|
Name |
Accession |
Description |
Interval |
E-value |
| malF |
PRK10999 |
maltose ABC transporter permease MalF; |
1-514 |
0e+00 |
|
maltose ABC transporter permease MalF;
Pssm-ID: 236816 [Multi-domain] Cd Length: 520 Bit Score: 1065.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 1 MDVIKKKRWWQSDALKWSAIGLLCLLVGYLVVLMYVQGEYLFAIMTLILSSAGLYIFANRKAYAWRYVYPGVAGMGLFVL 80
Cdd:PRK10999 4 MDVIKKKHWWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAILTLILSSLGLYIFANRKAYAWRYVYPGLAGMGLFVL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 81 FPLICTVAIAFTNYSSTNQLAQERAQQVLLDRSYQAGKTFNFGLYPAGNEWKLALTDEASGKYYVSDAFKF--GGEQKLA 158
Cdd:PRK10999 84 FPLVCTIAIAFTNYSSTNQLTFERAQSVLLDRTYQAGKTYNFGLYPAGDEWQLALTDGETGKNYLSEPFSLeaGGEQKLQ 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 159 LKEAQALPEGERANLRVITQNRQALTQLTAVLPDDSKVIMSSLRQFSGTQPLYTLADDG-TLTNNQSGVKYRPNNDIGFY 237
Cdd:PRK10999 164 LKETDALPEGERAPLRVITQNRQALSQITAVLPDGNKLRMSSLRQFSGTKPLYTLDDDGtTLTNNQSGVKYRPNNDIGFY 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 238 QSITADGKWGDDKLSPGYTVTIGWDNFTRVFTDEGIQKPFFAIFVWTVVFSVLTVILTVAVGMVLACLVQWESLKGKAIY 317
Cdd:PRK10999 244 QSINADGNWGGEKLSPGFTVTIGWKNFTRVFTDEGIQKPFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQWEALKGKAVY 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 318 RVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFSDPTTARSMIIIVNTWLGYPYMMILCMGLLKAIPD 397
Cdd:PRK10999 324 RVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPD 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 398 DLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVSYTYRIAFE 477
Cdd:PRK10999 404 DLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDMIGTTTPAGYTDLLVSYTYRIAFE 483
|
490 500 510
....*....|....*....|....*....|....*..
gi 1608446719 478 GGGGQDFGLAAAIATLIFLLVGALAIVNLKATRMKFD 514
Cdd:PRK10999 484 GGGGQDFGLAAAIATLIFLLVGALAILNLKATKMKFD 520
|
|
| MalF_P2 |
pfam14785 |
Maltose transport system permease protein MalF P2 domain; This is the second periplasmic ... |
100-260 |
4.97e-86 |
|
Maltose transport system permease protein MalF P2 domain; This is the second periplasmic domain (P2 domain) of the maltose transport system permease protein MalF.
Pssm-ID: 434209 Cd Length: 164 Bit Score: 262.19 E-value: 4.97e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 100 LAQERAQQVLLDRSYQAGKTFNFGLYPAGNEWKLALTDEASGKYYVSDAFKF--GGEQKLALKEAQALPEGERANLRVIT 177
Cdd:pfam14785 1 LSFERAQSVLLSRTYQSGESYPFTLYPSGDGYRLALEDGESGQLLVSEPFTLdgAGEQKLALEPAESLPTGEKAPLREIT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 178 QNRQALTQLTAVLPDDSKVIMSSLRQFSGTQPLYTLADDG-TLTNNQSGVKYRPNNDIGFYQSITADGKWGDDKLSPGYT 256
Cdd:pfam14785 81 QNRQALSQLVLVLPDGEELRMSGLRQFAAVKPLYTLQEDGeTLTNNQTGEIYRPNMEIGFYQAVDEDGEWVGERVSPGFT 160
|
....
