgpEMQEVLLEVQRLRVENQQL 210
Cdd:COG1196 290 EYELLAELARLEQDIARLEERRR---ELEERLEELEEELA---------------------ELEEELEELEEELEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 211 SKDYARKAEELQATYERENEAIRQAMQQsvsqalwqwQEKESDLRKNFQVQESALQAQVRKLEGDLEHRGRKISDLKKYA 290
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEALLEAEAE---------LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERL 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 291 QKLKERIQDLDVQLKEARQENSELKGTAKKLGEKLAVAKDRMMLQECRGTQQTDAMKTELVSENKVLREENDLEAgnlhp 370
Cdd:COG1196 417 ERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA----- 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 371 qqdqsclkecpcmkggtdmqtKKEASAEteyMKQQYEEDLRKIKHQTEEEKKHLKDQLVKRLEDLVKKhtveiksVRSSV 450
Cdd:COG1196 492 ---------------------RLLLLLE---AEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAA-------YEAAL 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 451 EAERKKLQREVEAQLEEVRKKSEKEIKQLEEEKAAlnvklqnsllevlrleeFIQQNKTRPTGAEESPQELGRQHCSILE 530
Cdd:COG1196 541 EAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAT-----------------FLPLDKIRARAALAAALARGAIGAAVDL 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 531 TQDPCLKLDETSPRGEEY-------QDKLAAEEGTSSDEEERTKVLLKEGSDpqpplGSLLKEKTSKIQRLEEDWQSQKA 603
Cdd:COG1196 604 VASDLREADARYYVLGDTllgrtlvAARLEAALRRAVTLAGRLREVTLEGEG-----GSAGGSLTGGSRRELLAALLEAE 678
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 604 KLQAQVSQMQQALEQctsNYREDLQALKQLSDLEREKLQRELQETTQQNHAMKAQLEASHQRALRMLEKARHQELKATEE 683
Cdd:COG1196 679 AELEELAERLAEEEL---ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*...
gi 296439355 684 RLKKESSHSLQIQHQTHRLELQALEE---KARQELQEERER---MQAQQALLLESLRQ 735
Cdd:COG1196 756 LPEPPDLEELERELERLEREIEALGPvnlLAIEEYEELEERydfLSEQREDLEEARET 813
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
388-932 |
2.16e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 2.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 388 DMQTKKEASAETEYMKQQYEEDLRKIKHQTEEEKKhlKDQLVKRLEDLVKKHTV-EIKSVRSSVEAERKKLQREVEA--Q 464
Cdd:PTZ00121 1082 DAKEDNRADEATEEAFGKAEEAKKTETGKAEEARK--AEEAKKKAEDARKAEEArKAEDARKAEEARKAEDAKRVEIarK 1159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 465 LEEVRKKSE----KEIKQLEEEKAALNVKlqnSLLEVLRLEEFIQQNKTRPTGAEESPQELGRQHCSilETQDPCLKLDE 540
Cdd:PTZ00121 1160 AEDARKAEEarkaEDAKKAEAARKAEEVR---KAEELRKAEDARKAEAARKAEEERKAEEARKAEDA--KKAEAVKKAEE 1234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 541 TSPRGEEyqDKLAAEEGTSSDEEERTKVLLKEGSDPQPPLGSLLKEKTSKIQRLEEDWQSQKAKLQAQVSQMQQALEQCT 620
Cdd:PTZ00121 1235 AKKDAEE--AKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAE 1312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 621 SNYR-EDLQALKQLSDLEREKLQRELQETTQQNHAMKAQLEASHQRALRMLEKARHQELKATEERLKKES---------- 689
Cdd:PTZ00121 1313 EAKKaDEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAakkkaeekkk 1392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 690 SHSLQIQHQTHRLELQALEEKARQELQEERERMQAQQALLLESLRQELSEQQAACSGHQKDLEALQAE-LRALGRQQASS 768
Cdd:PTZ00121 1393 ADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEeAKKKAEEAKKA 1472
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 769 QCPGDSKDHIIATEERGGPGQAGSPPGAAGQGSGEGCGLWEENAQLQDAVRRLRAEVEQHQQEAQKLR--------DQRR 840
Cdd:PTZ00121 1473 DEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKkaeekkkaDELK 1552
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 841 FLEETQQAQRAREVETLRQ-EHRKEMQAMVADFS--SAQAQLQARLAALEAELKDSGEKPGKGASRPEDLQLIGRLQTRL 917
Cdd:PTZ00121 1553 KAEELKKAEEKKKAEEAKKaEEDKNMALRKAEEAkkAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEK 1632
|
570
....*....|....*
gi 296439355 918 KEREDIIKQLTEERR 932
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKK 1647
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
40-331 |
2.20e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 55.33 E-value: 2.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 40 KKIAQLTKVIYALNTRQDEAEASMEALrEAHQEELQNAVAETKARLLQEQgcAEEEALLQRIQALESALELQKRLTEEAL 119
Cdd:COG1196 239 AELEELEAELEELEAELEELEAELAEL-EAELEELRLELEELELELEEAQ--AEEYELLAELARLEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 120 AESAscRLETKERELRVE-AEHAERVLTLSREMLELKADYERRLQHLTSHEatpqgrlpqespetksepgqgpemQEVLL 198
Cdd:COG1196 316 ERLE--ELEEELAELEEElEELEEELEELEEELEEAEEELEEAEAELAEAE------------------------EALLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 199 EVQRLRVENQQLSKDYARKAEELQATYERENEAIRQAMQqsvsqalwqwQEKESDLRKNFQVQESALQAQVRKLEGDLEH 278
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEA----------EEALLERLERLEEELEELEEALAELEEEEEE 439
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 296439355 279 RGRKISDLKKYAQKLKERIQDLDVQLKEARQENSELKGTAKKLGEKLAVAKDR 331
Cdd:COG1196 440 EEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
601-931 |
3.11e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 3.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 601 QKAKLQAQVSQMQQALEqctsnYREDLQAL-KQLSDLEREKLQRELQETTQQnHAMKAQLEASHQRALRMLE------KA 673
Cdd:TIGR02168 201 QLKSLERQAEKAERYKE-----LKAELRELeLALLVLRLEELREELEELQEE-LKEAEEELEELTAELQELEekleelRL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 674 RHQELKATEERLKKE--------SSHSLQIQHQTHRLELQALEEKARQELQEERERMQAQQALLLESLRQELSEQQAACS 745
Cdd:TIGR02168 275 EVSELEEEIEELQKElyalaneiSRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 746 GHQKDLEALQAELRALgrqqassqcpgdsKDHIIATEErggpgqagsppgAAGQGSGEGCGLWEENAQLQDAVRRLRAEV 825
Cdd:TIGR02168 355 SLEAELEELEAELEEL-------------ESRLEELEE------------QLETLRSKVAQLELQIASLNNEIERLEARL 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 826 EQHQQEAQKLRDQRRFLEETQQAQRAREVETLRQEHRKEMQAMVADFSSAQAQL---QARLAALEAELKDSGEKPGKGAS 902
Cdd:TIGR02168 410 ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALeelREELEEAEQALDAAERELAQLQA 489
|
330 340
....*....|....*....|....*....
gi 296439355 903 RPEDLQligRLQTRLKEREDIIKQLTEER 931
Cdd:TIGR02168 490 RLDSLE---RLQENLEGFSEGVKALLKNQ 515
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
628-892 |
7.23e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 7.23e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 628 QALKQLSDLEreKLQREL----QETTQQNHAMKAQ---LEASHQRALRMLEKARH-QELKATEERLKKesshsLQIQHQT 699
Cdd:COG4913 201 QSFKPIGDLD--DFVREYmleePDTFEAADALVEHfddLERAHEALEDAREQIELlEPIRELAERYAA-----ARERLAE 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 700 HRLELQALE-EKARQELQEERERmqaqqallLESLRQELSEQQAACSGHQKDLEALQAELRALGRQQASSQcpGDSKDHi 778
Cdd:COG4913 274 LEYLRAALRlWFAQRRLELLEAE--------LEELRAELARLEAELERLEARLDALREELDELEAQIRGNG--GDRLEQ- 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 779 iateerggpgqagsppgaagqgsgegcgLWEENAQLQDAVRRLRAEVEQHQQEAQKLR-----DQRRFLEetQQAQRARE 853
Cdd:COG4913 343 ----------------------------LEREIERLERELEERERRRARLEALLAALGlplpaSAEEFAA--LRAEAAAL 392
|
250 260 270
....*....|....*....|....*....|....*....
