NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1721624177|gb|QEC28870|]
View 

hypothetical protein BG549_04495 [Mannheimia haemolytica]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Imm51 super family cl21396
Immunity protein 51; A predicted immunity protein with an alpha+beta fold and a conserved ...
 9-113 3.74e-14

Immunity protein 51; A predicted immunity protein with an alpha+beta fold and a conserved tryptophan and Dx[DE] motif. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbour of the toxin gene, usually containing a domain of the Tox-RES or Tox-URI1 families. Proteins containing this domain are present in heterogeneous poly immunity loci in polymorphic toxin systems.


The actual alignment was detected with superfamily member pfam15595:

Pssm-ID: 406115  Cd Length: 105  Bit Score: 63.11  E-value: 3.74e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721624177   9 ISEQFRTVAVEFDLEDNRIFELGERINTEYdvAYMNGYNWAAFLRAYLSIYRPSLLELLEEDPDVGcYYVTYPlseKSKE 88
Cdd:pfam15595   4 IEHDHDSISYCLLLTDDKTEEFGERFEEEG--AYGNGYDWAALAEVYLREKAPELLEDIDFDPEAG-MFCAYS---EDKD 77

                          90       100
                  ....*....|....*....|....*
gi 1721624177  89 KARELKKIIVYLVENEEEILNFIGE 113
Cdd:pfam15595  78 ALKRLAEMIKEACEDEALIRELIRE 102
 
Name Accession Description Interval E-value
Imm51 pfam15595
Immunity protein 51; A predicted immunity protein with an alpha+beta fold and a conserved ...
 9-113 3.74e-14

Immunity protein 51; A predicted immunity protein with an alpha+beta fold and a conserved tryptophan and Dx[DE] motif. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbour of the toxin gene, usually containing a domain of the Tox-RES or Tox-URI1 families. Proteins containing this domain are present in heterogeneous poly immunity loci in polymorphic toxin systems.


Pssm-ID: 406115  Cd Length: 105  Bit Score: 63.11  E-value: 3.74e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721624177   9 ISEQFRTVAVEFDLEDNRIFELGERINTEYdvAYMNGYNWAAFLRAYLSIYRPSLLELLEEDPDVGcYYVTYPlseKSKE 88
Cdd:pfam15595   4 IEHDHDSISYCLLLTDDKTEEFGERFEEEG--AYGNGYDWAALAEVYLREKAPELLEDIDFDPEAG-MFCAYS---EDKD 77

                          90       100
                  ....*....|....*....|....*
gi 1721624177  89 KARELKKIIVYLVENEEEILNFIGE 113
Cdd:pfam15595  78 ALKRLAEMIKEACEDEALIRELIRE 102
 
Name Accession Description Interval E-value
Imm51 pfam15595
Immunity protein 51; A predicted immunity protein with an alpha+beta fold and a conserved ...
 9-113 3.74e-14

Immunity protein 51; A predicted immunity protein with an alpha+beta fold and a conserved tryptophan and Dx[DE] motif. Proteins containing this domain are present in bacterial polymorphic toxin systems as an immediate gene neighbour of the toxin gene, usually containing a domain of the Tox-RES or Tox-URI1 families. Proteins containing this domain are present in heterogeneous poly immunity loci in polymorphic toxin systems.


Pssm-ID: 406115  Cd Length: 105  Bit Score: 63.11  E-value: 3.74e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1721624177   9 ISEQFRTVAVEFDLEDNRIFELGERINTEYdvAYMNGYNWAAFLRAYLSIYRPSLLELLEEDPDVGcYYVTYPlseKSKE 88
Cdd:pfam15595   4 IEHDHDSISYCLLLTDDKTEEFGERFEEEG--AYGNGYDWAALAEVYLREKAPELLEDIDFDPEAG-MFCAYS---EDKD 77

                          90       100
                  ....*....|....*....|....*
gi 1721624177  89 KARELKKIIVYLVENEEEILNFIGE 113
Cdd:pfam15595  78 ALKRLAEMIKEACEDEALIRELIRE 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH