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Conserved domains on  [gi|1752759599|gb|QEV98431|]
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AAA family ATPase (plasmid) [Klebsiella aerogenes]

Protein Classification

AAA family ATPase( domain architecture ID 11483591)

AAA family ATPase similar to Geobacter sulfurreducens transposase/IS protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK09183 PRK09183
transposase/IS protein; Provisional
2-260 0e+00

transposase/IS protein; Provisional


:

Pssm-ID: 181681  Cd Length: 259  Bit Score: 498.46  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599   2 MVELQHQRLMVLAEQLQLDSLIGAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFT 81
Cdd:PRK09183    1 MMELQHQRLMALCGQLQLESLISAAPALAQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599  82 FATGAPQKQIQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTSQRQGRYKTTLNR 161
Cdd:PRK09183   81 FATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQR 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599 162 GVMAPKLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGE 241
Cdd:PRK09183  161 GVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIKGE 240
                         250
                  ....*....|....*....
gi 1752759599 242 SYRLKQKRKAGVIAEANPE 260
Cdd:PRK09183  241 SYRLKQKRKAGVIAEANPE 259
 
Name Accession Description Interval E-value
PRK09183 PRK09183
transposase/IS protein; Provisional
2-260 0e+00

transposase/IS protein; Provisional


Pssm-ID: 181681  Cd Length: 259  Bit Score: 498.46  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599   2 MVELQHQRLMVLAEQLQLDSLIGAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFT 81
Cdd:PRK09183    1 MMELQHQRLMALCGQLQLESLISAAPALAQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599  82 FATGAPQKQIQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTSQRQGRYKTTLNR 161
Cdd:PRK09183   81 FATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQR 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599 162 GVMAPKLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGE 241
Cdd:PRK09183  161 GVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIKGE 240
                         250
                  ....*....|....*....
gi 1752759599 242 SYRLKQKRKAGVIAEANPE 260
Cdd:PRK09183  241 SYRLKQKRKAGVIAEANPE 259
IstB_IS21 pfam01695
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ...
13-251 2.47e-130

IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.


Pssm-ID: 426385 [Multi-domain]  Cd Length: 238  Bit Score: 368.31  E-value: 2.47e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599  13 LAEQLQLDSLIGAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQIQ 92
Cdd:pfam01695   2 QLKQLKLPGMAEAWEELSQQAASTSLSYEEFLEHLLEEELAWRDTRRLERLLRMAKLPPHKTLEDFDFTFAPGLDQRIVA 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599  93 SLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTSQRQGRYKTTLNRgVMAPKLLIID 172
Cdd:pfam01695  82 ELASLSFIDRAQNVVLLGPPGVGKTHLAIALGVEACRAGYSVRFTSAADLVNQLKRAHGDGKLTRKLQQ-LLKPDVLILD 160
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1752759599 173 EIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFaGDAALTSAMLDRILHHSHVVQIKGESYRLKQKRKA 251
Cdd:pfam01695 161 EWGYLPLDQAEANLLFQVISKRYEHRSIILTSNLPFGEWGQVF-GDAVLATAILDRLLHHCHIVPIKGESYRLKTKSEA 238
IS21_help_AAA NF038214
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ...
15-247 2.14e-123

IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.


Pssm-ID: 439516  Cd Length: 232  Bit Score: 350.62  E-value: 2.14e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599  15 EQLQLDSLIGAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQIQSL 94
Cdd:NF038214    2 RQLKLPGMARALEELAEQAAREELSFEEFLALLLEAELAERENRRIERRLKRARFPAAKTLEDFDFTAAPGLDKAQIREL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599  95 RSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTSQRQGRYKTTLNRgVMAPKLLIIDEI 174
Cdd:NF038214   82 ATLDFIERAENVLLLGPPGTGKTHLAIALGYAACRQGYRVRFTTAADLVEQLAQARADGRLGRLLRR-LARYDLLIIDEL 160
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1752759599 175 GYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFaGDAALTSAMLDRILHHSHVVQIKGESYRLKQ 247
Cdd:NF038214  161 GYLPFSREGANLLFELIADRYERGSTIITSNLPFSEWGEVF-GDPTLAAAILDRLVHHAHILELKGESYRLKE 232
DnaC COG1484
DNA replication protein DnaC [Replication, recombination and repair];
6-248 7.27e-110

