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Conserved domains on  [gi|1773748090|gb|QGE06253|]
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tetratricopeptide repeat protein [Bordetella holmesii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 79-189 7.44e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 72.72  E-value: 7.44e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  79 DHIEQLLNAGRNEEAlkmIEARQQASRKIPgTDVQLMFQHARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAA 158
Cdd:COG3914    83 LAALLLQALGRYEEA---LALYRRALALNP-DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRR 158

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1773748090 159 RGELNQAQDALNMALRADPNYAAARSNLGDI 189
Cdd:COG3914   159 LGRLEEAIAALRRALELDPDNAEALNNLGNA 189
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 79-189 7.44e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 72.72  E-value: 7.44e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  79 DHIEQLLNAGRNEEAlkmIEARQQASRKIPgTDVQLMFQHARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAA 158
Cdd:COG3914    83 LAALLLQALGRYEEA---LALYRRALALNP-DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRR 158

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1773748090 159 RGELNQAQDALNMALRADPNYAAARSNLGDI 189
Cdd:COG3914   159 LGRLEEAIAALRRALELDPDNAEALNNLGNA 189
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 61-177 8.00e-11

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 59.87  E-value: 8.00e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  61 AVKPGvdtRLDPTAS--QITDHIEQLLNAGRNEEALKmieARQQASRKIPgTDVQLMFQHARALAALKRPQEAEAIYAEM 138
Cdd:NF033920  144 VLPPG---QLPATADplAYLRAAQDLEQTGQPEAALA---AYQTATKRWP-DSWLAYFGLGNAAYAAGDYAAAAAAFRQA 216

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1773748090 139 TTRFPELPEPWNNLAVLYAARGELNQAQDALNMALRADP 177
Cdd:NF033920  217 VERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALAP 255
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 85-189 4.85e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.00  E-value: 4.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  85 LNAGRNEEALKMIEARQQASRKIPGTDVQLMFQHARAlaalKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGELNQ 164
Cdd:TIGR02917 408 LSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRS----GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAK 483

                          90       100
                  ....*....|....*....|....*
gi 1773748090 165 AQDALNMALRADPNYAAARSNLGDI 189
Cdd:TIGR02917 484 AREAFEKALSIEPDFFPAAANLARI 508
TPR_19 pfam14559
Tetratricopeptide repeat;
126-189 1.88e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 38.33  E-value: 1.88e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1773748090 126 KRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGELNQAQDALNMALRADPNYAAARSNLGDI 189
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 67-209 9.83e-04

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 39.68  E-value: 9.83e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090   67 DTRLdpTASQITDHIEQLLNAGRNEEALKMIEaRQQASRKIpgtDVQLmfqhARALAALKRPQEAEAIYAEMTTRFPELP 146
Cdd:PRK11447   568 AQRL--QSDQVLETANRLRDSGKEAEAEALLR-QQPPSTRI---DLTL----ADWAQQRGDYAAARAAYQRVLTREPGNA 637

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1773748090  147 EPWNNLAVLYAARGELNQAQDALNMALRA---DPN----YAAARSNLGDIQLMI-TLRSYRQEAARGVPGM 209
Cdd:PRK11447   638 DARLGLIEVDIAQGDLAAARAQLAKLPATandSLNtqrrVALAWAALGDTAAAQrTFNRLIPQAKSQPPSM 708
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 146-179 4.53e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 33.96  E-value: 4.53e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1773748090  146 PEPWNNLAVLYAARGELNQAQDALNMALRADPNY 179
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 79-189 7.44e-15

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 72.72  E-value: 7.44e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  79 DHIEQLLNAGRNEEAlkmIEARQQASRKIPgTDVQLMFQHARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAA 158
Cdd:COG3914    83 LAALLLQALGRYEEA---LALYRRALALNP-DNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRR 158

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1773748090 159 RGELNQAQDALNMALRADPNYAAARSNLGDI 189
Cdd:COG3914   159 LGRLEEAIAALRRALELDPDNAEALNNLGNA 189
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 84-186 1.15e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 69.25  E-value: 1.15e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  84 LLNAGRNEEAlkmIEARQQASRKIPGtDVQLMFQHARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGELN 163
Cdd:COG3914   122 LLALGRLEEA---LAALRRALALNPD-FAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLE 197

                          90       100
                  ....*....|....*....|...
gi 1773748090 164 QAQDALNMALRADPNYAAARSNL 186
Cdd:COG3914   198 EAIAAYRRALELDPDNADAHSNL 220
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 82-189 7.47e-13

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 66.94  E-value: 7.47e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  82 EQLLNAGRNEEALKMIEARQQASRKIPGTDVQLMFQHARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGE 161
Cdd:COG3914    48 LAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGR 127

                          90       100
                  ....*....|....*....|....*...
gi 1773748090 162 LNQAQDALNMALRADPNYAAARSNLGDI 189
Cdd:COG3914   128 LEEALAALRRALALNPDFAEAYLNLGEA 155
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 61-177 8.00e-11

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 59.87  E-value: 8.00e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  61 AVKPGvdtRLDPTAS--QITDHIEQLLNAGRNEEALKmieARQQASRKIPgTDVQLMFQHARALAALKRPQEAEAIYAEM 138
Cdd:NF033920  144 VLPPG---QLPATADplAYLRAAQDLEQTGQPEAALA---AYQTATKRWP-DSWLAYFGLGNAAYAAGDYAAAAAAFRQA 216

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1773748090 139 TTRFPELPEPWNNLAVLYAARGELNQAQDALNMALRADP 177
Cdd:NF033920  217 VERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALAP 255
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
84-189 1.22e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 56.55  E-value: 1.22e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  84 LLNAGRNEEAlkmIEARQQASRKIPGtDVQLMFQHARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGELN 163
Cdd:COG0457    52 YLRLGRYEEA---LADYEQALELDPD-DAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYD 127

                          90       100
                  ....*....|....*....|....*.
gi 1773748090 164 QAQDALNMALRADPNYAAARSNLGDI 189
Cdd:COG0457   128 EAIEAYERALELDPDDADALYNLGIA 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 95-192 1.22e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 54.63  E-value: 1.22e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  95 KMIEARQQASRKIPGtDVQLMFQHARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGELNQAQDALNMALR 174
Cdd:COG4235     1 EAIARLRQALAANPN-DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALA 79

                          90
                  ....*....|....*...
gi 1773748090 175 ADPNYAAARSNLGDIQLM 192
Cdd:COG4235    80 LDPDNPEALYLLGLAAFQ 97
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 74-189 1.70e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.43  E-value: 1.70e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  74 ASQITDHIEQLLNAGRNEEALKMIEarqQASRKIPgTDVQLMFQHARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLA 153
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLE---KALELDP-DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLG 79

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1773748090 154 VLYAARGELNQAQDALNMALRADPNYAAARSNLGDI 189
Cdd:COG4783    80 LALLKAGDYDEALALLEKALKLDPEHPEAYLRLARA 115
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
111-187 2.32e-09

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 55.31  E-value: 2.32e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1773748090 111 DVQLMFQHARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGELNQAQDALNMALRADPNYAAARSNLG 187
Cdd:COG4785    72 LAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRG 148
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 111-192 6.12e-09

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 52.89  E-value: 6.12e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090 111 DVQLMFQHARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGELNQAQDALNMALRADPNYAAARSNLGDIQ 190
Cdd:COG4783     3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82


                  ..
gi 1773748090 191 LM 192
Cdd:COG4783    83 LK 84
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
111-189 6.68e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 54.24  E-value: 6.68e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1773748090 111 DVQLMFQHARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGELNQAQDALNMALRADPNYAAARSNLGDI 189
Cdd:COG0457     7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 85-191 9.01e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 54.35  E-value: 9.01e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  85 LNAGRNEEALKMIEArqqaSRKIPGTDVQLMFQHARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGELNQ 164
Cdd:COG2956    87 LKAGLLDRAEELLEK----LLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDE 162

