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Conserved domains on  [gi|1633226921|gb|QCJ46597|]
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sugar ABC transporter permease [Haloprofundus sp. MHR1]

Protein Classification

carbohydrate ABC transporter permease( domain architecture ID 10003067)

carbohydrate ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter responsible for the translocation across the membrane of one or more from a variety of carbohydrate substrates including trehalose, lactose, arabinose, and maltodextrin

Gene Ontology:  GO:0042626|GO:0140359|GO:0008643|GO:0055085
PubMed:  25750732|24638992|30626703
TCDB:  3.A.1.1.-

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
49-329 1.99e-60

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


:

Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 195.74  E-value: 1.99e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921  49 VIAVYPLVTTFWMSLFADALSGSAnlGQFVGINNYVELLTNQRsyalpsafmptsltpngiFASALGVTLIFTFVSVFFE 128
Cdd:COG1175    33 VFVLYPLLYTLYLSFTDWNLLGPP--PEFVGLDNYARLFTDPR------------------FWNALGNTLLFTVVSVPLQ 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 129 TIIGFGQALVLDQEFRGRRWVRVAIIIPWAVPIVIQGMIFYLLFQPGIGfligtsdnptLLNQ-LTWIGTTP---LANTV 204
Cdd:COG1175    93 LVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYG----------LLNAlLGALGLEPinwLGDPS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 205 DATTIIIVADIWKTSAFMALLILAGLQSIDRSLYDVAKVAGASKWQQFKMITLPLIMPTVLVAMLFRTIAAMRVYGIIET 284
Cdd:COG1175   163 LALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYV 242

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1633226921 285 TSACTTVPSLSCLVV----TSFNQRAYGTAASVAFITAAIIGIAVSVYI 329
Cdd:COG1175   243 LTGGGPGNSTTTLVLyiyqTAFQQFDFGYASAIAVVLFLIILVLTLLQL 291
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
49-329 1.99e-60

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 195.74  E-value: 1.99e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921  49 VIAVYPLVTTFWMSLFADALSGSAnlGQFVGINNYVELLTNQRsyalpsafmptsltpngiFASALGVTLIFTFVSVFFE 128
Cdd:COG1175    33 VFVLYPLLYTLYLSFTDWNLLGPP--PEFVGLDNYARLFTDPR------------------FWNALGNTLLFTVVSVPLQ 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 129 TIIGFGQALVLDQEFRGRRWVRVAIIIPWAVPIVIQGMIFYLLFQPGIGfligtsdnptLLNQ-LTWIGTTP---LANTV 204
Cdd:COG1175    93 LVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYG----------LLNAlLGALGLEPinwLGDPS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 205 DATTIIIVADIWKTSAFMALLILAGLQSIDRSLYDVAKVAGASKWQQFKMITLPLIMPTVLVAMLFRTIAAMRVYGIIET 284
Cdd:COG1175   163 LALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYV 242

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1633226921 285 TSACTTVPSLSCLVV----TSFNQRAYGTAASVAFITAAIIGIAVSVYI 329
Cdd:COG1175   243 LTGGGPGNSTTTLVLyiyqTAFQQFDFGYASAIAVVLFLIILVLTLLQL 291
malF PRK10999
maltose ABC transporter permease MalF;
117-262 2.56e-13

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 70.37  E-value: 2.56e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 117 TLIFTFVSVFFETIIGFGQALVLDQE-FRGRRWVRVAIIIPWAVPIVIQGMIFYLLFQPGIGFLigtsdNpTLLNQLTWI 195
Cdd:PRK10999  290 TVVFSLLTVVLTVAVGMVLACLVQWEaLKGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEI-----N-MMLSALFGI 363

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1633226921 196 GTTPLANTVDATTIIIVADIWKTSAFMALLILAGLQSIDRSLYDVAKVAGASKWQQFKMITLPLIMP 262
Cdd:PRK10999  364 KPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIK 430
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 114-321 1.49e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 65.38  E-value: 1.49e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 114 LGVTLIFTFVSVFFETIIGFGQALVLDQ-EFRGRRWVRVAIIIPWAVPIVIQGMIFYLLFQPGIGFLIGTSDnptllnql 192
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARkRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGL-------- 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 193 twigttplantvdATTIIIVADIWkTSAFMALLILAGLQSIDRSLYDVAKVAGASKWQQFKMITLPLIMPTVLVAMLFRT 272
Cdd:cd06261    73 -------------GLPALILALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAF 138