gi 1608446719 257 VTIG 260
Cdd:pfam14785 161 VTIG 164
|
|
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
259-510 |
2.36e-65 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 213.84 E-value: 2.36e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 259 IGWDNFTRVFTDEGiqkpFFAIFVWTVVFSVLTVILTVAVGMVLACLVqWESLKGKAIYRVLLILPYAVPSFISILIFKG 338
Cdd:COG1175 60 VGLDNYARLFTDPR----FWNALGNTLLFTVVSVPLQLVLGLLLALLL-NRKLRGRGFFRTLFFLPWVISPVVVALIWKW 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 339 LFNQSFGEINMMLSALFGIKPAWFSDPTTARSMIIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKIT 418
Cdd:COG1175 135 LFNPDYGLLNALLGALGLEPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRIT 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 419 LPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGpdrlgtttPAGYTDLLVSYTYRIAFEgggGQDFGLAAAIATLIFLLV 498
Cdd:COG1175 215 LPLLRPTILFVLVLSTIGALQVFDLVYVLTGGG--------PGNSTTTLVLYIYQTAFQ---QFDFGYASAIAVVLFLII 283
|
250
....*....|..
gi 1608446719 499 GALAIVNLKATR 510
Cdd:COG1175 284 LVLTLLQLRLLR 295
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
281-498 |
3.82e-21 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 91.19 E-value: 3.82e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 281 FVWTVVFSVLTVILTVAVGMVLACLVQWESLKGKAIYRVLLILPYAVPSFISILIfkglfnqsfgeinmmLSALFGIKPA 360
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLL---------------LVLLFGVLLG 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 361 WFSDPTTARSMIIIVNTWLGyPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNN 440
Cdd:cd06261 66 WGILPGLGLPALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGE 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1608446719 441 FVLIQLLTNGGPDRLGTTTpagytdllvsytyRIAFEGGGGQDFGLAAAIATLIFLLV 498
Cdd:cd06261 145 FALVSFLGGGEAPGPGTGL-------------LLIFAILFPGDLGVAAAVALILLLLS 189
|
|
| Mo_ABC_porter |
TIGR01581 |
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ... |
260-435 |
3.49e-10 |
|
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.
Pssm-ID: 130643 Cd Length: 225 Bit Score: 60.10 E-value: 3.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 260 GWDNFTRVFTDEGIqkpFFAIFVwTVVFSVLTVILTVAVGMVLACLVQWESLKGKAIYRVLLILPYAVPSFISILIFKGL 339
Cdd:TIGR01581 6 GGSHILSALTDPEN---IKALRL-SLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 340 FNqSFGEINMMLSALfGIKPAwFSdpTTArsmIIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITL 419
Cdd:TIGR01581 82 FG-RNGLLGPYLEAA-GIQVI-FS--TLG---VVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITL 153
|
170
....*....|....*.
gi 1608446719 420 PLLIKPLTPLMIASFA 435
Cdd:TIGR01581 154 PMARPGLLAGLVLAWA 169
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| malF |
PRK10999 |
maltose ABC transporter permease MalF; |
1-514 |
0e+00 |
|
maltose ABC transporter permease MalF;
Pssm-ID: 236816 [Multi-domain] Cd Length: 520 Bit Score: 1065.34 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 1 MDVIKKKRWWQSDALKWSAIGLLCLLVGYLVVLMYVQGEYLFAIMTLILSSAGLYIFANRKAYAWRYVYPGVAGMGLFVL 80
Cdd:PRK10999 4 MDVIKKKHWWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAILTLILSSLGLYIFANRKAYAWRYVYPGLAGMGLFVL 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 81 FPLICTVAIAFTNYSSTNQLAQERAQQVLLDRSYQAGKTFNFGLYPAGNEWKLALTDEASGKYYVSDAFKF--GGEQKLA 158
Cdd:PRK10999 84 FPLVCTIAIAFTNYSSTNQLTFERAQSVLLDRTYQAGKTYNFGLYPAGDEWQLALTDGETGKNYLSEPFSLeaGGEQKLQ 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 159 LKEAQALPEGERANLRVITQNRQALTQLTAVLPDDSKVIMSSLRQFSGTQPLYTLADDG-TLTNNQSGVKYRPNNDIGFY 237
Cdd:PRK10999 164 LKETDALPEGERAPLRVITQNRQALSQITAVLPDGNKLRMSSLRQFSGTKPLYTLDDDGtTLTNNQSGVKYRPNNDIGFY 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 238 QSITADGKWGDDKLSPGYTVTIGWDNFTRVFTDEGIQKPFFAIFVWTVVFSVLTVILTVAVGMVLACLVQWESLKGKAIY 317
Cdd:PRK10999 244 QSINADGNWGGEKLSPGFTVTIGWKNFTRVFTDEGIQKPFIAIFIWTVVFSLLTVVLTVAVGMVLACLVQWEALKGKAVY 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 318 RVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFSDPTTARSMIIIVNTWLGYPYMMILCMGLLKAIPD 397
Cdd:PRK10999 324 RVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGIKPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPD 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 398 DLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVSYTYRIAFE 477
Cdd:PRK10999 404 DLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDMIGTTTPAGYTDLLVSYTYRIAFE 483
|
490 500 510
....*....|....*....|....*....|....*..
gi 1608446719 478 GGGGQDFGLAAAIATLIFLLVGALAIVNLKATRMKFD 514
Cdd:PRK10999 484 GGGGQDFGLAAAIATLIFLLVGALAILNLKATKMKFD 520
|
|
| MalF_P2 |
pfam14785 |
Maltose transport system permease protein MalF P2 domain; This is the second periplasmic ... |
100-260 |
4.97e-86 |
|
Maltose transport system permease protein MalF P2 domain; This is the second periplasmic domain (P2 domain) of the maltose transport system permease protein MalF.
Pssm-ID: 434209 Cd Length: 164 Bit Score: 262.19 E-value: 4.97e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 100 LAQERAQQVLLDRSYQAGKTFNFGLYPAGNEWKLALTDEASGKYYVSDAFKF--GGEQKLALKEAQALPEGERANLRVIT 177
Cdd:pfam14785 1 LSFERAQSVLLSRTYQSGESYPFTLYPSGDGYRLALEDGESGQLLVSEPFTLdgAGEQKLALEPAESLPTGEKAPLREIT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 178 QNRQALTQLTAVLPDDSKVIMSSLRQFSGTQPLYTLADDG-TLTNNQSGVKYRPNNDIGFYQSITADGKWGDDKLSPGYT 256
Cdd:pfam14785 81 QNRQALSQLVLVLPDGEELRMSGLRQFAAVKPLYTLQEDGeTLTNNQTGEIYRPNMEIGFYQAVDEDGEWVGERVSPGFT 160
|
....
gi 1608446719 257 VTIG 260
Cdd:pfam14785 161 VTIG 164
|
|
| UgpA |
COG1175 |
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; |
259-510 |
2.36e-65 |
|
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440788 [Multi-domain] Cd Length: 298 Bit Score: 213.84 E-value: 2.36e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 259 IGWDNFTRVFTDEGiqkpFFAIFVWTVVFSVLTVILTVAVGMVLACLVqWESLKGKAIYRVLLILPYAVPSFISILIFKG 338
Cdd:COG1175 60 VGLDNYARLFTDPR----FWNALGNTLLFTVVSVPLQLVLGLLLALLL-NRKLRGRGFFRTLFFLPWVISPVVVALIWKW 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 339 LFNQSFGEINMMLSALFGIKPAWFSDPTTARSMIIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKIT 418
Cdd:COG1175 135 LFNPDYGLLNALLGALGLEPINWLGDPSLALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRIT 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 419 LPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGpdrlgtttPAGYTDLLVSYTYRIAFEgggGQDFGLAAAIATLIFLLV 498
Cdd:COG1175 215 LPLLRPTILFVLVLSTIGALQVFDLVYVLTGGG--------PGNSTTTLVLYIYQTAFQ---QFDFGYASAIAVVLFLII 283
|
250
....*....|..