gi 296439355 854 VETLRQEHRKEMQAmVADFSSAQAQLQARLAALEAELKD 892
Cdd:COG4913 393 LEALEEELEALEEA-LAEAEAALRDLRRELRELEAEIAS 430
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
584-769 |
2.27e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 2.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 584 LKEKTSKIQRLEEDWqsqkAKLQAQVSQMQQALEQCTsNYREDLQALKQLS--DLEREKLQRELQETTQQnhamKAQLEA 661
Cdd:COG4913 612 LAALEAELAELEEEL----AEAEERLEALEAELDALQ-ERREALQRLAEYSwdEIDVASAEREIAELEAE----LERLDA 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 662 SHQ--RALRMLEKARHQELKATEERLKKesshsLQIQHQTHRLELQALEEKaRQELQEERERMQAQQALLLESLRQELSE 739
Cdd:COG4913 683 SSDdlAALEEQLEELEAELEELEEELDE-----LKGEIGRLEKELEQAEEE-LDELQDRLEAAEDLARLELRALLEERFA 756
|
170 180 190
....*....|....*....|....*....|
gi 296439355 740 QQAACSGHQKDLEALQAELRALGRQQASSQ 769
Cdd:COG4913 757 AALGDAVERELRENLEERIDALRARLNRAE 786
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
40-731 |
2.70e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 2.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 40 KKIAQLTKVIYALNTRQDEAEASMEALREAHQEELQNAVAETKArllqeqgcaeEEALLQRIQAlESALELQKRLTEEAL 119
Cdd:TIGR02169 258 EEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEA----------EIASLERSIA-EKERELEDAEERLAK 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 120 AESASCRLETKERELRVE-AEHAERVLTLSREMLELKADYERRLQHLTSHEATPQGRLPQESPETKSEPGQGPEMQEVLL 198
Cdd:TIGR02169 327 LEAEIDKLLAEIEELEREiEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKR 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 199 EVQRLRVENQQLSKDYARKAEELQATYERENE--AIRQAMQQSVSQALWQWQEKESDLRKnFQVQESALQAQVRKLEGDL 276
Cdd:TIGR02169 407 ELDRLQEELQRLSEELADLNAAIAGIEAKINEleEEKEDKALEIKKQEWKLEQLAADLSK-YEQELYDLKEEYDRVEKEL 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 277 EHRGRKISDLKKYAQKLKERIQDLDVQLKEARQENSELKGTAKKLGE-----------------KLAVAKDRMMLQEC-- 337
Cdd:TIGR02169 486 SKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSvgeryataievaagnrlNNVVVEDDAVAKEAie 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 338 -----RGTQQT----DAMKTELVSENKVLREE-----------------------------NDLEAGNLHPQQ------D 373
Cdd:TIGR02169 566 llkrrKAGRATflplNKMRDERRDLSILSEDGvigfavdlvefdpkyepafkyvfgdtlvvEDIEAARRLMGKyrmvtlE 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 374 QSCLKECPCMKGGTDmqtkkeASAETEYMKQQYEEDLRKIKHQTEEEKKHLKDQLVKRLEdlVKKHTVEIKSVRSSVEAE 453
Cdd:TIGR02169 646 GELFEKSGAMTGGSR------APRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRR--IENRLDELSQELSDASRK 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 454 RKKLQREVEaQLEEVRKKSEKEIKQLEEEKAALNVKLQNSLLEVLRLEEFIQQNKTRPTGAEESPQELGRQ--HCSILET 531
Cdd:TIGR02169 718 IGEIEKEIE-QLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARlsHSRIPEI 796
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 532 QDPCLKLDETSPRGEEYQDKLAAEEGTSSDEEErtkvLLKEGSDPQPPLGSLLKEKTSKIQRLEEDWQSQKAKLQAQVSQ 611
Cdd:TIGR02169 797 QAELSKLEEEVSRIEARLREIEQKLNRLTLEKE----YLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEE 872
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 612 MQQALEQctsnYREDLQALKQlsdlEREKLQRELQETTQQNHAMKAQLEASHQRALRMLEK--ARHQELKATEERLKKES 689
Cdd:TIGR02169 873 LEAALRD----LESRLGDLKK----ERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKleALEEELSEIEDPKGEDE 944
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 296439355 690 SHSL------QIQHQTHRLE--LQALE-------------EKARQELQEERERMQAQQALLLE 731
Cdd:TIGR02169 945 EIPEeelsleDVQAELQRVEeeIRALEpvnmlaiqeyeevLKRLDELKEKRAKLEEERKAILE 1007
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
599-769 |
3.58e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.17 E-value: 3.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 599 QSQKAKLQAQVSQMQQALEQCTSNYR------EDLQALKQLSDLERE--KLQRELQETTQQNHAMKAQLEASHQRALRML 670
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKNGlvdlseEAKLLLQQLSELESQlaEARAELAEAEARLAALRAQLGSGPDALPELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 671 EKARHQELKA----TEERLKKESShSLQIQHQTHRlELQALEEKARQELQEERERMQAQ---QALLLESLRQELSEQQAA 743
Cdd:COG3206 261 QSPVIQQLRAqlaeLEAELAELSA-RYTPNHPDVI-ALRAQIAALRAQLQQEAQRILASleaELEALQAREASLQAQLAQ 338
|
170 180
....*....|....*....|....*.
gi 296439355 744 CSGHQKDLEALQAELRALGRQQASSQ 769
Cdd:COG3206 339 LEARLAELPELEAELRRLEREVEVAR 364
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
109-927 |
5.45e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 5.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 109 ELQKRLTEEALAESASCRLETKERE-------LRVEAEHAERVLTLSREMLELKadYERRLQHLTSHEATPQGRLPQESP 181
Cdd:TIGR02169 171 KKEKALEELEEVEENIERLDLIIDEkrqqlerLRREREKAERYQALLKEKREYE--GYELLKEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 182 ETKSEPGQGPEMQEVLLEVQRLRVENQQLSKDYARKAEELQATYERENEAIrqamQQSVSQALWQWQEKESDLRKnFQVQ 261
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGEL----EAEIASLERSIAEKERELED-AEER 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 262 ESALQAQVRKLEGDLEHRGRKISDLKKYAQKLKERIQDLDVQLKEARQENSELKGTAKKLGEKLAVAKDRM-MLQECRGT 340
Cdd:TIGR02169 324 LAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLeKLKREINE 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 341 QQTDAMKteLVSENKVLREE-NDLEAGNLHPQQDQSCLKEcpcmkggtDMQTKKEASAETEYMKQQYEEDLRKIKHQTEE 419
Cdd:TIGR02169 404 LKRELDR--LQEELQRLSEElADLNAAIAGIEAKINELEE--------EKEDKALEIKKQEWKLEQLAADLSKYEQELYD 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 420 EKKHLkDQLVKRLEDLVKKHTVEIKSVRSSVEAERKKlqREVEAQLEEVRKKSEKEIKQL----EEEKAALNVKLQNSL- 494
Cdd:TIGR02169 474 LKEEY-DRVEKELSKLQRELAEAEAQARASEERVRGG--RAVEEVLKASIQGVHGTVAQLgsvgERYATAIEVAAGNRLn 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 495 -------------LEVLRLEE-----FIQQNKTRPtgaEESPQELGRQHCSI-----LETQDPCLK-------------- 537
Cdd:TIGR02169 551 nvvveddavakeaIELLKRRKagratFLPLNKMRD---ERRDLSILSEDGVIgfavdLVEFDPKYEpafkyvfgdtlvve 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 538 -LDETSPRGEEYQ---------DKLAAEEGTSSDEEERTKVLLKEgsdpqPPLGSLLKEKTSKIQRLEEDWQSQKAKLQA 607
Cdd:TIGR02169 628 dIEAARRLMGKYRmvtlegelfEKSGAMTGGSRAPRGGILFSRSE-----PAELQRLRERLEGLKRELSSLQSELRRIEN 702
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 608 QVSQMQQALEQCTSNYRE---DLQALKQLSDLEREKL---QRELQETTQQNHAMKAQLEASHQRALRMLEKArhQELKAT 681
Cdd:TIGR02169 703 RLDELSQELSDASRKIGEiekEIEQLEQEEEKLKERLeelEEDLSSLEQEIENVKSELKELEARIEELEEDL--HKLEEA 780
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 682 EERLKKESSHSL--QIQHQTHRLELQALEEKARQELQEERERMQAQQALLLESLRQELSEQQAACSGHQKDLEALQAELR 759
Cdd:TIGR02169 781 LNDLEARLSHSRipEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLN 860
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 760 ALGRQqassqcpgdskdhiiateerggpgqagsppgaagqgsgegcgLWEENAQLQDAVRRLRAEVEQHQQEAQKLRDQR 839
Cdd:TIGR02169 861 GKKEE------------------------------------------LEEELEELEAALRDLESRLGDLKKERDELEAQL 898
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 840 RFLEETQQAQRArEVETLRQEhrkemqamvadfssaQAQLQARLAALEAELKDSGEKPGKGASRPEDLQLIGRLQTRLKE 919
Cdd:TIGR02169 899 RELERKIEELEA-QIEKKRKR---------------LSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQR 962
|
....*...
gi 296439355 920 REDIIKQL 927
Cdd:TIGR02169 963 VEEEIRAL 970
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
216-893 |
7.01e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.22 E-value: 7.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 216 RKAEELQATYERENEAIRQAMQQSVSQALWQwqeKESDLRKNFQVQESALQAQVRKLEGDLEHRGRKISDLKKyaqKLKE 295
Cdd:pfam12128 217 RLNRQQVEHWIRDIQAIAGIMKIRPEFTKLQ---QEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSA---ELNQ 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 296 RIQDLDVQLKEARQENSELKGTAKKlgeklAVAKDRMMLqecrgtqqtdamktELVSENKVLREENDLEAGNLHPQQDQS 375
Cdd:pfam12128 291 LLRTLDDQWKEKRDELNGELSAADA-----AVAKDRSEL--------------EALEDQHGAFLDADIETAAADQEQLPS 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 376 CLKECPCMKGGTDMQTKKEASAEteymkQQYEEDLRKIKHQTEEEKKHLKDQLVKRLEDLVKKHTVEiksvRSSVEAERK 455
Cdd:pfam12128 352 WQSELENLEERLKALTGKHQDVT-----AKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVA----EDDLQALES 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 456 KLQREVEAQLEEVRKKSEKEIKQLEEEKAALN-VKLQNSLLEVLRL---------EEFIQQNKTRPTGAEESPQELGRQH 525
Cdd:pfam12128 423 ELREQLEAGKLEFNEEEYRLKSRLGELKLRLNqATATPELLLQLENfderierarEEQEAANAEVERLQSELRQARKRRD 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 526 CSILETQDPCLKLDETSPRGEEYQDKLAAEEGT--------SSDEEER------TKVLLKEGSDPQPPLGSLLKEKTS-- 589
Cdd:pfam12128 503 QASEALRQASRRLEERQSALDELELQLFPQAGTllhflrkeAPDWEQSigkvisPELLHRTDLDPEVWDGSVGGELNLyg 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 590 ---KIQRLE-EDWQSQKAKLQAQVSQMQQALEQCTSNYREDLQALKQLSdLEREKLQRELQ---ETTQQNHAMKAQLEAS 662
Cdd:pfam12128 583 vklDLKRIDvPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQAN-GELEKASREETfarTALKNARLDLRRLFDE 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 663 HQRALRMLEKARHQELKATEERLKKesshsLQIQHQTHRLELQALEEKARQELQEERERMQAQQALLLESLRQELSEQQA 742
Cdd:pfam12128 662 KQSEKDKKNKALAERKDSANERLNS-----LEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKA 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 743 ACSGHQkdlEALQAELRALGRQQASSqcpgdskdhiiateerggpgqagsppgAAGQGSGEgcglwEENAQLQDAVRRLR 822
Cdd:pfam12128 737 AIAARR---SGAKAELKALETWYKRD---------------------------LASLGVDP-----DVIAKLKREIRTLE 781
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 296439355 823 AEVEQHQQEAQKLRDQRRFLEETQQAQRAREVETLRqEHRKEMQAMVADFSSAQAQLQARLAALEAELKDS 893
Cdd:pfam12128 782 RKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLS-NIERAISELQQQLARLIADTKLRRAKLEMERKAS 851
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
53-725 |
1.14e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.58 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 53 NTRQDEAEASMEALREAHQEELQNAVAETKARLLQEQGCAEEEALLQRIQALESALELQKRLTEEALAESASCRLETKER 132
