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Conserved domains on  [gi|1777968813|gb|QGN53123|]
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YraN family protein [Glaesserella parasuis]

Protein Classification

YraN family protein( domain architecture ID 10013993)

YraN family protein is a predicted endonuclease of the the PDDEXK nuclease superfamily

CATH:  3.40.960.10
Gene Ontology:  GO:0003677|GO:0004519
PubMed:  16011798|15972856
SCOP:  3000104

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK12497 PRK12497
YraN family protein;
1-112 3.62e-50

YraN family protein;


:

Pssm-ID: 237119  Cd Length: 119  Bit Score: 154.57  E-value: 3.62e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   1 MRSQGAYFEQQAKIFLEKNGLRFIAQNQQFKCGELDLIMQEGDTLIFVEVRQRKNAYFGSAVESIDFRKQQKWQKAANLW 80
Cdd:PRK12497    5 KRQLGAAGEDLAARYLESKGLRILARNFRCRFGEIDLIARDGDTLVFVEVKTRRSDRFGGAAEAVTPRKQRRLRRAAQLW 84

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1777968813  81 LAQRNqSLDTANCRFDVVAFEGDCSPI-WIKNF 112
Cdd:PRK12497   85 LARHP-SLADLPCRFDVVAIGGPGPEIeHIKNA 116
 
Name Accession Description Interval E-value
PRK12497 PRK12497
YraN family protein;
1-112 3.62e-50

YraN family protein;


Pssm-ID: 237119  Cd Length: 119  Bit Score: 154.57  E-value: 3.62e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   1 MRSQGAYFEQQAKIFLEKNGLRFIAQNQQFKCGELDLIMQEGDTLIFVEVRQRKNAYFGSAVESIDFRKQQKWQKAANLW 80
Cdd:PRK12497    5 KRQLGAAGEDLAARYLESKGLRILARNFRCRFGEIDLIARDGDTLVFVEVKTRRSDRFGGAAEAVTPRKQRRLRRAAQLW 84

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1777968813  81 LAQRNqSLDTANCRFDVVAFEGDCSPI-WIKNF 112
Cdd:PRK12497   85 LARHP-SLADLPCRFDVVAIGGPGPEIeHIKNA 116
YraN COG0792
Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 ...
 2-111 6.79e-45

Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family [Replication, recombination and repair];


Pssm-ID: 440555  Cd Length: 116  Bit Score: 141.42  E-value: 6.79e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   2 RSQGAYFEQQAKIFLEKNGLRFIAQNQQFKCGELDLIMQEGDTLIFVEVRQRKNAYFGSAVESIDFRKQQKWQKAANLWL 81
Cdd:COG0792     3 RELGRRGEDLAARYLERKGYRILARNWRCRGGEIDLIARDGDTLVFVEVKTRRSARFGGPAEAVTPRKQRRLRRAAEAYL 82

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1777968813  82 AQRNQSLDTAnCRFDVVAFEGDCSPI-WIKN 111
Cdd:COG0792    83 ARHPGLADLP-VRFDVVAVTGDGREIeHIEN 112
TIGR00252 TIGR00252
TIGR00252 family protein; the scores for Mycobacterium tuberculosis and Treponema pallidum are ...
 2-113 3.07e-44

TIGR00252 family protein; the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment [Hypothetical proteins, Conserved]


Pssm-ID: 129354  Cd Length: 119  Bit Score: 140.04  E-value: 3.07e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   2 RSQGAYFEQQAKIFLEKNGLRFIAQNQQFKCGELDLIMQEGDTLIFVEVRQRKNAYFGSAVESIDFRKQQKWQKAANLWL 81
Cdd:TIGR00252   6 TQLGQAGESQARAWLEQKGLKFIAANWNSPWGEIDLIMHDTKTIAFVEVRTRSGGNYGGALLSVNARKQEKILQTANLWL 85

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1777968813  82 AQRNQSLDTANCRFDVVAFEGDCSPI-WIKNFL 113
Cdd:TIGR00252  86 ASQNPSWSDWNCRFDVMAFFPTGENAeWIFANL 118
UPF0102 pfam02021
Uncharacterized protein family UPF0102; The function of this family is unknown.
 9-100 2.69e-39

Uncharacterized protein family UPF0102; The function of this family is unknown.