DNA replication protein DnaC [Replication, recombination and repair];


Pssm-ID: 441093 [Multi-domain]  Cd Length: 242  Bit Score: 316.72  E-value: 7.27e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599   6 QHQRLMVLAEQLQLDSLIGAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATG 85
Cdd:COG1484     2 LMEELKELLKALKLPGMAEALDELLAQAACDELSYEEFLALLLEAEVAEREQRRIERRLKAARFPAAKTLEDFDFDAQPG 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599  86 APQKQIQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTSQRQGRYKTTLNRgVMA 165
Cdd:COG1484    82 LDRRQILELATLDFIERGENLILLGPPGTGKTHLAIALGHEACRAGYRVRFTTAPDLVNELKEARADGRLERLLKR-LAK 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599 166 PKLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFaGDAALTSAMLDRILHHSHVVQIKGESYRL 245
Cdd:COG1484   161 VDLLILDELGYLPLDAEGAELLFELISDRYERRSTIITSNLPFSEWGEVF-GDPTLATAILDRLVHHAHIIELKGESYRL 239

                  ...
gi 1752759599 246 KQK 248
Cdd:COG1484   240 KEA 242
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
88-188 2.71e-12

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 62.93  E-value: 2.71e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599  88 QKQIQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTSQRQGRYKTTLNRGVMA-- 165
Cdd:cd00009     4 EEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEka 83
                          90       100
                  ....*....|....*....|....
gi 1752759599 166 -PKLLIIDEIGYLPFSQEEAKLFF 188
Cdd:cd00009    84 kPGVLFIDEIDSLSRGAQNALLRV 107
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
102-232 1.07e-09

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 55.46  E-value: 1.07e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599  102 RNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTSQRQGRYKTTLNRGV--------------MAPK 167
Cdd:smart00382   1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSgelrlrlalalarkLKPD 80
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1752759599  168 LLIIDEIGYLPFSQEEAKLFFQV------IAKRYEKSAMILTSNLPfgqwdqtFAGDAALTSAMLDRILHH 232
Cdd:smart00382  81 VLILDEITSLLDAEQEALLLLLEelrlllLLKSEKNLTVILTTNDE-------KDLGPALLRRRFDRRIVL 144
DnaA TIGR00362
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ...
110-204 4.97e-03

chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273037 [Multi-domain]  Cd Length: 437  Bit Score: 37.89  E-value: 4.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599 110 GPSGVGKTHLAIAMGYEAVR--AGIKVRFTTAADLLLQLSTSQRQGR---YKTTLnRGVmapKLLIIDEIGYL---PFSQ 181
Cdd:TIGR00362 144 GGVGLGKTHLLHAIGNEILEnnPNAKVLYVSSEKFTNDFVNALRNNKmeeFKEKY-RSV---DLLLIDDIQFLagkERTQ 219
                          90       100
                  ....*....|....*....|....
gi 1752759599 182 EEaklFFQVIAKRYEKS-AMILTS 204
Cdd:TIGR00362 220 EE---FFHTFNALHENNkQIVLTS 240
 
Name Accession Description Interval E-value
PRK09183 PRK09183
transposase/IS protein; Provisional
2-260 0e+00

transposase/IS protein; Provisional


Pssm-ID: 181681  Cd Length: 259  Bit Score: 498.46  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599   2 MVELQHQRLMVLAEQLQLDSLIGAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFT 81
Cdd:PRK09183    1 MMELQHQRLMALCGQLQLESLISAAPALAQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599  82 FATGAPQKQIQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTSQRQGRYKTTLNR 161
Cdd:PRK09183   81 FATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQR 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599 162 GVMAPKLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGDAALTSAMLDRILHHSHVVQIKGE 241
Cdd:PRK09183  161 GVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLPFGQWDQTFAGDAALTSAMLDRLLHHSHVVQIKGE 240
                         250
                  ....*....|....*....
gi 1752759599 242 SYRLKQKRKAGVIAEANPE 260
Cdd:PRK09183  241 SYRLKQKRKAGVIAEANPE 259
IstB_IS21 pfam01695
IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is ...
13-251 2.47e-130

IstB-like ATP binding protein; This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.


