NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1796320921|gb|QHE85278|]
View 

outer membrane protein assembly factor BamC [Hydrogenophaga sp. BPS33]

Protein Classification

outer membrane protein assembly factor BamC( domain architecture ID 10007196)

outer membrane protein assembly factor BamC is part of the beta-barrel assembly machinery (BAM), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
BamC COG3317
Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope ...
 10-369 5.10e-148

Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442546  Cd Length: 354  Bit Score: 422.07  E-value: 5.10e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796320921  10 FTRIGLLATATVLAAGCSMLQE----DKIDYKSAQRGSTLDVPPDLTQLSRDSRYTVP-GGVVTASGYQTSQPSQATAAt 84
Cdd:COG3317     3 SVRLVLLLLLVLLLAGCSSLQRyfrsGKVDYLSAPKLPPLEVPPDLTAPSQDDRYDIPaGGAATGSEYDIRPPAQVLPL- 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796320921  85 taattIGDVRIERAGSQRWLVVDRPADKLWTPLRDFWQENGFLLDLDQESLGIMETDWAENRAKLPqDFIRSTIgkvFDS 164
Cdd:COG3317    82 -----VDGVRIERSGDQRWLVVDASPEQLWPQLREFWQENGFTIASEDPAAGVMETDWAENRAKIP-DFIRRTL---LDG 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796320921 165 LYSTGERDRFRTRLERTANGGTEIYISHRGMVEVysNKDKDQTVWQPRPADVELETEFLRRLMVKLGVTEAQSQAIAASA 244
Cdd:COG3317   153 LYSTGERDRFRTRVERGVGGTTEIYVSHRGMEEV--GDQKDSTVWQPRPADPRLEAEMLNRLMVYLGADEEQAAAALAAA 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796320921 245 PAQQAVARVTQVNN-APVVQFDDNFDRAWRRVGLSLDRTGFTVEDRDRSKGLYFVRYIEPvMDTKQPGFFARMFGaSKTE 323
Cdd:COG3317   231 QVGGIRVQLGKDADgLPVLIVRAPFDRAWRRVGLALDRVGFTVEDRDRSQGLYYVRYVDP-DDGEKPGFWSRLFG-SDPE 308

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1796320921 324 AATERYRVAVTSTDNKTTVAVLDNQGRPDGSAAAQRIAKLLAEDLK 369
Cdd:COG3317   309 LKAGDYRVQVGDLGNRTSVTVLDAKGKPLTSDTADRILSLLQAQLR 354
 
Name Accession Description Interval E-value
BamC COG3317
Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope ...
 10-369 5.10e-148

Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442546  Cd Length: 354  Bit Score: 422.07  E-value: 5.10e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796320921  10 FTRIGLLATATVLAAGCSMLQE----DKIDYKSAQRGSTLDVPPDLTQLSRDSRYTVP-GGVVTASGYQTSQPSQATAAt 84
Cdd:COG3317     3 SVRLVLLLLLVLLLAGCSSLQRyfrsGKVDYLSAPKLPPLEVPPDLTAPSQDDRYDIPaGGAATGSEYDIRPPAQVLPL- 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796320921  85 taattIGDVRIERAGSQRWLVVDRPADKLWTPLRDFWQENGFLLDLDQESLGIMETDWAENRAKLPqDFIRSTIgkvFDS 164
Cdd:COG3317    82 -----VDGVRIERSGDQRWLVVDASPEQLWPQLREFWQENGFTIASEDPAAGVMETDWAENRAKIP-DFIRRTL---LDG 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796320921 165 LYSTGERDRFRTRLERTANGGTEIYISHRGMVEVysNKDKDQTVWQPRPADVELETEFLRRLMVKLGVTEAQSQAIAASA 244
Cdd:COG3317   153 LYSTGERDRFRTRVERGVGGTTEIYVSHRGMEEV--GDQKDSTVWQPRPADPRLEAEMLNRLMVYLGADEEQAAAALAAA 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796320921 245 PAQQAVARVTQVNN-APVVQFDDNFDRAWRRVGLSLDRTGFTVEDRDRSKGLYFVRYIEPvMDTKQPGFFARMFGaSKTE 323
Cdd:COG3317   231 QVGGIRVQLGKDADgLPVLIVRAPFDRAWRRVGLALDRVGFTVEDRDRSQGLYYVRYVDP-DDGEKPGFWSRLFG-SDPE 308

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1796320921 324 AATERYRVAVTSTDNKTTVAVLDNQGRPDGSAAAQRIAKLLAEDLK 369
Cdd:COG3317   309 LKAGDYRVQVGDLGNRTSVTVLDAKGKPLTSDTADRILSLLQAQLR 354
Lipoprotein_18 pfam06804
NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known ...
 45-360 7.90e-53

NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be nonessential.