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1633226921 273 IAAMRVYGIIETT--SACTTVPSLSCLVVTSFNQRAYGTAASVAFITAAII 321
Cdd:cd06261   139 ARALGEFALVSFLggGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 143-330 1.52e-08

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 53.84  E-value: 1.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 143 FRGRRWVRVAIIIPWAVPIVIQGMIFYLLFQpgigfligtsdnptllnqLTWIGTTPLAntvdattiIIVADIWKTSAFM 222
Cdd:pfam00528  14 RRLDRLLRPLIDLLQALPSFVLAILLVVIAI------------------LSILGHGILP--------AIILALLGWAGYA 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 223 ALLILAGLQSIDRSLYDVAKVAGASKWQQFKMITLPLIMPTVLVAMLFRTIAAMRVYGIIETTsacTTVPSLSCLVVTSF 302
Cdd:pfam00528  68 RLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL---GSWPGLGLLLIEAI 144

                         170       180
                  ....*....|....*....|....*....
gi 1633226921 303 NQRAYG-TAASVAFITAAIIGIAVSVYIV 330
Cdd:pfam00528 145 LGYDYPeIQGPVLAAALILLLLNLLVDIL 173
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 75-258 5.30e-05

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 44.67  E-value: 5.30e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921  75 GQFVGINNYVELLTNqrsyalpSAFMPTsltpngiFASALGVTLIFTFVSVFfetiIGFGQALVLDQE-FRGRRWVRVAI 153
Cdd:TIGR03262  35 GDFIGLANFAEYFAT-------PGLLQS-------LGNSLTVSAIVTAIVVP----LAFAFAYALTRSrIPGKGAFRLVA 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 154 IIPWAVPIVIQGMIFYLLFqpgigfligtsDNPTLLNQLTwigttpLANTVDATTIIIVADIWKTSAFMALLILAGLQSI 233
Cdd:TIGR03262  97 LLPLLAPSLLPAISLIYLF-----------GNQGLLKGLL------GGFSIYGFWGIVIGEVFYTFPHALMILVTALSLA 159

                         170       180
                  ....*....|....*....|....*
gi 1633226921 234 DRSLYDVAKVAGASKWQQFKMITLP 258
Cdd:TIGR03262 160 DGRLYEAARAMGASPWRTFFTVTLP 184
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 114-250 1.75e-03

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 38.68  E-value: 1.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 114 LGVTLIFTFVSVFFETIIGFGQALvldQEFRGRRWVRVAIIIPWAVPIVIQGMIFYLLF--QPGIGFLigtsdnpTLLnq 191
Cdd:NF038017    2 LRVSGTATLIAALIGIPLGALLAL---RRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLsrSGPLGFL-------GLL-- 69

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1633226921 192 ltwigTTPLAntvdattiIIVADIWKTSAFMALLILAGLQSIDRSLYDVAKVAGASKWQ 250
Cdd:NF038017   70 -----YTPTA--------MIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQ 115
 
Name Accession Description Interval E-value
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
49-329 1.99e-60

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 195.74  E-value: 1.99e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921  49 VIAVYPLVTTFWMSLFADALSGSAnlGQFVGINNYVELLTNQRsyalpsafmptsltpngiFASALGVTLIFTFVSVFFE 128
Cdd:COG1175    33 VFVLYPLLYTLYLSFTDWNLLGPP--PEFVGLDNYARLFTDPR------------------FWNALGNTLLFTVVSVPLQ 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 129 TIIGFGQALVLDQEFRGRRWVRVAIIIPWAVPIVIQGMIFYLLFQPGIGfligtsdnptLLNQ-LTWIGTTP---LANTV 204
Cdd:COG1175    93 LVLGLLLALLLNRKLRGRGFFRTLFFLPWVISPVVVALIWKWLFNPDYG----------LLNAlLGALGLEPinwLGDPS 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 205 DATTIIIVADIWKTSAFMALLILAGLQSIDRSLYDVAKVAGASKWQQFKMITLPLIMPTVLVAMLFRTIAAMRVYGIIET 284
Cdd:COG1175   163 LALPAVIIVTVWKGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYV 242