Pssm-ID: 426385 [Multi-domain]  Cd Length: 238  Bit Score: 368.31  E-value: 2.47e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599  13 LAEQLQLDSLIGAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQIQ 92
Cdd:pfam01695   2 QLKQLKLPGMAEAWEELSQQAASTSLSYEEFLEHLLEEELAWRDTRRLERLLRMAKLPPHKTLEDFDFTFAPGLDQRIVA 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599  93 SLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTSQRQGRYKTTLNRgVMAPKLLIID 172
Cdd:pfam01695  82 ELASLSFIDRAQNVVLLGPPGVGKTHLAIALGVEACRAGYSVRFTSAADLVNQLKRAHGDGKLTRKLQQ-LLKPDVLILD 160
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1752759599 173 EIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFaGDAALTSAMLDRILHHSHVVQIKGESYRLKQKRKA 251
Cdd:pfam01695 161 EWGYLPLDQAEANLLFQVISKRYEHRSIILTSNLPFGEWGQVF-GDAVLATAILDRLLHHCHIVPIKGESYRLKTKSEA 238
IS21_help_AAA NF038214
IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was ...
15-247 2.14e-123

IS21-like element helper ATPase IstB; This protein family model resembles PF01695, but was built to hit full-length AAA+ ATPases of IS21 family IS (insertion sequence) elements.


Pssm-ID: 439516  Cd Length: 232  Bit Score: 350.62  E-value: 2.14e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599  15 EQLQLDSLIGAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQKQIQSL 94
Cdd:NF038214    2 RQLKLPGMARALEELAEQAAREELSFEEFLALLLEAELAERENRRIERRLKRARFPAAKTLEDFDFTAAPGLDKAQIREL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599  95 RSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTSQRQGRYKTTLNRgVMAPKLLIIDEI 174
Cdd:NF038214   82 ATLDFIERAENVLLLGPPGTGKTHLAIALGYAACRQGYRVRFTTAADLVEQLAQARADGRLGRLLRR-LARYDLLIIDEL 160
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1752759599 175 GYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFaGDAALTSAMLDRILHHSHVVQIKGESYRLKQ 247
Cdd:NF038214  161 GYLPFSREGANLLFELIADRYERGSTIITSNLPFSEWGEVF-GDPTLAAAILDRLVHHAHILELKGESYRLKE 232
DnaC COG1484
DNA replication protein DnaC [Replication, recombination and repair];
6-248 7.27e-110

DNA replication protein DnaC [Replication, recombination and repair];


Pssm-ID: 441093 [Multi-domain]  Cd Length: 242  Bit Score: 316.72  E-value: 7.27e-110
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599   6 QHQRLMVLAEQLQLDSLIGAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATG 85
Cdd:COG1484     2 LMEELKELLKALKLPGMAEALDELLAQAACDELSYEEFLALLLEAEVAEREQRRIERRLKAARFPAAKTLEDFDFDAQPG 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599  86 APQKQIQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTSQRQGRYKTTLNRgVMA 165
Cdd:COG1484    82 LDRRQILELATLDFIERGENLILLGPPGTGKTHLAIALGHEACRAGYRVRFTTAPDLVNELKEARADGRLERLLKR-LAK 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599 166 PKLLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFaGDAALTSAMLDRILHHSHVVQIKGESYRL 245
Cdd:COG1484   161 VDLLILDELGYLPLDAEGAELLFELISDRYERRSTIITSNLPFSEWGEVF-GDPTLATAILDRLVHHAHIIELKGESYRL 239