                          90       100
                  ....*....|....*....|....*..
gi 1773748090 165 AQDALNMALRADPNYAAARSNLGDIQL 191
Cdd:COG2956   163 AIEALEKALKLDPDCARALLLLAELYL 189
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 84-179 5.32e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.19  E-value: 5.32e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  84 LLNAGRNEEALKMIearQQASRKIPGtDVQLMFQHARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGELN 163
Cdd:COG4783    48 LLQLGDLDEAIVLL---HEALELDPD-EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPD 123

                          90
                  ....*....|....*.
gi 1773748090 164 QAQDALNMALRADPNY 179
Cdd:COG4783   124 EAIAALEKALELDPDD 139
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 117-192 5.90e-08

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 50.34  E-value: 5.90e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1773748090 117 QHARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGELNQAQDALNMALRADPNYAAARSNLGDIQLM 192
Cdd:COG5010    59 PSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLS 134
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
121-191 1.37e-07

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 47.86  E-value: 1.37e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1773748090 121 ALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGELNQAQdALNMALRADPNYAAARSNLGDIQL 191
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLL 70
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 89-189 4.30e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.34  E-value: 4.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  89 RNEEALKMIEARQQASRKIPGtDVQLMFQHARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGELNQAQDA 168
Cdd:COG2956   122 QEGDWEKAIEVLERLLKLGPE-NAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAA 200

                          90       100
                  ....*....|....*....|.
gi 1773748090 169 LNMALRADPNYAAARSNLGDI 189
Cdd:COG2956   201 LERALEQDPDYLPALPRLAEL 221
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 84-183 1.05e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.54  E-value: 1.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  84 LLNAGRNEEAlkmIEARQQASRKIPGtDVQLMFQHARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGELN 163
Cdd:COG4235    27 YLRLGRYDEA---LAAYEKALRLDPD-NADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYA 102

                          90       100
                  ....*....|....*....|
gi 1773748090 164 QAQDALNMALRADPNYAAAR 183
Cdd:COG4235   103 EAIAAWQKLLALLPADAPAR 122
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 85-189 4.85e-06

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 47.00  E-value: 4.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  85 LNAGRNEEALKMIEARQQASRKIPGTDVQLMFQHARAlaalKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGELNQ 164
Cdd:TIGR02917 408 LSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRS----GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAK 483

                          90       100
                  ....*....|....*....|....*
gi 1773748090 165 AQDALNMALRADPNYAAARSNLGDI 189
Cdd:TIGR02917 484 AREAFEKALSIEPDFFPAAANLARI 508
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 88-191 5.18e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.26  E-value: 5.18e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  88 GRNEEAlkmIEARQQAsRKIPGTDVQLMFQHARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGELNQAQD 167
Cdd:COG2956    56 GEYDRA---IRIHQKL-LERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIE 131

                          90       100
                  ....*....|....*....|....
gi 1773748090 168 ALNMALRADPNYAAARSNLGDIQL 191
Cdd:COG2956   132 VLERLLKLGPENAHAYCELAELYL 155
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 85-189 5.95e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 45.88  E-value: 5.95e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  85 LNAGRNEEALKMIEARQQASRKIPGTdVQLMFQHARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGELNQ 164
Cdd:COG2956    16 LNYLLNGQPDKAIDLLEEALELDPET-VEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDR 94

                          90       100
                  ....*....|....*....|....*
gi 1773748090 165 AQDALNMALRADPNYAAARSNLGDI 189
Cdd:COG2956    95 AEELLEKLLELDPDDAEALRLLAEI 119
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
83-191 1.08e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 44.91  E-value: 1.08e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  83 QLLNAGRNEEALKMIEARQQASRKIPGTDVQLMFQHARALAALKRPQEAEAIYAEMTTRF------PELPEPWNNLAVLY 156
Cdd:COG4785     4 LALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIdralalPDLAQLYYERGVAY 83

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 1773748090 157 AARGELNQAQDALNMALRADPNYAAARSNLGDIQL 191
Cdd:COG4785    84 DSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYL 118
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 84-177 1.65e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 43.80  E-value: 1.65e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  84 LLNAGRNEEALKMIEarqQASRKIPGtDVQLMFQHARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGELN 163
Cdd:COG5010    64 YNKLGDFEESLALLE---QALQLDPN-NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD 139

                          90
                  ....*....|....
gi 1773748090 164 QAQDALNMALRADP 177
Cdd:COG5010   140 EAKAALQRALGTSP 153
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
82-226 1.66e-05

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 44.49  E-value: 1.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  82 EQLLNAGRNEEAlkmIEARQQASRKIPGTDVQLMFQHARALAALKRPQEA-----EAIYAEMTTRFPELPEPwnnLAVLY 156
Cdd:COG4700    97 DALLELGRYDEA---IELYEEALTGIFADDPHILLGLAQALFELGRYAEAletleKLIAKNPDFKSSDAHLL---YARAL 170

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090 157 AARGELNQAQDALNMALRADPNYaAARSNLGDIQlmitLRSYRQEAARgvpgmkekaQELDKLLKDKSHS 226
Cdd:COG4700   171 EALGDLEAAEAELEALARRYSGP-EARYRYAKFL----ARQGRTAEAK---------ELLEEILDEAKHM 226
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
84-178 1.98e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.08  E-value: 1.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  84 LLNAGRNEEALKMIEarqQASRKIPGtDVQLMFQHARALAALKRPQEAEAiYAEMTTRFPELPEPWNNLAVLYAARGELN 163
Cdd:COG3063     2 YLKLGDLEEAEEYYE---KALELDPD-NADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYD 76

                          90
                  ....*....|....*
gi 1773748090 164 QAQDALNMALRADPN 178
Cdd:COG3063    77 EALAYLERALELDPS 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
84-204 2.68e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.84  E-value: 2.68e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  84 LLNAGRNEEALKMIEArqqaSRKIPGTDVQLMFQHARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGELN 163
Cdd:COG0457    86 LQALGRYEEALEDYDK----ALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYE 161

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 1773748090 164 QAQDALNMALRADPNYAAARSNLGDIQLMITLRSYRQEAAR 204
Cdd:COG0457   162 EALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLA 202
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 83-183 4.03e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 41.52  E-value: 4.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  83 QLLNAGRNEEAlkmIEARQQASRKIPGTDV--QLMFQHARALAALKRPQEAEAIYAEMTTRFPE---LPEPWNNLAVLYA 157
Cdd:COG1729     2 ALLKAGDYDEA---IAAFKAFLKRYPNSPLapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYL 78

                          90       100
                  ....*....|....*....|....*.
gi 1773748090 158 ARGELNQAQDALNMALRADPNYAAAR 183
Cdd:COG1729    79 ELGDYDKARATLEELIKKYPDSEAAK 104
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
143-192 1.08e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 41.92  E-value: 1.08e-04
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 1773748090 143 PELPEPWNNLAVLYAARGELNQAQDALNMALRADPNYAAARSNLGDIQLM 192
Cdd:COG0457     5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLR 54
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 119-191 1.74e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 41.64  E-value: 1.74e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1773748090 119 ARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGELNQAQDALNMALRADPNYAAARSNLGDIQL 191
Cdd:COG2956    15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
TPR_19 pfam14559
Tetratricopeptide repeat;
126-189 1.88e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 38.33  E-value: 1.88e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1773748090 126 KRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGELNQAQDALNMALRADPNYAAARSNLGDI 189
Cdd:pfam14559   2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 82-181 7.93e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 39.71  E-value: 7.93e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  82 EQLLNAGRNEEALKMIEARQQASRKipgtDVQLMFQHARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGE 161
Cdd:COG2956   152 ELYLEQGDYDEAIEALEKALKLDPD----CARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGD 227