Pssm-ID: 460416 [Multi-domain]  Cd Length: 92  Bit Score: 126.36  E-value: 2.69e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   9 EQQAKIFLEKNGLRFIAQNQQFKCGELDLIMQEGDTLIFVEVRQRKNAYFGSAVESIDFRKQQKWQKAANLWLAQRNQSL 88
Cdd:pfam02021   2 EDLAARYLEAKGYRILARNWRCRFGEIDIIARDGDTLVFVEVKTRSSTRFGSPAEAVTPRKQRRLRRAAAAYLAEHPLYA 81

                          90
                  ....*....|..
gi 1777968813  89 DTaNCRFDVVAF 100
Cdd:pfam02021  82 DL-PCRFDVIAV 92
PoNe_Nuclease cd20736
Polymorphic Nuclease effector (PoNe) co-occurring with an N-terminal nuclease domain; The ...
 5-81 9.10e-19

Polymorphic Nuclease effector (PoNe) co-occurring with an N-terminal nuclease domain; The DNase toxin domain called PoNe (Polymorphic Nuclease effector) belongs to a diverse superfamily of PD-(D/E)xK phosphodiesterases, and is associated with several toxin delivery systems including type V, type VI, and type VII. PoNe toxicity is antagonized by cognate immunity proteins (PoNi) containing DUF1911 and DUF1910 domains. This subfamily contains proteins with PoNe domains that typically co-occur with nuclease N-terminal domains such as endonucleases involved in methyl-directed DNA mismatch repair in gram negative bacteria.


Pssm-ID: 410645 [Multi-domain]  Cd Length: 80  Bit Score: 73.81  E-value: 9.10e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1777968813   5 GAYFEQQAKIFLEKNGLRFIAQNQQFKCGELDLIMQ--EGDTLIFVEVRQRKNAYFGSAVESIDFRKQQKWQKAANLWL 81
Cdd:cd20736     2 GAWGEDIAARYLREKGYRILERNYRGGGGEIDLIARdpETGTIVFVEVKTRRSDKFGHPGEAVTRAKQRRLIKAALEYL 80
 
Name Accession Description Interval E-value
PRK12497 PRK12497
YraN family protein;
1-112 3.62e-50

YraN family protein;


Pssm-ID: 237119  Cd Length: 119  Bit Score: 154.57  E-value: 3.62e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   1 MRSQGAYFEQQAKIFLEKNGLRFIAQNQQFKCGELDLIMQEGDTLIFVEVRQRKNAYFGSAVESIDFRKQQKWQKAANLW 80
Cdd:PRK12497    5 KRQLGAAGEDLAARYLESKGLRILARNFRCRFGEIDLIARDGDTLVFVEVKTRRSDRFGGAAEAVTPRKQRRLRRAAQLW 84

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1777968813  81 LAQRNqSLDTANCRFDVVAFEGDCSPI-WIKNF 112
Cdd:PRK12497   85 LARHP-SLADLPCRFDVVAIGGPGPEIeHIKNA 116
YraN COG0792
Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 ...
 2-111 6.79e-45

Predicted endonuclease distantly related to archaeal Holliday junction resolvase, YraN/UPF0102 family [Replication, recombination and repair];


Pssm-ID: 440555  Cd Length: 116  Bit Score: 141.42  E-value: 6.79e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   2 RSQGAYFEQQAKIFLEKNGLRFIAQNQQFKCGELDLIMQEGDTLIFVEVRQRKNAYFGSAVESIDFRKQQKWQKAANLWL 81
Cdd:COG0792     3 RELGRRGEDLAARYLERKGYRILARNWRCRGGEIDLIARDGDTLVFVEVKTRRSARFGGPAEAVTPRKQRRLRRAAEAYL 82

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1777968813  82 AQRNQSLDTAnCRFDVVAFEGDCSPI-WIKN 111
Cdd:COG0792    83 ARHPGLADLP-VRFDVVAVTGDGREIeHIEN 112
TIGR00252 TIGR00252
TIGR00252 family protein; the scores for Mycobacterium tuberculosis and Treponema pallidum are ...
 2-113 3.07e-44

TIGR00252 family protein; the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment [Hypothetical proteins, Conserved]