                  ...
gi 1752759599 246 KQK 248
Cdd:COG1484   240 KEA 242
PRK06526 PRK06526
transposase; Provisional
9-248 3.57e-73

transposase; Provisional


Pssm-ID: 180607  Cd Length: 254  Bit Score: 223.98  E-value: 3.57e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599   9 RLMVLAEQLQLDSLIGAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQ 88
Cdd:PRK06526    4 ELAYLTRALKAPTLAGAVERLAERARAESWSHEEFLAACLQREVAARESHGGEGRIRAARFPARKSLEEFDFDHQRSLKR 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599  89 KQIQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTSQRQGRYKTTLNRgVMAPKL 168
Cdd:PRK06526   84 DTIAHLGTLDFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK-LGRYPL 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599 169 LIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFaGDAALTSAMLDRILHHSHVVQIKGESYRLKQK 248
Cdd:PRK06526  163 LIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVF-GDDVVAAAMIDRLVHHAEVISLKGDSYRLKDR 241
PRK08181 PRK08181
transposase; Validated
9-252 2.79e-42

transposase; Validated


Pssm-ID: 136670 [Multi-domain]  Cd Length: 269  Bit Score: 145.07  E-value: 2.79e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599   9 RLMVLAEQLQLDSLIGAAPALSQQAVDQEWSYMDFLEHLLHEEKLARHQRKQAMYTRMAAFPAVKTFEEYDFTFATGAPQ 88
Cdd:PRK08181   11 RLGLLLNELRLPTIKTLWPQFAEQADKEGWPAARFLAAIAEHELAERARRRIERHLAEAHLPPGKTLDSFDFEAVPMVSK 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599  89 KQIQSLRS-LSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTSQRQGRYKTTLNRgVMAPK 167
Cdd:PRK08181   91 AQVMAIAAgDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAK-LDKFD 169
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599 168 LLIIDEIGYLPFSQEEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAgDAALTSAMLDRILHHSHVVQIKGESYR--- 244
Cdd:PRK08181  170 LLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGEWNRVFP-DPAMTLAAVDRLVHHATIFEMNVESYRrrt 248

                  ....*....
gi 1752759599 245 -LKQKRKAG 252
Cdd:PRK08181  249 aLERKRGPG 257
AAA cd00009
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ...
88-188 2.71e-12

The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.


Pssm-ID: 99707 [Multi-domain]  Cd Length: 151  Bit Score: 62.93  E-value: 2.71e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599  88 QKQIQSLRSLSFIERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTSQRQGRYKTTLNRGVMA-- 165
Cdd:cd00009     4 EEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEka 83
                          90       100
                  ....*....|....*....|....
gi 1752759599 166 -PKLLIIDEIGYLPFSQEEAKLFF 188
Cdd:cd00009    84 kPGVLFIDEIDSLSRGAQNALLRV 107
PRK08116 PRK08116
hypothetical protein; Validated
74-256 3.80e-11

hypothetical protein; Validated


Pssm-ID: 236153 [Multi-domain]  Cd Length: 268  Bit Score: 61.58  E-value: 3.80e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599  74 TFEEYDFTfatGAPQKQIQSLRS--LSFIE-RNENIVLL--GPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQL-- 146
Cdd:PRK08116   83 TFENFLFD---KGSEKAYKIARKyvKKFEEmKKENVGLLlwGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIks 159
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599 147 --STSQRQGRYkTTLNRGVMAPkLLIIDEIGY---LPFSQEEaklFFQVIAKRY-EKSAMILTSNLPFGQWDQTfagdaa 220
Cdd:PRK08116  160 tyKSSGKEDEN-EIIRSLVNAD-LLILDDLGAerdTEWAREK---VYNIIDSRYrKGLPTIVTTNLSLEELKNQ------ 228
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 1752759599 221 LTSAMLDRILHHSHVVQIKGESYRLK-QKRKAGVIAE 256
Cdd:PRK08116  229 YGKRIYDRILEMCTPVENEGKSYRKEiAKEKLQRLKE 265
PRK06835 PRK06835
DNA replication protein DnaC; Validated
87-252 5.87e-10

DNA replication protein DnaC; Validated


Pssm-ID: 235871 [Multi-domain]  Cd Length: 329  Bit Score: 58.76  E-value: 5.87e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599  87 PQKQIQSLRS--LSFIE----RNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLstsqRQGRYKtTLN 160
Cdd:PRK06835  161 PRKNMEKILEkcKNFIEnfdkNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL----REIRFN-NDK 235
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599 161 RGVMAPK------LLIIDEIGYLP---FSQEEaklFFQVIAKRYEKS-AMILTSNLPFGQWDQTFagdaalTSAMLDRIL 230
Cdd:PRK06835  236 ELEEVYDllincdLLIIDDLGTEKiteFSKSE---LFNLINKRLLRQkKMIISTNLSLEELLKTY------SERISSRLL 306
                         170       180
                  ....*....|....*....|..
gi 1752759599 231 HHSHVVQIKGESYRLKQKRKAG 252
Cdd:PRK06835  307 GNFTLLKFYGEDIRIKKNLQKK 328
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
102-232 1.07e-09