Cdd:pfam02463 197 LQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 133 ELRVEAEHAERVLTLSREMLELKA---DYERRLQHLTSHEATPQGRLPQESPETKSEPGQGPEMQEVLLEVQRLRVENQQ 209
Cdd:pfam02463 277 EEKEKKLQEEELKLLAKEEEELKSellKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEE 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 210 LSKDYARKAEELQATYERENEAIRQAMQQSVSQALWQWQEKEsdlRKNFQVQESALQAQVRKLEGDLEHRGRKISDLKKY 289
Cdd:pfam02463 357 EEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE---LKSEEEKEAQLLLELARQLEDLLKEEKKEELEILE 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 290 AQKLKERIQDLDVQLKEARQENSELKGTAKKL-GEKLAVAKDRMMLQECRGTQQTDAMKTELVSENKVLREENDLEAGNL 368
Cdd:pfam02463 434 EEEESIELKQGKLTEEKEELEKQELKLLKDELeLKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLL 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 369 HPQQDQSCLKECPCMKGGTDMQT-------KKEASAETEYMKQQYEEDLRKIKHQTEEEKKHLKDQLVKRLEDLVKKHTV 441
Cdd:pfam02463 514 ALIKDGVGGRIISAHGRLGDLGVavenykvAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKS 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 442 EIKSVRSSVEAERKKLQREVEAQLEEVRKKSEKEIKQLEEEKAALN--VKLQNSLLEVLRLEEFIQQNKTRPTGAEESPQ 519
Cdd:pfam02463 594 IAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKEsaKAKESGLRKGVSLEEGLAEKSEVKASLSELTK 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 520 ELGRQHCSILETQDPCLKLDETSPRGEEYQDKLAAEEGTSSDEEERTKVLLKEGSDPQPPLGSLLKEKTSKIQRLEEDWQ 599
Cdd:pfam02463 674 ELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEE 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 600 SQKAKLQAQVSQMQQALEQCTSNYREDLQALKQL-SDLEREKLQRELQETTQQNHAMKAQLEASHQRALR------MLEK 672
Cdd:pfam02463 754 KSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKvEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLieqeekIKEE 833
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 296439355 673 ARHQELKATEERLK-----------------------KESSHSLQIQHQTHRLELQALEEK---ARQELQEERERMQAQ 725
Cdd:pfam02463 834 ELEELALELKEEQKleklaeeelerleeeitkeellqELLLKEEELEEQKLKDELESKEEKekeEKKELEEESQKLNLL 912
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
584-896 |
1.48e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.18 E-value: 1.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 584 LKEKTSKIQRLEEDWQS---------QKAKLQAQVSQMQQALEQCTSNYREDLQALKQLSDlEREKLQRELQETTQQNHA 654
Cdd:COG3096 315 LEELSARESDLEQDYQAasdhlnlvqTALRQQEKIERYQEDLEELTERLEEQEEVVEEAAE-QLAEAEARLEAAEEEVDS 393
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 655 MKAQLeASHQRALRMLEK---ARHQELKATEErlkkesshslqIQHQTHRLELQAleEKARQELQEERERMQAQQALLLE 731
Cdd:COG3096 394 LKSQL-ADYQQALDVQQTraiQYQQAVQALEK-----------ARALCGLPDLTP--ENAEDYLAAFRAKEQQATEEVLE 459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 732 sLRQELSEQQAACSGHQKDLEALQAELRALGRQQAssqcpgdskdhiiateerggpgqagsppgaagqgsgegcglWEEN 811
Cdd:COG3096 460 -LEQKLSVADAARRQFEKAYELVCKIAGEVERSQA-----------------------------------------WQTA 497
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 812 AQLQDAVRRLRAEVEQHQQEAQKLRDQRRFLEETQQAQRAREVETLRQEHRKEMQAMVADFssaQAQLQARLAALEAELK 891
Cdd:COG3096 498 RELLRRYRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEEL---LAELEAQLEELEEQAA 574
|
....*
gi 296439355 892 DSGEK 896
Cdd:COG3096 575 EAVEQ 579
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
394-748 |
1.60e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.20 E-value: 1.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 394 EASAETEYMKQQYEEDLRKIkhQTEEEKKHLKDQLVKRLEDLVKKHTVEIKSVRSsvEAERKKLQREVEAQLEEVRKKSE 473
Cdd:pfam02463 160 EEAAGSRLKRKKKEALKKLI--EETENLAELIIDLEELKLQELKLKEQAKKALEY--YQLKEKLELEEEYLLYLDYLKLN 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 474 KEIKQLEEEKAALNVKLQNSLLEVLRLEEFIQQNKTRPTGAEESPQELGRQHCSILETQDpclkldetsprgEEYQDKLA 553
Cdd:pfam02463 236 EERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEE------------EELKSELL 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 554 AEEGTSSDEEERTKVLLKEGSDPQPPLgSLLKEKTSKIQRLEEDWQSQKAKLQAQVSQMQQALEQCTSNYREDLQALKQL 633
Cdd:pfam02463 304 KLERRKVDDEEKLKESEKEKKKAEKEL-KKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 634 SD-LEREKLQRELQETTQQNHAMKAQLEASHQRALRMLEKARHQELKATEERLKKE---SSHSLQIQHQTHRLELQALEE 709
Cdd:pfam02463 383 SErLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESielKQGKLTEEKEELEKQELKLLK 462
|
330 340 350
....*....|....*....|....*....|....*....
gi 296439355 710 KARQELQEERERMQAQQALLLESLRQELSEQQAACSGHQ 748
Cdd:pfam02463 463 DELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQK 501
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
95-739 |
1.66e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.91 E-value: 1.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 95 EALLQRIQALESALELQKRLTEEALAESAScrLETKERELRVEAEHAERVLTLSREMLELKADYERRLQHLTSHEATPQG 174
Cdd:PRK03918 182 EKFIKRTENIEELIKEKEKELEEVLREINE--ISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 175 RLPQESPETKSEPGQGPEMQEVLLEVQRLrvenqqlsKDYARKAEELQATYERENEAIRQamqqsVSQALWQWQEKESDL 254
Cdd:PRK03918 260 KIRELEERIEELKKEIEELEEKVKELKEL--------KEKAEEYIKLSEFYEEYLDELRE-----IEKRLSRLEEEINGI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 255 RKNFQVQESaLQAQVRKLEGDLEHRGRKISDLKKYAQKLkERIQDLDVQLKEARQENSEL-KGTAKKLGEKLAVAKDRMM 333
Cdd:PRK03918 327 EERIKELEE-KEERLEELKKKLKELEKRLEELEERHELY-EEAKAKKEELERLKKRLTGLtPEKLEKELEELEKAKEEIE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 334 LQECRGTQQTDAMKTELVSENKVLREEndleagnlhpqqdQSCLKECPCMKGGTDMQTKKEasaeteyMKQQYEEDLRKI 413
Cdd:PRK03918 405 EEISKITARIGELKKEIKELKKAIEEL-------------KKAKGKCPVCGRELTEEHRKE-------LLEEYTAELKRI 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 414 khqtEEEKKHLKDQLVKRLEDLVKKHTVEIKSVRSSVEAERKKLQREVEAQLEEVR----KKSEKEIKQLEEEKAALNVK 489
Cdd:PRK03918 465 ----EKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNleelEKKAEEYEKLKEKLIKLKGE 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 490 LQNSLLEVLRLEEFIQQNKTRPTGAEESPQELGRQHCSILETQDPCLK-LDETSPRGEEYQDKLAAEEGTSSDEEERTKV 568
Cdd:PRK03918 541 IKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEeLEERLKELEPFYNEYLELKDAEKELEREEKE 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 569 LLKEGSDpqpplgslLKEKTSKIQRLEEDWQSQKAKLQaqvsqmqqaleqctsnyredlQALKQLSDLEREKLQRELQET 648
Cdd:PRK03918 621 LKKLEEE--------LDKAFEELAETEKRLEELRKELE---------------------ELEKKYSEEEYEELREEYLEL 671
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 649 TQQNHAMKAQLEAshqralrmLEKARhQELKATEERLKKESShslqiQHQTHRLELQALEeKARQELQEERERMQAQQAL 728
Cdd:PRK03918 672 SRELAGLRAELEE--------LEKRR-EEIKKTLEKLKEELE-----EREKAKKELEKLE-KALERVEELREKVKKYKAL 736
|
650
....*....|.
gi 296439355 729 LLESLRQELSE 739
Cdd:PRK03918 737 LKERALSKVGE 747
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
261-596 |
4.06e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 4.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 261 QESALQAQVRKLEGDLEHRGRKISDLKKYAQKLKERIQDLDVQLKEARQENSELKGTAKKLGEKLAVAKDRMMLQECRGT 340
Cdd:TIGR02169 689 ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIE 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 341 QQTDAMktelvseNKVLREENDLEAGNLHPQQDQSclkecpcmkgGTDMQTKKEASAETEYMKQQYEEDLRKI---KHQT 417
Cdd:TIGR02169 769 ELEEDL-------HKLEEALNDLEARLSHSRIPEI----------QAELSKLEEEVSRIEARLREIEQKLNRLtleKEYL 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 418 EEEKKHLKDQL--VKRLEDLVKKHTVEIKSVRSSVEAERKKLQREVEaQLEEVRKKSEKEIKQLEEEKAALNVKLQNSLL 495
Cdd:TIGR02169 832 EKEIQELQEQRidLKEQIKSIEKEIENLNGKKEELEEELEELEAALR-DLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 496 EVLRLEEFIQQNKTRPTGAEESPQELGRQHCSILETQDPCLKLDETSPRGEEYQDKLAAEEGTSSDEEERTKVLLKEGSD 575
Cdd:TIGR02169 911 QIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDE 990
|
330 340
....*....|....*....|.
gi 296439355 576 PQPPLGSLLKEKTSKIQRLEE 596
Cdd:TIGR02169 991 LKEKRAKLEEERKAILERIEE 1011
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
192-705 |
4.70e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.81 E-value: 4.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 192 EMQEVLLEVQRLRVENQQLSKDYARKAEELQATYERENEAIRQAMQQsvsqalwqwqekesdlRKNFQVQESALQAQVRK 271
Cdd:pfam15921 318 QLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTE----------------RDQFSQESGNLDDQLQK 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 272 LEGDLEHRGRKISDLKKYAQKLKER-------IQDLDVQLKEARQENSELKGTAKKLGEKLAVAKDRMMLQ---ECRGTQ 341
Cdd:pfam15921 382 LLADLHKREKELSLEKEQNKRLWDRdtgnsitIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAiqgKNESLE 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 342 QTDAMKTELVSENKVLREE-NDLEAGNLHPQQDQSCLKECPcmkggTDMQTKKEA----SAETEYMKQQYEEDLRKIKH- 415
Cdd:pfam15921 462 KVSSLTAQLESTKEMLRKVvEELTAKKMTLESSERTVSDLT-----ASLQEKERAieatNAEITKLRSRVDLKLQELQHl 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 416 ----------QTEEEKKHL----KDQLVKRLEDLVKKHTVEIKS---VRSSVEAERKKLQREVE------AQLEEVRKKS 472
Cdd:pfam15921 537 knegdhlrnvQTECEALKLqmaeKDKVIEILRQQIENMTQLVGQhgrTAGAMQVEKAQLEKEINdrrlelQEFKILKDKK 616
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 473 EKEIKQLEEEKAAL---NVKLQNSLLEVLRLEEFIQQNKTRPTGAEESpqelGRQHCSILETQDPCLKLD--ETSPRGEE 547
Cdd:pfam15921 617 DAKIRELEARVSDLeleKVKLVNAGSERLRAVKDIKQERDQLLNEVKT----SRNELNSLSEDYEVLKRNfrNKSEEMET 692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 548 YQDKLAAEEGTSSDEEERTKVLLK--EGSDPQPPLGSLLKEKTSKIQRLEEDwqsqkaKLQAQVsqmqQALEQCTSNYRE 625
Cdd:pfam15921 693 TTNKLKMQLKSAQSELEQTRNTLKsmEGSDGHAMKVAMGMQKQITAKRGQID------ALQSKI----QFLEEAMTNANK 762
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 626 DLQALKQlsdlEREKLQRELQETTQQNHAMKAQLEASHQRALRMLEKARHQELKATEERLK-KESSHSLQIQHQ-THRLE 703
Cdd:pfam15921 763 EKHFLKE----EKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQfAECQDIIQRQEQeSVRLK 838
|
..