Pssm-ID: 429129  Cd Length: 297  Bit Score: 176.73  E-value: 7.90e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796320921  45 LDVPPDLTQLSRDSRYTVPGGV---VTASGYQTSQPSQATAAttaattIGDVRIERAGSQRWLVVDRPADKLWTPLRDFW 121
Cdd:pfam06804   4 LKVPAGLILPEQNGEYDIPAVAnqgAVGKQLDIRPPLQVLPL------IEGSRVEESGDSATLLFENSKDELWQQVNDFL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796320921 122 QENGFLLDLDQESLGIMETDWAENRAKLpqdfirstiGKVFDSLYStgERDRFRTRLERTANG-GTEIYISHRGMVEVys 200
Cdd:pfam06804  78 AENNIPIAKRDDASGTLETDWITNQESL---------WNRSDEDVQ--LRQRYRFTISVKPHGrQAALSVSLLDLEEG-- 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796320921 201 nkdkDQTVWQPRPADVE-LETEFLRRLMVKLGVTEAQSQAIAASAPAQQ-AVARVTQVNNAPVVQFDDNFDRAWRRVGLS 278
Cdd:pfam06804 145 ----DDVKEVTSPADKQrYEADMLNNVIAYLDQERRQAEAALANRQSGGiDVQLGADDNGLPVLIVRAPYNVVWDRLPLV 220

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796320921 279 LDRTGFTVEDRDRSKGLYFVRYIEPVMDTKQPgffarmFGASKTEAATERYRVAVTSTDNKTTVAVLDNQGRPDGSAAAQ 358
Cdd:pfam06804 221 LPKLGFTVEDRDRSQGTYFVKYKAPSSGFWSS------LGGDELDLDEGEYRLQLGDLGNRTSITFLDAKGKPLTQEQND 294


                  ..
gi 1796320921 359 RI 360
Cdd:pfam06804 295 AL 296
PRK11679 PRK11679
outer membrane protein assembly factor BamC;
268-351 1.74e-04

outer membrane protein assembly factor BamC;


Pssm-ID: 236955  Cd Length: 346  Bit Score: 43.02  E-value: 1.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796320921 268 FDRAWRRVGLSLDRTGFTVEDRDRSKGLYFVRYIEPvmdtkQPGFFARMfGASKTEAATERYRVAVTSTDNKTTVAVLDN 347
Cdd:PRK11679  249 YNVVWQRLPAALEKVGMKVTDRTRSQGTVAVTYKPP-----SDSFWQEL-GAKDPELASGDYKLQVGDLDNRSSLQFIDP 322


                  ....
gi 1796320921 348 QGRP 351
Cdd:PRK11679  323 KGHP 326
 
Name Accession Description Interval E-value
BamC COG3317
Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope ...
 10-369 5.10e-148