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 55.46  E-value: 1.07e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599  102 RNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTSQRQGRYKTTLNRGV--------------MAPK 167
Cdd:smart00382   1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSgelrlrlalalarkLKPD 80
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1752759599  168 LLIIDEIGYLPFSQEEAKLFFQV------IAKRYEKSAMILTSNLPfgqwdqtFAGDAALTSAMLDRILHH 232
Cdd:smart00382  81 VLILDEITSLLDAEQEALLLLLEelrlllLLKSEKNLTVILTTNDE-------KDLGPALLRRRFDRRIVL 144
PRK12377 PRK12377
putative replication protein; Provisional
105-194 2.11e-08

putative replication protein; Provisional


Pssm-ID: 183482 [Multi-domain]  Cd Length: 248  Bit Score: 53.68  E-value: 2.11e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599 105 NIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQLSTSQRQGRYKTTLNRGVMAPKLLIIDEIGYLPFSQEEA 184
Cdd:PRK12377  103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKNEQ 182
                          90
                  ....*....|
gi 1752759599 185 KLFFQVIAKR 194
Cdd:PRK12377  183 VVLNQIIDRR 192
ABC_ATPase cd00267
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ...
94-202 1.44e-06

ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.


Pssm-ID: 213179 [Multi-domain]  Cd Length: 157  Bit Score: 46.85  E-value: 1.44e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599  94 LRSLSF-IERNENIVLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAAD-------------LLLQLSTSQRQgryKTTL 159
Cdd:cd00267    15 LDNVSLtLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIaklpleelrrrigYVPQLSGGQRQ---RVAL 91
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1752759599 160 NRGVM-APKLLIIDEigylPFS---QEEAKLFFQVIAKRYEKSAMIL 202
Cdd:cd00267    92 ARALLlNPDLLLLDE----PTSgldPASRERLLELLRELAEEGRTVI 134
DnaA COG0593
Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];
106-212 9.94e-06

Chromosomal replication initiation ATPase DnaA [Replication, recombination and repair];


Pssm-ID: 440358 [Multi-domain]  Cd Length: 303  Bit Score: 45.95  E-value: 9.94e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599 106 IVLLGPSGVGKTHLAIAMGYEAVRA--GIKVRFTTAADLLLQLSTSQRQGRYKTTLNRGVMAPKLLI--IDEIGYLPFSQ 181
Cdd:COG0593    37 LFLYGGVGLGKTHLLHAIGNEALENnpGARVVYLTAEEFTNDFINAIRNNTIEEFKEKYRSVDVLLIddIQFLAGKEATQ 116
                          90       100       110
                  ....*....|....*....|....*....|..
gi 1752759599 182 EEaklFFQVI-AKRYEKSAMILTSNLPFGQWD 212
Cdd:COG0593   117 EE---FFHTFnALREAGKQIVLTSDRPPKELP 145
PRK07952 PRK07952
DNA replication protein DnaC; Validated
101-251 5.06e-05

DNA replication protein DnaC; Validated


Pssm-ID: 181180 [Multi-domain]  Cd Length: 244  Bit Score: 43.60  E-value: 5.06e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599 101 ERNENI---VLLGPSGVGKTHLAIAMGYEAVRAGIKVRFTTAADLLLQL-STSQRQGRYKTTLNRGVMAPKLLIIDEIGY 176
Cdd:PRK07952   94 EFDGNIasfIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMkDTFSNSETSEEQLLNDLSNVDLLVIDEIGV 173
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1752759599 177 LPFSQEEAKLFFQVIAKR--YEKSAMILTsnlpfgqwDQTFAG-DAALTSAMLDRI-LHHSHVVQIKGESYRLKQKRKA 251
Cdd:PRK07952  174 QTESRYEKVIINQIVDRRssSKRPTGMLT--------NSNMEEmTKLLGERVMDRMrLGNSLWVIFNWDSYRSRVTGKE 244
PhoH pfam02562
PhoH-like protein; PhoH is a cytoplasmic protein and predicted ATPase that is induced by ...
100-135 5.94e-04

PhoH-like protein; PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation.