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 1633226921 285 TSACTTVPSLSCLVV----TSFNQRAYGTAASVAFITAAIIGIAVSVYI 329
Cdd:COG1175   243 LTGGGPGNSTTTLVLyiyqTAFQQFDFGYASAIAVVLFLIILVLTLLQL 291
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 54-270 1.35e-17

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 80.93  E-value: 1.35e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921  54 PLVTTFWMSlFADALSGSANLGQFvGINNYVELLTNQRsyalpsafmptsltpngiFASALGVTLIFTFVSVFFETIIGF 133
Cdd:COG1177    23 PILVLVLYS-FNDSWFLTFPPEGF-TLRWYAELFSDPR------------------LLDALLNSLLIALLSTLLATVLGT 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 134 GQALVLDQ-EFRGRRWVRVAIIIPWAVPIVIQGMIFYLLFqpgigfligtsdnptllNQLTWIGTTplantvdatTIIIV 212
Cdd:COG1177    83 PAALALARyRFRGRRLLLALLLLPLVVPGIVLGVALLLLF-----------------SALGLSGGL---------WGLIL 136

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1633226921 213 ADIWKTSAFMALLILAGLQSIDRSLYDVAKVAGASKWQQFKMITLPLIMPTVLVAMLF 270
Cdd:COG1177   137 AHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALL 194
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 49-339 1.38e-17

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 81.35  E-value: 1.38e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921  49 VIAVYPLVTTFWMSLFADALSGSANLGqfVGINNYVELLTNqrsyalpsafmptsltpnGIFASALGVTLIFTFVSVFFE 128
Cdd:COG1176    24 LFFVLPLLLLLVYSFTTRDPYGGVVPG--FTLENYARLFTD------------------PLYLKVLLRTLWIALLTTLIC 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 129 TIIGFGQALVLDQ-EFRGRRWVRVAIIIPWAVPIVIQGMIFYLLFQPGiGFLigtsdnPTLLNQLTWIGT-TPLANTVda 206
Cdd:COG1176    84 LLLGYPIAYFLARaPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRN-GLL------NSLLLALGLIDEpLRLLYTE-- 154

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 207 tTIIIVADIWKTSAFMALLILAGLQSIDRSLYDVAKVAGASKWQQFKMITLPLIMPTVLVAMLFRTIAAMRVYGIIETTS 286
Cdd:COG1176   155 -FAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLG 233

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1633226921 287 AcTTVPSLSCLVVTSFNQ-RAYGTAASVAFITAAIIGIAVSVYIVKFADAEGGG 339
Cdd:COG1176   234 G-GKVLMIGNLIYQQFLSaLNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLLG 286
LplB COG4209
ABC-type polysaccharide transport system, permease component [Carbohydrate transport and ...
 110-271 1.95e-14

ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 443357 [Multi-domain]  Cd Length: 316  Bit Score: 72.82  E-value: 1.95e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 110 FASALGVTLIFTFVSVFFETIIGFGQALVLDQ--EFRGRRWVRVAIIIPWAVPIVIQGMIFYLLFQPGIGfligtsdnpt 187
Cdd:COG4209    84 FWRVLRNTLLISLLKLVFGFPLPIILALLLNElrSKRFKKTVQTISYLPHFLSWVVVAGIVYQFLSPDTG---------- 153

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 188 LLNQ-LTWIGTTP---LANTVDATTIIIVADIWKTSAFMALLILAGLQSIDRSLYDVAKVAGASKWQQFKMITLPLIMPT 263
Cdd:COG4209   154 LVNQlLRALGGEPinfLTEPKYFRPIYVFSGIWKEAGWGSIIYLAAITGIDPELYEAAAIDGAGRWQQIWHITLPGIRPT 233