gi 296439355 704 LQ 705
Cdd:pfam15921 839 LQ 840
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
584-767 |
6.64e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 6.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 584 LKEKTSKIQRLEEDWQSQKAKLQAQVSQMQQALEQCTSNYREDLQALKQLSDLERE--KLQRELQETTQQNHAMKAQLEA 661
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQElaALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 662 SHQRALRMLEKA----RHQELK-----------ATEERLKKESSHSLQIQHQTHRLELQALEEKaRQELQEERERMQAQQ 726
Cdd:COG4942 102 QKEELAELLRALyrlgRQPPLAlllspedfldaVRRLQYLKYLAPARREQAEELRADLAELAAL-RAELEAERAELEALL 180
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 296439355 727 ALLLE---SLRQELSEQQAACSGHQKDLEALQAELRALGRQQAS 767
Cdd:COG4942 181 AELEEeraALEALKAERQKLLARLEKELAELAAELAELQQEAEE 224
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
594-896 |
8.67e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.87 E-value: 8.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 594 LEEDWQSQKAKLQAQVSQM--QQALEQctsnYREDLQALK----------QLSDLEREKLQRELQETTQQNHAMKAQLeA 661
Cdd:PRK04863 326 LEQDYQAASDHLNLVQTALrqQEKIER----YQADLEELEerleeqnevvEEADEQQEENEARAEAAEEEVDELKSQL-A 400
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 662 SHQRALRMLEKarhqelkateerlkkessHSLQIQHQTHRLE-------LQALEEKARQELQEERERMQAQQALLLESLR 734
Cdd:PRK04863 401 DYQQALDVQQT------------------RAIQYQQAVQALErakqlcgLPDLTADNAEDWLEEFQAKEQEATEELLSLE 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 735 QELSEQQAACSGHQKDLEALQAELRALGRQQAssqcpgdskdhiiateerggpgqagsppgaagqgsgegcglWEENAQL 814
Cdd:PRK04863 463 QKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEA-----------------------------------------WDVAREL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 815 QDAVRRLRAEVEQHQQEAQKLRDQRRFLEETQQAQRarevetLRQEHRKEMQAMVADFSSAQ---AQLQARLAALEAELK 891
Cdd:PRK04863 502 LRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAER------LLAEFCKRLGKNLDDEDELEqlqEELEARLESLSESVS 575
|
....*
gi 296439355 892 DSGEK 896
Cdd:PRK04863 576 EARER 580
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
604-885 |
8.70e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 8.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 604 KLQAQVSQMQQALEQCTSNYREDLQALKQLSDLEREklqRELQETTQQNHAMKAQLEASHQRALRMLEKARHQELKATEE 683
Cdd:COG4913 222 DTFEAADALVEHFDDLERAHEALEDAREQIELLEPI---RELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELE 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 684 RLKKESShslqiQHQTHRLELQALEEKARQELQEERERMQAQQALLLESLRQELSEQQAACSGHQKDLEALQAELRALGR 763
Cdd:COG4913 299 ELRAELA-----RLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGL 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 764 QQASSQcpgdskdhiiateerggpgqagsppgaagqgsgegcglweenAQLQDAVRRLRAEVEQHQQEAQKLRDQRRFLE 843
Cdd:COG4913 374 PLPASA------------------------------------------EEFAALRAEAAALLEALEEELEALEEALAEAE 411
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 296439355 844 ETQQAQRaREVETLRQEhRKEMQAMVADFSSAQAQLQARLAA 885
Cdd:COG4913 412 AALRDLR-RELRELEAE-IASLERRKSNIPARLLALRDALAE 451
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
818-1049 |
2.15e-04 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 45.42 E-value: 2.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 818 VRRLRAEVEQHQQEAQKL----------RDQRRFLEETQQAQRAREVETLRQEHRKEMQAMVADFSSAQAQLQARLAALE 887
Cdd:PTZ00108 1104 VEKLNAELEKKEKELEKLknttpkdmwlEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKK 1183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 888 AELKDSGEKPGKGASRPEDL--QLIGRLQTRLKEREDIIKQLTEERRFHYAAFPSAMSHRNRSFSFNPHPGYLTPSMKKK 965
Cdd:PTZ00108 1184 SSADKSKKASVVGNSKRVDSdeKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSD 1263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 966 --KVEDVPSRVVSVPNLASYAKNFLSGDLSSRINAPPITTSPSLDPSPSCGRTY--KPNQSTDAKTATRTPDGETAQAKE 1041
Cdd:PTZ00108 1264 dlSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSlaALKKKKKSEKKTARKKKSKTRVKQ 1343
|
....*...
gi 296439355 1042 VQQKQGSP 1049
Cdd:PTZ00108 1344 ASASQSSR 1351
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
703-901 |
2.26e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 703 ELQALEEKArQELQEERERMQAQQALL---LESLRQELSEQQAACSGHQKDLEALQAELRALGRQQASSQCPGDSKDHII 779
Cdd:COG4942 28 ELEQLQQEI-AELEKELAALKKEEKALlkqLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 780 ATEERGGPGQAGSPPGAAGQGSGEGCGLWEENAQLQDAVRRLRAEVEQHQQEAQKLRDQRRFLEE---------TQQAQR 850
Cdd:COG4942 107 AELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAeraeleallAELEEE 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 296439355 851 AREVETLRQEHRKEMQAMVADFSSAQAQ----------LQARLAALEAELKDSGEKPGKGA 901
Cdd:COG4942 187 RAALEALKAERQKLLARLEKELAELAAElaelqqeaeeLEALIARLEAEAAAAAERTPAAG 247
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
592-868 |
2.40e-04 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 45.36 E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 592 QRLEEDWQSQ-KAKLQAQVSQMQQALEQCTSNyredlQALKQLSDLEREKLQRELQETTQQnhaMKAQLEASHQRALRML 670
Cdd:pfam13779 477 LRIEDGDLSDaERRLRAAQERLSEALERGASD-----EEIAKLMQELREALDDYMQALAEQ---AQQNPQDLQQPDDPNA 548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 671 EKARHQELKATeerlkkesshslqiqhqthrleLQALEEKARQELQEERERMQAQQALLLESLRQELSEQQAacSGHQKD 750
Cdd:pfam13779 549 QEMTQQDLQRM----------------------LDRIEELARSGRRAEAQQMLSQLQQMLENLQAGQPQQQQ--QQGQSE 604
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 751 LEALQAELRALGRQQ----------------ASSQCPGDSKDHIIATEERGGPGQAGSPPGAAGQGSGEGcGLWEENAQL 814
Cdd:pfam13779 605 MQQAMDELGDLLREQqqlldetfrqlqqqggQQQGQPGQQGQQGQGQQPGQGGQQPGAQMPPQGGAEALG-DLAERQQAL 683
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 296439355 815 QDAVRRLRAEVEQHQQEA--QKLRDQRRFLEETQQA-----------QRAREVETLRQEHRKEMQAM 868
Cdd:pfam13779 684 RRRLEELQDELKELGGKEpgQALGDAGRAMRDAEEAlgqgdlagavdAQGRALEALRKGAQQLAEAM 750
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
262-688 |
2.42e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 2.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 262 ESALQAQVRKLEGDLEHRGRKISDLKKYAQKLKERIQDLDVQLKEARQENSELKG---TAKKLGEKLAVAKDRMMLQECR 338
Cdd:TIGR04523 35 EKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDklkKNKDKINKLNSDLSKINSEIKN 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 339 GTQQTDAMKTELVSENKVLREENDLEAGNLhpqqdqsclkecpcmkggtDMQTKKEasAETEYMKQQYeEDLRKIKHQTE 418
Cdd:TIGR04523 115 DKEQKNKLEVELNKLEKQKKENKKNIDKFL-------------------TEIKKKE--KELEKLNNKY-NDLKKQKEELE 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 419 EEKKHLKDQLVKRLEDLVK-KHTVEIKSVRSSVEAERKKLQREVEAQLEEVRKKS---EKEIKQLEEEKAALNVKLQNSL 494
Cdd:TIGR04523 173 NELNLLEKEKLNIQKNIDKiKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNnqlKDNIEKKQQEINEKTTEISNTQ 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 495 LEVLRLEEFIQQNKTRptgAEESPQELGRQHCSILETQDPCLKLD-ETSPRGEEYQDKLAAEEGTSSDEEERTKVLLKEG 573
Cdd:TIGR04523 253 TQLNQLKDEQNKIKKQ---LSEKQKELEQNNKKIKELEKQLNQLKsEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQ 329
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 574 SDPQPPLGSLLKEKTSKIQRLEEDWQSQKAKLQAQVSQMQQALEQCTSNYREDLQALKQLsDLEREKLQRELQETTQQNH 653
Cdd:TIGR04523 330 ISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNL-ESQINDLESKIQNQEKLNQ 408
|
410 420 430
....*....|....*....|....*....|....*
gi 296439355 654 AMKAQLEaSHQRALRMLEKaRHQELKATEERLKKE 688
Cdd:TIGR04523 409 QKDEQIK-KLQQEKELLEK-EIERLKETIIKNNSE 441
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
40-735 |
3.16e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 3.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 40 KKIAQLTKVIYALNTRQDEAEASMEALrEAHQEELQNAVAETKARLLQEQGCAEEEALLQRIQALESALELQKRL-TEEA 118
Cdd:TIGR02168 386 SKVAQLELQIASLNNEIERLEARLERL-EDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLeEALE 464
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 119 LAESASCRLETKERELRVEAEHAERVLTLSREMLELKADYERRLQHLTSHEATPQGRLPQESPETKSEPGQGPEMQEVLL 198
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALG 544
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 199 E-VQRLRVENqqlsKDYARKAEELQAtyerENEAIRQAMQQSVSqalWQWQEKESDLRKNFQVQESALQAqvrklegdle 277
Cdd:TIGR02168 545 GrLQAVVVEN----LNAAKKAIAFLK----QNELGRVTFLPLDS---IKGTEIQGNDREILKNIEGFLGV---------- 603
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 278 hrgrkISDLKKYAQKLKERIQDLDVQLKEARQENSELKGTAKKLGEKLAVAKDrmmlqecrgtqqtdamkTELVSENKVL 357
Cdd:TIGR02168 604 -----AKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLD-----------------GDLVRPGGVI 661
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 358 -REENDLEAGNLHPQQDQSCLKECpcmkggTDMQTKKEASAETEYmkQQYEEDLRKIKHQTEeekkhlkdQLVKRLEDLV 436
Cdd:TIGR02168 662 tGGSAKTNSSILERRREIEELEEK------IEELEEKIAELEKAL--AELRKELEELEEELE--------QLRKELEELS 725