gi 1608446719 499 GALAIVNLKATR 510
Cdd:COG1175 284 LVLTLLQLRLLR 295
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
257-510 |
5.39e-27 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 114.49 E-value: 5.39e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 257 VTIGWDNFTRVFTDEGiqkpFFAIFVWTVVFSVLTVILTVAVGMVLACLVQWESLKGKAIYRVLLILPYAVPSFISILIF 336
Cdd:COG1178 36 FTDGLANFWALLSDPY----LWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAW 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 337 KGLFNQSfGEINMMLSALFGIKPAWFsdpttaRSM--IIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNF 414
Cdd:COG1178 112 IALFGPN-GLLNTLLRALFGLEPPDI------YGLggIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAF 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 415 FKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLtnggpdRLGTTTpagytdllvsYTYRIAFEGGGGQDFGLAAAIATLI 494
Cdd:COG1178 185 RRVTLPLLRPAIAAGALLVFLLCLADFGTPLVL------GGGYTT----------LTTAIYQAWLGDFDLGAAAALALVL 248
|
250
....*....|....*.
gi 1608446719 495 FLLVGALAIVNLKATR 510
Cdd:COG1178 249 LLLVLLLLLLERRLRR 264
|
|
| PRK10561 |
PRK10561 |
sn-glycerol-3-phosphate ABC transporter permease UgpA; |
259-512 |
3.92e-23 |
|
sn-glycerol-3-phosphate ABC transporter permease UgpA;
Pssm-ID: 182550 [Multi-domain] Cd Length: 280 Bit Score: 99.13 E-value: 3.92e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 259 IGWDNFTRVFTDEgiqkPFFAIFVWTVVFSVLTVILTVAVGMVLACLVQWeSLKGKAIYRVLLILPYAVPSFISILIFKG 338
Cdd:PRK10561 39 VGLDNFVALFHDS----YYLDSFWTTIKFSTLVTVSGLLVSLFFAALVDY-VVRGSRFYQTLMLLPYAVAPAVAAVLWIF 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 339 LFNQSFGEINMMLsALFGIKPAWFSDPTTARSMIIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKIT 418
Cdd:PRK10561 114 LFNPGRGLITHFL-AEFGYDWNHAQNSGQAMFLVVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFKLA 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 419 LPlLIKPLTPLMIA---SFAFnFNNFVLIQLLTNGGPDRLGTTtpagytdllvsYTYRIAFEGGGGQDFGLAAAIATLIF 495
Cdd:PRK10561 193 LP-LIAPVSFFLLVvnlVYAF-FDTFPVIDAATSGGPVQATTT-----------LIYKIYREGFTGLDLSSSAAQSVVLM 259
|
250
....*....|....*..
gi 1608446719 496 LLVGALAIVNLKATRMK 512
Cdd:PRK10561 260 FLVIVLTVVQFRYVESK 276
|
|
| LplB |
COG4209 |
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ... |
259-504 |
3.23e-22 |
|
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443357 [Multi-domain] Cd Length: 316 Bit Score: 97.08 E-value: 3.23e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 259 IGWDNFTRVFTDEGiqkpFFAIFVWTVVFSVLTVILTVAVGMVLA-CLVQWESLKGKAIYRVLLILPYavpsFISIL--- 334
Cdd:COG4209 70 VGLKNFKFLFSSPD----FWRVLRNTLLISLLKLVFGFPLPIILAlLLNELRSKRFKKTVQTISYLPH----FLSWVvva 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 335 -IFKGLFNQSFGEINMMLSAlFGIKP-AWFSDPTTARSMIIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQ 412
Cdd:COG4209 142 gIVYQFLSPDTGLVNQLLRA-LGGEPiNFLTEPKYFRPIYVFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQ 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 413 NFFKITLPLLIKPLTPLMIASFAFNFN-NFVLIQLLTNggpdrlgtttPAGY--TDLLVSYTYRIAFEGGggqDFGLAAA 489
Cdd:COG4209 221 QIWHITLPGIRPTIVILLILNIGNILNvGFEQIYLLYN----------PLNYstSDVIDTYVYRIGLQNG---DYSYATA 287
|
250 260
....*....|....*....|
gi 1608446719 490 IATL-----IFLLVGALAIV 504
Cdd:COG4209 288 VGLFksvvgLILVLIANKIA 307
|
|
| TM_PBP2 |
cd06261 |
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ... |
281-498 |
3.82e-21 |
|
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.