                  ....*...
gi 1633226921 264 VLVAMLFR 271
Cdd:COG4209   234 IVILLILN 241
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
110-269 2.84e-14

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 73.66  E-value: 2.84e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 110 FASALGVTLIFTFVSVFFETIIGFGQALVLDQ-EFRGRRWVRVAIIIPWAVPIVIQGMIFYLLFQPG--IGFLIGTSDNP 186
Cdd:COG1178    52 LWRALGNTLLLALLVTLLSLLLGVPLAWLLARtDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNglLNTLLRALFGL 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 187 TLLNQLTWIGttplantvdattiIIVADIWKTSAFMALLILAGLQSIDRSLYDVAKVAGASKWQQFKMITLPLIMPTVLV 266
Cdd:COG1178   132 EPPDIYGLGG-------------IILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAA 198


                  ...
gi 1633226921 267 AML 269
Cdd:COG1178   199 GAL 201
malF PRK10999
maltose ABC transporter permease MalF;
117-262 2.56e-13

maltose ABC transporter permease MalF;


Pssm-ID: 236816 [Multi-domain]  Cd Length: 520  Bit Score: 70.37  E-value: 2.56e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 117 TLIFTFVSVFFETIIGFGQALVLDQE-FRGRRWVRVAIIIPWAVPIVIQGMIFYLLFQPGIGFLigtsdNpTLLNQLTWI 195
Cdd:PRK10999  290 TVVFSLLTVVLTVAVGMVLACLVQWEaLKGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEI-----N-MMLSALFGI 363

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1633226921 196 GTTPLANTVDATTIIIVADIWKTSAFMALLILAGLQSIDRSLYDVAKVAGASKWQQFKMITLPLIMP 262
Cdd:PRK10999  364 KPAWFSDPTLAKTMILIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIK 430
PRK10561 PRK10561
sn-glycerol-3-phosphate ABC transporter permease UgpA;
76-262 1.16e-12

sn-glycerol-3-phosphate ABC transporter permease UgpA;


Pssm-ID: 182550 [Multi-domain]  Cd Length: 280  Bit Score: 67.16  E-value: 1.16e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921  76 QFVGINNYVELLTNqrSYALPSAFmptsltpngifasalgVTLIFTFVSVFFETIIGFGQALVLDQEFRGRRWVRVAIII 155
Cdd:PRK10561   37 QFVGLDNFVALFHD--SYYLDSFW----------------TTIKFSTLVTVSGLLVSLFFAALVDYVVRGSRFYQTLMLL 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 156 PWAVPIVIQGMIFYLLFQPGIGFLIgtsdnpTLLNQLTWIGTTPlANTVDATTIIIVADIWKTSAFMALLILAGLQSIDR 235
Cdd:PRK10561   99 PYAVAPAVAAVLWIFLFNPGRGLIT------HFLAEFGYDWNHA-QNSGQAMFLVVFASVWKQISYNFLFFFAALQSIPR 171

                         170       180
                  ....*....|....*....|....*..
gi 1633226921 236 SLYDVAKVAGASKWQQFKMITLPLIMP 262
Cdd:PRK10561  172 SLVEAAAIDGAGPIRRFFKLALPLIAP 198
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 114-321 1.49e-12

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 65.38  E-value: 1.49e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 114 LGVTLIFTFVSVFFETIIGFGQALVLDQ-EFRGRRWVRVAIIIPWAVPIVIQGMIFYLLFQPGIGFLIGTSDnptllnql 192
Cdd:cd06261     1 LLNTLLLALIATLLALVLGLLLGIILARkRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGL-------- 72

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 193 twigttplantvdATTIIIVADIWkTSAFMALLILAGLQSIDRSLYDVAKVAGASKWQQFKMITLPLIMPTVLVAMLFRT 272
Cdd:cd06261    73 -------------GLPALILALLL-IAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAF 138