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 437 KKHtveiksvrSSVEAERKKLQREVEaQLEEVRKKSEKEIKQLEEEKAALNVKLQNSLLEVLRLEEFIQQNKTRPTGAEE 516
Cdd:TIGR02168 726 RQI--------SALRKDLARLEAEVE-QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE 796
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 517 SPQELGRQHcSILETQdpclkLDETSPRGEEYQDKLAAEEGTSSDEEERTKVLLKEGSDPQPPLGSLLKEkTSKIQRLEE 596
Cdd:TIGR02168 797 ELKALREAL-DELRAE-----LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE-IEELEELIE 869
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 597 DWQSQKAKLQAQVSQMQQALEQCTSNYREDLQALKQLSDlEREKLQRELQETTQQNHAMKAQLEASHQRALRMLEKARHQ 676
Cdd:TIGR02168 870 ELESELEALLNERASLEEALALLRSELEELSEELRELES-KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 296439355 677 ---ELKATEERLKKESSHSLQIQHQTHRLE----------LQALEEkaRQELQEERERMQAQQALLLESLRQ 735
Cdd:TIGR02168 949 yslTLEEAEALENKIEDDEEEARRRLKRLEnkikelgpvnLAAIEE--YEELKERYDFLTAQKEDLTEAKET 1018
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
668-941 |
5.06e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 5.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 668 RMLEKARhQELKATEERLKkesshslqiqhqthrlELQALEEKARQE---LQEERERMQAQQALLLESLRQELSEQQAAC 744
Cdd:TIGR02169 170 RKKEKAL-EELEEVEENIE----------------RLDLIIDEKRQQlerLRREREKAERYQALLKEKREYEGYELLKEK 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 745 SGHQKDLEALQAELRALGRQQASSQCPGDSKDHIIATEERGGPGQAGSppgAAGQGSGEGCGLWEENAQLQDAVRRLRAE 824
Cdd:TIGR02169 233 EALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKK---IKDLGEEEQLRVKEKIGELEAEIASLERS 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 825 VEQHQQEAQKLRDQRRFLEE--TQQAQRAREVETLRQEHRKEMQAMVADFSSAQAQLQARLAALEAELKDSGEKPGKGAS 902
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAeiDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKD 389
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 296439355 903 RPEDLQLIGR----LQTRLKEREDIIKQLTEERRFHYAAFPSA 941
Cdd:TIGR02169 390 YREKLEKLKReineLKRELDRLQEELQRLSEELADLNAAIAGI 432
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
432-674 |
5.96e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 5.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 432 LEDLVKKHTVEIKSVRSSVEAERKKLQREV---EAQLEEVRKKS-----EKEIKQLEEEKAALNVKLQNSLLEVLRLEEF 503
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELeeaEAALEEFRQKNglvdlSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 504 IQQNKTRPTGAEESPQELgrqhcsileTQDPclKLDETSPRGEEYQDKLAAEEGTSSDEEERTKVLLKEgsdpqppLGSL 583
Cdd:COG3206 242 LAALRAQLGSGPDALPEL---------LQSP--VIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQ-------IAAL 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 584 LKEKTSKIQRLEEDWQSQKAKLQAQVSQMQQALEQCTSNYREDLQALKQLSDLERE-KLQRELQETTQQNHAMKAQLEAS 662
Cdd:COG3206 304 RAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREvEVARELYESLLQRLEEARLAEAL 383
|
250
....*....|..
gi 296439355 663 HQRALRMLEKAR 674
Cdd:COG3206 384 TVGNVRVIDPAV 395
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
592-801 |
6.96e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 44.05 E-value: 6.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 592 QRLEEdwqsQKAKLQAQVSQMQQALEQCtsnyreDLQALKQLSDLEREKLQRELQETTQQNHAMKAQLEASHQRALRMLE 671
Cdd:NF012221 1572 QRLEQ----EKQQQLAAISGSQSQLEST------DQNALETNGQAQRDAILEESRAVTKELTTLAQGLDALDSQATYAGE 1641
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 672 KARHQE-------LKATEERL---KKESSHSLQIQHQTHRLELQALEEK-ARQE---LQEERERMQAQQAL--------- 728
Cdd:NF012221 1642 SGDQWRnpfagglLDRVQEQLddaKKISGKQLADAKQRHVDNQQKVKDAvAKSEagvAQGEQNQANAEQDIddakadaek 1721
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 729 -LLESLRQELSEQQAACSGH--------QKDLEALQAELRALGRQ---QASSQCPGDSKDHIIATEErGGPGQAGSPPGA 796
Cdd:NF012221 1722 rKDDALAKQNEAQQAESDANaaandaqsRGEQDASAAENKANQAQadaKGAKQDESDKPNRQGAAGS-GLSGKAYSVEGV 1800
|
....*
gi 296439355 797 AGQGS 801
Cdd:NF012221 1801 AEPGS 1805
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
453-793 |
7.92e-04 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 43.50 E-value: 7.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 453 ERKKLQRE--VEAQLEE---VR-----KKSEKEIKQLEEEKAALNVKLQnsLLEVLRLEEFIQQNKTRptgaEESPQELG 522
Cdd:PTZ00108 968 ENGKIKKYsdALDILKEfylVRldlykKRKEYLLGKLERELARLSNKVR--FIKHVINGELVITNAKK----KDLVKELK 1041
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 523 RQhcsILETQDPCLKLDETSPRGEEYQDKLAAEEGTSSDEEERTKV------LLKEgsdpqpPLGSLLKEKTskiqrlee 596
Cdd:PTZ00108 1042 KL---GYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAavsydyLLSM------PIWSLTKEKV-------- 1104
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 597 dwqsqkAKLQAQVSQMQQALEQCTSN-----YREDLQALKQLSDLEREKLQRELQETTQQNHA-MKAQLEASHQRALRML 670
Cdd:PTZ00108 1105 ------EKLNAELEKKEKELEKLKNTtpkdmWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKtKGKASKLRKPKLKKKE 1178
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 671 EKARHQELKATEERLKKESSHSLQIQHQTHRLELQALEEKARQELQEERERMQAQQALLLESLRQELSEQQAACSGHQKD 750
Cdd:PTZ00108 1179 KKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDND 1258
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 296439355 751 LEALQAELRALGRQQA--SSQCPGDSKDHiIATEERGGPGQAGSP 793
Cdd:PTZ00108 1259 EFSSDDLSKEGKPKNApkRVSAVQYSPPP-PSKRPDGESNGGSKP 1302
|
|
| OmpH |
smart00935 |
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH ... |
809-890 |
8.46e-04 |
|
Outer membrane protein (OmpH-like); This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.
Pssm-ID: 214922 [Multi-domain] Cd Length: 140 Bit Score: 40.64 E-value: 8.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 809 EENAQLQDAVRRLRAEVEQHQQEAQKLRDQRRFLEETQQAQRAREVETLRQEHRKEMQAMVADFSSAQAQLQARLAALEA 888
Cdd:smart00935 11 QESPAGKAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQDLQKRQQ 90
|
..
gi 296439355 889 EL 890
Cdd:smart00935 91 EE 92
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
286-929 |
1.02e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.42 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 286 LKKYAQKLKERIQDLDVQLKEARQENSELKGTAKKLGEKLAVAKDRMMLQECRGTQQTDAMKTELVSENKVLREENDLEA 365
Cdd:pfam02463 175 LKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 366 GNLHPQQDQSCLKEcpcmkggtdmQTKKEASAETEYMKQQYEEDLRKIKHQTEEEKKHLKDQLVKRLEDLVKKHTVEIKS 445
Cdd:pfam02463 255 SSKQEIEKEEEKLA----------QVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 446 VRSSVEAERKKLQREVEAQLEEVRKKSEKEIKQLEEekaalnvKLQNSLLEVLRLEEFIQQNKTRPTGAEESPQELGRQH 525
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEE-------LEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEEL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 526 CSILETQDPCLKLDETSpRGEEYQDKLAAEEGTSSDEEERTKVLLKEGSDPQPPLGSLLKEKTSKIQRLEEDWQSQKAKL 605
Cdd:pfam02463 398 ELKSEEEKEAQLLLELA-RQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKE 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 606 QaqvsqmQQALEQCTSNYREDLQALKQLSDLEREKLQRELQETTQQNHAMKAQLEASHQRALRMLEKARHQELKATEERL 685
Cdd:pfam02463 477 T------QLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVI 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 686 KKEsshSLQIQHQTHRLELQALEEKARQELQEERERMQAQQALLLESLRQELSEQQAACSGHQKDLEALQAELRALGRQ- 764
Cdd:pfam02463 551 VEV---SATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEg 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 765 QASSQCPGDSKDHIIATEERGGPGQAGSppgaagQGSGEGCGLWEENAQLQDAVRRLRAEVEQHQQEAQKLRDQRRFLEE 844
Cdd:pfam02463 628 ILKDTELTKLKESAKAKESGLRKGVSLE------EGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEI 701
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 845 TQQAQRAREVETLRQEHRKEMQAMVADFSSAQAQLQARLAALEAELKDSGEKPGKGASRPEDLQLIGRLQTRLKEREDII 924
Cdd:pfam02463 702 KKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEERE 781
|
....*
gi 296439355 925 KQLTE 929
Cdd:pfam02463 782 KTEKL 786
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
453-779 |
1.04e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 453 ERKKLQREVEA--QLEEVRKKSEKEIkqleEEKAALNVKLQNSLLEVLRLEEFIQQNKTRPTGAEESPQELGRQHCSILE 530
Cdd:pfam17380 304 EKEEKAREVERrrKLEEAEKARQAEM----DRQAAIYAEQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMRE 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 531 TQDPCLkldETSPRGEEYQDKLAAEEGTSSDEEERTKVLLKEGSDPQPPLGSLLKEKTSKIQRLEEDWQSQKAKLQAQVS 610
Cdd:pfam17380 380 LERLQM---ERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQ 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 611 QMQQALEQCTSNYREdlqalKQLSDLEREKLQRELQETTQQNHAMKAQLEASHQRALRMLEKARHQELKATEERLKKESS 690
Cdd:pfam17380 457 ERQQQVERLRQQEEE-----RKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYE 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 691 HSLQIQHQTHRLELQALEEKARQELQ-----EERERMQAQQAllleslRQELSEQQAACSGHQKDLEALQ--AELRALGR 763
Cdd:pfam17380 532 EERRREAEEERRKQQEMEERRRIQEQmrkatEERSRLEAMER------EREMMRQIVESEKARAEYEATTpiTTIKPIYR 605
|
330
....*....|....*.