Pssm-ID: 119394 [Multi-domain] Cd Length: 190 Bit Score: 91.19 E-value: 3.82e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 281 FVWTVVFSVLTVILTVAVGMVLACLVQWESLKGKAIYRVLLILPYAVPSFISILIfkglfnqsfgeinmmLSALFGIKPA 360
Cdd:cd06261 1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLL---------------LVLLFGVLLG 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 361 WFSDPTTARSMIIIVNTWLGyPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNN 440
Cdd:cd06261 66 WGILPGLGLPALILALLLIA-PFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGE 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1608446719 441 FVLIQLLTNGGPDRLGTTTpagytdllvsytyRIAFEGGGGQDFGLAAAIATLIFLLV 498
Cdd:cd06261 145 FALVSFLGGGEAPGPGTGL-------------LLIFAILFPGDLGVAAAVALILLLLS 189
|
|
| PotB |
COG1176 |
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ... |
254-510 |
8.49e-20 |
|
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];
Pssm-ID: 440789 [Multi-domain] Cd Length: 287 Bit Score: 89.44 E-value: 8.49e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 254 GYTVTIGWDNFTRVFTDEGiqkpFFAIFVWTVVFSVLTVILTVAVGMVLACLVQWESLKGKAIYRVLLILPYAVPSFISI 333
Cdd:COG1176 46 GVVPGFTLENYARLFTDPL----YLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRT 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 334 LIFKGLFNQSfGEINMMLSALfGIKPAWFSDPTTARSMII-IVNTWLgyPYMMILCMGLLKAIPDDLYEASAMDGAGPFQ 412
Cdd:COG1176 122 YAWIVLLGRN-GLLNSLLLAL-GLIDEPLRLLYTEFAVVIgLVYVYL--PFMVLPLYAALEKIDPSLLEAARDLGASPWQ 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 413 NFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLtnGGPDR--LGTTtpagytdllvsytyrIAFEGGGGQDFGLAAAI 490
Cdd:COG1176 198 TFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALL--GGGKVlmIGNL---------------IYQQFLSALNWPLAAAL 260
|
250 260
....*....|....*....|
gi 1608446719 491 ATLIFLLVGALAIVNLKATR 510
Cdd:COG1176 261 AVVLLLIVLLVLLLYLRLLR 280
|
|
| PotC |
COG1177 |
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ... |
251-510 |
8.97e-19 |
|
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];
Pssm-ID: 440790 [Multi-domain] Cd Length: 262 Bit Score: 85.93 E-value: 8.97e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 251 LSPGYTVTIGWDNFT-----RVFTDEGiqkpFFAIFVWTVVFSVLTVILTVAVGMVLACLVQWESLKGKAIYRVLLILPY 325
Cdd:COG1177 32 FNDSWFLTFPPEGFTlrwyaELFSDPR----LLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPL 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 326 AVPSFI---SILIFkglfnqsFGEINMMLSALFgikpawfsdpttarsmIIIVNTWLGYPYMMILCMGLLKAIPDDLYEA 402
Cdd:COG1177 108 VVPGIVlgvALLLL-------FSALGLSGGLWG----------------LILAHVVFTLPFVVLVVLARLQGFDPSLEEA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 403 SAMDGAGPFQNFFKITLPLlikpLTPLMIA----SFAFNFNNFVLIQLLTNGGPdrlgTTTPagyTDLLVSYTYRIAFEg 478
Cdd:COG1177 165 ARDLGASPWQTFRRVTLPL----IAPGILAgallAFTLSFDEFVITLFLAGPGV----TTLP---VYIYSMIRRGISPE- 232
|
250 260 270
....*....|....*....|....*....|..