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1633226921 273 IAAMRVYGIIETT--SACTTVPSLSCLVVTSFNQRAYGTAASVAFITAAII 321
Cdd:cd06261   139 ARALGEFALVSFLggGEAPGPGTGLLLIFAILFPGDLGVAAAVALILLLLS 189
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
107-325 4.59e-10

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 60.56  E-value: 4.59e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 107 NGIFASALGVTLIFTFVSVFFETIIGFGQALVLD-QEFRGRRWVRVAIIIPWAVP-IVIqgmifyllfqpGIGFLIGtsd 184
Cdd:COG1178   333 DPSLLRALLNSLLLALLAALLAVLLALLLAYLVRrRRGRLARLLDRLAMLPYAVPgIVL-----------GLGLLLL--- 398

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 185 nptllnqLTWIGTTPLANTVdatTIIIVADIWKTSAFMALLILAGLQSIDRSLYDVAKVAGASKWQQFKMITLPLIMPTV 264
Cdd:COG1178   399 -------FNRPLPLLLYGTL---AILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGL 468

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1633226921 265 LVAMLFRTIAAMRVYGIIETTSAcTTVPSLSCLVVTSFNQRAYGTAASVAFITAAIIGIAV 325
Cdd:COG1178   469 LAAALLVFVTSMKELSATLLLRP-PGFETLAVLIYQLASSGRYGEAAALALLLVLVSLLPV 528
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 110-265 6.79e-09

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 55.91  E-value: 6.79e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 110 FASALGVTLIFTFVSVFFETIIGFGQALVLDQ-EFRGRRWVRVAIIIPWAVPIVIQGMIFYLLFQPGigFLIGTsdnptL 188
Cdd:COG0555    52 VLAALKLSLGTALIAALINLVFGLPLAWVLVRyRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPN--GWLGQ-----L 124

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1633226921 189 LNQLTW-IGTTPLAntvdattiIIVADIWKTSAFMALLILAGLQSIDRSLYDVAKVAGASKWQQFKMITLPLIMPTVL 265
Cdd:COG0555   125 LAPLGIkVAFTPLG--------IVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALL 194
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 143-330 1.52e-08

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 53.84  E-value: 1.52e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 143 FRGRRWVRVAIIIPWAVPIVIQGMIFYLLFQpgigfligtsdnptllnqLTWIGTTPLAntvdattiIIVADIWKTSAFM 222
Cdd:pfam00528  14 RRLDRLLRPLIDLLQALPSFVLAILLVVIAI------------------LSILGHGILP--------AIILALLGWAGYA 67

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 223 ALLILAGLQSIDRSLYDVAKVAGASKWQQFKMITLPLIMPTVLVAMLFRTIAAMRVYGIIETTsacTTVPSLSCLVVTSF 302
Cdd:pfam00528  68 RLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFL---GSWPGLGLLLIEAI 144

                         170       180
                  ....*....|....*....|....*....
gi 1633226921 303 NQRAYG-TAASVAFITAAIIGIAVSVYIV 330
Cdd:pfam00528 145 LGYDYPeIQGPVLAAALILLLLNLLVDIL 173
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 49-270 7.53e-07

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 49.71  E-value: 7.53e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921  49 VIAVYPLVTTFWMSL--FADALSGSANL-GQFVGINNYVELLTNQRsyalpsafmptsltpngiFASALGVTLIFTFVSV 125
Cdd:COG0395    26 LLFLFPLYWMVVTSFkpPAEIFSGPPSLlPSEFTLENYRAAFTDGP------------------FGRYLLNSLIVAVVST 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 126 FFETIIGFGQALVLDQ-EFRGRRWVRVAIIIPWAVPIVIqGMI-FYLLFqpgigfligtsdnptllNQLTWIGTtPLAnt 203
Cdd:COG0395    88 VLSLLLSSLAAYALARfRFRGRKLLFLLILATLMIPGQV-LLIpLYLLF-----------------RQLGLLNT-YWG-- 146

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1633226921 204 vdattiIIVADIWKTSAFMALLILAGLQSIDRSLYDVAKVAGASKWQQFKMITLPLIMPTVLVAMLF 270
Cdd:COG0395   147 ------LILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIF 207
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 110-268 3.67e-06