gi 296439355 764 QQASSQCPGDSKDHII 779
Cdd:pfam17380 606 PRISEYQPPDVESHMI 621
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
590-740 |
1.27e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 590 KIQRLEEDWQSQKAK---LQAQVSQMQQALEQCTSNYRE----DLQALK-QLSDLEREKLQRELQETTQQNHAMKAQLEA 661
Cdd:COG4913 296 ELEELRAELARLEAElerLEARLDALREELDELEAQIRGnggdRLEQLErEIERLERELEERERRRARLEALLAALGLPL 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 662 SHQRA--LRMLEKARHQELKATEERlkkessHSLQIQHQTHRLELQALEEkARQELQEERERMQAQQALL---LESLRQE 736
Cdd:COG4913 376 PASAEefAALRAEAAALLEALEEEL------EALEEALAEAEAALRDLRR-ELRELEAEIASLERRKSNIparLLALRDA 448
|
....
gi 296439355 737 LSEQ 740
Cdd:COG4913 449 LAEA 452
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
126-922 |
1.44e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 126 RLETKERELRVEAEHAERVLTLSREMLELkaDYERrlqhLTSHEATPQGRLPQESPETKSEPGQGPEMQEVLLEVQRLRV 205
Cdd:TIGR00618 110 YLEQKKGRGRILAAKKSETEEVIHDLLKL--DYKT----FTRVVLLPQGEFAQFLKAKSKEKKELLMNLFPLDQYTQLAL 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 206 ENQQLSKDYARKAEELQATYERENEAIRQAMQQSVSQAlwQWQEKESDLRKNFQVQESALQAQVRKLEGDLEHRGRKisd 285
Cdd:TIGR00618 184 MEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERK--QVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKK--- 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 286 lKKYAQKLKERIQDLDVQLKEARQENSELKGTAKKlgEKLAVAKDRMMLQECRGTQQTDAMKTELVSENKVLREENDLEA 365
Cdd:TIGR00618 259 -QQLLKQLRARIEELRAQEAVLEETQERINRARKA--APLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVK 335
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 366 GNLHPQQDQSCLKECPCMKGGTDMQTKKEASAETEYMKQQyeeDLRKIKHQTEEEKKHLKDQLvKRLEDLVKKHTVEIKS 445
Cdd:TIGR00618 336 QQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQH---TLTQHIHTLQQQKTTLTQKL-QSLCKELDILQREQAT 411
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 446 VRSSVEAERKKLQREVEAQLEEVRKKSEKEIKQLEEEKAALNVKLQNSLLEVL--RLEEFIQQNKTRptgaeespQELGR 523
Cdd:TIGR00618 412 IDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESaqSLKEREQQLQTK--------EQIHL 483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 524 QHCSILETQDPCLKLDETSPRGEEYQDKLAAEEGTSSDEEERTKVLLKEGSDPQPPLGSLLKEKTSKIQRLEEDWQSQKA 603
Cdd:TIGR00618 484 QETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKE 563
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 604 KLQaQVSQMQQALEQCTSNYREDLQALKQLSDLEREKLQRELQETtqqnhamKAQLEASHQRALRMLEKARHQELKATEE 683
Cdd:TIGR00618 564 QMQ-EIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAE-------DMLACEQHALLRKLQPEQDLQDVRLHLQ 635
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 684 RLKKESSHSLQIQHQTHRLELQALEEKARQELQEERERMQAQQALLLESLRQELSEQQAACSGHQKDLEALQAELRALGR 763
Cdd:TIGR00618 636 QCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEE 715
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 764 QQASSQCPGDSKDHIIATEERGGPGQAGSPPGAAGQGSGEGCGLWEENAQLQDAVRRLRAEVEQHQQEAQKLRDQRRFLE 843
Cdd:TIGR00618 716 YDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLRE 795
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 844 ETQQ--AQRAREVETLRQEHRKEMQAMVADFSSAQAQLQARLAALEAELKDSGEKPGKGASRPEDLQLIGRLQTRLKERE 921
Cdd:TIGR00618 796 EDTHllKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLS 875
|
.
gi 296439355 922 D 922
Cdd:TIGR00618 876 D 876
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
51-310 |
1.54e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 51 ALNTRQDEAEASMEALREAhQEELQNAVAETKarllqeqgcAEEEALLQRIQALESALELQKRLTEEALAEsascrLETK 130
Cdd:COG4942 17 AQADAAAEAEAELEQLQQE-IAELEKELAALK---------KEEKALLKQLAALERRIAALARRIRALEQE-----LAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 131 ERELrveAEHAERVLTLSREMLELKADYERRLQHL--TSHEATPQGRLPQESPetksepgqgpemqevlLEVQRLRVENQ 208
Cdd:COG4942 82 EAEL---AELEKEIAELRAELEAQKEELAELLRALyrLGRQPPLALLLSPEDF----------------LDAVRRLQYLK 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 209 QLSKDYARKAEELQATYERENEAIRQAMQQsvSQALWQWQEKESDLRKNFQVQESALQAQVRKLEGDLEHRGRKISDLKK 288
Cdd:COG4942 143 YLAPARREQAEELRADLAELAALRAELEAE--RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQ 220
|
250 260
....*....|....*....|..
gi 296439355 289 YAQKLKERIQDLDVQLKEARQE 310
Cdd:COG4942 221 EAEELEALIARLEAEAAAAAER 242
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
593-764 |
1.77e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 1.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 593 RLEEDWQSQKaKLQAQVSQMQQALE-QCT--SNYREDLQALK------QLSDLEREKL-------QRELQETTQQNHAMK 656
Cdd:PRK04863 384 RAEAAEEEVD-ELKSQLADYQQALDvQQTraIQYQQAVQALErakqlcGLPDLTADNAedwleefQAKEQEATEELLSLE 462
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 657 AQLEAS------HQRALRML-------------EKARHQELKATEERLKKESSHSLQIQHQT--HRLELQALEEKARQEL 715
Cdd:PRK04863 463 QKLSVAqaahsqFEQAYQLVrkiagevsrseawDVARELLRRLREQRHLAEQLQQLRMRLSEleQRLRQQQRAERLLAEF 542
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 296439355 716 Q----------EERERMQAQQALLLESLRQELSEQQAACSGHQKDLEALQAELRALGRQ 764
Cdd:PRK04863 543 CkrlgknlddeDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAAR 601
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
672-763 |
2.01e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.38 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 672 KARHQELKATEERLKKESshslQIQHQTHRLELQALEEKARQELQEERERMQAQQALLLE--SLRQELSEQQAACSGHQK 749
Cdd:COG0542 417 ERRLEQLEIEKEALKKEQ----DEASFERLAELRDELAELEEELEALKARWEAEKELIEEiqELKEELEQRYGKIPELEK 492
|
90
....*....|....
gi 296439355 750 DLEALQAELRALGR 763
Cdd:COG0542 493 ELAELEEELAELAP 506
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
295-724 |
2.08e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 295 ERIQDLDVQLKEARQENSELkgtAKKLGEKLAVAKDRMMLQECRGTQQTDAMKTELVSENKVLREEndLEAGNLHPQQDQ 374
Cdd:COG4717 71 KELKELEEELKEAEEKEEEY---AELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQE--LEALEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 375 SCLKEcpcmkggtdMQTKKEASAETEYMKQQYEEDLRKIKHQTEEEKKHLKDQLVKRLEDLVKkhtvEIKSVRSSVEAER 454
Cdd:COG4717 146 ERLEE---------LEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAE----ELEELQQRLAELE 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 455 KKLQReVEAQLEEVRKKSEKEIKQLEEEKAALNVKLQNSLLEVLRLEEFIQQNKTRPTGAEESPQELGRQHCSILETQDP 534
Cdd:COG4717 213 EELEE-AQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFL 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 535 CLKLDETSPRGEEYQ-DKLAAEEGTSSDEEERTKVLLKEGSDPQPPLGSLLKEKTSKIQRLEEDWQSQKAKLQAQVSQMQ 613
Cdd:COG4717 292 LLAREKASLGKEAEElQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQE 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 614 QA--LEQCTSNYREDLQALKQLSDlEREKLQRELQETTQQ----NHAMKAQLEASHQRALRMLEKARHQELKATEERLKK 687
Cdd:COG4717 372 IAalLAEAGVEDEEELRAALEQAE-EYQELKEELEELEEQleelLGELEELLEALDEEELEEELEELEEELEELEEELEE 450
|
410 420 430
....*....|....*....|....*....|....*..
gi 296439355 688 ESSHSLQIQHQTHRLELQALEEKARQELQEERERMQA 724
Cdd:COG4717 451 LREELAELEAELEQLEEDGELAELLQELEELKAELRE 487
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
809-923 |
2.13e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.49 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 809 EENAQLQDAVRRLRAEVEQHQQEAQKLRDQRRFLE------ETQQAQRAREVETLRQEhRKEMQAMVADFSSAQAQLQAR 882
Cdd:PRK09039 74 QGNQDLQDSVANLRASLSAAEAERSRLQALLAELAgagaaaEGRAGELAQELDSEKQV-SARALAQVELLNQQIAALRRQ 152
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 296439355 883 LAALEAELKDSgEKPGKG----------------ASRPEDLQ-----LIGRLQTRLKEREDI 923
Cdd:PRK09039 153 LAALEAALDAS-EKRDREsqakiadlgrrlnvalAQRVQELNryrseFFGRLREILGDREGI 213
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
812-899 |
2.44e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 41.86 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 812 AQLQDAVRRLRAEVEQHQQEAQKLRDQRRfleetQQAQRAREVETLRQEHRKEMQAMVADFSSAQAQLQARLAALEAELK 891
Cdd:PRK11448 145 HALQQEVLTLKQQLELQAREKAQSQALAE-----AQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRK 219
|
....*...
gi 296439355 892 DSGEKPGK 899
Cdd:PRK11448 220 EITDQAAK 227
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
616-866 |
2.50e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 41.73 E-value: 2.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 616 LEQCTSNYREDLQALKQLSDLEREKLQRELQETTQQNHAMKAQLEASH----QRALRMLEKARHQELKATEERLKKESSH 691
Cdd:pfam10174 441 LEEALSEKERIIERLKEQREREDRERLEELESLKKENKDLKEKVSALQpeltEKESSLIDLKEHASSLASSGLKKDSKLK 520
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 692 SLQIQHQTHRLELQALE---EKARQelQEERERMQAQQALLLESLRQELSEQQAACSGHQKDLEALQAELRALGRQQass 768
Cdd:pfam10174 521 SLEIAVEQKKEECSKLEnqlKKAHN--AEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEK--- 595
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 769 qcpgDSKDHIIATEERGGPGQAGSPPGAAGQGSGEGCGLWEENAQ-LQDAVRRLRAEVEQHQQEA------------QKL 835
Cdd:pfam10174 596 ----NDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQlLEEARRREDNLADNSQQLQleelmgalektrQEL 671
|
250 260 270
....*....|....*....|....*....|...