Pssm-ID: 129354  Cd Length: 119  Bit Score: 140.04  E-value: 3.07e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   2 RSQGAYFEQQAKIFLEKNGLRFIAQNQQFKCGELDLIMQEGDTLIFVEVRQRKNAYFGSAVESIDFRKQQKWQKAANLWL 81
Cdd:TIGR00252   6 TQLGQAGESQARAWLEQKGLKFIAANWNSPWGEIDLIMHDTKTIAFVEVRTRSGGNYGGALLSVNARKQEKILQTANLWL 85

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1777968813  82 AQRNQSLDTANCRFDVVAFEGDCSPI-WIKNFL 113
Cdd:TIGR00252  86 ASQNPSWSDWNCRFDVMAFFPTGENAeWIFANL 118
UPF0102 pfam02021
Uncharacterized protein family UPF0102; The function of this family is unknown.
 9-100 2.69e-39

Uncharacterized protein family UPF0102; The function of this family is unknown.


Pssm-ID: 460416 [Multi-domain]  Cd Length: 92  Bit Score: 126.36  E-value: 2.69e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   9 EQQAKIFLEKNGLRFIAQNQQFKCGELDLIMQEGDTLIFVEVRQRKNAYFGSAVESIDFRKQQKWQKAANLWLAQRNQSL 88
Cdd:pfam02021   2 EDLAARYLEAKGYRILARNWRCRFGEIDIIARDGDTLVFVEVKTRSSTRFGSPAEAVTPRKQRRLRRAAAAYLAEHPLYA 81

                          90
                  ....*....|..
gi 1777968813  89 DTaNCRFDVVAF 100
Cdd:pfam02021  82 DL-PCRFDVIAV 92
PRK14673 PRK14673
hypothetical protein; Provisional
 2-103 4.41e-32

hypothetical protein; Provisional


Pssm-ID: 237786  Cd Length: 137  Bit Score: 109.38  E-value: 4.41e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   2 RSQGAYFEQQAKIFLEKNGLRFIAQNQQFKCGELDLIMQEGD-TLIFVEVRQRKNAYFGSAVESIDFRKQQKWQKAANLW 80
Cdd:PRK14673   26 RAVGAAFEDRALAFLQRAGLALVARNYRCRGGEIDLVMRERDgTLVFVEVRARASRRFGGAAASIGARKQRRLVAAALHF 105

                          90       100
                  ....*....|....*....|...
gi 1777968813  81 LAQRNQSldtANCRFDVVAFEGD 103
Cdd:PRK14673  106 LARHGGA---PACRFDVVAFEGG 125
PRK14687 PRK14687
hypothetical protein; Provisional
 4-100 2.47e-25

hypothetical protein; Provisional


Pssm-ID: 237788  Cd Length: 173  Bit Score: 93.54  E-value: 2.47e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   4 QGAYFEQQAKIFLEKNGLRFIAQN-QQFKCGELDLIM----QEGDTLIFVEVRQRKNAYFGSAVESIDFRKQQKWQKAAN 78
Cdd:PRK14687   32 QGGGFEQLACEFLQEQGLILIARNwQQPKVGELDLVMlekgQAWSTLVFAEVRQRKLSGFGDAAASVTAGKQRKIIKTAR 111

                          90       100
                  ....*....|....*....|..
gi 1777968813  79 LWLaQRNQSLDTANCRFDVVAF 100
Cdd:PRK14687  112 YFL-RQHPEYADYECRFDVIAY 132
PRK14675 PRK14675
hypothetical protein; Provisional
 2-99 1.12e-19

hypothetical protein; Provisional


Pssm-ID: 173138  Cd Length: 125  Bit Score: 77.57  E-value: 1.12e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   2 RSQGAYFEQQAKIFLEKNGLRFIAQNQQFKCGELDLIMQEGDTLIFVEVRQRKNAYFGSAVESIDFRKQQKWQKAANLWL 81
Cdd:PRK14675    8 KSLGEIGESIAVTYLKGLRYKIVERNFRCRCGEIDIIARDGKTLVFVEVKTRKNYAYGVPQLAVTPFKQRQISKAALTWL 87

                          90
                  ....*....|....*...
gi 1777968813  82 AQRNQsLDtANCRFDVVA 99
Cdd:PRK14675   88 AKKKL-LD-AEARFDVIA 103
PoNe_Nuclease cd20736
Polymorphic Nuclease effector (PoNe) co-occurring with an N-terminal nuclease domain; The ...
 5-81 9.10e-19

Polymorphic Nuclease effector (PoNe) co-occurring with an N-terminal nuclease domain; The DNase toxin domain called PoNe (Polymorphic Nuclease effector) belongs to a diverse superfamily of PD-(D/E)xK phosphodiesterases, and is associated with several toxin delivery systems including type V, type VI, and type VII. PoNe toxicity is antagonized by cognate immunity proteins (PoNi) containing DUF1911 and DUF1910 domains. This subfamily contains proteins with PoNe domains that typically co-occur with nuclease N-terminal domains such as endonucleases involved in methyl-directed DNA mismatch repair in gram negative bacteria.


Pssm-ID: 410645 [Multi-domain]  Cd Length: 80  Bit Score: 73.81  E-value: 9.10e-19
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1777968813   5 GAYFEQQAKIFLEKNGLRFIAQNQQFKCGELDLIMQ--EGDTLIFVEVRQRKNAYFGSAVESIDFRKQQKWQKAANLWL 81
Cdd:cd20736     2 GAWGEDIAARYLREKGYRILERNYRGGGGEIDLIARdpETGTIVFVEVKTRRSDKFGHPGEAVTRAKQRRLIKAALEYL 80
PRK14682 PRK14682
hypothetical protein; Provisional
 9-114 2.41e-18

hypothetical protein; Provisional


Pssm-ID: 173145  Cd Length: 117  Bit Score: 73.93  E-value: 2.41e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   9 EQQAKIFLEKNGLRFIAQN-QQFKCGELDLIMQEGDTLIFVEVRQRKNAYFGSAVESIDFRKQQKWQKAANLWLaQRNQS 87
Cdd:PRK14682   11 ELQACKFLHTQALEILAHNfKALPYGEIDIIALDKDTLVFIEVKYRSKTKFAQAEEMLTYSKQQKLVNSASIYL-QHNPQ 89

                          90       100
                  ....*....|....*....|....*...
gi 1777968813  88 LDTANCRFDVVAF-EGDCSpiWIKNFLG 114
Cdd:PRK14682   90 YQDYQCRFDLIAInESNIN--WIKNAFG 115
PRK14684 PRK14684
hypothetical protein; Provisional
 9-111 1.04e-17

hypothetical protein; Provisional


Pssm-ID: 173147  Cd Length: 120  Bit Score: 72.38  E-value: 1.04e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   9 EQQAKIFLEKNGLRFIAQNQQFKCGELDLIMQEGDTLIFVEVRQRKNAYFGSAVESIDFRKQQKWQKAANLWLaQRNQSL 88
Cdd:PRK14684   13 EKTACRYLQKQGLSFITKNFRYKQGEIDLIMSDQSMLVFIEVRYRRFSDFIHPVATVTPLKQRRLIKTALHYL-QKHRLL 91

                          90       100
                  ....*....|....*....|...
gi 1777968813  89 DTANCRFDVVAFEGDCSPIWIKN 111
Cdd:PRK14684   92 DKISCRFDIVGITADRQITWIKN 114
PRK14685 PRK14685
hypothetical protein; Provisional
 2-110 1.77e-17

hypothetical protein; Provisional


Pssm-ID: 173148  Cd Length: 177  Bit Score: 73.28  E-value: 1.77e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   2 RSQGAYFEQQAKIFLEKNGLRFIAQNQQFKCGELDLIMQEGDTLIFVEVRQRKNAYFGSAVESIDFRKQQKWQKAANLWL 81
Cdd:PRK14685   42 QRCGQAYESAALRWLARQGLRPLARNLRCRAGEIDLAMRDGEVLVLVEVRARAHAGYGGAAASIGASKQGRLARAAALLL 121

                          90       100       110
                  ....*....|....*....|....*....|..
gi 1777968813  82 A---QRNQSLDTANCRFDVVAFEGDcSPIWIK 110
Cdd:PRK14685  122 PvllRRHWPGAPPPVRFDVVAFEAG-RPHWLR 152
PRK14678 PRK14678
hypothetical protein; Provisional
 2-99 2.46e-16

hypothetical protein; Provisional


Pssm-ID: 173141  Cd Length: 120  Bit Score: 69.13  E-value: 2.46e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   2 RSQGAYFEQQAKIFLEKNGLRFIAQNQQFKCGELDLIMQEGDTLIFVEVRQRKNAYfgsAVESIDFRKQQKWQKAANLWL 81
Cdd:PRK14678    6 RRLGDWGEQVAAAYLERCGYTIIARNWRCRAGEIDIVAREGDQLVFVEVRTRRDQD---ALESITLAKRQRLVALAYHYL 82