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 47.38  E-value: 3.67e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 110 FASALGVTLIFTFVSVFFETIIGFGQALVLDQEFRGRRWVRVAII-IPWAVPIVIQGMIFYLLFqPGIGFligtsdnptl 188
Cdd:COG0765    15 LLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVeFFRGTPLLVQLFFIYFGL-PLLGI---------- 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 189 lnqltwigttplanTVDATTIIIVADIWKTSAFMALLILAGLQSIDRSLYDVAKVAGASKWQQFKMITLPLIMPTVLVAM 268
Cdd:COG0765    84 --------------DLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPL 149
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 103-268 6.82e-06

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 46.68  E-value: 6.82e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 103 SLTPNGIFASALGVTLIFTFVSVFFETIIGFGQALVLDQEFRGRRWVRVAIIIPWAVPIVIQGMIFYLLFqpGIGfligt 182
Cdd:COG0600    52 ELLASGELWEHLLASLLRVLLGFALAALLGVPLGLLLGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWF--GIG----- 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 183 sdnptllnqltwigttplantvDATTIIIVAdiwkTSAF--MALLILAGLQSIDRSLYDVAKVAGASKWQQFKMITLPLI 260
Cdd:COG0600   125 ----------------------EASKIFVIF----LGAFfpILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAA 178


                  ....*...
gi 1633226921 261 MPTVLVAM 268
Cdd:COG0600   179 LPYIFTGL 186
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 75-258 5.30e-05

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 44.67  E-value: 5.30e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921  75 GQFVGINNYVELLTNqrsyalpSAFMPTsltpngiFASALGVTLIFTFVSVFfetiIGFGQALVLDQE-FRGRRWVRVAI 153
Cdd:TIGR03262  35 GDFIGLANFAEYFAT-------PGLLQS-------LGNSLTVSAIVTAIVVP----LAFAFAYALTRSrIPGKGAFRLVA 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 154 IIPWAVPIVIQGMIFYLLFqpgigfligtsDNPTLLNQLTwigttpLANTVDATTIIIVADIWKTSAFMALLILAGLQSI 233
Cdd:TIGR03262  97 LLPLLAPSLLPAISLIYLF-----------GNQGLLKGLL------GGFSIYGFWGIVIGEVFYTFPHALMILVTALSLA 159

                         170       180
                  ....*....|....*....|....*
gi 1633226921 234 DRSLYDVAKVAGASKWQQFKMITLP 258
Cdd:TIGR03262 160 DGRLYEAARAMGASPWRTFFTVTLP 184
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 221-276 4.30e-04

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 41.60  E-value: 4.30e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1633226921 221 FMALLILAGLQSIDRSLYDVAKVAGASKWQQFKMITLPLIMPTVLVAMLFRTIAAM 276
Cdd:PRK09497  164 FMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAM 219
MalG COG3833
ABC-type maltose transport system, permease component MalG [Carbohydrate transport and ...
 49-276 5.22e-04

ABC-type maltose transport system, permease component MalG [Carbohydrate transport and metabolism];


Pssm-ID: 443045 [Multi-domain]  Cd Length: 282  Bit Score: 41.29  E-value: 5.22e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921  49 VIAVYPLVTTFWMSLFA-DALSGSANLGQFVGINNYVELLTNqrsyalpsafmptslTPngiFASALGVTLIFTFVSVFF 127
Cdd:COG3833    27 IIALFPILWVVSASFNPgGSLYSSSLIPENFTLENYKKLFTE---------------TP---FLRWFLNSLIVAVVTAII 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 128 ETIIGFGQALVLDQ-EFRGRRwvrvaiiipwavpiviQGMIFYLLFQ--PGIGFLIGTSdnpTLLNQLTWIGTTPLANTV 204
Cdd:COG3833    89 SVFLAALAAYAFSRfRFKGRK----------------AGLLALLLLQmfPAFLALVALY---LLLSALGLLNTLLGLILV 149