gi 296439355 836 RDQRRFLEETQQ--AQRAREVETLRQEHRKEMQ 866
Cdd:pfam10174 672 DATKARLSSTQQslAEKDGHLTNLRAERRKQLE 704
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
584-932 |
2.64e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 2.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 584 LKEKTSKIQRLEEdwQSQKAKLQAQVSQMQQALEQCTSNYREDLQALKQLSDLERE--KLQRELQETTQQNHAMKAQLEA 661
Cdd:COG4717 111 LEELREELEKLEK--LLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEEleELEAELAELQEELEELLEQLSL 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 662 SHQRALRMLEKAR---HQELKATEERLKKESSHSLQIQHQTHRLELQALEEKARQELQEERERMQAQQALL--------L 730
Cdd:COG4717 189 ATEEELQDLAEELeelQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLallglggsL 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 731 ESLRQELSEQQAACSGHQKDLEALQAELRALGRQQASSQCPGDSKDHIIATEERGGPGQAGSPPGAAGQGSGEGCGLWEE 810
Cdd:COG4717 269 LSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEE 348
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 811 NAQLQDAVRRLRAE--VEQHQQEAQKLRDQ-------------RRFLEETQQAQRAREVETLRQEHRKEMQAMVADFSSA 875
Cdd:COG4717 349 LQELLREAEELEEElqLEELEQEIAALLAEagvedeeelraalEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE 428
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 296439355 876 Q-----AQLQARLAALEAELKDSGEKPGKGASRPEDLQLIGRLQTRLKEREDIIKQLTEERR 932
Cdd:COG4717 429 EleeelEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELEELKAELRELAE 490
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
460-743 |
2.92e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.82 E-value: 2.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 460 EVEAQLEEVrkkseKEIKQLEEEKAALNVKLQNSLLEVLRLEEFIQQNKTRPTGAEESPQELgRQHCSILETqdpcLKLD 539
Cdd:PRK11281 40 DVQAQLDAL-----NKQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKL-RQAQAELEA----LKDD 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 540 ETSPRGEEYqDKLaaeegtssdeeertkvllkegsdPQPPLGSLLKEKTSKIQRLEEDW----------QSQKAKLQAQV 609
Cdd:PRK11281 110 NDEETRETL-STL-----------------------SLRQLESRLAQTLDQLQNAQNDLaeynsqlvslQTQPERAQAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 610 SQMQQALEQCTSNYREDLQALKQLSDLEREKLQRELQETTQQNhamkaqleaSHQRalrmlekarhQELKATEErlkkes 689
Cdd:PRK11281 166 YANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQN---------DLQR----------KSLEGNTQ------ 220
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 296439355 690 shslqiqhqthrleLQALEEKARQELQEERERMQAQQALLLESL---RQELSEQQAA 743
Cdd:PRK11281 221 --------------LQDLLQKQRDYLTARIQRLEHQLQLLQEAInskRLTLSEKTVQ 263
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
195-649 |
3.33e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.63 E-value: 3.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 195 EVLLEVQRLRVENQQ-----LSKDYARKAEELQATYERENEaiRQAMQQSVSQALWQwQEKESDLRKNFQVQESALQAQV 269
Cdd:pfam05483 362 EELLRTEQQRLEKNEdqlkiITMELQKKSSELEEMTKFKNN--KEVELEELKKILAE-DEKLLDEKKQFEKIAEELKGKE 438
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 270 RKLEGDLEHRGRKISDLKKYAQKLKERIQDLDVQLKEARQE--NSELKGTakklgeKLAVAKDRMMLQECRGTQQTDAMK 347
Cdd:pfam05483 439 QELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTEleKEKLKNI------ELTAHCDKLLLENKELTQEASDMT 512
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 348 TELvsenkvlreENDLEAGNLHPQQDQSCLKECPCMKGgTDMQTKKEASAETEYMKQQYEEdlRKIKHQTEEEKKHLKDQ 427
Cdd:pfam05483 513 LEL---------KKHQEDIINCKKQEERMLKQIENLEE-KEMNLRDELESVREEFIQKGDE--VKCKLDKSEENARSIEY 580
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 428 LVKRLEDLVKKHTVEIKSVRSSVEAERKKLQrEVEAQLEEVRKKSEKEIKQLEeekaALNVKLQNSLLEVlrleefiqqn 507
Cdd:pfam05483 581 EVLKKEKQMKILENKCNNLKKQIENKNKNIE-ELHQENKALKKKGSAENKQLN----AYEIKVNKLELEL---------- 645
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 508 ktrpTGAEESPQELGRQHCSILETQdpclKLDETSPRGEEYQDKLAAEEGTSSDEEERTKVLLKEGSdpqppLGSLLKEK 587
Cdd:pfam05483 646 ----ASAKQKFEEIIDNYQKEIEDK----KISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAE-----MVALMEKH 712
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 296439355 588 TSKIQRLEEDWQSQ----KAKLQAQvSQMQQALEQCTSNYREDLQALKQLSDLER---EKLQRELQETT 649
Cdd:pfam05483 713 KHQYDKIIEERDSElglyKNKEQEQ-SSAKAALEIELSNIKAELLSLKKQLEIEKeekEKLKMEAKENT 780
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
390-481 |
3.76e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 3.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 390 QTKKEASAETEYMKQQYEEDLRKIKHQTEEE----KKHLKDQL--VKRLEDLVKKHTVEIKSVRSSVEAERKKL---QRE 460
Cdd:PRK12704 46 EAKKEAEAIKKEALLEAKEEIHKLRNEFEKElrerRNELQKLEkrLLQKEENLDRKLELLEKREEELEKKEKELeqkQQE 125
|
90 100
....*....|....*....|.
gi 296439355 461 VEAQLEEVRKKSEKEIKQLEE 481
Cdd:PRK12704 126 LEKKEEELEELIEEQLQELER 146
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
192-497 |
3.84e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.15 E-value: 3.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 192 EMQEVLLEVQRLRVENQqLSKDYARkaeelqatyerenEAIRQAMQQSVSQALWQWQEKesdLRKNFQVQESALQAQvrk 271
Cdd:PHA02562 154 KLVEDLLDISVLSEMDK-LNKDKIR-------------ELNQQIQTLDMKIDHIQQQIK---TYNKNIEEQRKKNGE--- 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 272 legDLEHRGRKISDLKKYAQKLKERIQDLDVQLKEARQENSELKGTAKKLGEKLAVAKdrmmlqecrgtqqtdaMKTELV 351
Cdd:PHA02562 214 ---NIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIK----------------SKIEQF 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 352 SENKVLREENDleagnlhpqqdqsclkECPCMKGGTDMQTKKEASAETEYMKQQYEEDLRKIKHQTEEEKKHLKDQLVKR 431
Cdd:PHA02562 275 QKVIKMYEKGG----------------VCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKK 338
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 296439355 432 LEDLVKKHTVEIKSVrSSVEAERKKLQREVEaQLEEVRKKSEKEIKQLEEEKAALNVKLQNSLLEV 497
Cdd:PHA02562 339 LLELKNKISTNKQSL-ITLVDKAKKVKAAIE-ELQAEFVDNAEELAKLQDELDKIVKTKSELVKEK 402
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
703-893 |
4.18e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 4.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 703 ELQALEEkARQELQEERERMQAQQALLLEslRQELSEQQAACSGHQKDLEALQAELRALGRQQAssqcpgdskdhiiate 782
Cdd:COG4913 618 ELAELEE-ELAEAEERLEALEAELDALQE--RREALQRLAEYSWDEIDVASAEREIAELEAELE---------------- 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 783 erggpgqagsppgAAGQGSGEGcglweenAQLQDAVRRLRAEVEQHQQEAQKLRDQRRFLEETQQAQRAREVETLRQEHR 862
Cdd:COG4913 679 -------------RLDASSDDL-------AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEA 738
|
170 180 190
....*....|....*....|....*....|..
gi 296439355 863 KEMQAMVADFSSAQAQL-QARLAALEAELKDS 893
Cdd:COG4913 739 AEDLARLELRALLEERFaAALGDAVERELREN 770
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
425-668 |
4.55e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 4.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 425 KDQLVKRLEDLVKKHTvEIKSVRSSVEAERKKLQREVEaQLEEVRKKSEKEIKQLEEEKAALNVKLQNSLLEVLRLEEFI 504
Cdd:COG4942 22 AAEAEAELEQLQQEIA-ELEKELAALKKEEKALLKQLA-ALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 505 QQNKTRPTGAEESPQELGRQHC--SILETQDPclkldETSPRGEEYQDKLAAEEGTSSDEEERTKVLLKEgsdpqppLGS 582
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPlaLLLSPEDF-----LDAVRRLQYLKYLAPARREQAEELRADLAELAA-------LRA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 583 LLKEKTSKIQRLEEDWQSQKAKLQAQVSQMQQALEQCTSNYREDLQALKQLSDlEREKLQRELQETTQQNHAMKAQLEAS 662
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQ-EAEELEALIARLEAEAAAAAERTPAA 246
|
....*.