Outer membrane beta-barrel protein assembly factor BamC [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442546  Cd Length: 354  Bit Score: 422.07  E-value: 5.10e-148
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796320921  10 FTRIGLLATATVLAAGCSMLQE----DKIDYKSAQRGSTLDVPPDLTQLSRDSRYTVP-GGVVTASGYQTSQPSQATAAt 84
Cdd:COG3317     3 SVRLVLLLLLVLLLAGCSSLQRyfrsGKVDYLSAPKLPPLEVPPDLTAPSQDDRYDIPaGGAATGSEYDIRPPAQVLPL- 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796320921  85 taattIGDVRIERAGSQRWLVVDRPADKLWTPLRDFWQENGFLLDLDQESLGIMETDWAENRAKLPqDFIRSTIgkvFDS 164
Cdd:COG3317    82 -----VDGVRIERSGDQRWLVVDASPEQLWPQLREFWQENGFTIASEDPAAGVMETDWAENRAKIP-DFIRRTL---LDG 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796320921 165 LYSTGERDRFRTRLERTANGGTEIYISHRGMVEVysNKDKDQTVWQPRPADVELETEFLRRLMVKLGVTEAQSQAIAASA 244
Cdd:COG3317   153 LYSTGERDRFRTRVERGVGGTTEIYVSHRGMEEV--GDQKDSTVWQPRPADPRLEAEMLNRLMVYLGADEEQAAAALAAA 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796320921 245 PAQQAVARVTQVNN-APVVQFDDNFDRAWRRVGLSLDRTGFTVEDRDRSKGLYFVRYIEPvMDTKQPGFFARMFGaSKTE 323
Cdd:COG3317   231 QVGGIRVQLGKDADgLPVLIVRAPFDRAWRRVGLALDRVGFTVEDRDRSQGLYYVRYVDP-DDGEKPGFWSRLFG-SDPE 308

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1796320921 324 AATERYRVAVTSTDNKTTVAVLDNQGRPDGSAAAQRIAKLLAEDLK 369
Cdd:COG3317   309 LKAGDYRVQVGDLGNRTSVTVLDAKGKPLTSDTADRILSLLQAQLR 354
Lipoprotein_18 pfam06804
NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known ...
 45-360 7.90e-53

NlpB/DapX lipoprotein; This family consists of a number of bacterial lipoproteins often known as NlpB or DapX. This lipoprotein is detected in outer membrane vesicles in Escherichia coli and appears to be nonessential.


Pssm-ID: 429129  Cd Length: 297  Bit Score: 176.73  E-value: 7.90e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796320921  45 LDVPPDLTQLSRDSRYTVPGGV---VTASGYQTSQPSQATAAttaattIGDVRIERAGSQRWLVVDRPADKLWTPLRDFW 121
Cdd:pfam06804   4 LKVPAGLILPEQNGEYDIPAVAnqgAVGKQLDIRPPLQVLPL------IEGSRVEESGDSATLLFENSKDELWQQVNDFL 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796320921 122 QENGFLLDLDQESLGIMETDWAENRAKLpqdfirstiGKVFDSLYStgERDRFRTRLERTANG-GTEIYISHRGMVEVys 200
Cdd:pfam06804  78 AENNIPIAKRDDASGTLETDWITNQESL---------WNRSDEDVQ--LRQRYRFTISVKPHGrQAALSVSLLDLEEG-- 144

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796320921 201 nkdkDQTVWQPRPADVE-LETEFLRRLMVKLGVTEAQSQAIAASAPAQQ-AVARVTQVNNAPVVQFDDNFDRAWRRVGLS 278
Cdd:pfam06804 145 ----DDVKEVTSPADKQrYEADMLNNVIAYLDQERRQAEAALANRQSGGiDVQLGADDNGLPVLIVRAPYNVVWDRLPLV 220

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796320921 279 LDRTGFTVEDRDRSKGLYFVRYIEPVMDTKQPgffarmFGASKTEAATERYRVAVTSTDNKTTVAVLDNQGRPDGSAAAQ 358
Cdd:pfam06804 221 LPKLGFTVEDRDRSQGTYFVKYKAPSSGFWSS------LGGDELDLDEGEYRLQLGDLGNRTSITFLDAKGKPLTQEQND 294


                  ..
gi 1796320921 359 RI 360
Cdd:pfam06804 295 AL 296
PRK11679 PRK11679
outer membrane protein assembly factor BamC;
268-351 1.74e-04

outer membrane protein assembly factor BamC;


Pssm-ID: 236955  Cd Length: 346  Bit Score: 43.02  E-value: 1.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1796320921 268 FDRAWRRVGLSLDRTGFTVEDRDRSKGLYFVRYIEPvmdtkQPGFFARMfGASKTEAATERYRVAVTSTDNKTTVAVLDN 347
Cdd:PRK11679  249 YNVVWQRLPAALEKVGMKVTDRTRSQGTVAVTYKPP-----SDSFWQEL-GAKDPELASGDYKLQVGDLDNRSSLQFIDP 322


                  ....
gi 1796320921 348 QGRP 351
Cdd:PRK11679  323 KGHP 326
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH