50S ribosomal protein L29 [Variovorax paradoxus]
Protein Classification
50S ribosomal protein L29( domain architecture ID 10000811)
50S ribosomal protein L29 binds 23S rRNA and is not essential for growth; it is one of the proteins that surrounds the polypeptide exit tunnel on the outside of the 50s ribosomal subunit
List of domain hits
| Name | Accession | Description | Interval | E-value | ||
| RpmC | COG0255 | Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L29 ... |
3-62 | 3.47e-17 | ||
Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L29 is part of the Pathway/BioSystem: Ribosome 50S subunit : Pssm-ID: 440025 [Multi-domain] Cd Length: 65 Bit Score: 67.84 E-value: 3.47e-17
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| Name | Accession | Description | Interval | E-value | ||
| RpmC | COG0255 | Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L29 ... |
3-62 | 3.47e-17 | ||
Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L29 is part of the Pathway/BioSystem: Ribosome 50S subunit Pssm-ID: 440025 [Multi-domain] Cd Length: 65 Bit Score: 67.84 E-value: 3.47e-17
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| Ribosomal_L29_HIP | cd00427 | Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called ... |
7-61 | 3.03e-15 | ||
Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulation of blood coagulation. It has also been shown to inhibit apoptosis in cancer cells. Pssm-ID: 238243 Cd Length: 57 Bit Score: 62.51 E-value: 3.03e-15
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| Ribosomal_L29 | pfam00831 | Ribosomal L29 protein; |
7-60 | 5.45e-15 | ||
Ribosomal L29 protein; Pssm-ID: 459954 Cd Length: 56 Bit Score: 62.03 E-value: 5.45e-15
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| L29 | TIGR00012 | ribosomal protein L29; This model describes a ribosomal large subunit protein, called L29 in ... |
7-60 | 3.41e-09 | ||
ribosomal protein L29; This model describes a ribosomal large subunit protein, called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits. [Protein synthesis, Ribosomal proteins: synthesis and modification] Pssm-ID: 272854 Cd Length: 55 Bit Score: 47.23 E-value: 3.41e-09
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| PRK14549 | PRK14549 | 50S ribosomal protein L29P; Provisional |
3-65 | 4.84e-04 | ||
50S ribosomal protein L29P; Provisional Pssm-ID: 237751 Cd Length: 69 Bit Score: 34.58 E-value: 4.84e-04
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| Name | Accession | Description | Interval | E-value | ||
| RpmC | COG0255 | Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L29 ... |
3-62 | 3.47e-17 | ||
Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L29 is part of the Pathway/BioSystem: Ribosome 50S subunit Pssm-ID: 440025 [Multi-domain] Cd Length: 65 Bit Score: 67.84 E-value: 3.47e-17
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| Ribosomal_L29_HIP | cd00427 | Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called ... |
7-61 | 3.03e-15 | ||
Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulation of blood coagulation. It has also been shown to inhibit apoptosis in cancer cells. Pssm-ID: 238243 Cd Length: 57 Bit Score: 62.51 E-value: 3.03e-15
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| Ribosomal_L29 | pfam00831 | Ribosomal L29 protein; |
7-60 | 5.45e-15 | ||
Ribosomal L29 protein; Pssm-ID: 459954 Cd Length: 56 Bit Score: 62.03 E-value: 5.45e-15
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| L29 | TIGR00012 | ribosomal protein L29; This model describes a ribosomal large subunit protein, called L29 in ... |
7-60 | 3.41e-09 | ||
ribosomal protein L29; This model describes a ribosomal large subunit protein, called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits. [Protein synthesis, Ribosomal proteins: synthesis and modification] Pssm-ID: 272854 Cd Length: 55 Bit Score: 47.23 E-value: 3.41e-09
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| PRK14549 | PRK14549 | 50S ribosomal protein L29P; Provisional |
3-65 | 4.84e-04 | ||
50S ribosomal protein L29P; Provisional Pssm-ID: 237751 Cd Length: 69 Bit Score: 34.58 E-value: 4.84e-04
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