                          90
                  ....*....|....*...
gi 1777968813  82 AQRNQSLDTAnCRFDVVA 99
Cdd:PRK14678   83 AAHDLPATTP-WRIDVIA 99
PRK14674 PRK14674
hypothetical protein; Provisional
 5-101 6.44e-16

hypothetical protein; Provisional


Pssm-ID: 184788  Cd Length: 133  Bit Score: 68.07  E-value: 6.44e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   5 GAYFEQQAKIFLEKNGLRFIAQNQQFKCGELDLIMQEGDTLIFVEVRQRKNAYFGSAVESIDFRKQQKWQKAANLWLaQR 84
Cdd:PRK14674    8 GQWAEQTALKLLKEQNYEWVASNYHSRRGEVDLIVKRGNELIFVEVKARGQGNYGQACEMVTLSKQKKIIKTAMRFL-QR 86

                          90
                  ....*....|....*..
gi 1777968813  85 NQSLDTANCRFDVVAFE 101
Cdd:PRK14674   87 YPSYQDFYCRFDVICFD 103
PRK14680 PRK14680
hypothetical protein; Provisional
 5-98 1.12e-15

hypothetical protein; Provisional


Pssm-ID: 173143  Cd Length: 134  Bit Score: 67.55  E-value: 1.12e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   5 GAYFEQQAKIFLEKNGLRFIAQNQQFKCGELDLIMQEGDTLIFVEVRQRKNAYFGSAVESIDFRKQQKWQKAANLWLAQR 84
Cdd:PRK14680    9 GQHGEDAAAALLQRTGHRILARNWRHGGLELDIVCEDGDTIVFVEVKTRAAHGLTSPTDALTHSKRHRLIRAARAWLAAH 88

                          90
                  ....*....|....
gi 1777968813  85 nQSLDTAnCRFDVV 98
Cdd:PRK14680   89 -DAWDKP-CRFDLV 100
PRK14681 PRK14681
hypothetical protein; Provisional
 5-99 2.01e-15

hypothetical protein; Provisional


Pssm-ID: 237787  Cd Length: 158  Bit Score: 67.64  E-value: 2.01e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   5 GAYFEQQAKIFLEKNGLRFIAQNQQFKCGELDLIM-QEGDTLIFVEVRQRKNAYFGSAVESIDFRKQQKWQKAANLWLAQ 83
Cdd:PRK14681   46 GALGEQYAAAWLEEHGWTTLSRNWHCRYGELDIVAlNPEYTIVFVEVKTRRSMHYGYPQEAVTAAKQHNLRKAACDWLLE 125

                          90
                  ....*....|....*.
gi 1777968813  84 RNQSLDTANCRFDVVA 99
Cdd:PRK14681  126 RRNRVPHIGVRFDVVT 141
PRK14688 PRK14688
hypothetical protein; Provisional
 2-101 4.38e-11

hypothetical protein; Provisional


Pssm-ID: 184792  Cd Length: 121  Bit Score: 55.44  E-value: 4.38e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   2 RSQGAYFEQQAKIFLEKNGLRFIAQNQQFKCGELDLIMQEGDTLIFVEVRQRKNAYFGSAVESIDFRKQQKWQKAANLWL 81
Cdd:PRK14688    6 KETGEFGEKLAAEYLKGMGYSIIQTNCRLPEGEIDIVGQDGEYLVFIEVRTKRRLGYGLPAESVTPRKKAHLMASAESYI 85

                          90       100
                  ....*....|....*....|
gi 1777968813  82 AQRNqsLDTANCRFDVVAFE 101
Cdd:PRK14688   86 QKHR--LEHFPCRIDFVSVD 103
PRK14676 PRK14676
hypothetical protein; Provisional
 9-102 1.72e-10

hypothetical protein; Provisional


Pssm-ID: 173139  Cd Length: 117  Bit Score: 53.80  E-value: 1.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   9 EQQAKIFlEKNGLRFIAQNQQFKCGELDLIMQEGDTLIFVEVRQRKNayFGSAVESIDFRKQQKWQKAANLWLAQRNQSL 88
Cdd:PRK14676   15 EAVARIY-DRSGRPVAARRWRGVSGEIDLIAREGAEVIFIEVKKSKS--HAAAAARLSRRQMDRIYGAASEFLAGEPRGQ 91