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1633226921 205 DATTIIIVAdIWKTSAFMallilaglQSIDRSLYDVAKVAGASKWQQFKMITLPLIMPTVLVAMLFRTIAAM 276
Cdd:COG3833   150 YLGGAIPFN-TWLMKGYF--------DTIPKELDEAAKIDGASHFQIFFRIILPLAKPILAVVALLSFIGPW 212
modB PRK09421
molybdate ABC transporter permease subunit;
230-268 7.31e-04

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 40.29  E-value: 7.31e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1633226921 230 LQSIDRSLYDVAKVAGASKWQQFKMITLPLIMPTVLVAM 268
Cdd:PRK09421  115 LEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGT 153
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
113-260 1.28e-03

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 40.12  E-value: 1.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 113 ALGVTLIFTFVSVFFETIIGFGQA-LVLDQEFRGRRWVRVAIIIPWAVPIVIQGMIfYLLFQPGIGFLIGTSDNPTLLNQ 191
Cdd:PRK11602   65 AIWLTVLIALIAVPVNLVFGILLAwLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLV-YLLFYGSNGPLGGWLDEHNLQLM 143

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1633226921 192 LTWIGttplantvdattiIIVADIWKTSAFMALLILAGLQSIDRSLYDVAKVAGASKWQQFKMITLPLI 260
Cdd:PRK11602  144 FSWPG-------------MVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNI 199
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 114-250 1.75e-03

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 38.68  E-value: 1.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 114 LGVTLIFTFVSVFFETIIGFGQALvldQEFRGRRWVRVAIIIPWAVPIVIQGMIFYLLF--QPGIGFLigtsdnpTLLnq 191
Cdd:NF038017    2 LRVSGTATLIAALIGIPLGALLAL---RRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLsrSGPLGFL-------GLL-- 69

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 1633226921 192 ltwigTTPLAntvdattiIIVADIWKTSAFMALLILAGLQSIDRSLYDVAKVAGASKWQ 250
Cdd:NF038017   70 -----YTPTA--------MIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQ 115
malG PRK10998
maltose ABC transporter permease MalG;
231-276 1.78e-03

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 39.69  E-value: 1.78e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1633226921 231 QSIDRSLYDVAKVAGASKWQQFKMITLPLIMPTVLVAMLFRTIAAM 276
Cdd:PRK10998  182 ETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAI 227
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
113-338 7.14e-03

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 37.81  E-value: 7.14e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 113 ALGVTLIFTFVSVFFETIIGFGQALVLDQ-EFRGRRWVRVAIIIPWAVPIVIQGMIFYLLFQPGiGFLIGTSDNPTLLNQ 191
Cdd:PRK10971   59 AYKVTLLSAFVASIFNAVFGLLMAWILTRyRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVN-GWYGEWLAKFDIKVT 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 192 LTWIGttplantvdattiIIVADIWKTSAFMALLILAGLQSIDRSLYDVAKVAGASKWQQFKMITLPLIMPTVLVAMLFR 271
Cdd:PRK10971  138 YTWLG-------------IAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALS 204

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1633226921 272 TIAAMRVYG----IIETTSACTTVPSLSCLV-VTSFNQRAYGTAASVAFITAAIIGIAVSVYIVKFADAEGG 338
Cdd:PRK10971  205 FTRSLGEFGavifIAGNIAWKTEVTSLMIFVrLQEFDYPAASAIASVILAASLLLLFSINTLQSRFGRRVVG 276
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 112-269 8.99e-03

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 37.52  E-value: 8.99e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 112 SALGVTLIFTFVSVFFETIIGFGQALVLDQ--EFRGRRWVRVAIIIPWAVPIVIQGMIFYLLFQpGIGFLIGTsdnPTLL 189
Cdd:PRK10592   63 SAVGLSLTIAACAATAAAILGTIAAVVMVRfgRFRGSNGFAFMITAPLVMPDVITGLSLLLLFV-ALAHAIGW---PADR 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1633226921 190 NQLTwigttplantvdattiIIVADIWKTSAFMALLILAGLQSIDRSLYDVAKVAGASKWQQFKMITLPLIMPTVLVAML 269
Cdd:PRK10592  139 GMLT----------------IWLAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWL 202
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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