Pssm-ID: 460592 [Multi-domain]  Cd Length: 204  Bit Score: 39.77  E-value: 5.94e-04
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1752759599 100 IERNENIVLLGPSGVGKTHLAIAMGYEAVRAGiKVR 135
Cdd:pfam02562  15 IKKNDIVFGIGPAGTGKTYLAVAMAVDALKNG-KVK 49
ABC_NikE_OppD_transporters cd03257
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ...
81-154 2.11e-03

ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.


Pssm-ID: 213224 [Multi-domain]  Cd Length: 228  Bit Score: 38.26  E-value: 2.11e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1752759599  81 TFATGAPQKQIqsLRSLSF-IERNENIVLLGPSGVGKTHLA-IAMGYEAVRAGiKVRFttAADLLLQLSTSQRQGR 154
Cdd:cd03257    10 SFPTGGGSVKA--LDDVSFsIKKGETLGLVGESGSGKSTLArAILGLLKPTSG-SIIF--DGKDLLKLSRRLRKIR 80
AAA_22 pfam13401
AAA domain;
106-188 2.31e-03

AAA domain;


Pssm-ID: 379165 [Multi-domain]  Cd Length: 129  Bit Score: 37.32  E-value: 2.31e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599 106 IVLLGPSGVGKTHLA--IAMGYEAVRAG-IKVR---FTTAADLL--------LQLSTSQRQGRYKTTLNRGV---MAPKL 168
Cdd:pfam13401   8 LVLTGESGTGKTTLLrrLLEQLPEVRDSvVFVDlpsGTSPKDLLrallralgLPLSGRLSKEELLAALQQLLlalAVAVV 87
                          90       100
                  ....*....|....*....|.
gi 1752759599 169 LIIDEIGYLPFSQ-EEAKLFF 188
Cdd:pfam13401  88 LIIDEAQHLSLEAlEELRDLL 108
COG4930 COG4930
Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, ...
88-119 3.91e-03

Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443958 [Multi-domain]  Cd Length: 672  Bit Score: 38.32  E-value: 3.91e-03
                          10        20        30
                  ....*....|....*....|....*....|..
gi 1752759599  88 QKQIQSLRSLSFIERNENIVLLGPSGVGKTHL 119
Cdd:COG4930   201 QKLLLLLRLIPFVERNYNLVELGPRGTGKSHV 232
McrB COG1401
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB ...
105-174 4.54e-03

5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB [Defense mechanisms];


Pssm-ID: 441011 [Multi-domain]  Cd Length: 477  Bit Score: 38.21  E-value: 4.54e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599 105 NIVLLGPSGVGKTHLAIA-----MGYEAVRagikVRFTTA------ADLLLQLSTSQRQGRYKTTlnRGVMA-------- 165
Cdd:COG1401   223 NVILAGPPGTGKTYLARRlaealGGEDNGR----IEFVQFhpswsyEDFLLGYRPSLDEGKYEPT--PGIFLrfclkaek 296
                          90
                  ....*....|...
gi 1752759599 166 ----PKLLIIDEI 174
Cdd:COG1401   297 npdkPYVLIIDEI 309
DnaA TIGR00362
chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; ...
110-204 4.97e-03

chromosomal replication initiator protein DnaA; DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273037 [Multi-domain]  Cd Length: 437  Bit Score: 37.89  E-value: 4.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599 110 GPSGVGKTHLAIAMGYEAVR--AGIKVRFTTAADLLLQLSTSQRQGR---YKTTLnRGVmapKLLIIDEIGYL---PFSQ 181
Cdd:TIGR00362 144 GGVGLGKTHLLHAIGNEILEnnPNAKVLYVSSEKFTNDFVNALRNNKmeeFKEKY-RSV---DLLLIDDIQFLagkERTQ 219
                          90       100
                  ....*....|....*....|....
gi 1752759599 182 EEaklFFQVIAKRYEKS-AMILTS 204
Cdd:TIGR00362 220 EE---FFHTFNALHENNkQIVLTS 240
EF-G_bact cd04170
Elongation factor G (EF-G) family; Translocation is mediated by EF-G (also called translocase). ...
105-182 5.06e-03

Elongation factor G (EF-G) family; Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group contains only bacterial members.