gi 296439355 663 HQRALR 668
Cdd:COG4942 247 GFAALK 252
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
72-721 |
5.23e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 40.83 E-value: 5.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 72 EELQN-AVAETKARLLQEQGCAEEEALLqrIQALESALELQKR---LTEEALAESASCRLETKERELRVEAEHAERV--- 144
Cdd:COG5022 820 IKLQKtIKREKKLRETEEVEFSLKAEVL--IQKFGRSLKAKKRfslLKKETIYLQSAQRVELAERQLQELKIDVKSIssl 897
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 145 ----LTLSREMLELK--------ADYERRLQHLTSHEATPQGRLPQESPETksepgqgpeMQEVLLEVQRLRVENQQLSK 212
Cdd:COG5022 898 klvnLELESEIIELKkslssdliENLEFKTELIARLKKLLNNIDLEEGPSI---------EYVKLPELNKLHEVESKLKE 968
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 213 dyarKAEELQATYERENEAIRQAMQQsvSQALWQWQEKESDLRKnfqvQESALQAQVRKLEGDLEHRGRKISDLKKYAQ- 291
Cdd:COG5022 969 ----TSEEYEDLLKKSTILVREGNKA--NSELKNFKKELAELSK----QYGALQESTKQLKELPVEVAELQSASKIISSe 1038
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 292 -KLKERIQDLDVQLKEARQENSELKGTAKKLGEK----LAVAKDRMMLQECRGTQQTDAMKTELVSENKVLREENDLE-- 364
Cdd:COG5022 1039 sTELSILKPLQKLKGLLLLENNQLQARYKALKLRrensLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQfi 1118
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 365 -----AGNLHPQQDQSCLKecpcmkggtdmqtkkeASAETEYMKQQYEED---LRKIKHQTEEEKKHLKDQLVKRLEDLV 436
Cdd:COG5022 1119 vaqmiKLNLLQEISKFLSQ----------------LVNTLEPVFQKLSVLqleLDGLFWEANLEALPSPPPFAALSEKRL 1182
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 437 KK-HTVEIKSVRSSVEAERKKlqREVEAQLEEVRKKSEKEIKQLEEEKAALNVKLQNSllevlRLEEFIQQNKTRPTGAE 515
Cdd:COG5022 1183 YQsALYDEKSKLSSSEVNDLK--NELIALFSKIFSGWPRGDKLKKLISEGWVPTEYST-----SLKGFNNLNKKFDTPAS 1255
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 516 ---ESPQELGRQHCSILETQDPCLKLDETSPRGE-EYQDKLAAEEGTSSDEEERTKVLLKEGSDpqpplGSLLKE--KTS 589
Cdd:COG5022 1256 msnEKLLSLLNSIDNLLSSYKLEEEVLPATINSLlQYINVGLFNALRTKASSLRWKSATEVNYN-----SEELDDwcREF 1330
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 590 KIQRLEEDWQSQKaklqaQVSQMQQALEQCTSNYREDLQALKQLSDLEREKLQRELQETTQQNH-------AMKAQLeAS 662
Cdd:COG5022 1331 EISDVDEELEELI-----QAVKVLQLLKDDLNKLDELLDACYSLNPAEIQNLKSRYDPADKENNlpkeilkKIEALL-IK 1404
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 663 HQRALRMLEKARHQELKatEERLKKESSH-SLQIQHQTHRLELQALEEKARQELQEERER 721
Cdd:COG5022 1405 QELQLSLEGKDETEVHL--SEIFSEEKSLiSLDRNSIYKEEVLSSLSALLTKEKIALLDR 1462
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
682-892 |
5.32e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 5.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 682 EERLKKESSHSLQIQHQTHRLELQALEEkARQELQEERERMQAQQALL--LESLRQELSEQQAACSGHQKDLEALQAELR 759
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKE-LEEELKEAEEKEEEYAELQeeLEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 760 ALGRQQASSQCpgdsKDHIIATEERGGPGQAGsppgaagqgsgegcglWEENAQLQDAVRRLRAEVEQHQQEAQKLRDQR 839
Cdd:COG4717 127 LLPLYQELEAL----EAELAELPERLEELEER----------------LEELRELEEELEELEAELAELQEELEELLEQL 186
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 296439355 840 RFLEETQQAQRAREVETLRQEHRKEMQamvadfssAQAQLQARLAALEAELKD 892
Cdd:COG4717 187 SLATEEELQDLAEELEELQQRLAELEE--------ELEEAQEELEELEEELEQ 231
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
584-932 |
5.69e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 5.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 584 LKEKTSKIQRLEEDwQSQKAKLQAQVSQMQQALEQCTsNYREDLQALKQLSDL--EREKLQRELQETTQQNHAMKAQLEA 661
Cdd:COG4717 80 LKEAEEKEEEYAEL-QEELEELEEELEELEAELEELR-EELEKLEKLLQLLPLyqELEALEAELAELPERLEELEERLEE 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 662 SHQRALRMLE-KARHQELKATEERLKKESSHSLQIQHQTHRLELQALEEKARQElqeERERMQAQQAllLESLRQELSEQ 740
Cdd:COG4717 158 LRELEEELEElEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAEL---EEELEEAQEE--LEELEEELEQL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 741 QAAcSGHQKDLEALQAELRALGrqQASSQCPGDSKDHIIATEERGGPGQAGSPPGAAGQGSGEGCGLWEENAQLQDAVRR 820
Cdd:COG4717 233 ENE-LEAAALEERLKEARLLLL--IAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 821 LRAEVEQHQQEAQKLRDQRRFLEET-------------QQAQRAREVETLRQE-----HRKEMQAMVADF---------- 872
Cdd:COG4717 310 LPALEELEEEELEELLAALGLPPDLspeellelldrieELQELLREAEELEEElqleeLEQEIAALLAEAgvedeeelra 389
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 296439355 873 ----SSAQAQLQARLAALEAELKDSGEKPGKGASRPEDLQL---IGRLQTRLKEREDIIKQLTEERR 932
Cdd:COG4717 390 aleqAEEYQELKEELEELEEQLEELLGELEELLEALDEEELeeeLEELEEELEELEEELEELREELA 456
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
76-303 |
6.20e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.39 E-value: 6.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 76 NAVAETkarLLQEQGCAEEEALLQRIQALESAL-ELQKRLTEealAESASCRLETKERELRVEAE---HAERVLTLSREM 151
Cdd:COG3206 155 NALAEA---YLEQNLELRREEARKALEFLEEQLpELRKELEE---AEAALEEFRQKNGLVDLSEEaklLLQQLSELESQL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 152 LELKADYERRLQHLTSHEatpqgRLPQESPETKSEPGQGPEMQEVLLEVQRLRVENQQLSKDYARKAEELQATyERENEA 231
Cdd:COG3206 229 AEARAELAEAEARLAALR-----AQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIAL-RAQIAA 302
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 296439355 232 IRQAMQQSVSQALwqwqekesdlrKNFQVQESALQAQVRKLEGDLEHRGRKISDLKKYAQKLKERIQDLDVQ 303
Cdd:COG3206 303 LRAQLQQEAQRIL-----------ASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVA 363
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
812-932 |
6.55e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 6.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 812 AQLQDAVRRLRAEVEQHQQEAQKLRDQRRFLEETQQAQRAREVETLRQEhRKEMQAMVADFSSAQAQLQARLAALEAELK 891
Cdd:COG4913 298 EELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLERE-IERLERELEERERRRARLEALLAALGLPLP 376
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 296439355 892 DS----GEKPGKGASRPEDL-QLIGRLQTRLKEREDIIKQLTEERR 932
Cdd:COG4913 377 ASaeefAALRAEAAALLEALeEELEALEEALAEAEAALRDLRRELR 422
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
456-683 |
6.67e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 6.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 456 KLQREVEAQLEEVRKK---SEKEIKQLEEEKAALNVKLQNSLLEVLRLEEFIQQNKTRPTGAEESPQELGRQ----HCSI 528
Cdd:COG4942 20 DAAAEAEAELEQLQQEiaeLEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEiaelRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 529 LETQDPCLKLDETSPRGEEYQDKLAAEEGTSSDEEERTKVLLKEGSDPQPPLGSLLKEKTSKIQRLEEDWQSQKAKLQAQ 608
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 296439355 609 VSQMQQAleqctsnyREDLQALKQlsdlEREKLQRELQETTQQNHAMKAQLEASHQRALRMLEKARHQELKATEE 683
Cdd:COG4942 180 LAELEEE--------RAALEALKA----ERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| polC |
PRK00448 |
DNA polymerase III PolC; Validated |
391-484 |
6.71e-03 |
|
DNA polymerase III PolC; Validated
Pssm-ID: 234767 [Multi-domain] Cd Length: 1437 Bit Score: 40.59 E-value: 6.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 391 TKKEASAETEYMKQQ--YEEDLRKIKHQTEEEKKHLKDQLVKRLEDLVKK---HTVEIKSVRSSVEAERKKLQREVEAQL 465
Cdd:PRK00448 104 KKNSPLFKSLLKKQKveVEGNKLIIKVNNEIERDHLKKKHLPKLIKQYEKfgfGILKIDFEIDDSKEELEKFEAQKEEED 183
|
90
....*....|....*....
gi 296439355 466 EEVRKKSEKEIKQLEEEKA 484
Cdd:PRK00448 184 EKLAKEALEAMKKLEAEKK 202
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
70-310 |
7.66e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 39.52 E-value: 7.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 70 HQEELQNAVAETKARLLQEQGCAEEEALLqriQALESALELQKRLTEEALAESASCRLE---------------TKEREL 134
Cdd:pfam00038 21 RFLEQQNKLLETKISELRQKKGAEPSRLY---SLYEKEIEDLRRQLDTLTVERARLQLEldnlrlaaedfrqkyEDELNL 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 135 RVEAEHAERVL--TLSREMLElKADYERRLQHLTS--------HE---ATPQGRLPQESPETKSEPGQGPEMQEVLLEVQ 201
Cdd:pfam00038 98 RTSAENDLVGLrkDLDEATLA-RVDLEAKIESLKEelaflkknHEeevRELQAQVSDTQVNVEMDAARKLDLTSALAEIR 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 202 RLRVENQQLSKD-----YARKAEELQATYERENEAIRQAmQQSVSQALWQWQEKESDLrKNFQVQESALQAQVRKLEGDL 276
Cdd:pfam00038 177 AQYEEIAAKNREeaeewYQSKLEELQQAAARNGDALRSA-KEEITELRRTIQSLEIEL-QSLKKQKASLERQLAETEERY 254
|
250 260 270
....*....|....*....|....*....|....
gi 296439355 277 EHRgrkisdlkkyAQKLKERIQDLDVQLKEARQE 310
Cdd:pfam00038 255 ELQ----------LADYQELISELEAELQETRQE 278
|
|
| ClyA_Cry6Aa-like |
cd22656 |
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ... |
404-491 |
7.83e-03 |
|
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.
Pssm-ID: 439154 [Multi-domain] Cd Length: 309 Bit Score: 39.66 E-value: 7.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 404 QQYEEDLRKIKHQTEEEKKHLkDQLVKRLEDLVKKHtveiksVRSSVEAERKKLQREVEAQLEEVRKKSEKEIKQLEEEK 483
Cdd:cd22656 138 AKVVDKLTDFENQTEKDQTAL-ETLEKALKDLLTDE------GGAIARKEIKDLQKELEKLNEEYAAKLKAKIDELKALI 210
|
....*...
gi 296439355 484 AALNVKLQ 491
Cdd:cd22656 211 ADDEAKLA 218
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
667-892 |
8.15e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.00 E-value: 8.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 667 LRMLEKARHQELKATEERLKKESshslqiqhQTHRLELQALEEKARQELQEERERMQAQQALLLESLRQELSEQQAAcsg 746
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQL--------PELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAE--- 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 747 HQKDLEALQAELRALGRQqassqcpgdskdhiIATEERGGPGQAGSPpgaagqgsgegcglweenaqlqdAVRRLRAEVE 826
Cdd:COG3206 231 ARAELAEAEARLAALRAQ--------------LGSGPDALPELLQSP-----------------------VIQQLRAQLA 273
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 296439355 827 QHQQEAQKLRdqRRFLEETQQAQRAR-EVETLRQEHRKEMQAMVADFSSAQAQLQARLAALEAELKD 892
Cdd:COG3206 274 ELEAELAELS--ARYTPNHPDVIALRaQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQ 338
|
|
| HlpA |
COG2825 |
Periplasmic chaperone for outer membrane proteins, Skp family [Cell wall/membrane/envelope ... |
809-890 |
8.74e-03 |
|
Periplasmic chaperone for outer membrane proteins, Skp family [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 442073 [Multi-domain] Cd Length: 171 Bit Score: 38.28 E-value: 8.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 296439355 809 EENAQLQDAVRRLRAEVEQHQQEAQKLRDQRRFLEETQQAQRAREVETLRQEHRKEMQAMVADFSSAQAQLQARLAALEA 888
Cdd:COG2825 36 QESPEGKAAQKKLEKEFKKRQAELQKLEKELQALQEKLQKEAATLSEEERQKKERELQKKQQELQRKQQEAQQDLQKRQQ 115
|
..
gi 296439355 889 EL 890
Cdd:COG2825 116 EL 117
|
|
| |