                          90
                  ....*....|....
gi 1777968813  89 DTANcRFDVVAFEG 102
Cdd:PRK14676   92 LTAS-RFDVALVDA 104
PRK14679 PRK14679
hypothetical protein; Provisional
 2-98 1.03e-09

hypothetical protein; Provisional


Pssm-ID: 173142  Cd Length: 128  Bit Score: 52.21  E-value: 1.03e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   2 RSQGAyfEQQAKIFLEKNGLRFIAQNQQFKCGELDLIMQEGDTLIFVEVRQRknAYFGSAVESIDFRKQQKWQKAANLWL 81
Cdd:PRK14679   17 RGLSA--EGLALLALMLKGYRPLARRFAAAGGEIDLIVRRGRTIAFVEVKAR--ATLDAAATAIDARKRARFSRAARAWL 92

                          90
                  ....*....|....*..
gi 1777968813  82 AqRNQSLDTANCRFDVV 98
Cdd:PRK14679   93 A-RHPLAAGATLRADAV 108
PRK14686 PRK14686
hypothetical protein; Provisional
 9-99 1.07e-09

hypothetical protein; Provisional


Pssm-ID: 184791  Cd Length: 119  Bit Score: 51.69  E-value: 1.07e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   9 EQQAKIFLEKNGLRFIAQNQQFKCGELDLIMQEGDTLIFVEVRQRKNAYFGSAVesiDFRKQQKWQ---KAANLWLAQRN 85
Cdd:PRK14686   12 EDLAVEFLIKKGYTILERNYRFQKAEIDIIAQKGNILVIVEVKTRSSSDFGNPQ---DFVKPKKIQllvKAVNHYIEDKD 88

                          90
                  ....*....|....
gi 1777968813  86 qslDTANCRFDVVA 99
Cdd:PRK14686   89 ---LDVEIRFDIIA 99
PRK14677 PRK14677
hypothetical protein; Provisional
 9-84 9.43e-09

hypothetical protein; Provisional


Pssm-ID: 184789  Cd Length: 107  Bit Score: 49.13  E-value: 9.43e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1777968813   9 EQQAKIFLEKNGLRFIAQNQQFKCGELDLIMQEGDTLIFVEVRQRKNayFGSAVESIDFRKQQKWQKAANLWLAQR 84
Cdd:PRK14677    7 EELACKFLKKKGYKILERNYRTKYGEIDIVARDGREIVFVEVKSGSG--KVDPLERIDLKKVRNLEQTARFYMIQN 80
PRK14689 PRK14689
hypothetical protein; Provisional
 1-82 1.35e-08

hypothetical protein; Provisional


Pssm-ID: 173152  Cd Length: 124  Bit Score: 48.96  E-value: 1.35e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1777968813   1 MRSQGAYFEQQAKIFLEKNGLRFIAQNQQFKCGELDLIMQEGDTLIFVEVRQRKN-AYFGSAVESIDFRKQQKWQKAANL 79
Cdd:PRK14689    7 SQALGAWAEERVLRLLQRRGWRLLDRNWSCRWGELDLVLEKQQRLLVVEVKGRRRrGLDGWGLAAFHPRKRRRLARAINC 86


                  ...
gi 1777968813  80 WLA 82
Cdd:PRK14689   87 WRA 89
PRK14683 PRK14683
hypothetical protein; Provisional
 28-100 1.99e-03

hypothetical protein; Provisional


Pssm-ID: 173146  Cd Length: 122  Bit Score: 35.25  E-value: 1.99e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1777968813  28 QQFKC--GELDLIMQEGDTLIFVEVrqrKNAYFGSAVeSIDFRKQQKWQKAANLWLAQRNQsLDTANCRFDVVAF 100
Cdd:PRK14683   37 HRYRCplGEIDIIAHKNKQLVFIEV---KTSLFNKNI-PITYKQQKSILKSAKYFIAFHRK-FANYSIRFDLYFF 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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