Pssm-ID: 206733 [Multi-domain]  Cd Length: 268  Bit Score: 37.57  E-value: 5.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599 105 NIVLLGPSGVGKTHLAIAMGYEA---VRAGIKVRFTTAADLllqlstSQRQGRYKTTLNRGVmAP------KLLIIDEIG 175
Cdd:cd04170     1 NIALVGHSGSGKTTLAEALLYATgaiDRLGRVEDGNTVSDY------DPEEKKRKMSIETSV-APlewnghKINLIDTPG 73

                  ....*..
gi 1752759599 176 YLPFSQE 182
Cdd:cd04170    74 YADFVGE 80
dnaA PRK00149
chromosomal replication initiator protein DnaA;
108-207 6.05e-03

chromosomal replication initiator protein DnaA;


Pssm-ID: 234667 [Multi-domain]  Cd Length: 401  Bit Score: 37.42  E-value: 6.05e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599 108 LLGPSGVGKTHLAIAMGYEAVRA--GIKVRFTTAADLLLQLSTSQRQG-------RYkttlnRGVmapKLLIIDEIGYL- 177
Cdd:PRK00149  104 IYGGVGLGKTHLLHAIGNYILEKnpNAKVVYVTSEKFTNDFVNALRNNtmeefkeKY-----RSV---DVLLIDDIQFLa 175
                          90       100       110
                  ....*....|....*....|....*....|...
gi 1752759599 178 --PFSQEEaklFFQVIAKRYEKSA-MILTSNLP 207
Cdd:PRK00149  176 gkERTQEE---FFHTFNALHEAGKqIVLTSDRP 205
ABC_TM1139_LivF_branched cd03224
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ...
90-136 6.15e-03

ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.


Pssm-ID: 213191 [Multi-domain]  Cd Length: 222  Bit Score: 37.03  E-value: 6.15e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1752759599  90 QIQSLRSLSF-IERNENIVLLGPSGVGKTHL--AIaMGYEAVRAGiKVRF 136
Cdd:cd03224    12 KSQILFGVSLtVPEGEIVALLGRNGAGKTTLlkTI-MGLLPPRSG-SIRF 59
Bac_DnaA pfam00308
Bacterial dnaA protein;
110-188 6.22e-03

Bacterial dnaA protein;


Pssm-ID: 278724 [Multi-domain]  Cd Length: 219  Bit Score: 36.92  E-value: 6.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752759599 110 GPSGVGKTHLAIAMGYEAVR--AGIKVRFTTAADLLLQLSTSQRQGRyKTTLNRGVMAPKLLIIDEIGYLPF---SQEEa 184
Cdd:pfam00308  41 GGVGLGKTHLLHAIGNYALQnaPNLRVVYLTAEEFLNDFVDAIRDNK-TNQFKEKYRNVDVLLIDDIQFLAGkegTQEE- 118

                  ....
gi 1752759599 185 klFF 188
Cdd:pfam00308 119 --FF 120
radB PRK09361
DNA repair and recombination protein RadB; Provisional
110-134 7.14e-03

DNA repair and recombination protein RadB; Provisional


Pssm-ID: 236482 [Multi-domain]  Cd Length: 225  Bit Score: 36.76  E-value: 7.14e-03
                          10        20
                  ....*....|....*....|....*
gi 1752759599 110 GPSGVGKTHLAIAMGYEAVRAGIKV 134
Cdd:PRK09361   30 GPPGSGKTNICLQLAVEAAKNGKKV 54
PotA COG3842
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ...
94-131 7.81e-03

ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];


Pssm-ID: 443052 [Multi-domain]  Cd Length: 353  Bit Score: 37.00  E-value: 7.81e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1752759599  94 LRSLSF-IERNENIVLLGPSGVGKTHL--AIAmGYEAVRAG 131
Cdd:COG3842    21 LDDVSLsIEPGEFVALLGPSGCGKTTLlrMIA-GFETPDSG 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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