gi 1608446719 479 gggqdfglAAAIATLIFLLVGALAIVNLKATR 510
Cdd:COG1177 233 --------INALSTLLILLSLLLLLLAERLRR 256
|
|
| FbpB |
COG1178 |
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]; |
251-504 |
5.82e-15 |
|
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
Pssm-ID: 440791 [Multi-domain] Cd Length: 538 Bit Score: 77.51 E-value: 5.82e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 251 LSPGYTVTIGWDNFTRVFTDEGIQKPFFaifvWTVVFSVLTVILTVAVGMVLACLVQWESLKGKAIYRVLLILPYAVPSF 330
Cdd:COG1178 314 LTKALDDNLTLDNYRFVLLDPSLLRALL----NSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGI 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 331 ---ISILIFkglFNQSFGeinMMLSALFGIkpawfsdpttarsmIIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDG 407
Cdd:COG1178 390 vlgLGLLLL---FNRPLP---LLLYGTLAI--------------LVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLG 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 408 AGPFQNFFKITLPLLIKPLtplmIASFAFNF----NNFVLIQLLTNGGpdrlgtttpagyTDLLVSYTYRIAFEGgggqD 483
Cdd:COG1178 450 ASPLRTLRRVTLPLLRPGL----LAAALLVFvtsmKELSATLLLRPPG------------FETLAVLIYQLASSG----R 509
|
250 260
....*....|....*....|.
gi 1608446719 484 FGLAAAIATLIFLLVGALAIV 504
Cdd:COG1178 510 YGEAAALALLLVLVSLLPVLL 530
|
|
| UgpE |
COG0395 |
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ... |
261-496 |
1.06e-12 |
|
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440164 [Multi-domain] Cd Length: 282 Bit Score: 68.58 E-value: 1.06e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 261 WDNFTRVFTDEgiqkPFFAIFVWTVVFSVLTVILTVAVGMVLACLVQWESLKGKAIYRVLLILPYAVPsFISILIfkGLF 340
Cdd:COG0395 60 LENYRAAFTDG----PFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIP-GQVLLI--PLY 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 341 nQSFGEINMmLSALFGIkpawfsdpttarsmiIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLP 420
Cdd:COG0395 133 -LLFRQLGL-LNTYWGL---------------ILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLP 195
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1608446719 421 LLIKPLTPLMIASFAFNFNNFVLIQLLTNggpdrlgttTPAGYTdllvsYTYRIA-FEGGGGQDFGLAAAIATLIFL 496
Cdd:COG0395 196 LSKPALATVAIFTFIGAWNDFLWPLILLT---------SPDLRT-----LPVGLAsFQGQYGTDWGLLMAAAVIATL 258
|
|
| BPD_transp_1 |
pfam00528 |
Binding-protein-dependent transport system inner membrane component; The alignments cover the ... |
312-506 |
1.25e-12 |
|
Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.
Pssm-ID: 334128 [Multi-domain] Cd Length: 183 Bit Score: 66.17 E-value: 1.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 312 KGKAIYRVLLILPYAVPSFISILIFkglfnqsfgeinmmlsalfgIKPAWFSDPTTARSMIIIVNTWLGYPYMMILCMGL 391
Cdd:pfam00528 15 RLDRLLRPLIDLLQALPSFVLAILL--------------------VVIAILSILGHGILPAIILALLGWAGYARLIRRAA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 392 LKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGPDrlgtttpaGYTDLLVSYT 471
Cdd:pfam00528 75 LRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLGSWPGL--------GLLLIEAILG 146
|
170 180 190
....*....|....*....|....*....|....*
gi 1608446719 472 YRIAFegggGQDFGLAAAIATLIFLLVGALAIVNL 506
Cdd:pfam00528 147 YDYPE----IQGPVLAAALILLLLNLLVDILQRLL 177
|
|
| Mo_ABC_porter |
TIGR01581 |
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ... |
260-435 |
3.49e-10 |
|
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.
Pssm-ID: 130643 Cd Length: 225 Bit Score: 60.10 E-value: 3.49e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 260 GWDNFTRVFTDEGIqkpFFAIFVwTVVFSVLTVILTVAVGMVLACLVQWESLKGKAIYRVLLILPYAVPSFISILIFKGL 339
Cdd:TIGR01581 6 GGSHILSALTDPEN---IKALRL-SLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 340 FNqSFGEINMMLSALfGIKPAwFSdpTTArsmIIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITL 419
Cdd:TIGR01581 82 FG-RNGLLGPYLEAA-GIQVI-FS--TLG---VVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITL 153
|
170
....*....|....*.
gi 1608446719 420 PLLIKPLTPLMIASFA 435
Cdd:TIGR01581 154 PMARPGLLAGLVLAWA 169
|
|
| MalG |
COG3833 |
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ... |
258-447 |
3.45e-09 |
|
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];
Pssm-ID: 443045 [Multi-domain] Cd Length: 282 Bit Score: 57.85 E-value: 3.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 258 TIGWDNFTRVFTdegiQKPFFAIFVWTVVFSVLTVILTVAVGM----VLACLvqweSLKG-KAIYRVLLILPyAVPSFIS 332
Cdd:COG3833 56 NFTLENYKKLFT----ETPFLRWFLNSLIVAVVTAIISVFLAAlaayAFSRF----RFKGrKAGLLALLLLQ-MFPAFLA 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 333 I----LIFK--GLFNQSFGEINMMLSALfgikpawfsdpttarsmiIIVNTWLGYPYMmilcmgllKAIPDDLYEASAMD 406
Cdd:COG3833 127 LvalyLLLSalGLLNTLLGLILVYLGGA------------------IPFNTWLMKGYF--------DTIPKELDEAAKID 180
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1608446719 407 GAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLL 447
Cdd:COG3833 181 GASHFQIFFRIILPLAKPILAVVALLSFIGPWNDFILASVL 221
|
|
| PhnU2 |
TIGR03262 |
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ... |
259-501 |
1.86e-08 |
|
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 274495 [Multi-domain] Cd Length: 546 Bit Score: 57.00 E-value: 1.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 259 IGWDNFTRVFTDEGiqkpFFAIFVWTVVFSVLTVILTVAVGMVLACLVQWESLKGKAIYRVLLILPYAVPSFIS----IL 334
Cdd:TIGR03262 38 IGLANFAEYFATPG----LLQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPaislIY 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 335 IF--KGLFNQSFGeinmmlsaLFGIKPAWfsdpttarsMIIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQ 412
Cdd:TIGR03262 114 LFgnQGLLKGLLG--------GFSIYGFW---------GIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWR 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 413 NFFKITLPLLIKPLTPLMIASFAFNFNNFvliqlltnGGPDRLGTTTPAGYTDLlvsYTYRIafeggGGQDFGLAAAIAT 492
Cdd:TIGR03262 177 TFFTVTLPGAKYGLISAAFVVFTLVITDF--------GVPKVIGGDYNVLATDI---YKQVI-----GQQNFPMGAVVGV 240
|
....*....
gi 1608446719 493 LifLLVGAL 501
Cdd:TIGR03262 241 L--LLLPAL 247
|
|
| PRK10973 |
PRK10973 |
sn-glycerol-3-phosphate ABC transporter permease UgpE; |
395-458 |
9.51e-04 |
|
sn-glycerol-3-phosphate ABC transporter permease UgpE;
Pssm-ID: 182875 [Multi-domain] Cd Length: 281 Bit Score: 41.26 E-value: 9.51e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1608446719 395 IPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNGGpdRLGTT 458
Cdd:PRK10973 169 LPDELVEAARIDGASPMRFFWDIVLPLSKTNLAALFVITFIYGWNQYLWPLLIITDV--SLGTA 230
|
|
| potB |
PRK09497 |
spermidine/putrescine ABC transporter membrane protein; Reviewed |
255-421 |
3.50e-03 |
|
spermidine/putrescine ABC transporter membrane protein; Reviewed
Pssm-ID: 181910 Cd Length: 285 Bit Score: 39.29 E-value: 3.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 255 YTVTIGWDNFTRVFtdegiqKPFFAIFVW-TVVFSVLTVILTVAVGMVLACLVQWESLKGKAIYRVLLILPYAVPSFISI 333
Cdd:PRK09497 44 VKMVFTLDNYTRLL------DPLYAEVLLhSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRI 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1608446719 334 LIFKgLFNQSFGEINMMLSALFGI-KPAWFSDPTTArsmIIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQ 412
Cdd:PRK09497 118 YGLK-IFLSTKGYLNEFLLWLGVIdTPIRIMFTESA---VIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQ 193
|
....*....
gi 1608446719 413 NFFKITLPL 421
Cdd:PRK09497 194 TFIRIIIPL 202
|
|
| |