                          90       100
                  ....*....|....*....|
gi 1773748090 162 LNQAQDALNMALRADPNYAA 181
Cdd:COG2956   228 PEEALELLRKALELDPSDDL 247
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 67-209 9.83e-04

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 39.68  E-value: 9.83e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090   67 DTRLdpTASQITDHIEQLLNAGRNEEALKMIEaRQQASRKIpgtDVQLmfqhARALAALKRPQEAEAIYAEMTTRFPELP 146
Cdd:PRK11447   568 AQRL--QSDQVLETANRLRDSGKEAEAEALLR-QQPPSTRI---DLTL----ADWAQQRGDYAAARAAYQRVLTREPGNA 637

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1773748090  147 EPWNNLAVLYAARGELNQAQDALNMALRA---DPN----YAAARSNLGDIQLMI-TLRSYRQEAARGVPGM 209
Cdd:PRK11447   638 DARLGLIEVDIAQGDLAAARAQLAKLPATandSLNtqrrVALAWAALGDTAAAQrTFNRLIPQAKSQPPSM 708
TPR_1 pfam00515
Tetratricopeptide repeat;
149-179 1.00e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 35.47  E-value: 1.00e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1773748090 149 WNNLAVLYAARGELNQAQDALNMALRADPNY 179
Cdd:pfam00515   4 LYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 80-191 1.40e-03

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 39.21  E-value: 1.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  80 HIEQLLNAGRNEEALKMIEARQQASRKIPGTDVQLMFQHARALAALkRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAAR 159
Cdd:COG3914    13 AAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAA-LLALAAGEAAAAAAALLLLAALLELAALLLQAL 91

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1773748090 160 GELNQAQDALNMALRADPNYAAARSNLGDIQL 191
Cdd:COG3914    92 GRYEEALALYRRALALNPDNAEALFNLGNLLL 123
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 116-180 2.79e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 35.39  E-value: 2.79e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1773748090 116 FQHARALAALKRPQEAEAIYAEMTTRFPELPEP---WNNLAVLYAARGELNQAQDALNMALRADPNYA 180
Cdd:pfam13432   1 LALARAALRAGDYDDAAAALEAALARFPESPDAaaaLLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 88-191 3.47e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 38.14  E-value: 3.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090  88 GRNEEALKMIEarqQASRKIPgTDVQLMFQHARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGELNQAQD 167
Cdd:TIGR02917 547 GNEEEAVAWLE---KAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVS 622

                          90       100
                  ....*....|....*....|....
gi 1773748090 168 ALNMALRADPNYAAARSNLGDIQL 191
Cdd:TIGR02917 623 SFKKLLALQPDSALALLLLADAYA 646
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 146-179 4.53e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 33.96  E-value: 4.53e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1773748090  146 PEPWNNLAVLYAARGELNQAQDALNMALRADPNY 179
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_11 pfam13414
TPR repeat;
155-192 6.09e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 33.60  E-value: 6.09e-03
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 1773748090 155 LYAARGELNQAQDALNMALRADPNYAAARSNLGDIQLM 192
Cdd:pfam13414   3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 82-178 8.87e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 36.98  E-value: 8.87e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1773748090   82 EQLLNAGRNEEALkmiEARQQASRKIPGtDVQLMFQHARALAALKRPQEAEAIYAEMTTRFPELPEPWNNLAVLYAARGE 161
Cdd:PRK11447   469 EALENQGKWAQAA---ELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDR 544

                           90
                   ....*....|....*..
gi 1773748090  162 LNQAQDALNMALRADPN 178
Cdd:PRK11447   545 DRAALAHLNTLPRAQWN 561
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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